Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058779.t1 | XP_003590920.1 | 95.4 | 326 | 13 | 1 | 1 | 324 | 1 | 326 | 5.40E-177 | 630.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058779.t1 | G7I664 | 95.4 | 326 | 13 | 1 | 1 | 324 | 1 | 326 | 3.9e-177 | 630.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058776 | MS.gene058779 | 0.893189 | 7.92E-75 | -1.69E-46 |
| MS.gene058779 | MS.gene07604 | 0.809735 | 1.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCAGTCTCTCCCAAATT+TGG | 0.146471 | 1.4:+64662476 | MS.gene058779:CDS |
| AACCTGAGAGGACCCAAATT+TGG | 0.248097 | 1.4:-64662489 | None:intergenic |
| GTCTATACTTTGTGTAGTTT+TGG | 0.265572 | 1.4:-64660059 | None:intergenic |
| GCAAAATCATTGTATGATTA+TGG | 0.283650 | 1.4:+64660810 | MS.gene058779:CDS |
| CGTCCAATACGTGAATAATC+TGG | 0.340282 | 1.4:-64662899 | None:intergenic |
| ACCTGAGAGGACCCAAATTT+GGG | 0.351743 | 1.4:-64662488 | None:intergenic |
| ACCAATAGTAAAATAGCTAT+TGG | 0.352594 | 1.4:+64663474 | MS.gene058779:CDS |
| ATGACATTTCAATCCTCATT+TGG | 0.370364 | 1.4:+64663538 | MS.gene058779:CDS |
| CAAAAGCATCAATAAGTGTA+TGG | 0.377630 | 1.4:+64662428 | MS.gene058779:CDS |
| ATAGACAAATTAGTAGCTTA+AGG | 0.377646 | 1.4:+64660076 | MS.gene058779:CDS |
| AGTACCTCTTTGTAGAAGTA+TGG | 0.387381 | 1.4:-64660016 | None:intergenic |
| CAGGTCAGTCCGGAGCTTTA+TGG | 0.392752 | 1.4:+64662865 | MS.gene058779:intron |
| GTTCAGTCTCTCCCAAATTT+GGG | 0.393611 | 1.4:+64662477 | MS.gene058779:CDS |
| TCGTTCATAACTTCAATAGA+TGG | 0.395107 | 1.4:-64662454 | None:intergenic |
| CAAAAGAAAACAACTAGCTT+TGG | 0.402387 | 1.4:+64660359 | MS.gene058779:CDS |
| TCCCAAATTTGGGTCCTCTC+AGG | 0.406346 | 1.4:+64662487 | MS.gene058779:CDS |
| TGGCAAATGTGGCATCGAAA+TGG | 0.410450 | 1.4:+64660726 | MS.gene058779:CDS |
| AAGAAGATGCAAAGTGGAAC+AGG | 0.412758 | 1.4:-64659974 | None:intergenic |
| TGTTACAATCTTCTTTGTGC+TGG | 0.424833 | 1.4:+64663441 | MS.gene058779:CDS |
| GACCCAGATTATTCACGTAT+TGG | 0.425155 | 1.4:+64662896 | MS.gene058779:CDS |
| AATGCCAAGAGGTATGAAAA+TGG | 0.430413 | 1.4:+64660623 | MS.gene058779:CDS |
| TCTCCTGTCTCTGCTTATGC+TGG | 0.431089 | 1.4:+64663507 | MS.gene058779:CDS |
| TGAGGATTGAAATGTCATAT+TGG | 0.432408 | 1.4:-64663533 | None:intergenic |
| CGTACAGGAACCGTTCCCTT+TGG | 0.434510 | 1.4:-64660759 | None:intergenic |
| ATAAGCAGAGACAGGAGAAA+TGG | 0.442555 | 1.4:-64663502 | None:intergenic |
| GGCAAATGTGGCATCGAAAT+GGG | 0.448080 | 1.4:+64660727 | MS.gene058779:CDS |
| CAATCTATAAGATCTCCATC+TGG | 0.449906 | 1.4:-64660330 | None:intergenic |
| AATATTGACTCTTCCAAATG+AGG | 0.452688 | 1.4:-64663551 | None:intergenic |
| ATACCTCTTGGCATTTCACT+TGG | 0.458197 | 1.4:-64660615 | None:intergenic |
| TTCTACTAGTCAGGTCAGTC+CGG | 0.463381 | 1.4:+64662855 | MS.gene058779:intron |
| TTAGTAGCTTAAGGCTTGAA+AGG | 0.465638 | 1.4:+64660085 | MS.gene058779:CDS |
| GGAGGTGGGAAAAGGAAAAG+AGG | 0.474144 | 1.4:+64660686 | MS.gene058779:CDS |
| GTCCTCTCAGGTTCCTTCGA+TGG | 0.475009 | 1.4:+64662499 | MS.gene058779:CDS |
| TACTAAGACTAATGTGGAGG+TGG | 0.477306 | 1.4:+64660671 | MS.gene058779:CDS |
| ACTAATGTGGAGGTGGGAAA+AGG | 0.480517 | 1.4:+64660678 | MS.gene058779:CDS |
| AATAAATAACATTACCTCAA+TGG | 0.484489 | 1.4:-64660151 | None:intergenic |
| ATTACCTCAATGGTCAGAAC+AGG | 0.496747 | 1.4:-64660141 | None:intergenic |
| AGTGACTCTTATCAAGCAAC+CGG | 0.500615 | 1.4:+64663417 | MS.gene058779:CDS |
| GATCTTAACAGCATTGAAGC+TGG | 0.501018 | 1.4:+64662526 | MS.gene058779:CDS |
| ATCTTGTGATTCTTTAAAAG+TGG | 0.501598 | 1.4:-64660387 | None:intergenic |
| CAGCATTGAAGCTGGATGGC+AGG | 0.504238 | 1.4:+64662534 | MS.gene058779:CDS |
| GAGGTGGGAAAAGGAAAAGA+GGG | 0.513545 | 1.4:+64660687 | MS.gene058779:CDS |
| TTTAAAGAATCACAAGATCC+AGG | 0.521387 | 1.4:+64660392 | MS.gene058779:CDS |
| GCTTCAATGCTGTTAAGATC+AGG | 0.526831 | 1.4:-64662523 | None:intergenic |
| GATGCACCTGATGTATTCTC+TGG | 0.539147 | 1.4:+64660870 | MS.gene058779:CDS |
| CCATTGCCAGAGAATACATC+AGG | 0.546685 | 1.4:-64660876 | None:intergenic |
| GAACACAAATTCCACTCTCT+CGG | 0.547199 | 1.4:+64660841 | MS.gene058779:CDS |
| TTGCCAGCATAAGCAGAGAC+AGG | 0.550192 | 1.4:-64663510 | None:intergenic |
| GAAACAACGCATGGCAAATG+TGG | 0.550895 | 1.4:+64660715 | MS.gene058779:CDS |
| AATGGGACAAGGTGTCCAAA+GGG | 0.551200 | 1.4:+64660744 | MS.gene058779:CDS |
| CTGTTGTCACCATAAAGCTC+CGG | 0.551825 | 1.4:-64662874 | None:intergenic |
| AGGTGGGAAAAGGAAAAGAG+GGG | 0.557263 | 1.4:+64660688 | MS.gene058779:CDS |
| GCATCACTGCTCCGAGAGAG+TGG | 0.558421 | 1.4:-64660852 | None:intergenic |
| AAAAGCATCAATAAGTGTAT+GGG | 0.559353 | 1.4:+64662429 | MS.gene058779:CDS |
| GTCCAATACGTGAATAATCT+GGG | 0.562121 | 1.4:-64662898 | None:intergenic |
| AAATGGGACAAGGTGTCCAA+AGG | 0.571908 | 1.4:+64660743 | MS.gene058779:CDS |
| TATTAATTTCAGAGCCCAGA+TGG | 0.582916 | 1.4:+64660315 | MS.gene058779:intron |
| ACAAAGAAGATTGTAACATC+CGG | 0.583147 | 1.4:-64663436 | None:intergenic |
| GGTGGGAAAAGGAAAAGAGG+GGG | 0.588195 | 1.4:+64660689 | MS.gene058779:CDS |
| CAGATTATTCACGTATTGGA+CGG | 0.590845 | 1.4:+64662900 | MS.gene058779:CDS |
| CAGCATGCGATCGCGTACAC+AGG | 0.591359 | 1.4:+64662382 | MS.gene058779:intron |
| ACCTCAATGGTCAGAACAGG+AGG | 0.593688 | 1.4:-64660138 | None:intergenic |
| TGTACTGTACTCCTTCGTAC+AGG | 0.594034 | 1.4:-64660774 | None:intergenic |
| CAGAACAAGAAGATGCAAAG+TGG | 0.594463 | 1.4:-64659980 | None:intergenic |
| ATTGCCATACTTCTACAAAG+AGG | 0.594980 | 1.4:+64660012 | MS.gene058779:CDS |
| TCTTGTGATTCTTTAAAAGT+GGG | 0.595220 | 1.4:-64660386 | None:intergenic |
| ACTAAGACTAATGTGGAGGT+GGG | 0.601038 | 1.4:+64660672 | MS.gene058779:CDS |
| CCTGATGTATTCTCTGGCAA+TGG | 0.606931 | 1.4:+64660876 | MS.gene058779:CDS |
| AATCTATAAGATCTCCATCT+GGG | 0.608567 | 1.4:-64660329 | None:intergenic |
| GACAAGGTGTCCAAAGGGAA+CGG | 0.617225 | 1.4:+64660749 | MS.gene058779:CDS |
| GGATCATCACAAGAGATCTA+CGG | 0.619381 | 1.4:+64662403 | MS.gene058779:CDS |
| TTAACAGCATTGAAGCTGGA+TGG | 0.619858 | 1.4:+64662530 | MS.gene058779:CDS |
| TGTGGCATCGAAATGGGACA+AGG | 0.622901 | 1.4:+64660733 | MS.gene058779:CDS |
| GTTAAGATCAGGACCATCGA+AGG | 0.641054 | 1.4:-64662512 | None:intergenic |
| ATTCTCTGGCAATGGTCATG+AGG | 0.641144 | 1.4:+64660884 | MS.gene058779:CDS |
| TAATATTACTAAGACTAATG+TGG | 0.644042 | 1.4:+64660665 | MS.gene058779:CDS |
| GCCTCCTGTTCTGACCATTG+AGG | 0.647183 | 1.4:+64660137 | MS.gene058779:CDS |
| AGGGAACGGTTCCTGTACGA+AGG | 0.674300 | 1.4:+64660763 | MS.gene058779:CDS |
| TATTACTAAGACTAATGTGG+AGG | 0.677297 | 1.4:+64660668 | MS.gene058779:CDS |
| GACCATCGAAGGAACCTGAG+AGG | 0.686274 | 1.4:-64662501 | None:intergenic |
| ACTTCTACAAAGAGGTACTG+TGG | 0.691972 | 1.4:+64660020 | MS.gene058779:CDS |
| GCGCCAAGTGAAATGCCAAG+AGG | 0.712044 | 1.4:+64660612 | MS.gene058779:CDS |
| ATATTGTTGAGAGAAAGAGA+AGG | 0.756336 | 1.4:+64659947 | MS.gene058779:CDS |
| AAAATGGAGAGAGATGACAA+TGG | 0.770347 | 1.4:+64660639 | MS.gene058779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTATTAAAACGATT+CGG | - | chr1.4:64662050-64662069 | None:intergenic | 10.0% |
| !! | TAAAATAGTATAAAATTTGA+TGG | + | chr1.4:64661784-64661803 | MS.gene058779:intron | 10.0% |
| !! | TCAATTATTTGATATTTATT+TGG | - | chr1.4:64661241-64661260 | None:intergenic | 10.0% |
| !!! | ACTAATTTTATTTAATGAAA+TGG | + | chr1.4:64662814-64662833 | MS.gene058779:intron | 10.0% |
| !!! | ATTAAATTACTAGAAATTTT+AGG | + | chr1.4:64661553-64661572 | MS.gene058779:intron | 10.0% |
| !!! | TAGTAATTTATTATTTCTAA+TGG | + | chr1.4:64662195-64662214 | MS.gene058779:intron | 10.0% |
| !!! | TATTTTTAAAATTACAGTTT+TGG | + | chr1.4:64661374-64661393 | MS.gene058779:intron | 10.0% |
| !!! | TTTTAGCTATTTTTTTTATA+GGG | + | chr1.4:64663174-64663193 | MS.gene058779:intron | 10.0% |
| !! | AAAAAACTAAAACATGTAAA+AGG | + | chr1.4:64661429-64661448 | MS.gene058779:intron | 15.0% |
| !! | ACTTGAAGTTTAATTAATTA+AGG | - | chr1.4:64661891-64661910 | None:intergenic | 15.0% |
| !! | ATTTCAATCTAGATATATTA+TGG | + | chr1.4:64660950-64660969 | MS.gene058779:intron | 15.0% |
| !! | TTCATTTCTAAATAAAGTTT+AGG | - | chr1.4:64661094-64661113 | None:intergenic | 15.0% |
| !! | TTTAACATGTCTTTATAAAA+TGG | + | chr1.4:64660493-64660512 | MS.gene058779:intron | 15.0% |
| !!! | AAAAACTAAAAAAGAGTTTT+TGG | - | chr1.4:64661320-64661339 | None:intergenic | 15.0% |
| !!! | AAAACTAAAAAAGAGTTTTT+GGG | - | chr1.4:64661319-64661338 | None:intergenic | 15.0% |
| !!! | AAGACTTTTTTTTTTTTTTG+TGG | + | chr1.4:64662221-64662240 | MS.gene058779:intron | 15.0% |
| !!! | ATTAATTATCTTTTTTTGGT+TGG | + | chr1.4:64660289-64660308 | MS.gene058779:intron | 15.0% |
| !!! | ATTTAATCCTTTATTTCTTT+TGG | - | chr1.4:64661540-64661559 | None:intergenic | 15.0% |
| !!! | ATTTTTTCCAAAAGAAATAA+AGG | + | chr1.4:64661530-64661549 | MS.gene058779:intron | 15.0% |
| !!! | GTTTTAGCTATTTTTTTTAT+AGG | + | chr1.4:64663173-64663192 | MS.gene058779:intron | 15.0% |
| !!! | GTTTTGAATTTTTTAGTTTT+GGG | + | chr1.4:64661402-64661421 | MS.gene058779:intron | 15.0% |
| !!! | TACTTTCATTATCTTTTTTT+AGG | + | chr1.4:64663096-64663115 | MS.gene058779:intron | 15.0% |
| !!! | TATGGGTTAATATATAATTA+GGG | + | chr1.4:64661006-64661025 | MS.gene058779:intron | 15.0% |
| !!! | TGTTTTGAATTTTTTAGTTT+TGG | + | chr1.4:64661401-64661420 | MS.gene058779:intron | 15.0% |
| !!! | TTTTGAATTTTTTAGTTTTG+GGG | + | chr1.4:64661403-64661422 | MS.gene058779:intron | 15.0% |
| !! | AAACAAAAACTATTTCAAAC+AGG | + | chr1.4:64661494-64661513 | MS.gene058779:intron | 20.0% |
| !! | AATAAACAAAAAAAAAGGGA+AGG | - | chr1.4:64660256-64660275 | None:intergenic | 20.0% |
| !! | AATAAATAACATTACCTCAA+TGG | - | chr1.4:64660154-64660173 | None:intergenic | 20.0% |
| !! | ATATTAGTTATTAGCAAAGT+TGG | + | chr1.4:64661180-64661199 | MS.gene058779:intron | 20.0% |
| !! | ATCTTACATAGTTGTTTATT+TGG | + | chr1.4:64663386-64663405 | MS.gene058779:intron | 20.0% |
| !! | ATGATCTTACTATAATTACA+TGG | + | chr1.4:64660912-64660931 | MS.gene058779:intron | 20.0% |
| !! | CACATTATATGAAACATTAA+TGG | - | chr1.4:64660178-64660197 | None:intergenic | 20.0% |
| !! | TAATATTACTAAGACTAATG+TGG | + | chr1.4:64660665-64660684 | MS.gene058779:CDS | 20.0% |
| !! | TAATTAACACATGAAATGTT+CGG | - | chr1.4:64662731-64662750 | None:intergenic | 20.0% |
| !! | TCTAAATCTTTAATGTCATA+TGG | - | chr1.4:64661732-64661751 | None:intergenic | 20.0% |
| !! | TTAAAGTAGTTTATTAGAGT+GGG | + | chr1.4:64662975-64662994 | MS.gene058779:intron | 20.0% |
| !! | TTAGATTATATGTGATACTT+AGG | + | chr1.4:64662748-64662767 | MS.gene058779:intron | 20.0% |
| !! | TTCATATAATGTGTTTATAG+TGG | + | chr1.4:64660185-64660204 | MS.gene058779:intron | 20.0% |
| !!! | AAGATAATGAAAGTATGATT+TGG | - | chr1.4:64663091-64663110 | None:intergenic | 20.0% |
| !!! | AATACATGAATTTTGTAAGT+TGG | - | chr1.4:64662623-64662642 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTTTTTTGTGG+TGG | + | chr1.4:64662224-64662243 | MS.gene058779:intron | 20.0% |
| !!! | AGATAATGAAAGTATGATTT+GGG | - | chr1.4:64663090-64663109 | None:intergenic | 20.0% |
| !!! | CGGTTAGTTTATAAATTATA+AGG | + | chr1.4:64661156-64661175 | MS.gene058779:intron | 20.0% |
| !!! | CTATGGGTTAATATATAATT+AGG | + | chr1.4:64661005-64661024 | MS.gene058779:intron | 20.0% |
| !!! | TGTATATTTTACTATACTAC+TGG | + | chr1.4:64662660-64662679 | MS.gene058779:intron | 20.0% |
| !!! | TTCATTATCTTTTTTTAGGA+GGG | + | chr1.4:64663100-64663119 | MS.gene058779:intron | 20.0% |
| !!! | TTTAAAGTAGTTTATTAGAG+TGG | + | chr1.4:64662974-64662993 | MS.gene058779:intron | 20.0% |
| !!! | TTTCATTATCTTTTTTTAGG+AGG | + | chr1.4:64663099-64663118 | MS.gene058779:intron | 20.0% |
| ! | AAATTGGAATGATAGAAAAG+AGG | + | chr1.4:64663128-64663147 | MS.gene058779:intron | 25.0% |
| ! | AATTGGAATGATAGAAAAGA+GGG | + | chr1.4:64663129-64663148 | MS.gene058779:intron | 25.0% |
| ! | ACCAATAGTAAAATAGCTAT+TGG | + | chr1.4:64663474-64663493 | MS.gene058779:CDS | 25.0% |
| ! | ATAACTAAATCATGAATGCA+AGG | + | chr1.4:64661759-64661778 | MS.gene058779:intron | 25.0% |
| ! | ATAGACAAATTAGTAGCTTA+AGG | + | chr1.4:64660076-64660095 | MS.gene058779:CDS | 25.0% |
| ! | ATAGTAAAATATACACTGTC+AGG | - | chr1.4:64662655-64662674 | None:intergenic | 25.0% |
| ! | GCAAAATCATTGTATGATTA+TGG | + | chr1.4:64660810-64660829 | MS.gene058779:CDS | 25.0% |
| ! | TAACTAAATCATGAATGCAA+GGG | + | chr1.4:64661760-64661779 | MS.gene058779:intron | 25.0% |
| ! | TGGAAAAAATGTAAGACTTA+GGG | - | chr1.4:64661520-64661539 | None:intergenic | 25.0% |
| ! | TTAGACCCACAAAAATTATT+AGG | + | chr1.4:64663031-64663050 | MS.gene058779:intron | 25.0% |
| ! | TTGGAAAAAATGTAAGACTT+AGG | - | chr1.4:64661521-64661540 | None:intergenic | 25.0% |
| !! | ATCTTGTGATTCTTTAAAAG+TGG | - | chr1.4:64660390-64660409 | None:intergenic | 25.0% |
| !! | ATTTGGCCTAATAATTTTTG+TGG | - | chr1.4:64663040-64663059 | None:intergenic | 25.0% |
| !! | TCTTGTGATTCTTTAAAAGT+GGG | - | chr1.4:64660389-64660408 | None:intergenic | 25.0% |
| !! | TTTGGCCTAATAATTTTTGT+GGG | - | chr1.4:64663039-64663058 | None:intergenic | 25.0% |
| !!! | AAAAGCATCAATAAGTGTAT+GGG | + | chr1.4:64662429-64662448 | MS.gene058779:CDS | 25.0% |
| !!! | AAACATTTATTTTGTGTGCA+TGG | - | chr1.4:64660226-64660245 | None:intergenic | 25.0% |
| !!! | ATGGACTTGTTAAATAAAGA+AGG | + | chr1.4:64660512-64660531 | MS.gene058779:intron | 25.0% |
| !!! | GCTAGCTAGATTTTTTTTTT+GGG | - | chr1.4:64661851-64661870 | None:intergenic | 25.0% |
| !!! | TCATTATCTTTTTTTAGGAG+GGG | + | chr1.4:64663101-64663120 | MS.gene058779:intron | 25.0% |
| !!! | TCCAATAGCTATTTTACTAT+TGG | - | chr1.4:64663478-64663497 | None:intergenic | 25.0% |
| !!! | TGCTAGCTAGATTTTTTTTT+TGG | - | chr1.4:64661852-64661871 | None:intergenic | 25.0% |
| AACACCTAATATCACACTAA+TGG | - | chr1.4:64661060-64661079 | None:intergenic | 30.0% | |
| AATCTATAAGATCTCCATCT+GGG | - | chr1.4:64660332-64660351 | None:intergenic | 30.0% | |
| ACAAAGAAGATTGTAACATC+CGG | - | chr1.4:64663439-64663458 | None:intergenic | 30.0% | |
| AGAAATGAAGAGAAGAAATG+TGG | + | chr1.4:64661105-64661124 | MS.gene058779:intron | 30.0% | |
| ATATTGTTGAGAGAAAGAGA+AGG | + | chr1.4:64659947-64659966 | MS.gene058779:CDS | 30.0% | |
| ATGACATTTCAATCCTCATT+TGG | + | chr1.4:64663538-64663557 | MS.gene058779:CDS | 30.0% | |
| ATGACCATTAGTGTGATATT+AGG | + | chr1.4:64661053-64661072 | MS.gene058779:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr1.4:64662269-64662288 | None:intergenic | 30.0% | |
| GATTGGATAATGACTTCTAT+GGG | + | chr1.4:64660989-64661008 | MS.gene058779:intron | 30.0% | |
| TATTACTAAGACTAATGTGG+AGG | + | chr1.4:64660668-64660687 | MS.gene058779:CDS | 30.0% | |
| TCGTTCATAACTTCAATAGA+TGG | - | chr1.4:64662457-64662476 | None:intergenic | 30.0% | |
| TGAGGATTGAAATGTCATAT+TGG | - | chr1.4:64663536-64663555 | None:intergenic | 30.0% | |
| TTATGGAAAATAATGCTACG+TGG | + | chr1.4:64660967-64660986 | MS.gene058779:intron | 30.0% | |
| TTGAAATACTAGAAGTCAGA+AGG | - | chr1.4:64662564-64662583 | None:intergenic | 30.0% | |
| TTTAAAGAATCACAAGATCC+AGG | + | chr1.4:64660392-64660411 | MS.gene058779:CDS | 30.0% | |
| ! | CAAAAGAAAACAACTAGCTT+TGG | + | chr1.4:64660359-64660378 | MS.gene058779:CDS | 30.0% |
| ! | GTCTATACTTTGTGTAGTTT+TGG | - | chr1.4:64660062-64660081 | None:intergenic | 30.0% |
| ! | TATAGACACTCATTTTCAGT+TGG | + | chr1.4:64662692-64662711 | MS.gene058779:intron | 30.0% |
| ! | TTAGTGGTTATGTTAGTTTC+TGG | + | chr1.4:64663211-64663230 | MS.gene058779:intron | 30.0% |
| !! | AAGCTAGTTGTTTTCTTTTG+TGG | - | chr1.4:64660359-64660378 | None:intergenic | 30.0% |
| !! | CAAAAGCATCAATAAGTGTA+TGG | + | chr1.4:64662428-64662447 | MS.gene058779:CDS | 30.0% |
| !!! | CATTATCTTTTTTTAGGAGG+GGG | + | chr1.4:64663102-64663121 | MS.gene058779:intron | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr1.4:64662228-64662247 | MS.gene058779:intron | 30.0% |
| AAAATGGAGAGAGATGACAA+TGG | + | chr1.4:64660639-64660658 | MS.gene058779:CDS | 35.0% | |
| AGTACCTCTTTGTAGAAGTA+TGG | - | chr1.4:64660019-64660038 | None:intergenic | 35.0% | |
| ATTGCCATACTTCTACAAAG+AGG | + | chr1.4:64660012-64660031 | MS.gene058779:CDS | 35.0% | |
| CAATCTATAAGATCTCCATC+TGG | - | chr1.4:64660333-64660352 | None:intergenic | 35.0% | |
| CAGATTATTCACGTATTGGA+CGG | + | chr1.4:64662900-64662919 | MS.gene058779:CDS | 35.0% | |
| CATAAAATATGCAAGGTTCG+AGG | - | chr1.4:64662262-64662281 | None:intergenic | 35.0% | |
| CTACTTAGGCAGAGTTAATT+AGG | + | chr1.4:64663295-64663314 | MS.gene058779:intron | 35.0% | |
| CTTTGCTTATTCTACTAGTC+AGG | + | chr1.4:64662846-64662865 | MS.gene058779:intron | 35.0% | |
| GAAAATAATGCTACGTGGAT+TGG | + | chr1.4:64660972-64660991 | MS.gene058779:intron | 35.0% | |
| GAGTGTATATCAAACAGTTG+AGG | - | chr1.4:64661695-64661714 | None:intergenic | 35.0% | |
| GGAAATGTTAGCAATGTTAG+TGG | + | chr1.4:64663195-64663214 | MS.gene058779:intron | 35.0% | |
| GGATTGGATAATGACTTCTA+TGG | + | chr1.4:64660988-64661007 | MS.gene058779:intron | 35.0% | |
| GTCCAATACGTGAATAATCT+GGG | - | chr1.4:64662901-64662920 | None:intergenic | 35.0% | |
| TACAATTCCTCTTCTCACAA+TGG | - | chr1.4:64661459-64661478 | None:intergenic | 35.0% | |
| TATGTGATACTTAGGTAGCA+CGG | + | chr1.4:64662756-64662775 | MS.gene058779:intron | 35.0% | |
| TATTAATTTCAGAGCCCAGA+TGG | + | chr1.4:64660315-64660334 | MS.gene058779:intron | 35.0% | |
| TGAAGAGAAGAAATGTGGTT+TGG | + | chr1.4:64661110-64661129 | MS.gene058779:intron | 35.0% | |
| TGTTACAATCTTCTTTGTGC+TGG | + | chr1.4:64663441-64663460 | MS.gene058779:CDS | 35.0% | |
| TTAACTCTGCCTAAGTAGTT+CGG | - | chr1.4:64663293-64663312 | None:intergenic | 35.0% | |
| TTAGTAGCTTAAGGCTTGAA+AGG | + | chr1.4:64660085-64660104 | MS.gene058779:CDS | 35.0% | |
| ! | AATGCCAAGAGGTATGAAAA+TGG | + | chr1.4:64660623-64660642 | MS.gene058779:CDS | 35.0% |
| ! | AGAAGAAATGTGGTTTGGAA+GGG | + | chr1.4:64661115-64661134 | MS.gene058779:intron | 35.0% |
| ! | GTTATGTTAGTTTCTGGAGA+TGG | + | chr1.4:64663217-64663236 | MS.gene058779:intron | 35.0% |
| !! | TATTAAAACGATTCGGTGTC+TGG | - | chr1.4:64662043-64662062 | None:intergenic | 35.0% |
| !! | TTTTAGGAGGGGGTTTAAAT+TGG | + | chr1.4:64663112-64663131 | MS.gene058779:intron | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr1.4:64662229-64662248 | MS.gene058779:intron | 35.0% |
| AAGAAGATGCAAAGTGGAAC+AGG | - | chr1.4:64659977-64659996 | None:intergenic | 40.0% | |
| ACTAAGACTAATGTGGAGGT+GGG | + | chr1.4:64660672-64660691 | MS.gene058779:CDS | 40.0% | |
| AGGATAACCATTGTGAGAAG+AGG | + | chr1.4:64661449-64661468 | MS.gene058779:intron | 40.0% | |
| AGTGACTCTTATCAAGCAAC+CGG | + | chr1.4:64663417-64663436 | MS.gene058779:CDS | 40.0% | |
| AGTTCAGTCTCTCCCAAATT+TGG | + | chr1.4:64662476-64662495 | MS.gene058779:CDS | 40.0% | |
| ATAAGCAGAGACAGGAGAAA+TGG | - | chr1.4:64663505-64663524 | None:intergenic | 40.0% | |
| ATACCTCTTGGCATTTCACT+TGG | - | chr1.4:64660618-64660637 | None:intergenic | 40.0% | |
| ATTACCTCAATGGTCAGAAC+AGG | - | chr1.4:64660144-64660163 | None:intergenic | 40.0% | |
| CAACTTCCAATAGTTGTACC+TGG | - | chr1.4:64660413-64660432 | None:intergenic | 40.0% | |
| CAAGATCCAGGTACAACTAT+TGG | + | chr1.4:64660404-64660423 | MS.gene058779:intron | 40.0% | |
| CAGAACAAGAAGATGCAAAG+TGG | - | chr1.4:64659983-64660002 | None:intergenic | 40.0% | |
| CGTCCAATACGTGAATAATC+TGG | - | chr1.4:64662902-64662921 | None:intergenic | 40.0% | |
| GAACACAAATTCCACTCTCT+CGG | + | chr1.4:64660841-64660860 | MS.gene058779:CDS | 40.0% | |
| GACCCAGATTATTCACGTAT+TGG | + | chr1.4:64662896-64662915 | MS.gene058779:CDS | 40.0% | |
| GCTTCAATGCTGTTAAGATC+AGG | - | chr1.4:64662526-64662545 | None:intergenic | 40.0% | |
| GGATCATCACAAGAGATCTA+CGG | + | chr1.4:64662403-64662422 | MS.gene058779:CDS | 40.0% | |
| GTTCAGTCTCTCCCAAATTT+GGG | + | chr1.4:64662477-64662496 | MS.gene058779:CDS | 40.0% | |
| TACTAAGACTAATGTGGAGG+TGG | + | chr1.4:64660671-64660690 | MS.gene058779:CDS | 40.0% | |
| TGAAATGTTCGGTTGCTTCA+AGG | - | chr1.4:64662720-64662739 | None:intergenic | 40.0% | |
| TTTGGAAGGGAAACCTATGA+AGG | + | chr1.4:64661128-64661147 | MS.gene058779:intron | 40.0% | |
| ! | CTCTCCATTTTCATACCTCT+TGG | - | chr1.4:64660630-64660649 | None:intergenic | 40.0% |
| ! | GAGAAGAAATGTGGTTTGGA+AGG | + | chr1.4:64661114-64661133 | MS.gene058779:intron | 40.0% |
| ! | GATCTTAACAGCATTGAAGC+TGG | + | chr1.4:64662526-64662545 | MS.gene058779:CDS | 40.0% |
| ! | TTAACAGCATTGAAGCTGGA+TGG | + | chr1.4:64662530-64662549 | MS.gene058779:CDS | 40.0% |
| !! | ACTTCTACAAAGAGGTACTG+TGG | + | chr1.4:64660020-64660039 | MS.gene058779:CDS | 40.0% |
| !! | TAGTTCGGTTGGTGAACTAA+GGG | - | chr1.4:64663278-64663297 | None:intergenic | 40.0% |
| !!! | CTTTGTGTAGTTTTGGATGC+TGG | - | chr1.4:64660055-64660074 | None:intergenic | 40.0% |
| !!! | TTTTGGGACGTGTTTCAAAC+AGG | - | chr1.4:64661303-64661322 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr1.4:64662230-64662249 | MS.gene058779:intron | 40.0% |
| AACCTGAGAGGACCCAAATT+TGG | - | chr1.4:64662492-64662511 | None:intergenic | 45.0% | |
| ACAGTAACAGAGCTGGCATT+TGG | - | chr1.4:64663057-64663076 | None:intergenic | 45.0% | |
| ACCTGAGAGGACCCAAATTT+GGG | - | chr1.4:64662491-64662510 | None:intergenic | 45.0% | |
| ACTAACCGACCAACCTTCAT+AGG | - | chr1.4:64661144-64661163 | None:intergenic | 45.0% | |
| ACTAATGTGGAGGTGGGAAA+AGG | + | chr1.4:64660678-64660697 | MS.gene058779:CDS | 45.0% | |
| ACTGAGAACAGTAACAGAGC+TGG | - | chr1.4:64663064-64663083 | None:intergenic | 45.0% | |
| AGGTGGGAAAAGGAAAAGAG+GGG | + | chr1.4:64660688-64660707 | MS.gene058779:CDS | 45.0% | |
| AGTTAAGCTCACGAGGACAA+TGG | + | chr1.4:64662300-64662319 | MS.gene058779:intron | 45.0% | |
| ATTCTCTGGCAATGGTCATG+AGG | + | chr1.4:64660884-64660903 | MS.gene058779:CDS | 45.0% | |
| CCATTGCCAGAGAATACATC+AGG | - | chr1.4:64660879-64660898 | None:intergenic | 45.0% | |
| CCTCTTCCTTCAAACTCCTT+CGG | + | chr1.4:64663249-64663268 | MS.gene058779:intron | 45.0% | |
| CCTGATGTATTCTCTGGCAA+TGG | + | chr1.4:64660876-64660895 | MS.gene058779:CDS | 45.0% | |
| CTGTTGTCACCATAAAGCTC+CGG | - | chr1.4:64662877-64662896 | None:intergenic | 45.0% | |
| GAAACAACGCATGGCAAATG+TGG | + | chr1.4:64660715-64660734 | MS.gene058779:CDS | 45.0% | |
| GAAGGGAAACCTATGAAGGT+TGG | + | chr1.4:64661132-64661151 | MS.gene058779:intron | 45.0% | |
| GAGGTGGGAAAAGGAAAAGA+GGG | + | chr1.4:64660687-64660706 | MS.gene058779:CDS | 45.0% | |
| GATGCACCTGATGTATTCTC+TGG | + | chr1.4:64660870-64660889 | MS.gene058779:CDS | 45.0% | |
| GGGATGCAGCTATATAGTCT+TGG | + | chr1.4:64661026-64661045 | MS.gene058779:intron | 45.0% | |
| GTTAAGATCAGGACCATCGA+AGG | - | chr1.4:64662515-64662534 | None:intergenic | 45.0% | |
| GTTCACCAACCGAACTACTT+AGG | + | chr1.4:64663281-64663300 | MS.gene058779:intron | 45.0% | |
| TATTCACGTATTGGACGGTC+AGG | + | chr1.4:64662905-64662924 | MS.gene058779:intron | 45.0% | |
| TGTACTGTACTCCTTCGTAC+AGG | - | chr1.4:64660777-64660796 | None:intergenic | 45.0% | |
| TTCTACTAGTCAGGTCAGTC+CGG | + | chr1.4:64662855-64662874 | MS.gene058779:intron | 45.0% | |
| ! | AAATGGGACAAGGTGTCCAA+AGG | + | chr1.4:64660743-64660762 | MS.gene058779:CDS | 45.0% |
| ! | AATGGGACAAGGTGTCCAAA+GGG | + | chr1.4:64660744-64660763 | MS.gene058779:CDS | 45.0% |
| ! | GGAAACCTATGAAGGTTGGT+CGG | + | chr1.4:64661136-64661155 | MS.gene058779:intron | 45.0% |
| ! | GGCAAATGTGGCATCGAAAT+GGG | + | chr1.4:64660727-64660746 | MS.gene058779:CDS | 45.0% |
| ! | TGGCAAATGTGGCATCGAAA+TGG | + | chr1.4:64660726-64660745 | MS.gene058779:CDS | 45.0% |
| !! | GTAGTTCGGTTGGTGAACTA+AGG | - | chr1.4:64663279-64663298 | None:intergenic | 45.0% |
| !! | TATAAATAAACAAAAAAAAA+GGG | - | chr1.4:64660260-64660279 | None:intergenic | 5.0% |
| !! | TTATAAATAAACAAAAAAAA+AGG | - | chr1.4:64660261-64660280 | None:intergenic | 5.0% |
| !!! | AAAAATTAATTATCTTTTTT+TGG | + | chr1.4:64660285-64660304 | MS.gene058779:intron | 5.0% |
| !!! | ATATTAAAAATATATGTTTT+TGG | + | chr1.4:64661652-64661671 | MS.gene058779:intron | 5.0% |
| AAACATAGAGACACGCGTGC+AGG | - | chr1.4:64662942-64662961 | None:intergenic | 50.0% | |
| ACCTCAATGGTCAGAACAGG+AGG | - | chr1.4:64660141-64660160 | None:intergenic | 50.0% | |
| AGGGGGTAAGAAACAACGCA+TGG | + | chr1.4:64660706-64660725 | MS.gene058779:CDS | 50.0% | |
| CCGAAGGAGTTTGAAGGAAG+AGG | - | chr1.4:64663252-64663271 | None:intergenic | 50.0% | |
| CGAACTGAGTTAAGCTCACG+AGG | + | chr1.4:64662293-64662312 | MS.gene058779:intron | 50.0% | |
| CTCTGCCTAAGTAGTTCGGT+TGG | - | chr1.4:64663289-64663308 | None:intergenic | 50.0% | |
| GGAGGTGGGAAAAGGAAAAG+AGG | + | chr1.4:64660686-64660705 | MS.gene058779:CDS | 50.0% | |
| GGTGGGAAAAGGAAAAGAGG+GGG | + | chr1.4:64660689-64660708 | MS.gene058779:CDS | 50.0% | |
| TCCCAAATTTGGGTCCTCTC+AGG | + | chr1.4:64662487-64662506 | MS.gene058779:CDS | 50.0% | |
| TCTCCTGTCTCTGCTTATGC+TGG | + | chr1.4:64663507-64663526 | MS.gene058779:CDS | 50.0% | |
| TTGCCAGCATAAGCAGAGAC+AGG | - | chr1.4:64663513-64663532 | None:intergenic | 50.0% | |
| ! | GACAAGGTGTCCAAAGGGAA+CGG | + | chr1.4:64660749-64660768 | MS.gene058779:CDS | 50.0% |
| ! | TGTGGCATCGAAATGGGACA+AGG | + | chr1.4:64660733-64660752 | MS.gene058779:CDS | 50.0% |
| AAGGTTCGAGGTTCGAACCC+CGG | - | chr1.4:64662250-64662269 | None:intergenic | 55.0% | |
| AGGGAACGGTTCCTGTACGA+AGG | + | chr1.4:64660763-64660782 | MS.gene058779:CDS | 55.0% | |
| CAGGTCAGTCCGGAGCTTTA+TGG | + | chr1.4:64662865-64662884 | MS.gene058779:intron | 55.0% | |
| CGTACAGGAACCGTTCCCTT+TGG | - | chr1.4:64660762-64660781 | None:intergenic | 55.0% | |
| GACCATCGAAGGAACCTGAG+AGG | - | chr1.4:64662504-64662523 | None:intergenic | 55.0% | |
| GCCTCCTGTTCTGACCATTG+AGG | + | chr1.4:64660137-64660156 | MS.gene058779:CDS | 55.0% | |
| GCGCCAAGTGAAATGCCAAG+AGG | + | chr1.4:64660612-64660631 | MS.gene058779:CDS | 55.0% | |
| GTCCTCTCAGGTTCCTTCGA+TGG | + | chr1.4:64662499-64662518 | MS.gene058779:CDS | 55.0% | |
| ! | CAGCATTGAAGCTGGATGGC+AGG | + | chr1.4:64662534-64662553 | MS.gene058779:CDS | 55.0% |
| CAGCATGCGATCGCGTACAC+AGG | + | chr1.4:64662382-64662401 | MS.gene058779:intron | 60.0% | |
| GCATCACTGCTCCGAGAGAG+TGG | - | chr1.4:64660855-64660874 | None:intergenic | 60.0% | |
| GGGACGCCGAAGGAGTTTGA+AGG | - | chr1.4:64663258-64663277 | None:intergenic | 60.0% | |
| GGTGAACTAAGGGACGCCGA+AGG | - | chr1.4:64663268-64663287 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 64659941 | 64663564 | 64659941 | ID=MS.gene058779 |
| chr1.4 | mRNA | 64659941 | 64663564 | 64659941 | ID=MS.gene058779.t1;Parent=MS.gene058779 |
| chr1.4 | exon | 64659941 | 64660158 | 64659941 | ID=MS.gene058779.t1.exon1;Parent=MS.gene058779.t1 |
| chr1.4 | CDS | 64659941 | 64660158 | 64659941 | ID=cds.MS.gene058779.t1;Parent=MS.gene058779.t1 |
| chr1.4 | exon | 64660327 | 64660413 | 64660327 | ID=MS.gene058779.t1.exon2;Parent=MS.gene058779.t1 |
| chr1.4 | CDS | 64660327 | 64660413 | 64660327 | ID=cds.MS.gene058779.t1;Parent=MS.gene058779.t1 |
| chr1.4 | exon | 64660609 | 64660905 | 64660609 | ID=MS.gene058779.t1.exon3;Parent=MS.gene058779.t1 |
| chr1.4 | CDS | 64660609 | 64660905 | 64660609 | ID=cds.MS.gene058779.t1;Parent=MS.gene058779.t1 |
| chr1.4 | exon | 64662385 | 64662555 | 64662385 | ID=MS.gene058779.t1.exon4;Parent=MS.gene058779.t1 |
| chr1.4 | CDS | 64662385 | 64662555 | 64662385 | ID=cds.MS.gene058779.t1;Parent=MS.gene058779.t1 |
| chr1.4 | exon | 64662868 | 64662921 | 64662868 | ID=MS.gene058779.t1.exon5;Parent=MS.gene058779.t1 |
| chr1.4 | CDS | 64662868 | 64662921 | 64662868 | ID=cds.MS.gene058779.t1;Parent=MS.gene058779.t1 |
| chr1.4 | exon | 64663417 | 64663564 | 64663417 | ID=MS.gene058779.t1.exon6;Parent=MS.gene058779.t1 |
| chr1.4 | CDS | 64663417 | 64663564 | 64663417 | ID=cds.MS.gene058779.t1;Parent=MS.gene058779.t1 |
| Gene Sequence |
| Protein sequence |
