AlfalfaGEDB | MS.gene059031

M. sativa cultivar XinJiangDaYe / MS.gene059031

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059031.t1	XP_013468405.1	97.1	728	21	0	1	728	29	756	0.00E+00	1401.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059031.t1	Q8RWW0	65.3	681	198	14	42	712	74	726	1.4e-226	787.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059031.t1	A0A072VKX3	97.1	728	21	0	1	728	29	756	0.0e+00	1401.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059031	MS.gene24015	0.916726	1.26E-85	-1.69E-46
MS.gene059031	MS.gene54817	0.880767	4.18E-70	-1.69E-46
MS.gene059031	MS.gene94816	0.840094	1.07E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059031.t1	MTR_1g069340	97.115	728	21	0	1	728	29	756	0.0	1459
MS.gene059031.t1	MTR_7g099220	69.379	725	196	8	1	720	25	728	0.0	919
MS.gene059031.t1	MTR_2g039290	50.930	699	294	15	26	701	755	1427	0.0	601
MS.gene059031.t1	MTR_2g039290	50.930	699	294	15	26	701	767	1439	0.0	600
MS.gene059031.t1	MTR_2g039290	50.930	699	294	15	26	701	533	1205	0.0	600
MS.gene059031.t1	MTR_4g126270	54.530	574	244	9	66	626	271	840	0.0	561
MS.gene059031.t1	MTR_8g016330	53.565	575	250	10	58	619	189	759	0.0	558
MS.gene059031.t1	MTR_7g109670	41.051	609	284	18	14	603	115	667	5.42e-122	382
MS.gene059031.t1	MTR_1g086870	43.126	531	263	13	85	607	73	572	3.06e-120	374
MS.gene059031.t1	MTR_1g117060	47.606	376	186	6	263	634	43	411	7.36e-104	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059031.t1	AT2G20300	66.366	666	185	13	57	712	90	726	0.0	806
MS.gene059031.t1	AT5G56890	52.542	649	256	16	72	697	463	1082	0.0	591
MS.gene059031.t1	AT4G02010	44.402	527	248	16	85	599	165	658	7.12e-121	379
MS.gene059031.t1	AT1G68690	48.338	391	189	6	216	597	264	650	1.43e-103	333
MS.gene059031.t1	AT1G68690	48.338	391	189	6	216	597	264	650	1.43e-103	333
MS.gene059031.t1	AT1G68690	48.338	391	189	6	216	597	264	650	1.43e-103	333
MS.gene059031.t1	AT1G68690	48.705	386	185	6	216	592	264	645	2.70e-102	328
MS.gene059031.t1	AT1G20650	49.547	331	149	3	286	599	25	354	4.13e-101	316
MS.gene059031.t1	AT5G18610	48.857	350	168	6	303	643	63	410	4.52e-99	315
MS.gene059031.t1	AT5G18610	48.857	350	168	6	303	643	63	410	4.52e-99	315

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Find 197 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAGGTTGCTTCTT+CGG	0.358594	1.2:+52206357	None:intergenic
AAAAGTGATGTTTATAGTTA+TGG	0.378767	1.2:-52206929	MS.gene059031:CDS
AAAATTTAGCAATACAACTG+TGG	0.658753	1.2:-52209501	MS.gene059031:CDS
AAAGTCCCCACGACCCTTGT+AGG	0.376389	1.2:+52207401	None:intergenic
AAATTACCTTGGCCTTCAGA+AGG	0.532149	1.2:+52210530	None:intergenic
AACATATTTGAAGCAAAGCC+AGG	0.513431	1.2:-52209603	MS.gene059031:CDS
AACCAGGTAAATATCAACTA+CGG	0.632129	1.2:+52209535	None:intergenic
AACCGTAGTTGATATTTACC+TGG	0.547842	1.2:-52209537	MS.gene059031:CDS
AACGAGGGTTACTGGCCTTG+AGG	0.595652	1.2:-52206278	None:intergenic
AAGACCTGCAGCACTTCCAC+TGG	0.468860	1.2:+52209256	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATACTAATAAGGGTG+TGG	+	chr1.2:52208613-52208632	None:intergenic	30.0%
AAACAAATTTCTGCAGAATG+TGG	-	chr1.2:52207304-52207323	MS.gene059031:intron	30.0%
AAAGAGTCAATCTTAACGTA+AGG	+	chr1.2:52208193-52208212	None:intergenic	30.0%
AACCAGGTAAATATCAACTA+CGG	+	chr1.2:52207545-52207564	None:intergenic	30.0%
AAGACAGTCTACAGAATTAT+TGG	+	chr1.2:52209936-52209955	None:intergenic	30.0%
AAGCACACACATTTAAATCA+CGG	+	chr1.2:52208430-52208449	None:intergenic	30.0%
AATCCAAAATCAGAAACCTT+GGG	+	chr1.2:52209622-52209641	None:intergenic	30.0%
AATCCTACTTGCATAATAGA+TGG	-	chr1.2:52209777-52209796	MS.gene059031:intron	30.0%
ACAAGAAAGTTCCTCTAAAT+AGG	-	chr1.2:52207623-52207642	MS.gene059031:intron	30.0%
ACAAGATTTATAAGATCAGC+GGG	-	chr1.2:52208660-52208679	MS.gene059031:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	52206280	52210819	52206280	ID=MS.gene059031
chr1.2	mRNA	52206280	52210819	52206280	ID=MS.gene059031.t1;Parent=MS.gene059031
chr1.2	exon	52210720	52210819	52210720	ID=MS.gene059031.t1.exon1;Parent=MS.gene059031.t1
chr1.2	CDS	52210720	52210819	52210720	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1
chr1.2	exon	52210537	52210635	52210537	ID=MS.gene059031.t1.exon2;Parent=MS.gene059031.t1
chr1.2	CDS	52210537	52210635	52210537	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1
chr1.2	exon	52209411	52209779	52209411	ID=MS.gene059031.t1.exon3;Parent=MS.gene059031.t1
chr1.2	CDS	52209411	52209779	52209411	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1
chr1.2	exon	52209060	52209329	52209060	ID=MS.gene059031.t1.exon4;Parent=MS.gene059031.t1
chr1.2	CDS	52209060	52209329	52209060	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1
chr1.2	exon	52207741	52208133	52207741	ID=MS.gene059031.t1.exon5;Parent=MS.gene059031.t1
chr1.2	CDS	52207741	52208133	52207741	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1
chr1.2	exon	52207398	52207638	52207398	ID=MS.gene059031.t1.exon6;Parent=MS.gene059031.t1
chr1.2	CDS	52207398	52207638	52207398	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1
chr1.2	exon	52206280	52206994	52206280	ID=MS.gene059031.t1.exon7;Parent=MS.gene059031.t1
chr1.2	CDS	52206280	52206994	52206280	ID=cds.MS.gene059031.t1;Parent=MS.gene059031.t1

Gene Sequence

>MS.gene059031

ATGAGTGTGTCATTTGCTTCATCTGAACCATCTAAAGTGTGGTTAGTTAAACCTTCGTCTGGGACATCTTCTGCTCATGTGTCATCTCAATCTTTTCAAGGTATATACTATCATATTTATCGAGAACTTTCTGGTACATATCATGTTTTCAATGAGCCTCTGAATTAATCTTCTCGTGTTTTAGCTCCTAGCGTGACTCCAGGACCAAAACATCCTCACCATCCCAGACAATACCATCCTGTGAAACCTTATGCCGTGTCTCCCTCCCCTTCTGAAGGCCAAGGTAATTTCTTGCAGTTAGACACCTTTCTTCTGCTTCTACTTTTACCAGAGTGGGACTATTATGATATCTCAACGTCTTTTTGGTCTTTAAATAATATTGTAGCCACAGTCCCTTGTTTTCCCTTCCTTTATATGCTTGGCGATGAGTTGATCAAGGGAATCATGAGTAAATTCTTTGTAACATGTTGGAATGTTACAACATAACCTAATACTCTGAAATTTTGTGATTTGTCTATAGTAATTCTTTTAGTGCATGCTATCATGTTAAGCGGTAAGATGCTATAAATAGGCATACTCTCAAAAACAGAAATATTGGAAAGAATTTTTTGAATCTAACTAGTTTAATGATTTGGATTAAAAATAACGCGCAAAGAATCAATTTATTTGCTAGATTTTATGGTTTTATATGTAGAAAGGAAGTTATTTGAAACTAAATTTACCTCTGGATGTTCATTGAAGTTTCTTTTGGTTTTTTAAAAATTATTGTCTGCTTATGTACATCATGATAATGTCTAACGGGTTTAGCTAATAGAGTGGACTGGAGTGGTGCTGACTTTTCATTTTAATGGAAAGTTCAAAGTTTACATTTCAATGAGATTAATCATTTTTTTGATTGAAATACACGTAGTTCTGTGAAGCAGCATTTTTCCAGTCCTTTTATTCCTTAGTACCATACACTACACCAAGGATTGCATTTCATTACATTTTTCATGGAACATATTACCATGCACTCATTCTTCAAAAACAAATTTCTGCAGAATGTGGCCTAAGCTGCAGGGATCCACTCACAACAACTCCCTTTGGTTCACCTTGTGGCTGTGTATTTCCCATGAAAGTCGGACTTTTACTGGATGTAGCTCCTTTGGTTGTTTTTCCTGTAATTCGTGAGTTAGAGATTGAACTTGCATTCGGAACATATTTGAAGCAAAGCCAGGTGAGGATAATGGGTGTTAGTGCTGACATTCAAAATCAAGAAAGAACCGTAGTTGATATTTACCTGGTTCCACTTGGTGAAAAATTTAGCAATACAACTGTGGTTCTGATATCCCGAAGATTTTGGCACAAGAAAGTTCCTCTAAATAGGAGTCTTTTTGGTGATTACACAGTTTTGTACACTAATTATCCAGGTAGGTAATTGTTTTGCTTACCTGAATTTTACATTTTTCCTGTCATATGTTACTGGTTGAGACTGAAGCAATTAGTATCAGGAATGCCATCATCGCCACCACATGGAACAATAACTGGGAGTGGTCCTCTTCCCAGTGGAAGTGCTGCAGGTCTTCTCCCATTCACTGCCAACTTTATCAACAAGAACGAGGAAATGACTCTGAGGACCATAATCATTATTTCTGCATCTTCCATTATACTCTTTCTGGGTTTGGTTGGAGCATTTTTCATCATTTTTAAGCTGAGAAAACTCCGGAGACCATCAGGTGCTGTTCACCCACCATTCACATCATCTCTAAACAAGAGCTCAGGTACAGTTTCAGTTTTCTTTTGTGTGTGTGTTTGTTTTTGTTTTGTAAAATATTTTTCAGATGCTTGCATAGAAATTTTGAGGTTTTTCTAAGCATTATCTTGTGAATTATTCTAGGTTAGGTTGTTGCTTACTTGCTTAAGAGATGATTCCTTACGTTAAGATTGACTCTTTTTGCACTTCATTTCTATCAGTTCAAAATATCTTCATTAGAATCATTACCATGTGCTAAAGATTATGTCTGTTATATTCTATTTCTTGAAAAGTAGTTGCAAAAGACTGTCTTTTACACTTTTACAAATTCATAGCTTGATGATCTCTGGATTTCATTTTTTCCCAATATTATTTGATCATCAAATGTCAACTGTGCCACAGTTCAATTAGCTTTCCGTGATTTAAATGTGTGTGCTTTCTAGTGATTTGATTCGATTCAACAATTAGAAAGCAAATTTTTTGACCAATACATATTAGTATTACTTGGGGACATCGCCTCCTGTTTAAGGGCTAGTTGAATAGCCTTCTTACAAGGGGCGAAAATCCTTAAAGAGAATCCTCTGGGATCCCTGGCATGCCACACCCTTATTAGTATGTTTTCAACCAGTAGGATAGTGGTATTTGTCTACAAGATTTATAAGATCAGCGGGATTTTCTCCGCTTTAAGTGGCTATATCGATAACTTTGTGATTCAACAAATAAAGTAATGAAATTAACGTTTTCTCATTTATGATAAAAAAAAAAATCGCCTTTACCTATTTTGTGGACTTCGGTTGCTAAGTGGGATGCAAAAATTGTTGCAAATTTGGTACATTGCCTCTTGCATTAATGGCAAAACTATTATGTTGCCTTGGACTCTTTGCTGTCTACTTTGTTCAGTATATCATATCAGAATCGAGGTTAAATAAAAACGGATGATTGATTGTTTTGCAGCCATGGAGTCTATGCTGTCTAGCAGAATTACAAGCTCATCGTCAGTGTCCCATTCGTCCAACTTAGCTACTTCTGCTCTTTCTGTGAAAACATTTTCCCTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAGCTCACAAAGATTATTGGGAGAAGGAGGATTTGGGCGTGTTTATCATGGGAGATTGGATGATGGAACTGATGTTGCAGTTAAACAACTAAGGAGGGATATTCATCAAGGTGGAGATCATGAATTTATTGTGGAAGTTGAGATGTTGTGCCGTTTTCATCATCGTAATCTTGTGAAACTCATCGGTATATGCACAGAAGGGCACAAACGGTGCATGGTGTATGAGCTTATTCGCAATGGTAGTGTCGAGTCTCATTTGCATGGTAAGTGATGACGTATTTTTTCCGGCTTCAGTATGCATCTGTTGTTCAATTTACATTGCGTTGCCATTAACTTAATTTAACTCATGTTATTTTTCCTTGCAGGTGTTGACCGGATAAATCACCCTCTAGATTGGGAAGCACGAAAAAAAATTGCCCTTGGAGCTGCGAGAGGATTGGCCTATCTTCACGAGGATTCTAATCCTCGTGTAATCCACCGAGACTTTAAAGCTAGCAACGTGTTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCAACTGAAGGAAGTCGTTCTATTCCTACAAGGGTCGTGGGGACTTTTGGGTAAGTACAAGACTTTGTCTGCCACAATTGATTTAATAATTCTTAAAATGTTATACCCTGGAGAGTATGGTTGTTAATCCTACTTGCATAATAGATGGGGGTGGTACATACATGATGTGTACCTTTTCCATTTCGTAAGCATTATTGAGTTTGGCCATGATTAAGATATTCGATATCTTTCAATTTTTAACAGAATAATGATTAACTTGTACTATATTTTACGTCAGTTAGCCAATAATTCTGTAGACTGTCTTTTCTTCTCTACTTAATAGTTTACCAAAATTATCAACTGCATTAATTGTAACTTCTGTATCTTATAAATTGCGCGTGATTAACATCAGTGTGTGACGTCGTTATTCCTGGCCTTCAAAATGATACCATTTTTATCTGTTTGGTTTTGCAGGTATGTCGCCCCAGAATATGCAATGACAGGCCACTTGCTTGTTAAAAGTGATGTTTATAGTTATGGTGTTGTACTGCTTGAACTTCTAACAGGAAGAAAGCCAGTGGATATGTCTCAACCTCTTGGAGAGGAGAATCTAGTAGTATGGGCACGTCCACTTTTGAAAAGTAGGGAGGGTTTAGAACAGTTGGTGGATCCAACATTGGCTGGAACTTATGACTTTGATGAAATGACAAAGGTTGCTGCTATCGCTTCAATGTGTGTTCACCTGGAGGTCACTAAGAGACCCTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATTCAATGATAACGATGACATGGATCGCTACAGCCGGAAAGAATCTTCTGGTCAAGAGTCTGATTTTAGAGGCGACCTTTCTGATAGCAGTTGGCGGTGTGATGAGCCTGAAGATATAACCTGTCGACTAGGTTTTAGGCAACCATTAGCATCTTCCTTCATCACAATGGATTACAGTTCTGGTCCACTTGAAGAACTGGAAAACAGACATTTTGTAGCTTCAGGTTTTGTGGGAGATGATATGTCTTTAGCAAGTAGACTCGGGAATAGATCAGGTCCCTTGAGAACCGGCCGAAGAAGCAACCTTTCCTTTTATAGGTTTAATGGAAGTCAGAGTGATCCTGCAGTACTTCCTTCCAAGCGTGTTAGGAACGAGGGTTACTGGCCTTGA

Protein sequence

>MS.gene059031.t1

MSVSFASSEPSKVWLVKPSSGTSSAHVSSQSFQAPSVTPGPKHPHHPRQYHPVKPYAVSPSPSEGQECGLSCRDPLTTTPFGSPCGCVFPMKVGLLLDVAPLVVFPVIRELEIELAFGTYLKQSQVRIMGVSADIQNQERTVVDIYLVPLGEKFSNTTVVLISRRFWHKKVPLNRSLFGDYTVLYTNYPGMPSSPPHGTITGSGPLPSGSAAGLLPFTANFINKNEEMTLRTIIIISASSIILFLGLVGAFFIIFKLRKLRRPSGAVHPPFTSSLNKSSAMESMLSSRITSSSSVSHSSNLATSALSVKTFSLSELEKATDKFSSQRLLGEGGFGRVYHGRLDDGTDVAVKQLRRDIHQGGDHEFIVEVEMLCRFHHRNLVKLIGICTEGHKRCMVYELIRNGSVESHLHGVDRINHPLDWEARKKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSRSIPTRVVGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPLGEENLVVWARPLLKSREGLEQLVDPTLAGTYDFDEMTKVAAIASMCVHLEVTKRPFMGEVVQALKLIFNDNDDMDRYSRKESSGQESDFRGDLSDSSWRCDEPEDITCRLGFRQPLASSFITMDYSSGPLEELENRHFVASGFVGDDMSLASRLGNRSGPLRTGRRSNLSFYRFNGSQSDPAVLPSKRVRNEGYWP