AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059659

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059659.t1 MTR_5g016610 94.931 217 10 1 1 216 55 271 1.31e-146 409
MS.gene059659.t1 MTR_4g094908 61.742 264 50 7 2 216 77 338 1.33e-88 265
MS.gene059659.t1 MTR_4g127040 45.385 260 88 7 1 212 60 313 3.72e-62 196
MS.gene059659.t1 MTR_1g009613 58.273 139 51 2 84 216 203 340 1.73e-51 169
MS.gene059659.t1 MTR_1g070455 72.897 107 29 0 96 202 245 351 7.28e-44 150
MS.gene059659.t1 MTR_3g108960 54.348 138 62 1 73 210 244 380 5.02e-43 149
MS.gene059659.t1 MTR_0117s0040 67.532 77 25 0 125 201 55 131 3.18e-33 120
MS.gene059659.t1 MTR_2g016770 56.977 86 36 1 119 203 9 94 9.83e-29 107
MS.gene059659.t1 MTR_8g087000 53.846 91 35 1 120 203 45 135 2.47e-28 107
MS.gene059659.t1 MTR_2g083870 51.961 102 33 2 120 210 50 146 3.04e-28 107
MS.gene059659.t1 MTR_7g109600 56.180 89 35 1 117 201 22 110 3.23e-28 107
MS.gene059659.t1 MTR_2g032030 48.739 119 56 2 88 201 206 324 4.73e-28 109
MS.gene059659.t1 MTR_2g032030 48.739 119 56 2 88 201 206 324 6.47e-28 110
MS.gene059659.t1 MTR_2g016770 56.627 83 35 1 122 203 4 86 1.31e-27 104
MS.gene059659.t1 MTR_8g087000 68.852 61 19 0 143 203 76 136 1.63e-27 105
MS.gene059659.t1 MTR_8g028565 60.241 83 28 1 119 201 135 212 2.10e-27 107
MS.gene059659.t1 MTR_7g079040 60.241 83 28 1 119 201 134 211 3.04e-27 106
MS.gene059659.t1 MTR_1g099600 57.647 85 30 2 119 202 164 243 6.19e-25 99.8
MS.gene059659.t1 MTR_3g056100 49.495 99 41 2 119 209 225 322 4.43e-24 99.0
MS.gene059659.t1 MTR_3g056100 49.495 99 41 2 119 209 238 335 4.87e-24 99.0
MS.gene059659.t1 MTR_3g056100 49.495 99 41 2 119 209 382 479 5.75e-24 99.4
MS.gene059659.t1 MTR_3g056100 49.495 99 41 2 119 209 369 466 5.87e-24 99.4
MS.gene059659.t1 MTR_5g094430 48.958 96 37 2 119 203 194 288 1.46e-23 97.4
MS.gene059659.t1 MTR_5g094430 48.958 96 37 2 119 203 216 310 1.53e-23 97.4
MS.gene059659.t1 MTR_5g094430 48.958 96 37 2 119 203 328 422 1.91e-23 97.8
MS.gene059659.t1 MTR_2g024350 56.061 66 29 0 137 202 1 66 3.72e-23 93.2
MS.gene059659.t1 MTR_2g024380 51.316 76 37 0 137 212 244 319 1.10e-22 95.5
MS.gene059659.t1 MTR_7g109800 49.398 83 41 1 119 201 120 201 1.29e-21 90.5
MS.gene059659.t1 MTR_7g100510 49.333 75 37 1 140 214 357 430 2.11e-21 91.7
MS.gene059659.t1 MTR_7g100510 51.429 70 31 3 133 201 177 244 6.90e-15 73.2
MS.gene059659.t1 MTR_7g011820 61.905 63 23 1 141 203 407 468 9.82e-21 90.1
MS.gene059659.t1 MTR_7g011820 53.226 62 26 3 141 201 224 283 1.76e-13 68.9
MS.gene059659.t1 MTR_4g013260 40.909 132 67 4 74 205 276 396 1.44e-20 89.4
MS.gene059659.t1 MTR_4g013260 52.632 57 26 1 145 201 185 240 5.11e-14 70.5
MS.gene059659.t1 MTR_8g098945 63.158 57 21 0 145 201 130 186 1.46e-20 87.4
MS.gene059659.t1 MTR_5g042920 55.072 69 30 1 141 209 317 384 2.92e-20 88.2
MS.gene059659.t1 MTR_5g042920 46.575 73 37 2 131 203 138 208 2.58e-13 68.6
MS.gene059659.t1 MTR_4g094412 33.908 174 88 5 47 203 130 293 3.13e-20 88.6
MS.gene059659.t1 MTR_4g094412 33.908 174 88 5 47 203 139 302 3.14e-20 88.6
MS.gene059659.t1 MTR_3g031220 51.899 79 37 1 125 203 346 423 4.70e-20 88.2
MS.gene059659.t1 MTR_3g031220 54.386 57 24 2 145 201 199 253 1.17e-13 69.7
MS.gene059659.t1 MTR_4g082580 51.316 76 36 1 141 216 275 349 8.80e-20 86.7
MS.gene059659.t1 MTR_3g009470 47.368 95 39 2 119 203 460 553 9.57e-20 87.4
MS.gene059659.t1 MTR_3g009470 50.877 57 26 2 145 201 281 335 1.63e-11 63.5
MS.gene059659.t1 MTR_7g080020 45.714 105 45 3 119 212 457 560 1.38e-19 87.0
MS.gene059659.t1 MTR_7g080020 50.000 58 27 2 145 202 281 336 1.90e-11 63.2
MS.gene059659.t1 MTR_5g074400 51.899 79 37 1 125 203 401 478 1.45e-19 86.7
MS.gene059659.t1 MTR_5g074400 50.877 57 26 2 145 201 244 298 1.14e-12 66.6
MS.gene059659.t1 MTR_3g106060 55.172 58 26 0 145 202 139 196 1.47e-19 85.1
MS.gene059659.t1 MTR_4g007060 46.591 88 43 2 118 201 98 185 1.54e-19 84.7
MS.gene059659.t1 MTR_4g007060 46.591 88 43 2 118 201 132 219 1.69e-19 85.1
MS.gene059659.t1 MTR_1g015140 52.113 71 33 1 131 201 89 158 2.00e-19 82.0
MS.gene059659.t1 MTR_2g023930 50.000 76 38 0 128 203 289 364 2.11e-19 86.3
MS.gene059659.t1 MTR_1g086790 45.783 83 44 1 119 201 133 214 3.16e-19 84.3
MS.gene059659.t1 MTR_3g053330 50.000 74 37 0 130 203 237 310 3.36e-19 85.5
MS.gene059659.t1 MTR_4g107970 55.224 67 28 1 141 205 173 239 4.30e-19 85.5
MS.gene059659.t1 MTR_7g071120 40.458 131 63 4 74 203 266 382 4.59e-19 85.1
MS.gene059659.t1 MTR_7g071120 52.632 57 25 2 145 201 167 221 2.44e-12 65.5
MS.gene059659.t1 MTR_1g013760 52.632 57 27 0 145 201 141 197 4.97e-19 83.6
MS.gene059659.t1 MTR_4g107970 55.224 67 28 1 141 205 250 316 7.22e-19 84.7
MS.gene059659.t1 MTR_2g105060 55.000 60 27 0 142 201 92 151 7.52e-19 82.0
MS.gene059659.t1 MTR_7g080000 51.899 79 37 1 125 203 413 490 7.52e-19 84.7
MS.gene059659.t1 MTR_7g080000 30.147 136 75 5 67 202 175 290 5.63e-12 64.7
MS.gene059659.t1 MTR_2g105060 55.000 60 27 0 142 201 167 226 8.10e-19 83.2
MS.gene059659.t1 MTR_7g110720 48.649 74 38 0 130 203 202 275 8.90e-19 84.3
MS.gene059659.t1 MTR_7g009730 54.412 68 29 1 141 206 214 281 9.82e-19 84.3
MS.gene059659.t1 MTR_7g110720 48.649 74 38 0 130 203 175 248 9.90e-19 84.0
MS.gene059659.t1 MTR_4g130900 47.126 87 41 2 115 201 334 415 1.08e-18 84.0
MS.gene059659.t1 MTR_4g094588 49.296 71 35 1 131 201 165 234 1.30e-18 82.8
MS.gene059659.t1 MTR_5g091390 52.113 71 33 1 131 201 144 213 1.77e-18 82.4
MS.gene059659.t1 MTR_4g132430 48.684 76 39 0 128 203 111 186 1.95e-18 82.8
MS.gene059659.t1 MTR_3g104750 41.837 98 50 3 110 201 64 160 2.26e-18 79.0
MS.gene059659.t1 MTR_4g132430 48.684 76 39 0 128 203 245 320 2.45e-18 83.2
MS.gene059659.t1 MTR_2g088000 47.368 76 40 0 128 203 333 408 2.71e-18 83.2
MS.gene059659.t1 MTR_8g069935 52.239 67 32 0 145 211 332 398 3.40e-18 82.8
MS.gene059659.t1 MTR_8g067635 55.385 65 29 0 137 201 342 406 9.36e-18 81.6
MS.gene059659.t1 MTR_8g092010 49.315 73 36 1 131 203 95 166 1.08e-17 77.8
MS.gene059659.t1 MTR_2g045360 55.932 59 26 0 145 203 212 270 1.12e-17 80.9
MS.gene059659.t1 MTR_4g049790 55.000 60 27 0 144 203 312 371 1.21e-17 81.3
MS.gene059659.t1 MTR_5g043880 45.783 83 44 1 119 201 99 180 1.56e-17 79.3
MS.gene059659.t1 MTR_3g090860 38.938 113 55 4 92 199 87 190 1.64e-17 80.1
MS.gene059659.t1 MTR_1g077780 44.706 85 46 1 125 209 43 126 3.10e-17 75.5
MS.gene059659.t1 MTR_8g007270 42.529 87 46 2 119 202 126 211 3.21e-17 77.4
MS.gene059659.t1 MTR_8g092140 50.794 63 30 1 140 202 156 217 5.55e-17 77.0
MS.gene059659.t1 MTR_7g062220 45.570 79 39 2 123 201 106 180 6.56e-17 78.2
MS.gene059659.t1 MTR_8g067650 52.778 72 33 1 131 201 325 396 8.85e-17 78.6
MS.gene059659.t1 MTR_2g033820 48.000 75 38 1 127 201 186 259 9.41e-17 78.2
MS.gene059659.t1 MTR_3g095080 45.333 75 40 1 128 202 128 201 1.03e-16 75.9
MS.gene059659.t1 MTR_3g095080 45.333 75 40 1 128 202 152 225 1.44e-16 75.9
MS.gene059659.t1 MTR_5g097490 47.222 72 37 1 131 202 239 309 1.74e-16 77.4
MS.gene059659.t1 MTR_6g053200 43.529 85 45 1 117 201 306 387 4.28e-16 76.6
MS.gene059659.t1 MTR_7g079010 40.000 95 56 1 107 201 104 197 5.16e-16 73.9
MS.gene059659.t1 MTR_1g013790 48.387 62 32 0 142 203 99 160 6.00e-16 74.7
MS.gene059659.t1 MTR_6g086555 36.607 112 58 3 111 210 162 272 1.29e-15 75.1
MS.gene059659.t1 MTR_4g049760 53.333 60 28 0 144 203 290 349 1.47e-15 75.1
MS.gene059659.t1 MTR_3g095040 47.887 71 36 1 131 201 105 174 1.98e-15 72.4
MS.gene059659.t1 MTR_4g122530 42.697 89 49 2 128 215 192 279 7.46e-15 72.8
MS.gene059659.t1 MTR_7g117200 42.222 90 48 2 114 199 86 175 8.26e-15 72.4
MS.gene059659.t1 MTR_7g028415 44.286 70 38 1 140 209 89 157 9.75e-15 69.7
MS.gene059659.t1 MTR_7g028710 44.286 70 38 1 140 209 89 157 9.75e-15 69.7
MS.gene059659.t1 MTR_5g067680 42.353 85 45 3 118 199 176 259 1.41e-14 71.6
MS.gene059659.t1 MTR_8g027860 43.182 88 47 2 115 199 106 193 1.75e-14 71.6
MS.gene059659.t1 MTR_8g099350 41.837 98 48 4 119 212 106 198 2.67e-14 70.9
MS.gene059659.t1 MTR_1g078260 50.649 77 32 3 127 202 234 305 4.83e-14 70.5
MS.gene059659.t1 MTR_3g031220 54.386 57 24 2 145 201 199 253 8.89e-14 69.7
MS.gene059659.t1 MTR_8g087000 66.667 39 13 0 164 202 35 73 5.00e-13 65.5
MS.gene059659.t1 MTR_5g018380 52.632 57 24 2 145 201 124 177 1.33e-12 63.9
MS.gene059659.t1 MTR_2g075610 43.056 72 39 1 145 214 30 101 3.79e-12 63.2
MS.gene059659.t1 MTR_5g067700 34.783 115 73 1 87 199 49 163 7.71e-12 62.8
MS.gene059659.t1 MTR_8g096730 42.623 61 34 1 141 201 67 126 1.16e-11 60.8
MS.gene059659.t1 MTR_3g009470 50.877 57 26 2 145 201 281 335 1.39e-11 63.5
MS.gene059659.t1 MTR_2g075750 41.333 75 35 2 145 210 29 103 3.13e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059659.t1 AT2G23320 51.351 259 68 7 5 216 70 317 6.04e-73 224
MS.gene059659.t1 AT4G31550 43.542 271 87 8 1 209 45 311 8.62e-63 198
MS.gene059659.t1 AT4G31550 43.911 271 85 9 1 209 45 310 8.49e-62 196
MS.gene059659.t1 AT4G24240 69.925 133 31 1 73 205 219 342 1.43e-61 196
MS.gene059659.t1 AT2G24570 61.240 129 46 1 83 207 178 306 1.65e-52 172
MS.gene059659.t1 AT3G04670 78.571 98 20 1 105 202 224 320 2.78e-51 169
MS.gene059659.t1 AT5G28650 61.314 137 46 3 68 202 189 320 9.06e-51 167
MS.gene059659.t1 AT2G30590 71.296 108 28 2 96 201 264 370 2.33e-50 168
MS.gene059659.t1 AT2G23320 45.050 202 58 6 5 164 70 260 2.42e-41 141
MS.gene059659.t1 AT4G31550 38.496 226 72 9 1 164 45 265 5.78e-33 120
MS.gene059659.t1 AT4G24240 64.130 92 24 1 73 164 219 301 3.94e-32 118
MS.gene059659.t1 AT1G29280 51.000 100 42 2 113 206 38 136 7.02e-29 108
MS.gene059659.t1 AT4G01250 51.402 107 44 2 95 201 87 185 1.67e-28 108
MS.gene059659.t1 AT3G58710 53.922 102 31 2 120 210 40 136 4.77e-28 107
MS.gene059659.t1 AT3G58710 47.899 119 48 2 106 210 19 137 8.60e-28 106
MS.gene059659.t1 AT2G34830 57.471 87 32 2 120 201 186 272 1.25e-27 108
MS.gene059659.t1 AT2G34830 57.471 87 32 2 120 201 195 281 1.43e-27 108
MS.gene059659.t1 AT1G30650 57.471 87 32 2 120 201 188 274 1.45e-26 105
MS.gene059659.t1 AT3G04670 75.000 64 15 1 105 168 224 286 1.43e-25 101
MS.gene059659.t1 AT5G52830 53.012 83 35 1 119 201 144 222 8.30e-24 97.4
MS.gene059659.t1 AT5G26170 56.944 72 30 1 131 202 100 170 2.41e-23 92.4
MS.gene059659.t1 AT4G23550 54.545 77 31 1 127 203 127 199 9.76e-23 94.0
MS.gene059659.t1 AT2G04880 49.412 85 39 2 131 212 294 377 5.97e-22 93.6
MS.gene059659.t1 AT2G04880 49.412 85 39 2 131 212 270 353 6.12e-22 93.2
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 189 263 9.48e-22 92.0
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 189 263 9.48e-22 92.0
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 189 263 9.48e-22 92.0
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 189 263 9.48e-22 92.0
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 325 399 1.47e-21 92.4
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 365 439 1.48e-21 92.4
MS.gene059659.t1 AT4G26640 53.947 76 34 1 128 203 293 367 1.52e-21 92.4
MS.gene059659.t1 AT1G13960 54.795 73 32 1 131 203 243 314 3.09e-21 90.5
MS.gene059659.t1 AT1G13960 54.839 62 25 3 141 201 72 131 1.16e-14 72.0
MS.gene059659.t1 AT2G38470 52.632 76 35 1 128 203 346 420 3.69e-21 91.3
MS.gene059659.t1 AT2G38470 52.632 57 25 2 145 201 185 239 2.61e-13 68.6
MS.gene059659.t1 AT5G07100 53.425 73 33 1 131 203 128 199 5.89e-21 87.4
MS.gene059659.t1 AT5G07100 49.123 57 28 1 145 201 25 80 5.96e-12 63.2
MS.gene059659.t1 AT5G07100 53.425 73 33 1 131 203 128 199 5.89e-21 87.4
MS.gene059659.t1 AT5G07100 49.123 57 28 1 145 201 25 80 5.96e-12 63.2
MS.gene059659.t1 AT5G07100 53.425 73 33 1 131 203 128 199 5.89e-21 87.4
MS.gene059659.t1 AT5G07100 49.123 57 28 1 145 201 25 80 5.96e-12 63.2
MS.gene059659.t1 AT5G07100 53.425 73 33 1 131 203 128 199 5.89e-21 87.4
MS.gene059659.t1 AT5G07100 49.123 57 28 1 145 201 25 80 5.96e-12 63.2
MS.gene059659.t1 AT1G13960 54.795 73 32 1 131 203 396 467 6.83e-21 90.5
MS.gene059659.t1 AT1G13960 54.839 62 25 3 141 201 225 284 1.16e-14 72.4
MS.gene059659.t1 AT5G64810 34.239 184 101 6 39 213 7 179 7.82e-21 86.3
MS.gene059659.t1 AT1G29860 51.316 76 36 1 128 203 120 194 1.49e-20 87.4
MS.gene059659.t1 AT4G18170 44.706 85 46 1 119 203 147 230 1.56e-20 88.2
MS.gene059659.t1 AT5G07100 53.425 73 33 1 131 203 221 292 3.18e-20 87.0
MS.gene059659.t1 AT5G07100 49.123 57 28 1 145 201 118 173 1.02e-11 63.5
MS.gene059659.t1 AT5G45050 50.602 83 37 1 119 201 1131 1209 3.79e-20 88.6
MS.gene059659.t1 AT5G45050 50.602 83 37 1 119 201 1159 1237 4.07e-20 88.6
MS.gene059659.t1 AT5G45050 50.602 83 37 1 119 201 1020 1098 4.50e-20 88.6
MS.gene059659.t1 AT5G49520 49.367 79 39 1 128 206 205 282 4.58e-20 87.8
MS.gene059659.t1 AT1G62300 50.000 76 38 0 128 203 296 371 1.11e-19 87.0
MS.gene059659.t1 AT2G03340 52.055 73 34 1 131 203 402 473 1.21e-19 87.0
MS.gene059659.t1 AT2G03340 51.389 72 32 3 140 210 245 314 5.22e-16 76.3
MS.gene059659.t1 AT4G04450 48.684 76 39 0 128 203 182 257 1.43e-19 86.7
MS.gene059659.t1 AT4G22070 50.000 76 38 0 128 203 281 356 1.59e-19 86.7
MS.gene059659.t1 AT4G22070 50.000 76 38 0 128 203 281 356 1.59e-19 86.7
MS.gene059659.t1 AT4G22070 50.000 76 38 0 128 203 281 356 1.59e-19 86.7
MS.gene059659.t1 AT4G22070 50.000 76 38 0 128 203 281 356 1.59e-19 86.7
MS.gene059659.t1 AT5G56270 46.875 96 39 2 119 203 451 545 2.04e-19 86.7
MS.gene059659.t1 AT2G47260 46.988 83 43 1 119 201 149 230 2.13e-19 85.1
MS.gene059659.t1 AT4G30935 55.932 59 25 1 145 203 332 389 2.62e-19 85.9
MS.gene059659.t1 AT5G15130 56.716 67 27 1 141 205 180 246 2.78e-19 85.9
MS.gene059659.t1 AT4G04450 48.684 76 39 0 128 203 276 351 3.07e-19 85.9
MS.gene059659.t1 AT5G15130 56.716 67 27 1 141 205 222 288 3.36e-19 85.9
MS.gene059659.t1 AT1G68150 61.818 55 21 0 149 203 240 294 4.42e-19 84.7
MS.gene059659.t1 AT4G31800 54.386 57 26 0 145 201 112 168 1.10e-18 82.0
MS.gene059659.t1 AT4G39410 46.512 86 42 2 120 202 196 280 1.14e-18 82.8
MS.gene059659.t1 AT4G31800 54.386 57 26 0 145 201 177 233 1.78e-18 82.4
MS.gene059659.t1 AT4G26440 39.098 133 66 3 69 201 311 428 2.06e-18 83.6
MS.gene059659.t1 AT4G26440 51.724 58 26 2 145 202 179 234 2.10e-11 63.2
MS.gene059659.t1 AT1G80840 49.254 67 33 1 145 210 147 213 2.56e-18 81.6
MS.gene059659.t1 AT2G37260 40.351 114 59 2 98 203 213 325 2.62e-18 82.4
MS.gene059659.t1 AT2G37260 55.172 58 24 2 145 202 84 139 5.74e-13 67.0
MS.gene059659.t1 AT2G37260 40.351 114 59 2 98 203 215 327 2.69e-18 82.4
MS.gene059659.t1 AT2G37260 55.172 58 24 2 145 202 86 141 5.79e-13 67.0
MS.gene059659.t1 AT2G37260 40.351 114 59 2 98 203 295 407 3.34e-18 82.4
MS.gene059659.t1 AT2G37260 55.172 58 24 2 145 202 166 221 4.45e-13 67.8
MS.gene059659.t1 AT3G01080 56.250 64 27 1 140 203 302 364 3.68e-18 82.4
MS.gene059659.t1 AT3G01080 53.226 62 26 3 141 201 163 222 2.51e-13 68.6
MS.gene059659.t1 AT3G01080 57.143 63 26 1 141 203 341 402 3.94e-18 82.4
MS.gene059659.t1 AT3G01080 53.226 62 26 3 141 201 201 260 2.05e-13 68.9
MS.gene059659.t1 AT4G01720 48.684 76 39 0 128 203 223 298 5.20e-18 82.0
MS.gene059659.t1 AT3G62340 47.500 80 41 1 122 201 96 174 5.86e-18 80.5
MS.gene059659.t1 AT1G69310 46.341 82 43 1 120 201 123 203 6.72e-18 80.5
MS.gene059659.t1 AT1G69310 46.341 82 43 1 120 201 123 203 6.72e-18 80.5
MS.gene059659.t1 AT1G69310 46.341 82 43 1 120 201 123 203 6.72e-18 80.5
MS.gene059659.t1 AT1G55600 48.052 77 36 2 128 201 288 363 6.83e-18 82.0
MS.gene059659.t1 AT1G64000 42.857 84 47 1 118 201 88 170 1.18e-17 78.2
MS.gene059659.t1 AT2G40740 44.330 97 50 3 107 199 134 230 1.22e-17 79.7
MS.gene059659.t1 AT2G40740 44.330 97 50 3 107 199 143 239 1.64e-17 79.7
MS.gene059659.t1 AT2G25000 53.448 58 27 0 145 202 104 161 1.66e-17 78.2
MS.gene059659.t1 AT2G25000 53.448 58 27 0 145 202 104 161 1.66e-17 78.2
MS.gene059659.t1 AT5G46350 46.575 73 38 1 131 203 170 241 2.06e-17 79.7
MS.gene059659.t1 AT2G25000 53.448 58 27 0 145 202 126 183 3.75e-17 77.8
MS.gene059659.t1 AT2G25000 53.448 58 27 0 145 202 147 204 4.62e-17 77.8
MS.gene059659.t1 AT5G41570 40.860 93 53 2 122 213 76 167 8.58e-17 75.5
MS.gene059659.t1 AT2G44745 42.857 84 44 2 121 201 119 201 9.74e-17 76.3
MS.gene059659.t1 AT3G01970 45.205 73 39 1 131 203 52 123 1.71e-16 73.9
MS.gene059659.t1 AT1G18860 46.250 80 40 2 127 203 219 298 3.68e-16 77.0
MS.gene059659.t1 AT2G30250 45.205 73 39 1 131 203 315 386 4.58e-16 76.3
MS.gene059659.t1 AT5G45260 45.238 84 38 2 120 201 1190 1267 9.46e-16 75.9
MS.gene059659.t1 AT2G21900 56.140 57 24 1 145 201 110 165 1.34e-15 72.8
MS.gene059659.t1 AT5G43290 56.140 57 24 1 145 201 115 170 5.05e-15 72.4
MS.gene059659.t1 AT5G13080 41.772 79 45 1 131 209 54 131 7.41e-15 69.3
MS.gene059659.t1 AT2G46130 50.000 62 30 1 140 201 26 86 7.85e-15 68.2
MS.gene059659.t1 AT4G11070 39.316 117 65 3 86 199 53 166 1.45e-14 71.2
MS.gene059659.t1 AT4G11070 39.316 117 65 3 86 199 85 198 1.98e-14 71.2
MS.gene059659.t1 AT4G23810 38.710 124 67 4 91 206 100 222 2.84e-14 70.9
MS.gene059659.t1 AT1G69810 51.724 58 27 1 149 205 208 265 4.97e-14 70.5
MS.gene059659.t1 AT1G69810 51.724 58 27 1 149 205 150 207 5.98e-14 69.7
MS.gene059659.t1 AT3G01080 53.226 62 26 3 141 201 201 260 1.55e-13 68.6
MS.gene059659.t1 AT1G69310 43.902 82 41 2 120 201 123 199 1.73e-13 68.2
MS.gene059659.t1 AT3G56400 29.936 157 100 5 52 199 22 177 4.39e-12 64.3
MS.gene059659.t1 AT2G46400 40.476 84 46 2 120 199 78 161 6.03e-12 63.9
MS.gene059659.t1 AT5G24110 42.169 83 45 2 119 199 89 170 6.15e-12 63.9
MS.gene059659.t1 AT1G66560 49.153 59 28 1 143 199 102 160 1.38e-11 62.4
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.56e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.56e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.70e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.70e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.75e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.83e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.90e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 1.93e-11 63.5
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 402 456 2.02e-11 63.2
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 2.06e-11 63.2
MS.gene059659.t1 AT4G12020 50.877 57 26 2 145 201 469 523 2.16e-11 63.2
MS.gene059659.t1 AT5G22570 46.479 71 32 2 142 206 108 178 4.77e-11 61.2
MS.gene059659.t1 AT1G80590 47.761 67 29 2 139 199 76 142 4.86e-11 60.8
MS.gene059659.t1 AT1G66550 47.458 59 29 1 143 199 102 160 5.15e-11 60.8
MS.gene059659.t1 AT1G66550 47.458 59 29 1 143 199 107 165 5.23e-11 60.8

Find 41 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGTGCAGCAGTGTTAA+AGG 0.223332 5.1:+8881037 MS.gene059659:CDS
ATTTCACTTCTGAATCAAAA+TGG 0.248058 5.1:+8879861 MS.gene059659:CDS
GGATGAGGTGATCCTTTAAT+AGG 0.293488 5.1:-8880364 None:intergenic
AAGTGTAGCTCTGAGAATTT+TGG 0.302152 5.1:+8880101 MS.gene059659:CDS
TTCCAACTGATGAATATTCT+TGG 0.308006 5.1:+8880323 MS.gene059659:CDS
TCTCAGGTTTCTTCTTCGTT+TGG 0.320070 5.1:+8880044 MS.gene059659:CDS
TATGGTCAGAAACCTATTAA+AGG 0.332994 5.1:+8880352 MS.gene059659:CDS
ACATCATTGTTGGGGATTAG+AGG 0.351620 5.1:-8879987 None:intergenic
TTATCAATAACATCATTGTT+GGG 0.369596 5.1:-8879996 None:intergenic
CCACAATCACTCCCTCTCTA+TGG 0.372520 5.1:+8881132 MS.gene059659:CDS
CTTATCAATAACATCATTGT+TGG 0.377214 5.1:-8879997 None:intergenic
GAATATTCTTGGAGGAAGTA+TGG 0.385581 5.1:+8880334 MS.gene059659:CDS
TGAGGTTGAAAAGAGTGGTT+AGG 0.422019 5.1:+8880269 MS.gene059659:CDS
AAAACATGTAGAAAGAGCTT+TGG 0.435280 5.1:+8881072 MS.gene059659:CDS
AATCAAAATGGAACAAGAAC+TGG 0.440484 5.1:+8879873 MS.gene059659:CDS
TAAGTAACTACCAACATAGA+TGG 0.441381 5.1:-8881100 None:intergenic
CTCCAAGAATATTCATCAGT+TGG 0.460948 5.1:-8880325 None:intergenic
TGAATTCAATTCAGTTCAAG+AGG 0.508819 5.1:-8881182 None:intergenic
ATGTTGGTAGTTACTTATGA+AGG 0.517787 5.1:+8881106 MS.gene059659:CDS
CTAGTTTCAGAAGTGGAAGT+AGG 0.526285 5.1:-8879930 None:intergenic
GAAAAGAGTGGTTAGGGTAG+CGG 0.527347 5.1:+8880276 MS.gene059659:CDS
TCAGAAGTGGAAGTAGGAGA+AGG 0.528280 5.1:-8879924 None:intergenic
GAGGTTGAAAAGAGTGGTTA+GGG 0.534113 5.1:+8880270 MS.gene059659:CDS
TATCAATAACATCATTGTTG+GGG 0.534993 5.1:-8879995 None:intergenic
CAACTGATGAATATTCTTGG+AGG 0.535323 5.1:+8880326 MS.gene059659:CDS
CCATAGAGAGGGAGTGATTG+TGG 0.545149 5.1:-8881132 None:intergenic
ACTGTCATTGTTCAAAGAAG+AGG 0.551193 5.1:+8880153 MS.gene059659:CDS
TTTGGATGATCCATCTATGT+TGG 0.552858 5.1:+8881090 MS.gene059659:CDS
AGCGGCAATAAGCTTGAAGA+TGG 0.558574 5.1:+8880294 MS.gene059659:CDS
TGAAACAGCAACATCAGCTA+CGG 0.565102 5.1:-8879823 None:intergenic
ATAATCAAGTACCTTGGATG+AGG 0.580943 5.1:-8880379 None:intergenic
GTGGAAGTAGGAGAAGGTAA+AGG 0.586033 5.1:-8879918 None:intergenic
GTAGACTCTAGTTTCAGAAG+TGG 0.596356 5.1:-8879937 None:intergenic
TTAAAGGATCACCTCATCCA+AGG 0.601665 5.1:+8880368 MS.gene059659:CDS
ATTAGCTTCAACCATAGAGA+GGG 0.604376 5.1:-8881143 None:intergenic
AGAGGAGGAATCTGCTGCAA+CGG 0.605875 5.1:-8879969 None:intergenic
TATTAGCTTCAACCATAGAG+AGG 0.607872 5.1:-8881144 None:intergenic
TCATTGTTGGGGATTAGAGG+AGG 0.627905 5.1:-8879984 None:intergenic
TCTGCTGCAACGGAGTAGCA+TGG 0.640412 5.1:-8879959 None:intergenic
AAACGAAGAAGAAACCTGAG+AGG 0.690900 5.1:-8880042 None:intergenic
TCTTCTTTGAACAATGACAG+TGG 0.712784 5.1:-8880151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTACTTAAGTTTTA+AGG - chr5.1:8880722-8880741 None:intergenic 10.0%
!!! TTAGTGATTTTTTTAATTAT+TGG + chr5.1:8880856-8880875 MS.gene059659:intron 10.0%
!! ACTCAATTAAAATATTACTA+AGG - chr5.1:8880418-8880437 None:intergenic 15.0%
!!! AACACATATAAGAAATTTTT+TGG - chr5.1:8880459-8880478 None:intergenic 15.0%
!! ATCTTAAAAGTAGAAGTTTA+TGG - chr5.1:8880808-8880827 None:intergenic 20.0%
!! ATTTAGTACTCAATCTTAAT+AGG - chr5.1:8880896-8880915 None:intergenic 20.0%
!! GGAAATGATTCAAAATTAAA+CGG - chr5.1:8880501-8880520 None:intergenic 20.0%
!! TTAATTACTGTAGAAAAATG+AGG + chr5.1:8880251-8880270 MS.gene059659:intron 20.0%
!! TTATCAATAACATCATTGTT+GGG - chr5.1:8879999-8880018 None:intergenic 20.0%
!!! TTCAAACAATTTTCAAATAC+TGG - chr5.1:8880575-8880594 None:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG + chr5.1:8880863-8880882 MS.gene059659:intron 20.0%
! ACTATGTGCATAAAGAAAAA+GGG - chr5.1:8880522-8880541 None:intergenic 25.0%
! ATACTAATAATCAAGTACCT+TGG - chr5.1:8880388-8880407 None:intergenic 25.0%
! ATTTCACTTCTGAATCAAAA+TGG + chr5.1:8879861-8879880 MS.gene059659:CDS 25.0%
! CTTATCAATAACATCATTGT+TGG - chr5.1:8880000-8880019 None:intergenic 25.0%
! TATCAATAACATCATTGTTG+GGG - chr5.1:8879998-8880017 None:intergenic 25.0%
! TGGTAAATTACAAATCAAGA+TGG - chr5.1:8880548-8880567 None:intergenic 25.0%
!!! AATTTTCAAATACTGGCTTT+TGG - chr5.1:8880568-8880587 None:intergenic 25.0%
!!! AATTTTGGTAATGAAAAGTG+TGG + chr5.1:8880116-8880135 MS.gene059659:CDS 25.0%
AAAAATGAGGTTGAAAAGAG+TGG + chr5.1:8880264-8880283 MS.gene059659:CDS 30.0%
AAAACATGTAGAAAGAGCTT+TGG + chr5.1:8881072-8881091 MS.gene059659:CDS 30.0%
AATCAAAATGGAACAAGAAC+TGG + chr5.1:8879873-8879892 MS.gene059659:CDS 30.0%
CACTATGTGCATAAAGAAAA+AGG - chr5.1:8880523-8880542 None:intergenic 30.0%
TAAGATACGCAAATAACGTT+AGG + chr5.1:8880822-8880841 MS.gene059659:intron 30.0%
TAAGTAACTACCAACATAGA+TGG - chr5.1:8881103-8881122 None:intergenic 30.0%
TAGTACTCAATCTTAATAGG+TGG - chr5.1:8880893-8880912 None:intergenic 30.0%
TATGGTCAGAAACCTATTAA+AGG + chr5.1:8880352-8880371 MS.gene059659:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG + chr5.1:8880323-8880342 MS.gene059659:CDS 30.0%
TTGAGTTATCACTTACTGTA+AGG + chr5.1:8880432-8880451 MS.gene059659:intron 30.0%
TTGTGTTTGTCGTTAGTATA+AGG - chr5.1:8880648-8880667 None:intergenic 30.0%
! CTTTTTCTTTATGCACATAG+TGG + chr5.1:8880521-8880540 MS.gene059659:intron 30.0%
! TGATTTTTCTTATTCCTCTC+AGG + chr5.1:8880028-8880047 MS.gene059659:CDS 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG + chr5.1:8881106-8881125 MS.gene059659:CDS 30.0%
ACGATGATTATTACTACTGC+AGG + chr5.1:8881008-8881027 MS.gene059659:intron 35.0%
ACTGTCATTGTTCAAAGAAG+AGG + chr5.1:8880153-8880172 MS.gene059659:CDS 35.0%
ATAATCAAGTACCTTGGATG+AGG - chr5.1:8880382-8880401 None:intergenic 35.0%
ATCCAAGACAATGACCTAAT+TGG - chr5.1:8880769-8880788 None:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG + chr5.1:8880326-8880345 MS.gene059659:CDS 35.0%
CGATGATTATTACTACTGCA+GGG + chr5.1:8881009-8881028 MS.gene059659:intron 35.0%
CTCCAAGAATATTCATCAGT+TGG - chr5.1:8880328-8880347 None:intergenic 35.0%
CTCGAAGAAAATGTCTATTG+TGG - chr5.1:8880605-8880624 None:intergenic 35.0%
GAATATTCTTGGAGGAAGTA+TGG + chr5.1:8880334-8880353 MS.gene059659:CDS 35.0%
GATGATTATTACTACTGCAG+GGG + chr5.1:8881010-8881029 MS.gene059659:intron 35.0%
TCTTCTTTGAACAATGACAG+TGG - chr5.1:8880154-8880173 None:intergenic 35.0%
TTTGGATGATCCATCTATGT+TGG + chr5.1:8881090-8881109 MS.gene059659:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG - chr5.1:8881146-8881165 None:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG - chr5.1:8881147-8881166 None:intergenic 35.0%
!! TTTTAATTATTGGTCCACGG+TGG + chr5.1:8880866-8880885 MS.gene059659:intron 35.0%
!!! AAGTGTAGCTCTGAGAATTT+TGG + chr5.1:8880101-8880120 MS.gene059659:CDS 35.0%
AAACGAAGAAGAAACCTGAG+AGG - chr5.1:8880045-8880064 None:intergenic 40.0%
ACATCATTGTTGGGGATTAG+AGG - chr5.1:8879990-8880009 None:intergenic 40.0%
CACCAATTAGGTCATTGTCT+TGG + chr5.1:8880764-8880783 MS.gene059659:intron 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG - chr5.1:8879933-8879952 None:intergenic 40.0%
GACAATGACCTAATTGGTGT+CGG - chr5.1:8880763-8880782 None:intergenic 40.0%
GAGGTTGAAAAGAGTGGTTA+GGG + chr5.1:8880270-8880289 MS.gene059659:CDS 40.0%
GGATGAGGTGATCCTTTAAT+AGG - chr5.1:8880367-8880386 None:intergenic 40.0%
TACAAGTGCAGCAGTGTTAA+AGG + chr5.1:8881037-8881056 MS.gene059659:CDS 40.0%
TCTCAGGTTTCTTCTTCGTT+TGG + chr5.1:8880044-8880063 MS.gene059659:CDS 40.0%
TGAAACAGCAACATCAGCTA+CGG - chr5.1:8879826-8879845 None:intergenic 40.0%
TGAGGTTGAAAAGAGTGGTT+AGG + chr5.1:8880269-8880288 MS.gene059659:CDS 40.0%
TTAAAGGATCACCTCATCCA+AGG + chr5.1:8880368-8880387 MS.gene059659:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG - chr5.1:8881067-8881086 None:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG - chr5.1:8879940-8879959 None:intergenic 40.0%
AGCGGCAATAAGCTTGAAGA+TGG + chr5.1:8880294-8880313 MS.gene059659:CDS 45.0%
GAAAAGAGTGGTTAGGGTAG+CGG + chr5.1:8880276-8880295 MS.gene059659:CDS 45.0%
GTGGAAGTAGGAGAAGGTAA+AGG - chr5.1:8879921-8879940 None:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG - chr5.1:8879927-8879946 None:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG - chr5.1:8879987-8880006 None:intergenic 45.0%
!!! GTAATTTATTTTTATTATTT+TGG + chr5.1:8880732-8880751 MS.gene059659:intron 5.0%
AGAGGAGGAATCTGCTGCAA+CGG - chr5.1:8879972-8879991 None:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG + chr5.1:8881132-8881151 MS.gene059659:CDS 50.0%
CCATAGAGAGGGAGTGATTG+TGG - chr5.1:8881135-8881154 None:intergenic 50.0%
TCTTAATAGGTGGTCCACCG+TGG - chr5.1:8880883-8880902 None:intergenic 50.0%
TGGTCGAACCGACACCAATT+AGG + chr5.1:8880752-8880771 MS.gene059659:intron 50.0%
TCTGCTGCAACGGAGTAGCA+TGG - chr5.1:8879962-8879981 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 8879810 8881189 8879810 ID=MS.gene059659
chr5.1 mRNA 8879810 8881189 8879810 ID=MS.gene059659.t1;Parent=MS.gene059659
chr5.1 exon 8879810 8880174 8879810 ID=MS.gene059659.t1.exon1;Parent=MS.gene059659.t1
chr5.1 CDS 8879810 8880174 8879810 ID=cds.MS.gene059659.t1;Parent=MS.gene059659.t1
chr5.1 exon 8880264 8880389 8880264 ID=MS.gene059659.t1.exon2;Parent=MS.gene059659.t1
chr5.1 CDS 8880264 8880389 8880264 ID=cds.MS.gene059659.t1;Parent=MS.gene059659.t1
chr5.1 exon 8881030 8881189 8881030 ID=MS.gene059659.t1.exon3;Parent=MS.gene059659.t1
chr5.1 CDS 8881030 8881189 8881030 ID=cds.MS.gene059659.t1;Parent=MS.gene059659.t1
Gene Sequence

>MS.gene059659

ATGGACTATAAAACCGTAGCTGATGTTGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTCTGAATCAAAATGGAACAAGAACTGGTCATGCACGTTTCAGAAGAGCACCTTTACCTTCTCCTACTTCCACTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCAGATTCCTCCTCTAATCCCCAACAATGATGTTATTGATAAGAATATCATTGATTTTTCTTATTCCTCTCAGGTTTCTTCTTCGTTTGGAAAGTCTTGTGTTTCTTCATGTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTTTGGTAATGAAAAGTGTGGTAGTTCATCTAGCCACTGTCATTGTTCAAAGAAGAGGTATATATGTAGCTCTCAAAATTCGTTTTATTTTTGTTCTTCTTTTTTGAGTTAATTACTTTATGTTAATTTGTTGTTAATTACTGTAGAAAAATGAGGTTGAAAAGAGTGGTTAGGGTAGCGGCAATAAGCTTGAAGATGGCTGATATTCCAACTGATGAATATTCTTGGAGGAAGTATGGTCAGAAACCTATTAAAGGATCACCTCATCCAAGGTACTTGATTATTAGTATTAAGCAACCTTAGTAATATTTTAATTGAGTTATCACTTACTGTAAGGACCAAAAAATTTCTTATATGTGTTACACTAGATTGCTCACTGACCGTTTAATTTTGAATCATTTCCCTTTTTCTTTATGCACATAGTGGACCATCTTGATTTGTAATTTACCAAAAGCCAGTATTTGAAAATTGTTTGAAACTTAAACCACAATAGACATTTTCTTCGAGAAGTAGAAGTTCACGATTGTCCTTATACTAACGACAAACACAAATGACTTGATTGATGCAAGTTCGTCAAAAACAAGAGAAATGAATTTATGTACCTTAAAACTTAAGTAATTTATTTTTATTATTTTGGTCGAACCGACACCAATTAGGTCATTGTCTTGGATGTAAGAATGAGAAAGACCATAAACTTCTACTTTTAAGATACGCAAATAACGTTAGGTGTTATAATGTTTAGTGATTTTTTTAATTATTGGTCCACGGTGGACCACCTATTAAGATTGAGTACTAAATTTAGAGAAAAAAAAAATCATTATTATGCAGTGTTATTGAGTTAAGTTGATTTTGAATTGAGTAGTAATGAATACTAAGTTATCAATTTGTGAACGATGATTATTACTACTGCAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGTTGTCCAGCACGAAAACATGTAGAAAGAGCTTTGGATGATCCATCTATGTTGGTAGTTACTTATGAAGGCGACCACAATCACTCCCTCTCTATGGTTGAAGCTAATAATCTCATCTTAGAATCCTCTTGA
Protein sequence

>MS.gene059659.t1

MDYKTVADVAVSKFKNVISLLNQNGTRTGHARFRRAPLPSPTSTSETRVYHATPLQQIPPLIPNNDVIDKNIIDFSYSSQVSSSFGKSCVSSCSLKRKCSSENFGNEKCGSSSSHCHCSKKRKMRLKRVVRVAAISLKMADIPTDEYSWRKYGQKPIKGSPHPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGDHNHSLSMVEANNLILESS