Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060051.t1 | XP_003620673.1 | 85.2 | 474 | 15 | 3 | 1 | 442 | 1 | 451 | 6.40E-217 | 764.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060051.t1 | Q93ZA0 | 60.8 | 413 | 105 | 4 | 62 | 442 | 45 | 432 | 6.2e-128 | 459.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060051.t1 | G7KPV9 | 85.2 | 474 | 15 | 3 | 1 | 442 | 1 | 451 | 4.6e-217 | 764.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060051 | MS.gene72908 | 0.811753 | 5.98E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060051.t1 | MTR_6g088500 | 85.232 | 474 | 15 | 3 | 1 | 442 | 1 | 451 | 0.0 | 761 |
| MS.gene060051.t1 | MTR_6g088500 | 89.806 | 412 | 9 | 2 | 1 | 402 | 1 | 389 | 0.0 | 710 |
| MS.gene060051.t1 | MTR_6g044600 | 47.632 | 359 | 125 | 7 | 549 | 844 | 1 | 359 | 5.51e-84 | 289 |
| MS.gene060051.t1 | MTR_6g044600 | 46.310 | 393 | 112 | 12 | 562 | 865 | 110 | 492 | 3.55e-67 | 241 |
| MS.gene060051.t1 | MTR_8g044240 | 40.254 | 236 | 89 | 5 | 180 | 401 | 71 | 268 | 1.86e-41 | 155 |
| MS.gene060051.t1 | MTR_6g044110 | 40.000 | 185 | 84 | 7 | 549 | 715 | 1 | 176 | 1.70e-27 | 119 |
| MS.gene060051.t1 | MTR_6g044110 | 36.201 | 279 | 136 | 9 | 591 | 849 | 150 | 406 | 1.00e-26 | 117 |
| MS.gene060051.t1 | MTR_6g034375 | 39.153 | 189 | 75 | 5 | 549 | 732 | 1 | 154 | 2.47e-27 | 119 |
| MS.gene060051.t1 | MTR_6g034375 | 37.748 | 151 | 78 | 2 | 587 | 721 | 169 | 319 | 1.32e-21 | 101 |
| MS.gene060051.t1 | MTR_6g034375 | 43.902 | 123 | 68 | 1 | 606 | 727 | 217 | 339 | 2.02e-19 | 94.4 |
| MS.gene060051.t1 | MTR_6g034375 | 35.111 | 225 | 132 | 4 | 549 | 767 | 1 | 217 | 8.88e-27 | 117 |
| MS.gene060051.t1 | MTR_6g034375 | 43.411 | 129 | 72 | 1 | 594 | 721 | 136 | 264 | 1.12e-22 | 104 |
| MS.gene060051.t1 | MTR_6g034375 | 35.593 | 177 | 108 | 2 | 557 | 727 | 108 | 284 | 6.79e-20 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060051.t1 | AT4G13250 | 60.775 | 413 | 105 | 4 | 62 | 442 | 45 | 432 | 1.27e-159 | 476 |
| MS.gene060051.t1 | AT4G13250 | 60.291 | 413 | 105 | 5 | 62 | 442 | 45 | 430 | 4.52e-156 | 466 |
| MS.gene060051.t1 | AT5G04900 | 39.831 | 236 | 89 | 5 | 180 | 401 | 79 | 275 | 9.54e-40 | 150 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTCTTGTGCTTTAAAA+TGG | 0.145815 | 6.3:-39269372 | None:intergenic |
| ATGAAAGTTCAAAGGGAAAA+TGG | 0.188677 | 6.3:+39234978 | MS.gene060051:CDS |
| CATGTCTTCCTCTGCGTCTT+TGG | 0.188963 | 6.3:-39262947 | None:intergenic |
| TCATCTGGGGTGTTTGGTTT+TGG | 0.190160 | 6.3:+39234852 | MS.gene060051:CDS |
| GCGCGGGAATTTCTTCTTTC+GGG | 0.194989 | 6.3:+39236779 | MS.gene060051:CDS |
| AACAAGATTGCTGTTCAAAT+TGG | 0.227837 | 6.3:+39236000 | MS.gene060051:intron |
| TGGTTCCAAACGTGATATTA+TGG | 0.250635 | 6.3:+39269448 | MS.gene060051:CDS |
| AACCCCTATCATGAGGAATT+TGG | 0.282307 | 6.3:-39268458 | None:intergenic |
| AGAATTTGTCCTGTGATAAC+TGG | 0.283633 | 6.3:+39262913 | MS.gene060051:CDS |
| CCACGGATGCGAGTCGTTAA+AGG | 0.285650 | 6.3:+39246411 | MS.gene060051:CDS |
| TTCAAAGGGAAAATGGGTTT+TGG | 0.285947 | 6.3:+39234985 | MS.gene060051:CDS |
| GGCGCGGGAATTTCTTCTTT+CGG | 0.291797 | 6.3:+39236778 | MS.gene060051:CDS |
| CTCTTATCAGAATAAGGTTT+TGG | 0.293531 | 6.3:-39268804 | None:intergenic |
| GCCAGGCCACATATTTAATA+TGG | 0.294899 | 6.3:+39245474 | MS.gene060051:intron |
| AACTTGGTTATATTGACATT+TGG | 0.298895 | 6.3:+39237103 | MS.gene060051:CDS |
| AATTCTTCATCTGGGGTGTT+TGG | 0.300534 | 6.3:+39234846 | MS.gene060051:CDS |
| CTTATATCGGCAAAGTCTTC+TGG | 0.303340 | 6.3:-39268720 | None:intergenic |
| AAGCGCCTCTTATCAGAATA+AGG | 0.310975 | 6.3:-39268810 | None:intergenic |
| ATTGAAATCTCTCGATTTCA+AGG | 0.313196 | 6.3:+39269223 | MS.gene060051:CDS |
| GTAGATTGTCTCGACAAATT+TGG | 0.313359 | 6.3:+39245396 | MS.gene060051:intron |
| AAGATCTAAACGGAAACTTA+TGG | 0.316299 | 6.3:+39269403 | MS.gene060051:CDS |
| AACAATGCTGGAACAAATAA+AGG | 0.317086 | 6.3:+39245175 | MS.gene060051:CDS |
| GGTAGCTCAAATTCTTCATC+TGG | 0.318654 | 6.3:+39234837 | MS.gene060051:CDS |
| TCCAAAGGATCGTGGTTTAA+AGG | 0.320300 | 6.3:+39269325 | MS.gene060051:CDS |
| TCGTATGCGGCATTATGTTT+TGG | 0.321348 | 6.3:+39246780 | MS.gene060051:CDS |
| AGTATAGACAAGCTGTTGTT+AGG | 0.324288 | 6.3:+39235066 | MS.gene060051:CDS |
| CCGCGAAATGTTGTCATAAC+TGG | 0.325117 | 6.3:+39236450 | MS.gene060051:CDS |
| AAACATTTGACAAACTAAAA+TGG | 0.328317 | 6.3:+39246837 | MS.gene060051:CDS |
| CTTTCTCAAGCAAAAGTTGT+AGG | 0.337639 | 6.3:+39237018 | MS.gene060051:CDS |
| TTCTAGCTGAAAGTTCTAAA+AGG | 0.339001 | 6.3:+39269282 | MS.gene060051:CDS |
| GTTCAGGAAAGGTTCCTAAA+AGG | 0.339138 | 6.3:+39250814 | MS.gene060051:CDS |
| AAATACATGAAGATGGATAA+TGG | 0.341748 | 6.3:+39269485 | MS.gene060051:CDS |
| AATACATGAAGATGGATAAT+GGG | 0.343174 | 6.3:+39269486 | MS.gene060051:CDS |
| AACTTTGCTGTTAGCGAACT+TGG | 0.343712 | 6.3:+39237087 | MS.gene060051:CDS |
| ACTTGGTTATATTGACATTT+GGG | 0.349608 | 6.3:+39237104 | MS.gene060051:CDS |
| TTGTTCGAAGGCGTGCTATC+AGG | 0.351362 | 6.3:+39250781 | MS.gene060051:CDS |
| GGTTGATGAAGTTCTATCTA+AGG | 0.354535 | 6.3:+39235088 | MS.gene060051:CDS |
| CCCTTTAAACCACGATCCTT+TGG | 0.358395 | 6.3:-39269326 | None:intergenic |
| AATAGACATAAGCTTAGAAA+TGG | 0.361347 | 6.3:+39234810 | MS.gene060051:CDS |
| ATTACCAAATTCCTCATGAT+AGG | 0.363087 | 6.3:+39268454 | MS.gene060051:CDS |
| AATATGGATGGTGCAGGTTC+CGG | 0.365648 | 6.3:+39245490 | MS.gene060051:CDS |
| ACATTCTTCTGCTTGAATCT+AGG | 0.366457 | 6.3:-39269260 | None:intergenic |
| CGTGCTATCAGGAAACGTTT+TGG | 0.370218 | 6.3:+39250792 | MS.gene060051:CDS |
| CAGAAGACTTTGCCGATATA+AGG | 0.378132 | 6.3:+39268721 | MS.gene060051:CDS |
| CATAAGCTTAGAAATGGATT+TGG | 0.380679 | 6.3:+39234816 | MS.gene060051:CDS |
| TCCTAGAATCTTGCTTGCCT+TGG | 0.382251 | 6.3:+39246464 | MS.gene060051:CDS |
| TTGTTATCGGCATAGTCTTC+CGG | 0.382730 | 6.3:-39268762 | None:intergenic |
| TGAAAGTTCAAAGGGAAAAT+GGG | 0.384855 | 6.3:+39234979 | MS.gene060051:CDS |
| GACTGAACCTGACTTATCAT+TGG | 0.401027 | 6.3:-39269543 | None:intergenic |
| GTCAGATGGATGCACTGATA+TGG | 0.403741 | 6.3:+39236349 | MS.gene060051:CDS |
| CACTTATCAGCAAAGTCTTC+CGG | 0.410527 | 6.3:-39268846 | None:intergenic |
| ACCTGACTTATCATTGGTCT+CGG | 0.411914 | 6.3:-39269537 | None:intergenic |
| GGACGATGATAGGTGCTAAC+TGG | 0.413266 | 6.3:+39236400 | MS.gene060051:CDS |
| ATGTGGTAAGGACCTTATAT+CGG | 0.414731 | 6.3:-39268733 | None:intergenic |
| TGTGGCCTTAGACAGTTTCA+TGG | 0.420963 | 6.3:+39246005 | MS.gene060051:CDS |
| GGCTCCCATAATATCACGTT+TGG | 0.421114 | 6.3:-39269453 | None:intergenic |
| GGCTCGGAGGAGTTATCATT+GGG | 0.422892 | 6.3:+39236379 | MS.gene060051:CDS |
| ACCAAGGCAAGCAAGATTCT+AGG | 0.424125 | 6.3:-39246465 | None:intergenic |
| GCAATTGGATTTCAGATGTC+AGG | 0.424710 | 6.3:+39236063 | MS.gene060051:CDS |
| ACATTCTTGTGCTTTAAAAT+GGG | 0.428018 | 6.3:-39269371 | None:intergenic |
| CTCTTATCGACATAGCATTC+CGG | 0.429010 | 6.3:-39268594 | None:intergenic |
| GTGTGCAGTACAAGGGGATT+GGG | 0.430050 | 6.3:+39236746 | MS.gene060051:intron |
| AAGGGGATTGGGTAAAGCTT+TGG | 0.430750 | 6.3:+39236757 | MS.gene060051:CDS |
| TAGTGTTCCGGCATTTGATC+AGG | 0.436442 | 6.3:-39268624 | None:intergenic |
| TGGCTCGGAGGAGTTATCAT+TGG | 0.442316 | 6.3:+39236378 | MS.gene060051:CDS |
| CTCTTGTCACTGTAGTGTTC+CGG | 0.444692 | 6.3:-39268636 | None:intergenic |
| CCAAAGGATCGTGGTTTAAA+GGG | 0.444942 | 6.3:+39269326 | MS.gene060051:CDS |
| ACTGGTGTCATCCTTGCAAT+TGG | 0.445337 | 6.3:+39236048 | MS.gene060051:CDS |
| TGTGTGCAGTACAAGGGGAT+TGG | 0.447496 | 6.3:+39236745 | MS.gene060051:intron |
| AAAGTTCTAAAAGGAAACTT+GGG | 0.450938 | 6.3:+39269291 | MS.gene060051:CDS |
| ATGCGAGTCGTTAAAGGAAC+AGG | 0.454121 | 6.3:+39246417 | MS.gene060051:CDS |
| AAACAATTATAGAAGTGGTT+GGG | 0.455945 | 6.3:+39268362 | MS.gene060051:CDS |
| TTCCGTTTAGATCTTTCAGC+TGG | 0.455971 | 6.3:-39269395 | None:intergenic |
| ATGTGGTAAGGACTTGTTAT+CGG | 0.457574 | 6.3:-39268775 | None:intergenic |
| TTGATATCTTCGTCACTGAA+TGG | 0.461875 | 6.3:-39245214 | None:intergenic |
| GTAGCTCAAATTCTTCATCT+GGG | 0.461951 | 6.3:+39234838 | MS.gene060051:CDS |
| GTGATCCATGAAACTGTCTA+AGG | 0.462266 | 6.3:-39246010 | None:intergenic |
| GTTATCATTGGGACGATGAT+AGG | 0.465035 | 6.3:+39236390 | MS.gene060051:CDS |
| AGGTGCTAACTGGGTGTTTG+AGG | 0.466216 | 6.3:+39236410 | MS.gene060051:CDS |
| AAAACAATTATAGAAGTGGT+TGG | 0.466845 | 6.3:+39268361 | MS.gene060051:CDS |
| AGTTGGCACGCTTCTGTAAG+AGG | 0.466919 | 6.3:+39268553 | MS.gene060051:CDS |
| TTATGCCGTTCAATGATGAT+AGG | 0.468364 | 6.3:+39268388 | MS.gene060051:CDS |
| GAAAGTTCTAAAAGGAAACT+TGG | 0.469289 | 6.3:+39269290 | MS.gene060051:CDS |
| CAAAACCTTATTCTGATAAG+AGG | 0.474115 | 6.3:+39268805 | MS.gene060051:CDS |
| GGTTCCAAACGTGATATTAT+GGG | 0.480181 | 6.3:+39269449 | MS.gene060051:CDS |
| TTACCAAATTCCTCATGATA+GGG | 0.481510 | 6.3:+39268455 | MS.gene060051:CDS |
| GTATAGACAAGCTGTTGTTA+GGG | 0.482674 | 6.3:+39235067 | MS.gene060051:CDS |
| TTCAATTTAGAATCTACAGC+TGG | 0.484202 | 6.3:-39269206 | None:intergenic |
| AGGAGGAGTCAAGTAATTGA+TGG | 0.484820 | 6.3:-39246445 | None:intergenic |
| ACAGTTGCTTGCACAGACTC+AGG | 0.485752 | 6.3:-39236931 | None:intergenic |
| TTTCAAAACAATTATAGAAG+TGG | 0.487475 | 6.3:+39268357 | MS.gene060051:CDS |
| CGGAATGCTATGTCGATAAG+AGG | 0.492079 | 6.3:+39268595 | MS.gene060051:CDS |
| CCAGTTATGACAACATTTCG+CGG | 0.492827 | 6.3:-39236450 | None:intergenic |
| AAATGAAATGAAAGTTCAAA+GGG | 0.494750 | 6.3:+39234971 | MS.gene060051:CDS |
| CCTGACTTATCATTGGTCTC+GGG | 0.495496 | 6.3:-39269536 | None:intergenic |
| TTGGGCGTTTGATGCGGCAA+AGG | 0.508255 | 6.3:-39268660 | None:intergenic |
| ATATTTAATATGGATGGTGC+AGG | 0.508666 | 6.3:+39245484 | MS.gene060051:CDS |
| CAGAGGTGTGCTAGAGCCTC+CGG | 0.510047 | 6.3:-39245509 | None:intergenic |
| GAGTGCAAGCGATCGAAAGT+AGG | 0.517173 | 6.3:+39246041 | MS.gene060051:CDS |
| TGGAGATAAATACATGAAGA+TGG | 0.517228 | 6.3:+39269478 | MS.gene060051:CDS |
| GACGGCATTGCCAATGCAGT+TGG | 0.517873 | 6.3:+39236979 | MS.gene060051:CDS |
| CACCATCCATATTAAATATG+TGG | 0.518027 | 6.3:-39245480 | None:intergenic |
| GAGACTTGGTCGAAGGGAAG+TGG | 0.518431 | 6.3:+39262985 | MS.gene060051:CDS |
| CGTGATATTATGGGAGCCGT+TGG | 0.519165 | 6.3:+39269458 | MS.gene060051:CDS |
| GGCTGATGATGTTCAGAGAT+TGG | 0.520209 | 6.3:+39237062 | MS.gene060051:CDS |
| AACACTGGTGCAAAGGATGA+TGG | 0.525656 | 6.3:+39269428 | MS.gene060051:CDS |
| GCCATTCGATGATTTCAGTC+GGG | 0.526268 | 6.3:+39268410 | MS.gene060051:CDS |
| TTCCAGCTGAAAGATCTAAA+CGG | 0.526517 | 6.3:+39269393 | MS.gene060051:CDS |
| AAAATGAAATGAAAGTTCAA+AGG | 0.528763 | 6.3:+39234970 | MS.gene060051:CDS |
| TCACTGCTTGTTTGATGATG+AGG | 0.528928 | 6.3:+39246487 | MS.gene060051:CDS |
| CAGTGACGAAGATATCAAAC+AGG | 0.530500 | 6.3:+39245219 | MS.gene060051:CDS |
| GAATTTGTCCTGTGATAACT+GGG | 0.532946 | 6.3:+39262914 | MS.gene060051:CDS |
| CTGATATGGTATAGTTGGCT+CGG | 0.534595 | 6.3:+39236363 | MS.gene060051:CDS |
| TCCATATTAAATATGTGGCC+TGG | 0.535768 | 6.3:-39245475 | None:intergenic |
| GGCCACATATTTAATATGGA+TGG | 0.535770 | 6.3:+39245478 | MS.gene060051:CDS |
| CCCGAGACCAATGATAAGTC+AGG | 0.538183 | 6.3:+39269536 | MS.gene060051:CDS |
| TGAAAATAAGAGTCGAGACT+TGG | 0.539211 | 6.3:+39262971 | MS.gene060051:CDS |
| CAAAGATGAACCAACTGCAT+TGG | 0.539792 | 6.3:-39236989 | None:intergenic |
| CCTTCACAAAATTCGAGAGC+AGG | 0.541330 | 6.3:-39236904 | None:intergenic |
| ATGCACTGATATGGTATAGT+TGG | 0.541778 | 6.3:+39236358 | MS.gene060051:CDS |
| ATTGGGTAAAGCTTTGGCGC+GGG | 0.542136 | 6.3:+39236763 | MS.gene060051:CDS |
| CTTCATGTATTTATCTCCAA+CGG | 0.542495 | 6.3:-39269474 | None:intergenic |
| ACTCAACAGATAAACAATGC+TGG | 0.542977 | 6.3:+39245163 | MS.gene060051:intron |
| TACCAAATTCCTCATGATAG+GGG | 0.543970 | 6.3:+39268456 | MS.gene060051:CDS |
| AAGTTCTGTGAGAACCATGC+CGG | 0.550900 | 6.3:-39246081 | None:intergenic |
| TGTCTATTCAAATTACACTC+TGG | 0.552862 | 6.3:-39234795 | None:intergenic |
| TGCTGATGTGTGATGTGATG+AGG | 0.552890 | 6.3:-39268496 | None:intergenic |
| CTTGACTTAGCATTGACCTC+GGG | 0.554961 | 6.3:-39269605 | None:intergenic |
| TGAAGATGGTGGTGATGTGA+AGG | 0.555025 | 6.3:+39234923 | MS.gene060051:CDS |
| AAGTCTTCCGGTGTTTGTTG+TGG | 0.557289 | 6.3:-39268834 | None:intergenic |
| CGAGCTTGAGGAAAATCTAA+AGG | 0.561317 | 6.3:+39236957 | MS.gene060051:CDS |
| CCTTTAACGACTCGCATCCG+TGG | 0.562863 | 6.3:-39246411 | None:intergenic |
| GCCGCATACGAAACATATGA+TGG | 0.562911 | 6.3:-39246768 | None:intergenic |
| AGGGCTTTCAAGAGTGAAGA+TGG | 0.562950 | 6.3:+39234909 | MS.gene060051:CDS |
| GGCCATTCGATGATTTCAGT+CGG | 0.563030 | 6.3:+39268409 | MS.gene060051:CDS |
| AAGTCTTCTGGCGTTTGAAG+TGG | 0.564344 | 6.3:-39268708 | None:intergenic |
| AAACCTTTGGGCGTTTGATG+CGG | 0.566731 | 6.3:-39268666 | None:intergenic |
| TATGGATAACACTGGTGCAA+AGG | 0.568680 | 6.3:+39269421 | MS.gene060051:CDS |
| CAGTTGCTTGCACAGACTCA+GGG | 0.570639 | 6.3:-39236930 | None:intergenic |
| ACGCTTAAAAGATCGAAAGT+TGG | 0.571704 | 6.3:+39268536 | MS.gene060051:CDS |
| GCTGATGTGTGATGTGATGA+GGG | 0.576143 | 6.3:-39268495 | None:intergenic |
| TGTTGACATGGTTCAATCCG+AGG | 0.577541 | 6.3:+39263014 | MS.gene060051:CDS |
| TAGCATTCCGGCCTTTGACA+TGG | 0.578072 | 6.3:-39268582 | None:intergenic |
| AGTTCTGTGAGAACCATGCC+GGG | 0.578606 | 6.3:-39246080 | None:intergenic |
| GCATTTACCATGTCAAAGGC+CGG | 0.579548 | 6.3:+39268575 | MS.gene060051:CDS |
| TTGCCGCATCAAACGCCCAA+AGG | 0.580773 | 6.3:+39268663 | MS.gene060051:CDS |
| AAGAGTCGAGACTTGGTCGA+AGG | 0.582078 | 6.3:+39262978 | MS.gene060051:CDS |
| TCGTCACTGAATGGAAGCAA+TGG | 0.586611 | 6.3:-39245205 | None:intergenic |
| CATTGCTTGCGATGTTTGTG+AGG | 0.587040 | 6.3:+39237041 | MS.gene060051:CDS |
| GGTGTTCATACAGCATCTCC+CGG | 0.587577 | 6.3:+39246062 | MS.gene060051:CDS |
| TTTGAGGATTATTGTCGCGA+AGG | 0.587777 | 6.3:+39236426 | MS.gene060051:CDS |
| ATACATGAAGATGGATAATG+GGG | 0.590780 | 6.3:+39269487 | MS.gene060051:CDS |
| TGGGGATAACACTGGTCCAA+AGG | 0.593249 | 6.3:+39269310 | MS.gene060051:CDS |
| AGCAACTGTCAACGAGCTTG+AGG | 0.594387 | 6.3:+39236945 | MS.gene060051:CDS |
| AGCTATGGTTCTACAAAATG+TGG | 0.596066 | 6.3:+39245987 | MS.gene060051:intron |
| AGAGTCGAGACTTGGTCGAA+GGG | 0.596600 | 6.3:+39262979 | MS.gene060051:CDS |
| CGGAAACTTATGGATAACAC+TGG | 0.598529 | 6.3:+39269413 | MS.gene060051:CDS |
| TAGCTCAAATTCTTCATCTG+GGG | 0.599158 | 6.3:+39234839 | MS.gene060051:CDS |
| AGAGGCATTTACCATGTCAA+AGG | 0.600049 | 6.3:+39268571 | MS.gene060051:CDS |
| GTTTCATGGATCACTATTGA+CGG | 0.600118 | 6.3:+39246019 | MS.gene060051:CDS |
| TCTGTAAACCCAGTTATCAC+AGG | 0.600135 | 6.3:-39262922 | None:intergenic |
| ATTGTGACCTTGATGAGCAC+TGG | 0.600311 | 6.3:+39236030 | MS.gene060051:CDS |
| TTGCTAGAACATTAGTTCCA+CGG | 0.600648 | 6.3:+39246394 | MS.gene060051:intron |
| GACGATGATAGGTGCTAACT+GGG | 0.600677 | 6.3:+39236401 | MS.gene060051:CDS |
| TGAAGGTGGAGATAGTCAGA+TGG | 0.600721 | 6.3:+39236335 | MS.gene060051:intron |
| AAGTGGAAATTCTGTTGACA+TGG | 0.601890 | 6.3:+39263002 | MS.gene060051:CDS |
| GCAGTTACCTGATCAAATGC+CGG | 0.604522 | 6.3:+39268617 | MS.gene060051:CDS |
| ATTGTCTCGACAAATTTGGT+CGG | 0.608484 | 6.3:+39245400 | MS.gene060051:CDS |
| ACATCTGAAATCCAATTGCA+AGG | 0.608628 | 6.3:-39236059 | None:intergenic |
| TCCATCATATGTTTCGTATG+CGG | 0.609525 | 6.3:+39246767 | MS.gene060051:CDS |
| TCATACAGCATCTCCCGGCA+TGG | 0.610198 | 6.3:+39246067 | MS.gene060051:CDS |
| GATTGGGTAAAGCTTTGGCG+CGG | 0.615142 | 6.3:+39236762 | MS.gene060051:CDS |
| ATGGATGGTGCAGGTTCCGG+AGG | 0.616000 | 6.3:+39245493 | MS.gene060051:CDS |
| TCCCGACTGAAATCATCGAA+TGG | 0.617786 | 6.3:-39268411 | None:intergenic |
| GATGACACCAGTGCTCATCA+AGG | 0.621060 | 6.3:-39236037 | None:intergenic |
| AAATCTCTAGTCCAAAGACC+TGG | 0.624726 | 6.3:+39269566 | MS.gene060051:CDS |
| AATACTCACACGGCTGTCAG+AGG | 0.628482 | 6.3:-39245526 | None:intergenic |
| CATCAAACAAGCAGTGACCA+AGG | 0.633275 | 6.3:-39246481 | None:intergenic |
| CTTGAGGAAAATCTAAAGGA+CGG | 0.633662 | 6.3:+39236961 | MS.gene060051:CDS |
| AGTTCCCCGATTCAGCAACA+AGG | 0.637537 | 6.3:+39269178 | MS.gene060051:intron |
| AATGGCCTATCATCATTGAA+CGG | 0.637868 | 6.3:-39268393 | None:intergenic |
| AGGAAACTTGGGGATAACAC+TGG | 0.641214 | 6.3:+39269302 | MS.gene060051:CDS |
| GCGCTTACCACAACAAACAC+CGG | 0.644089 | 6.3:+39268827 | MS.gene060051:CDS |
| ATTAAAATCATCAAAACCCG+AGG | 0.645189 | 6.3:+39269589 | MS.gene060051:CDS |
| AGTTAGGCGCCTAATCAGCA+AGG | 0.648087 | 6.3:-39246804 | None:intergenic |
| CGGAACACTACAGTGACAAG+AGG | 0.650935 | 6.3:+39268637 | MS.gene060051:CDS |
| TCAGCAAAACCCCTATCATG+AGG | 0.653107 | 6.3:-39268465 | None:intergenic |
| ACTTGACTTAGCATTGACCT+CGG | 0.658500 | 6.3:-39269606 | None:intergenic |
| GAAATGTTGTCATAACTGGA+AGG | 0.660308 | 6.3:+39236454 | MS.gene060051:CDS |
| AGTCGTTAAAGGAACAGGCA+AGG | 0.664810 | 6.3:+39246422 | MS.gene060051:CDS |
| AACACTGGTCCAAAGGATCG+TGG | 0.665937 | 6.3:+39269317 | MS.gene060051:CDS |
| GTGTAATTGTTACTTCACGA+AGG | 0.670168 | 6.3:+39236807 | MS.gene060051:CDS |
| AAGGCAAGCAAGATTCTAGG+AGG | 0.670870 | 6.3:-39246462 | None:intergenic |
| ATATGGTATAGTTGGCTCGG+AGG | 0.673650 | 6.3:+39236366 | MS.gene060051:CDS |
| GCATGGCTTCTCGAGTACAA+AGG | 0.673913 | 6.3:-39245429 | None:intergenic |
| TACAGAAACCAAAGACGCAG+AGG | 0.683368 | 6.3:+39262939 | MS.gene060051:CDS |
| TCCCCGATTCAGCAACAAGG+AGG | 0.686626 | 6.3:+39269181 | MS.gene060051:intron |
| AAGTTCTAAAAGGAAACTTG+GGG | 0.691252 | 6.3:+39269292 | MS.gene060051:CDS |
| GCTTTCAAGAGTGAAGATGG+TGG | 0.735744 | 6.3:+39234912 | MS.gene060051:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 39234762 | 39269723 | 39234762 | ID=MS.gene060051 |
| chr6.3 | mRNA | 39234762 | 39269723 | 39234762 | ID=MS.gene060051.t1;Parent=MS.gene060051 |
| chr6.3 | exon | 39234762 | 39235109 | 39234762 | ID=MS.gene060051.t1.exon1;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39234762 | 39235109 | 39234762 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39236006 | 39236084 | 39236006 | ID=MS.gene060051.t1.exon2;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39236006 | 39236084 | 39236006 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39236340 | 39236475 | 39236340 | ID=MS.gene060051.t1.exon3;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39236340 | 39236475 | 39236340 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39236754 | 39236828 | 39236754 | ID=MS.gene060051.t1.exon4;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39236754 | 39236828 | 39236754 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39236861 | 39237125 | 39236861 | ID=MS.gene060051.t1.exon5;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39236861 | 39237125 | 39236861 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39245172 | 39245240 | 39245172 | ID=MS.gene060051.t1.exon6;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39245172 | 39245240 | 39245172 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39245400 | 39245444 | 39245400 | ID=MS.gene060051.t1.exon7;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39245400 | 39245444 | 39245400 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39245475 | 39245539 | 39245475 | ID=MS.gene060051.t1.exon8;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39245475 | 39245539 | 39245475 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39245989 | 39246111 | 39245989 | ID=MS.gene060051.t1.exon9;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39245989 | 39246111 | 39245989 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39246401 | 39246508 | 39246401 | ID=MS.gene060051.t1.exon10;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39246401 | 39246508 | 39246401 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39246754 | 39246881 | 39246754 | ID=MS.gene060051.t1.exon11;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39246754 | 39246881 | 39246754 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39250778 | 39250835 | 39250778 | ID=MS.gene060051.t1.exon12;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39250778 | 39250835 | 39250778 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39262912 | 39263059 | 39262912 | ID=MS.gene060051.t1.exon13;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39262912 | 39263059 | 39262912 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39268348 | 39268865 | 39268348 | ID=MS.gene060051.t1.exon14;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39268348 | 39268865 | 39268348 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39269193 | 39269621 | 39269193 | ID=MS.gene060051.t1.exon15;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39269193 | 39269621 | 39269193 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| chr6.3 | exon | 39269717 | 39269723 | 39269717 | ID=MS.gene060051.t1.exon16;Parent=MS.gene060051.t1 |
| chr6.3 | CDS | 39269717 | 39269723 | 39269717 | ID=cds.MS.gene060051.t1;Parent=MS.gene060051.t1 |
| Gene Sequence |
| Protein sequence |
