AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060059

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060059.t1 MTR_3g101030 79.059 425 69 4 39 443 5 429 0.0 662
MS.gene060059.t1 MTR_3g101050 72.707 447 67 7 1 442 1 397 0.0 602
MS.gene060059.t1 MTR_3g101010 80.157 383 69 3 66 443 9 389 0.0 590
MS.gene060059.t1 MTR_3g018740 69.816 381 109 3 65 441 8 386 0.0 517
MS.gene060059.t1 MTR_8g027395 66.499 397 125 4 49 443 7 397 0.0 516
MS.gene060059.t1 MTR_4g045707 67.179 390 121 4 57 443 3 388 4.93e-180 508
MS.gene060059.t1 MTR_8g461160 65.306 392 129 2 57 441 1 392 2.09e-177 501
MS.gene060059.t1 MTR_8g027420 66.230 382 113 4 64 443 8 375 3.19e-174 493
MS.gene060059.t1 MTR_3g101180 64.573 398 126 5 57 441 3 398 1.27e-172 489
MS.gene060059.t1 MTR_7g451890 62.338 385 138 2 66 443 18 402 8.97e-168 477
MS.gene060059.t1 MTR_3g048000 63.117 385 120 4 60 441 25 390 2.88e-167 476
MS.gene060059.t1 MTR_4g088525 65.385 364 121 3 81 442 8 368 4.30e-165 469
MS.gene060059.t1 MTR_7g050810 61.917 386 138 3 66 443 20 404 5.24e-165 470
MS.gene060059.t1 MTR_7g047780 61.818 385 140 2 66 443 18 402 8.33e-165 470
MS.gene060059.t1 MTR_4g088535 64.752 383 112 6 58 438 5 366 1.14e-163 466
MS.gene060059.t1 MTR_7g050750 61.299 385 142 2 66 443 12 396 1.23e-162 464
MS.gene060059.t1 MTR_2g046030 63.185 383 129 5 66 441 9 386 3.77e-162 462
MS.gene060059.t1 MTR_3g101130 60.881 386 144 3 62 443 7 389 7.89e-161 459
MS.gene060059.t1 MTR_2g045980 62.924 383 130 5 66 441 9 386 8.10e-161 459
MS.gene060059.t1 MTR_3g015620 62.141 383 114 5 66 441 20 378 3.74e-151 434
MS.gene060059.t1 MTR_3g100995 75.591 254 60 1 192 443 11 264 1.86e-139 400
MS.gene060059.t1 MTR_3g102920 58.047 379 116 4 70 441 66 408 1.42e-138 403
MS.gene060059.t1 MTR_3g101200 54.743 369 139 4 78 441 45 390 7.25e-126 370
MS.gene060059.t1 MTR_3g101190 54.372 366 101 5 83 443 8 312 1.72e-123 361
MS.gene060059.t1 MTR_3g018747 68.340 259 63 3 188 441 9 253 7.46e-119 347
MS.gene060059.t1 MTR_3g100010 57.764 322 88 2 85 373 38 344 1.72e-115 342
MS.gene060059.t1 MTR_7g050830 55.016 309 108 2 68 356 22 319 3.52e-111 330
MS.gene060059.t1 MTR_3g015760 60.507 276 98 4 173 441 8 279 4.47e-99 298
MS.gene060059.t1 MTR_3g111160 67.943 209 61 3 240 443 13 220 5.71e-88 267
MS.gene060059.t1 MTR_3g100520 61.644 219 70 3 229 443 1 209 8.18e-87 264
MS.gene060059.t1 MTR_3g114310 42.317 397 205 11 64 443 21 410 3.16e-86 270
MS.gene060059.t1 MTR_3g101110 60.251 239 60 4 188 417 68 280 5.24e-86 265
MS.gene060059.t1 MTR_3g099970 65.641 195 50 2 188 381 20 198 4.06e-82 251
MS.gene060059.t1 MTR_2g046410 63.366 202 65 4 248 441 147 347 2.05e-77 244
MS.gene060059.t1 MTR_3g101020 66.848 184 35 2 262 443 1 160 2.20e-77 238
MS.gene060059.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 2.69e-61 197
MS.gene060059.t1 MTR_3g101150 61.146 157 52 2 294 441 1 157 1.68e-58 189
MS.gene060059.t1 MTR_3g102870 59.211 152 60 1 251 400 1 152 2.37e-55 182
MS.gene060059.t1 MTR_3g100990 58.108 148 59 2 66 213 9 153 6.54e-44 160
MS.gene060059.t1 MTR_4g093550 62.195 82 29 1 66 147 10 89 5.29e-24 95.9
MS.gene060059.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 7.37e-20 85.9
MS.gene060059.t1 MTR_3g101140 61.538 65 21 1 383 443 52 116 2.44e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060059.t1 AT1G47710 51.852 405 183 6 44 441 18 417 7.03e-142 412
MS.gene060059.t1 AT1G47710 52.551 392 175 5 57 441 3 390 9.85e-142 411
MS.gene060059.t1 AT3G45220 48.205 390 179 7 66 440 9 390 2.69e-121 359
MS.gene060059.t1 AT2G25240 47.244 381 188 6 66 440 9 382 2.65e-115 343
MS.gene060059.t1 AT2G26390 46.094 384 192 5 66 440 9 386 1.07e-112 337
MS.gene060059.t1 AT1G62170 42.623 366 182 4 85 442 88 433 5.66e-96 295
MS.gene060059.t1 AT1G64030 40.682 381 202 6 66 440 9 371 2.94e-92 284
MS.gene060059.t1 AT2G14540 41.053 380 200 5 66 440 37 397 5.80e-92 284
MS.gene060059.t1 AT1G62170 39.098 399 182 5 85 442 88 466 3.85e-89 279
MS.gene060059.t1 AT2G35580 41.398 372 188 8 81 440 18 371 1.28e-88 275
MS.gene060059.t1 AT1G64010 45.794 214 95 4 229 440 1 195 1.13e-57 189
MS.gene060059.t1 AT1G64010 45.729 199 87 4 244 440 2 181 8.74e-52 173
MS.gene060059.t1 AT1G62160 40.782 179 86 4 266 442 60 220 5.36e-36 132
MS.gene060059.t1 AT1G63280 52.174 115 51 2 188 300 8 120 1.44e-31 117
MS.gene060059.t1 AT1G51330 49.550 111 53 2 187 294 30 140 2.24e-23 97.4
MS.gene060059.t1 AT1G64020 33.333 111 71 3 70 179 13 121 9.72e-13 65.1

Find 106 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69030111 MS.gene060059:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69030212 MS.gene060059:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69029943 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69030692 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69029707 MS.gene060059:CDS
CGCATCTGATGCAGTCAGTA+TGG 0.276049 7.2:-69029593 MS.gene060059:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69030815 None:intergenic
CCCAACTTTGCTTGAGAAGC+TGG 0.289017 7.2:-69029872 MS.gene060059:CDS
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69029781 MS.gene060059:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69029481 MS.gene060059:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69030569 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69029782 None:intergenic
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:-69029851 MS.gene060059:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69030209 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69030482 MS.gene060059:CDS
GTGCTAAGCATCATCGCTTC+TGG 0.361357 7.2:-69030636 MS.gene060059:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69029807 MS.gene060059:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69029781 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69030707 None:intergenic
GGGAGCCCATCTTGTGCATT+TGG 0.377583 7.2:+69029892 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69029612 None:intergenic
ATTCAAAAGGCGAAAATCAT+AGG 0.386713 7.2:+69030050 None:intergenic
ACTGGAACAATCATCTTTGT+TGG 0.397026 7.2:-69029505 MS.gene060059:CDS
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69030449 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69030448 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69030685 MS.gene060059:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69030435 None:intergenic
TTCCTTCCAAATGCACAAGA+TGG 0.428926 7.2:-69029898 MS.gene060059:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.437737 7.2:+69029871 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69029500 MS.gene060059:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69029535 None:intergenic
TTTGAATGGAAACTCAGTTA+AGG 0.446012 7.2:-69030034 MS.gene060059:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69029824 MS.gene060059:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69030802 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69029637 MS.gene060059:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.453776 7.2:+69030037 None:intergenic
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69029536 None:intergenic
TCAAAGAACTTCTTCCTCTA+GGG 0.473973 7.2:-69030164 MS.gene060059:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69030444 MS.gene060059:CDS
GTGTTCCAGTAACTCAGATT+CGG 0.474362 7.2:+69029846 None:intergenic
ATCAAAGAACTTCTTCCTCT+AGG 0.484467 7.2:-69030165 MS.gene060059:CDS
ATGATTAGAGAAGAATTGAC+TGG 0.486911 7.2:-69029523 MS.gene060059:CDS
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69030481 MS.gene060059:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69030501 None:intergenic
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69030603 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69030211 MS.gene060059:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69030574 None:intergenic
TCCTTCCAAATGCACAAGAT+GGG 0.496874 7.2:-69029897 MS.gene060059:CDS
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69029947 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69030825 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69029480 MS.gene060059:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69030611 None:intergenic
CCAGCTTCTCAAGCAAAGTT+GGG 0.508851 7.2:+69029872 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69030602 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:+69030749 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69030718 None:intergenic
ATCATCGCTTCTGGCTCCGA+GGG 0.524555 7.2:-69030627 MS.gene060059:CDS
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69030654 None:intergenic
GCCCATCTTGTGCATTTGGA+AGG 0.526536 7.2:+69029896 None:intergenic
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69029952 MS.gene060059:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69030104 MS.gene060059:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69030577 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69030539 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69030545 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69029748 MS.gene060059:CDS
GAAGAAGCAGAGAACAACTT+TGG 0.549721 7.2:+69030899 None:intergenic
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69030512 MS.gene060059:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69030516 MS.gene060059:CDS
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:+69030745 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69029817 None:intergenic
GCTACAAAGTCTAGTCGAGT+TGG 0.564663 7.2:+69029565 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69030791 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69030489 MS.gene060059:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69029817 MS.gene060059:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69030388 MS.gene060059:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69030528 MS.gene060059:CDS
GCATCTGATGCAGTCAGTAT+GGG 0.576573 7.2:-69029592 MS.gene060059:CDS
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:+69030746 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69030604 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69029715 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69029469 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69030513 MS.gene060059:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69030532 None:intergenic
CATCATCGCTTCTGGCTCCG+AGG 0.591530 7.2:-69030628 MS.gene060059:CDS
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69030719 None:intergenic
GCAGAGAACAACTTTGGCGA+TGG 0.601250 7.2:+69030905 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69030560 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69029755 MS.gene060059:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69030500 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69030733 None:intergenic
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:+69030760 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69030883 MS.gene060059:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69030792 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69030478 MS.gene060059:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69030192 MS.gene060059:CDS
ACTGACTGCATCAGATGCGG+TGG 0.645350 7.2:+69029597 None:intergenic
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:+69030763 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.649781 7.2:-69030160 MS.gene060059:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69030713 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69030143 MS.gene060059:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69030563 None:intergenic
CATACTGACTGCATCAGATG+CGG 0.683885 7.2:+69029594 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69029743 MS.gene060059:CDS
AACTCGACTAGACTTTGTAG+CGG 0.708512 7.2:-69029563 MS.gene060059:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69030489 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69030150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69030154-69030173 MS.gene060059:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69030093-69030112 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69030628-69030647 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69030163-69030182 MS.gene060059:CDS 20.0%
!!! GAATAATAATTTTGATGCTT+CGG - chr7.2:69030325-69030344 MS.gene060059:intron 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69029722-69029741 MS.gene060059:CDS 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69030626-69030645 MS.gene060059:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69030629-69030648 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69030874-69030893 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69030875-69030894 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69030770-69030789 MS.gene060059:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69030062-69030081 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69030061-69030080 None:intergenic 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69030742-69030761 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69030437-69030456 MS.gene060059:CDS 25.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69029585-69029604 None:intergenic 30.0%
ATGATTAGAGAAGAATTGAC+TGG - chr7.2:69030884-69030903 MS.gene060059:CDS 30.0%
ATTCAAAAGGCGAAAATCAT+AGG + chr7.2:69030360-69030379 None:intergenic 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69029718-69029737 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69030196-69030215 MS.gene060059:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69030373-69030392 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69030195-69030214 MS.gene060059:CDS 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69030467-69030486 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69030373-69030392 MS.gene060059:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69029563-69029582 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69030060-69030079 None:intergenic 30.0%
! TATGATTTTCGCCTTTTGAA+TGG - chr7.2:69030359-69030378 MS.gene060059:intron 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69029703-69029722 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69029595-69029614 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69030907-69030926 MS.gene060059:CDS 35.0%
ACTGGAACAATCATCTTTGT+TGG - chr7.2:69030902-69030921 MS.gene060059:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69030201-69030220 None:intergenic 35.0%
ATCAAAGAACTTCTTCCTCT+AGG - chr7.2:69030242-69030261 MS.gene060059:intron 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69030700-69030719 MS.gene060059:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69029961-69029980 None:intergenic 35.0%
TCAAAGAACTTCTTCCTCTA+GGG - chr7.2:69030243-69030262 MS.gene060059:intron 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69029963-69029982 MS.gene060059:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69030652-69030671 MS.gene060059:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69029962-69029981 None:intergenic 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69029570-69029589 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69029975-69029994 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69029807-69029826 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69030702-69030721 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69030019-69030038 MS.gene060059:CDS 35.0%
AACTCGACTAGACTTTGTAG+CGG - chr7.2:69030844-69030863 MS.gene060059:CDS 40.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69030600-69030619 MS.gene060059:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69029618-69029637 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69029756-69029775 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69029926-69029945 MS.gene060059:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69030583-69030602 MS.gene060059:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69030593-69030612 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69030590-69030609 MS.gene060059:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69030463-69030482 None:intergenic 40.0%
GAAGAAGCAGAGAACAACTT+TGG + chr7.2:69029511-69029530 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69030296-69030315 MS.gene060059:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69029879-69029898 MS.gene060059:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69030564-69030583 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69029925-69029944 MS.gene060059:CDS 40.0%
TCCTTCCAAATGCACAAGAT+GGG - chr7.2:69030510-69030529 MS.gene060059:CDS 40.0%
TTCCTTCCAAATGCACAAGA+TGG - chr7.2:69030509-69030528 MS.gene060059:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69029886-69029905 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69029808-69029827 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69030686-69030705 MS.gene060059:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69029806-69029825 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69030683-69030702 MS.gene060059:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69029692-69029711 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69029691-69029710 None:intergenic 45.0%
CCAGCTTCTCAAGCAAAGTT+GGG + chr7.2:69030538-69030557 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69029921-69029940 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69029918-69029937 MS.gene060059:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69029619-69029638 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69029608-69029627 None:intergenic 45.0%
GCATCTGATGCAGTCAGTAT+GGG - chr7.2:69030815-69030834 MS.gene060059:CDS 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69030845-69030864 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69029697-69029716 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69030695-69030714 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG + chr7.2:69029664-69029683 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69030659-69030678 MS.gene060059:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69030215-69030234 MS.gene060059:CDS 45.0%
! CATACTGACTGCATCAGATG+CGG + chr7.2:69030816-69030835 None:intergenic 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69030303-69030322 MS.gene060059:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69030455-69030474 MS.gene060059:CDS 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69029836-69029855 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69029878-69029897 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69030247-69030266 MS.gene060059:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69029841-69029860 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69030927-69030946 MS.gene060059:CDS 50.0%
CCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69030535-69030554 MS.gene060059:CDS 50.0%
CGCATCTGATGCAGTCAGTA+TGG - chr7.2:69030814-69030833 MS.gene060059:CDS 50.0%
CGTTGCTATGGTTGTTTGCG+AGG + chr7.2:69029665-69029684 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69029524-69029543 MS.gene060059:CDS 50.0%
GCAGAGAACAACTTTGGCGA+TGG + chr7.2:69029505-69029524 None:intergenic 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69030539-69030558 None:intergenic 50.0%
GCCCATCTTGTGCATTTGGA+AGG + chr7.2:69030514-69030533 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG - chr7.2:69030556-69030575 MS.gene060059:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69030264-69030283 MS.gene060059:intron 50.0%
GTGCTAAGCATCATCGCTTC+TGG - chr7.2:69029771-69029790 MS.gene060059:CDS 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69029677-69029696 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG + chr7.2:69029650-69029669 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69029929-69029948 MS.gene060059:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69029871-69029890 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69029833-69029852 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69029847-69029866 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69029850-69029869 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69030260-69030279 None:intergenic 55.0%
ACTGACTGCATCAGATGCGG+TGG + chr7.2:69030813-69030832 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69030926-69030945 MS.gene060059:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG + chr7.2:69029661-69029680 None:intergenic 55.0%
GGGAGCCCATCTTGTGCATT+TGG + chr7.2:69030518-69030537 None:intergenic 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69030664-69030683 MS.gene060059:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69029799-69029818 None:intergenic 55.0%
!! ATCATCGCTTCTGGCTCCGA+GGG - chr7.2:69029780-69029799 MS.gene060059:CDS 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69029910-69029929 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG + chr7.2:69029647-69029666 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69029891-69029910 MS.gene060059:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69029865-69029884 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69030798-69030817 None:intergenic 60.0%
!! CATCATCGCTTCTGGCTCCG+AGG - chr7.2:69029779-69029798 MS.gene060059:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69029895-69029914 MS.gene060059:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69029894-69029913 MS.gene060059:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69029909-69029928 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69029477 69030952 69029477 ID=MS.gene060059
chr7.2 mRNA 69029477 69030952 69029477 ID=MS.gene060059.t1;Parent=MS.gene060059
chr7.2 exon 69030389 69030952 69030389 ID=MS.gene060059.t1.exon1;Parent=MS.gene060059.t1
chr7.2 CDS 69030389 69030952 69030389 ID=cds.MS.gene060059.t1;Parent=MS.gene060059.t1
chr7.2 exon 69029477 69030244 69029477 ID=MS.gene060059.t1.exon2;Parent=MS.gene060059.t1
chr7.2 CDS 69029477 69030244 69029477 ID=cds.MS.gene060059.t1;Parent=MS.gene060059.t1
Gene Sequence

>MS.gene060059

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAAGTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTTCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATCAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATAATAATTTTGATGCTTCGGATACAAATGCCTATGATTTTCGCCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCACAAGATGGGCTCCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCAGTATGGGTTTTCCAACTCGACTAGACTTTGTAGCGGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGGAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene060059.t1

MRFSRKTIAIAKVVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIASGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNNNFDASDTNAYDFRLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAQDGLPTLLEKLASESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVSMGFPTRLDFVADHPFLFMIREELTGTIIFVGQVLNPLAG