Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060536.t1 | XP_013444598.1 | 86.5 | 386 | 52 | 0 | 1 | 386 | 12 | 397 | 1.40E-184 | 655.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060536.t1 | Q9S7T8 | 53.6 | 386 | 172 | 4 | 6 | 384 | 5 | 390 | 1.3e-112 | 407.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060536.t1 | A0A072TP44 | 86.5 | 386 | 52 | 0 | 1 | 386 | 12 | 397 | 1.0e-184 | 655.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060536 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene060536 | PPI |
| MS.gene006610 | MS.gene060536 | PPI |
| MS.gene031697 | MS.gene060536 | PPI |
| MS.gene060536 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060536.t1 | MTR_8g027395 | 86.528 | 386 | 52 | 0 | 1 | 386 | 12 | 397 | 0.0 | 677 |
| MS.gene060536.t1 | MTR_8g027420 | 84.974 | 386 | 47 | 1 | 1 | 386 | 1 | 375 | 0.0 | 647 |
| MS.gene060536.t1 | MTR_4g088535 | 72.703 | 381 | 88 | 2 | 5 | 385 | 6 | 370 | 0.0 | 541 |
| MS.gene060536.t1 | MTR_4g088525 | 74.515 | 361 | 92 | 0 | 25 | 385 | 8 | 368 | 0.0 | 541 |
| MS.gene060536.t1 | MTR_3g018740 | 70.833 | 384 | 109 | 2 | 4 | 384 | 3 | 386 | 0.0 | 514 |
| MS.gene060536.t1 | MTR_4g045707 | 67.526 | 388 | 124 | 2 | 1 | 386 | 1 | 388 | 1.45e-180 | 507 |
| MS.gene060536.t1 | MTR_3g101010 | 68.475 | 387 | 118 | 1 | 4 | 386 | 3 | 389 | 3.87e-179 | 503 |
| MS.gene060536.t1 | MTR_2g045980 | 65.116 | 387 | 126 | 4 | 4 | 384 | 3 | 386 | 1.11e-169 | 479 |
| MS.gene060536.t1 | MTR_2g046030 | 64.083 | 387 | 130 | 4 | 4 | 384 | 3 | 386 | 4.78e-168 | 475 |
| MS.gene060536.t1 | MTR_3g101180 | 63.198 | 394 | 131 | 4 | 6 | 385 | 6 | 399 | 2.48e-163 | 464 |
| MS.gene060536.t1 | MTR_8g461160 | 62.791 | 387 | 136 | 2 | 6 | 384 | 6 | 392 | 1.07e-162 | 462 |
| MS.gene060536.t1 | MTR_3g048000 | 63.061 | 379 | 121 | 3 | 9 | 385 | 30 | 391 | 3.62e-162 | 460 |
| MS.gene060536.t1 | MTR_3g101030 | 60.697 | 402 | 134 | 5 | 7 | 386 | 30 | 429 | 1.31e-160 | 458 |
| MS.gene060536.t1 | MTR_3g101130 | 61.069 | 393 | 142 | 4 | 1 | 386 | 1 | 389 | 6.95e-158 | 449 |
| MS.gene060536.t1 | MTR_7g050810 | 59.847 | 391 | 149 | 2 | 4 | 386 | 14 | 404 | 1.09e-156 | 447 |
| MS.gene060536.t1 | MTR_7g047780 | 59.079 | 391 | 152 | 2 | 4 | 386 | 12 | 402 | 1.90e-154 | 441 |
| MS.gene060536.t1 | MTR_7g451890 | 58.312 | 391 | 155 | 2 | 4 | 386 | 12 | 402 | 4.32e-154 | 440 |
| MS.gene060536.t1 | MTR_7g050750 | 58.312 | 391 | 155 | 2 | 4 | 386 | 6 | 396 | 7.30e-154 | 439 |
| MS.gene060536.t1 | MTR_3g101050 | 59.326 | 386 | 128 | 5 | 8 | 384 | 31 | 396 | 2.44e-143 | 413 |
| MS.gene060536.t1 | MTR_3g015620 | 59.173 | 387 | 126 | 5 | 6 | 384 | 16 | 378 | 2.27e-139 | 402 |
| MS.gene060536.t1 | MTR_3g102920 | 56.430 | 381 | 122 | 6 | 13 | 385 | 65 | 409 | 1.42e-130 | 381 |
| MS.gene060536.t1 | MTR_3g101200 | 53.964 | 391 | 149 | 5 | 1 | 385 | 26 | 391 | 1.72e-124 | 365 |
| MS.gene060536.t1 | MTR_3g101190 | 54.875 | 359 | 103 | 2 | 28 | 386 | 13 | 312 | 1.81e-121 | 354 |
| MS.gene060536.t1 | MTR_3g100995 | 64.844 | 256 | 85 | 3 | 134 | 386 | 11 | 264 | 9.67e-111 | 325 |
| MS.gene060536.t1 | MTR_3g018747 | 66.409 | 259 | 69 | 3 | 130 | 384 | 9 | 253 | 1.72e-110 | 324 |
| MS.gene060536.t1 | MTR_3g100010 | 57.097 | 310 | 85 | 4 | 31 | 307 | 42 | 336 | 8.04e-110 | 325 |
| MS.gene060536.t1 | MTR_7g050830 | 51.735 | 317 | 120 | 3 | 4 | 298 | 14 | 319 | 4.24e-101 | 303 |
| MS.gene060536.t1 | MTR_3g114310 | 43.734 | 391 | 201 | 10 | 11 | 386 | 24 | 410 | 6.07e-93 | 285 |
| MS.gene060536.t1 | MTR_3g015760 | 60.153 | 261 | 94 | 5 | 130 | 384 | 23 | 279 | 1.06e-92 | 280 |
| MS.gene060536.t1 | MTR_3g100520 | 63.303 | 218 | 69 | 4 | 171 | 386 | 1 | 209 | 1.51e-85 | 259 |
| MS.gene060536.t1 | MTR_3g111160 | 63.182 | 220 | 77 | 3 | 171 | 386 | 1 | 220 | 1.42e-84 | 256 |
| MS.gene060536.t1 | MTR_3g101110 | 57.741 | 239 | 67 | 4 | 130 | 360 | 68 | 280 | 5.48e-81 | 249 |
| MS.gene060536.t1 | MTR_3g099970 | 62.376 | 202 | 59 | 2 | 124 | 325 | 14 | 198 | 1.20e-79 | 243 |
| MS.gene060536.t1 | MTR_2g046410 | 62.212 | 217 | 71 | 4 | 175 | 384 | 135 | 347 | 2.11e-78 | 245 |
| MS.gene060536.t1 | MTR_3g111150 | 61.850 | 173 | 42 | 2 | 9 | 181 | 2 | 150 | 5.32e-65 | 204 |
| MS.gene060536.t1 | MTR_3g102870 | 62.893 | 159 | 59 | 0 | 195 | 353 | 3 | 161 | 7.91e-64 | 202 |
| MS.gene060536.t1 | MTR_3g101020 | 54.301 | 186 | 56 | 3 | 204 | 386 | 1 | 160 | 4.38e-57 | 184 |
| MS.gene060536.t1 | MTR_3g101150 | 61.392 | 158 | 53 | 1 | 236 | 385 | 1 | 158 | 1.27e-56 | 182 |
| MS.gene060536.t1 | MTR_3g100990 | 64.000 | 150 | 53 | 1 | 6 | 155 | 5 | 153 | 8.58e-54 | 186 |
| MS.gene060536.t1 | MTR_4g093550 | 65.169 | 89 | 31 | 0 | 1 | 89 | 1 | 89 | 3.63e-31 | 114 |
| MS.gene060536.t1 | MTR_6g046890 | 56.977 | 86 | 32 | 1 | 14 | 94 | 7 | 92 | 2.89e-20 | 86.7 |
| MS.gene060536.t1 | MTR_3g101140 | 57.971 | 69 | 24 | 2 | 323 | 386 | 48 | 116 | 8.80e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060536.t1 | AT1G47710 | 53.627 | 386 | 172 | 4 | 6 | 384 | 5 | 390 | 2.53e-144 | 415 |
| MS.gene060536.t1 | AT1G47710 | 53.627 | 386 | 172 | 4 | 6 | 384 | 32 | 417 | 2.37e-143 | 414 |
| MS.gene060536.t1 | AT2G25240 | 47.927 | 386 | 189 | 7 | 4 | 383 | 3 | 382 | 2.68e-117 | 346 |
| MS.gene060536.t1 | AT3G45220 | 45.641 | 390 | 200 | 4 | 4 | 383 | 3 | 390 | 5.09e-117 | 346 |
| MS.gene060536.t1 | AT2G26390 | 46.410 | 390 | 193 | 7 | 4 | 383 | 3 | 386 | 1.77e-112 | 334 |
| MS.gene060536.t1 | AT1G64030 | 42.268 | 388 | 193 | 5 | 6 | 383 | 5 | 371 | 6.28e-98 | 296 |
| MS.gene060536.t1 | AT2G14540 | 43.702 | 389 | 188 | 7 | 4 | 383 | 31 | 397 | 4.41e-93 | 285 |
| MS.gene060536.t1 | AT1G62170 | 41.530 | 366 | 181 | 5 | 28 | 383 | 89 | 431 | 9.54e-92 | 282 |
| MS.gene060536.t1 | AT1G62170 | 38.095 | 399 | 181 | 6 | 28 | 383 | 89 | 464 | 5.97e-85 | 266 |
| MS.gene060536.t1 | AT2G35580 | 40.561 | 392 | 198 | 9 | 4 | 383 | 3 | 371 | 8.17e-85 | 263 |
| MS.gene060536.t1 | AT1G64010 | 43.981 | 216 | 97 | 4 | 171 | 383 | 1 | 195 | 7.56e-58 | 187 |
| MS.gene060536.t1 | AT1G64010 | 43.781 | 201 | 89 | 4 | 186 | 383 | 2 | 181 | 5.74e-52 | 172 |
| MS.gene060536.t1 | AT1G63280 | 51.695 | 118 | 53 | 2 | 127 | 242 | 5 | 120 | 1.40e-32 | 119 |
| MS.gene060536.t1 | AT1G62160 | 36.932 | 176 | 90 | 3 | 210 | 383 | 62 | 218 | 8.03e-32 | 120 |
| MS.gene060536.t1 | AT1G51330 | 51.786 | 112 | 51 | 3 | 128 | 236 | 29 | 140 | 6.79e-25 | 100 |
| MS.gene060536.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 11 | 120 | 10 | 120 | 3.30e-12 | 63.5 |
| MS.gene060536.t1 | AT2G35555 | 37.500 | 104 | 43 | 2 | 250 | 351 | 1 | 84 | 9.84e-11 | 59.3 |
Find 88 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.1:+74986661 | MS.gene060536:CDS |
| GTGAGTTTACCTTTCTCTTA+TGG | 0.244734 | 8.1:+74987149 | MS.gene060536:CDS |
| GGAGTAATCCATTTCCTAAT+TGG | 0.264163 | 8.1:+74986790 | MS.gene060536:CDS |
| TATTTGCTTGTCCTCCAATT+AGG | 0.267781 | 8.1:-74986804 | None:intergenic |
| CACTTGTTTGCAAGGAAGCT+TGG | 0.273276 | 8.1:-74987048 | None:intergenic |
| TCAAGGTTGCTGCTCATAAA+AGG | 0.308829 | 8.1:-74986864 | None:intergenic |
| AACCGTGTCTACCGATTATA+AGG | 0.324936 | 8.1:+74985497 | MS.gene060536:CDS |
| AATCTTCTCTAATTAGAAAT+AGG | 0.325707 | 8.1:-74987346 | None:intergenic |
| GCTACAGCCAATGCTGGAAT+AGG | 0.327490 | 8.1:+74987275 | MS.gene060536:CDS |
| CCAGATGAAAATTTGAATCT+TGG | 0.348384 | 8.1:-74987092 | None:intergenic |
| CAGGTTCTCAATCCTCTTGT+TGG | 0.356093 | 8.1:+74987395 | MS.gene060536:CDS |
| ACTTGTTTGCAAGGAAGCTT+GGG | 0.364283 | 8.1:-74987047 | None:intergenic |
| CTTGTCCTCCAATTAGGAAA+TGG | 0.370502 | 8.1:-74986798 | None:intergenic |
| CTACAGCCAATGCTGGAATA+GGG | 0.378345 | 8.1:+74987276 | MS.gene060536:CDS |
| CATCAAAAGCACTAATAAAC+TGG | 0.379690 | 8.1:-74986887 | None:intergenic |
| AGGTTCTCAATCCTCTTGTT+GGG | 0.390454 | 8.1:+74987396 | MS.gene060536:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.390951 | 8.1:+74986975 | MS.gene060536:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 8.1:-74985470 | None:intergenic |
| GTCCGGCAAAGATGATCGTT+TGG | 0.407941 | 8.1:-74987373 | None:intergenic |
| CGGAAGAAGCTGCGTCTTTG+AGG | 0.413427 | 8.1:-74985401 | None:intergenic |
| ACCCAAACGATCATCTTTGC+CGG | 0.414042 | 8.1:+74987371 | MS.gene060536:CDS |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.1:+74987125 | MS.gene060536:CDS |
| TGCAAGGAAGCTTGGGCTCT+AGG | 0.444888 | 8.1:-74987040 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 8.1:-74985469 | None:intergenic |
| CAATGATGCTGAGGACAACT+TGG | 0.452304 | 8.1:-74985275 | None:intergenic |
| AACGATCATCTTTGCCGGAC+AGG | 0.453881 | 8.1:+74987376 | MS.gene060536:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.1:+74986662 | MS.gene060536:CDS |
| ATCATTGCTGCTGGCTCTGA+CGG | 0.455190 | 8.1:+74985291 | MS.gene060536:CDS |
| GTCCTCAGCATCATTGCTGC+TGG | 0.456068 | 8.1:+74985282 | MS.gene060536:CDS |
| AGAAGACTTGTGAAATATGT+TGG | 0.458817 | 8.1:-74987222 | None:intergenic |
| TCCGGCAAAGATGATCGTTT+GGG | 0.463042 | 8.1:-74987372 | None:intergenic |
| GGGGCCATGTGTGTGCCAAC+TGG | 0.466848 | 8.1:+74987296 | MS.gene060536:CDS |
| GGTAGACACGGTTTCTTTGA+AGG | 0.469655 | 8.1:-74985487 | None:intergenic |
| GTCAAACCTCCATAAGAGAA+AGG | 0.475976 | 8.1:-74987158 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.1:+74986709 | MS.gene060536:CDS |
| TGTTGGAAACAGAAAGGTCT+TGG | 0.481617 | 8.1:-74987205 | None:intergenic |
| CTTCGTCTTCCTTATAAACA+AGG | 0.483822 | 8.1:+74986921 | MS.gene060536:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.484571 | 8.1:+74987182 | MS.gene060536:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.1:+74986708 | MS.gene060536:CDS |
| AGCGGGAGTAGCCTTATAAT+CGG | 0.491481 | 8.1:-74985508 | None:intergenic |
| TTTATGAAATCAACAAAAGC+GGG | 0.491558 | 8.1:-74985525 | None:intergenic |
| GAAGCTGCTACAGCCAATGC+TGG | 0.496627 | 8.1:+74987269 | MS.gene060536:CDS |
| GAAAAGACGATGTTGTTGTC+TGG | 0.511591 | 8.1:-74985240 | None:intergenic |
| TTTCTCCACCCACACACCAT+TGG | 0.515807 | 8.1:-74985445 | None:intergenic |
| CGTCTTTGAGGAGGACAGAA+AGG | 0.521608 | 8.1:-74985389 | None:intergenic |
| TAGAAATAGGAAAGGGTGAT+CGG | 0.524118 | 8.1:-74987333 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.1:-74985206 | None:intergenic |
| AGTTTACCTTTCTCTTATGG+AGG | 0.524648 | 8.1:+74987152 | MS.gene060536:CDS |
| GGTTGGTGCTTGATTCATCA+AGG | 0.525769 | 8.1:-74985170 | None:intergenic |
| CTCTAATTAGAAATAGGAAA+GGG | 0.528170 | 8.1:-74987340 | None:intergenic |
| GTAATCCATTTCCTAATTGG+AGG | 0.529962 | 8.1:+74986793 | MS.gene060536:CDS |
| CCTACTCTCACTTGTTTGCA+AGG | 0.531852 | 8.1:-74987056 | None:intergenic |
| GATGATCGATGGATTTGAAA+CGG | 0.537183 | 8.1:-74985344 | None:intergenic |
| ACTATCAGCTATGGTTAAGA+AGG | 0.542661 | 8.1:+74986998 | MS.gene060536:CDS |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.1:-74985187 | None:intergenic |
| AAGAGGATTGAGAACCTGTC+CGG | 0.545651 | 8.1:-74987390 | None:intergenic |
| AAAAGAGAGGCGAGGACCAT+CGG | 0.546211 | 8.1:-74985421 | None:intergenic |
| GACACGGTTTCTTTGAAGGA+AGG | 0.549001 | 8.1:-74985483 | None:intergenic |
| GCTATAAAGTCTATTCCAGT+TGG | 0.552837 | 8.1:-74987311 | None:intergenic |
| CATGGCCCCTATTCCAGCAT+TGG | 0.553337 | 8.1:-74987282 | None:intergenic |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.1:+74987118 | MS.gene060536:CDS |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.1:-74985205 | None:intergenic |
| AAAGGAGTTGAGATGATCGA+TGG | 0.575570 | 8.1:-74985355 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.1:-74987211 | None:intergenic |
| AAGCACTAATAAACTGGTCA+AGG | 0.577273 | 8.1:-74986881 | None:intergenic |
| TACAGCCAATGCTGGAATAG+GGG | 0.578083 | 8.1:+74987277 | MS.gene060536:CDS |
| AGAAAGGAGATGAGAGACAA+AGG | 0.579717 | 8.1:-74985373 | None:intergenic |
| TCTCTAATTAGAAATAGGAA+AGG | 0.590645 | 8.1:-74987341 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.1:-74985191 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594137 | 8.1:+74986989 | MS.gene060536:CDS |
| AAAGACGCAGCTTCTTCCGA+TGG | 0.595754 | 8.1:+74985405 | MS.gene060536:CDS |
| AGTTAAGATCACCCAACAAG+AGG | 0.599430 | 8.1:-74987407 | None:intergenic |
| ATCAGCTATGGTTAAGAAGG+TGG | 0.601632 | 8.1:+74987001 | MS.gene060536:CDS |
| TGACTGAGCTGCGATTCAGA+AGG | 0.606848 | 8.1:-74986836 | None:intergenic |
| GTTTATGAAATCAACAAAAG+CGG | 0.606943 | 8.1:-74985526 | None:intergenic |
| TCTATAGAAGTAAACGAGGA+AGG | 0.611113 | 8.1:+74987242 | MS.gene060536:CDS |
| AGCCAGCAGCAATGATGCTG+AGG | 0.612609 | 8.1:-74985284 | None:intergenic |
| CCTTGCAAACAAGTGAGAGT+AGG | 0.616089 | 8.1:+74987056 | MS.gene060536:CDS |
| AAGAAGCTGCGTCTTTGAGG+AGG | 0.630926 | 8.1:-74985398 | None:intergenic |
| AGGACAACTTGGAGAGACAA+TGG | 0.633307 | 8.1:-74985264 | None:intergenic |
| TATTCCAGTTGGCACACACA+TGG | 0.635717 | 8.1:-74987300 | None:intergenic |
| ACACACCATTGGCAAAAGAG+AGG | 0.646815 | 8.1:-74985434 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.1:-74985211 | None:intergenic |
| AGCCTTATAATCGGTAGACA+CGG | 0.668970 | 8.1:-74985499 | None:intergenic |
| GATCGATGGATTTGAAACGG+AGG | 0.709969 | 8.1:-74985341 | None:intergenic |
| GTCTTCTATAGAAGTAAACG+AGG | 0.713462 | 8.1:+74987238 | MS.gene060536:CDS |
| AAGCTGTCAACTGACCCTTG+AGG | 0.752414 | 8.1:-74986723 | None:intergenic |
| CCATTGGCAAAAGAGAGGCG+AGG | 0.766373 | 8.1:-74985429 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTGATATTGTATTTA+AGG | + | chr8.1:74986629-74986648 | MS.gene060536:intron | 10.0% |
| !! | TATTATTTATATTCTTTGAA+TGG | - | chr8.1:74986463-74986482 | None:intergenic | 10.0% |
| !! | ACATAATATTCCTTAAATTT+GGG | - | chr8.1:74985771-74985790 | None:intergenic | 15.0% |
| !! | TACATAATATTCCTTAAATT+TGG | - | chr8.1:74985772-74985791 | None:intergenic | 15.0% |
| !! | TATTATCTCATATTATCTAT+TGG | - | chr8.1:74986061-74986080 | None:intergenic | 15.0% |
| !!! | TTGTGTTATTGATTAATTAA+TGG | + | chr8.1:74985608-74985627 | MS.gene060536:intron | 15.0% |
| !! | AATCTTCTCTAATTAGAAAT+AGG | - | chr8.1:74987349-74987368 | None:intergenic | 20.0% |
| !! | AATTTAACGGTGATTATATT+TGG | + | chr8.1:74985896-74985915 | MS.gene060536:intron | 20.0% |
| !! | ACTGAGATAAACAAATTTAA+CGG | + | chr8.1:74985883-74985902 | MS.gene060536:intron | 20.0% |
| !!! | AATGTTGATTTATGCTTAAT+TGG | + | chr8.1:74986133-74986152 | MS.gene060536:intron | 20.0% |
| !!! | ACTATTCAATCTTATTTAGA+AGG | - | chr8.1:74985742-74985761 | None:intergenic | 20.0% |
| !!! | CTATTCAATCTTATTTAGAA+GGG | - | chr8.1:74985741-74985760 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | - | chr8.1:74986933-74986952 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATTTCATAAACA+AGG | + | chr8.1:74985530-74985549 | MS.gene060536:CDS | 20.0% |
| ! | AAAGATTATCTATGCTTCAA+AGG | - | chr8.1:74985675-74985694 | None:intergenic | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.1:74986708-74986727 | MS.gene060536:CDS | 25.0% |
| ! | CTCTAATTAGAAATAGGAAA+GGG | - | chr8.1:74987343-74987362 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.1:74986662-74986681 | MS.gene060536:CDS | 25.0% |
| ! | GTTTATGAAATCAACAAAAG+CGG | - | chr8.1:74985529-74985548 | None:intergenic | 25.0% |
| ! | TACAACTATTTGAATGATTC+TGG | + | chr8.1:74986397-74986416 | MS.gene060536:intron | 25.0% |
| ! | TAGTGTATATCCCAAATTTA+AGG | + | chr8.1:74985758-74985777 | MS.gene060536:intron | 25.0% |
| ! | TCTCTAATTAGAAATAGGAA+AGG | - | chr8.1:74987344-74987363 | None:intergenic | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.1:74986661-74986680 | MS.gene060536:CDS | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.1:74986709-74986728 | MS.gene060536:CDS | 25.0% |
| ! | TTTATGAAATCAACAAAAGC+GGG | - | chr8.1:74985528-74985547 | None:intergenic | 25.0% |
| !! | CAAGATTCAAATTTTCATCT+GGG | + | chr8.1:74987093-74987112 | MS.gene060536:CDS | 25.0% |
| !! | TTAATACCCTTGTCTATTTT+AGG | + | chr8.1:74986366-74986385 | MS.gene060536:intron | 25.0% |
| !!! | GTTTTAGCCTTTAATTCTTT+TGG | - | chr8.1:74986282-74986301 | None:intergenic | 25.0% |
| AAATGCTAAATCCCATACAA+AGG | - | chr8.1:74986247-74986266 | None:intergenic | 30.0% | |
| AACCGCAATATGTGAAAATT+AGG | + | chr8.1:74986532-74986551 | MS.gene060536:intron | 30.0% | |
| AATGCTAAATCCCATACAAA+GGG | - | chr8.1:74986246-74986265 | None:intergenic | 30.0% | |
| ACAAATTAAAAAGCAGAGCA+TGG | - | chr8.1:74985592-74985611 | None:intergenic | 30.0% | |
| ACTTCAAAATCCTACTCAAA+TGG | - | chr8.1:74986308-74986327 | None:intergenic | 30.0% | |
| AGAAGACTTGTGAAATATGT+TGG | - | chr8.1:74987225-74987244 | None:intergenic | 30.0% | |
| ATGAGAAGTTGAATTGATGT+TGG | - | chr8.1:74985936-74985955 | None:intergenic | 30.0% | |
| CCAGATGAAAATTTGAATCT+TGG | - | chr8.1:74987095-74987114 | None:intergenic | 30.0% | |
| CTAAAGCCTAAAATAGACAA+GGG | - | chr8.1:74986375-74986394 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.1:74987214-74987233 | None:intergenic | 30.0% | |
| TGAGAAGTTGAATTGATGTT+GGG | - | chr8.1:74985935-74985954 | None:intergenic | 30.0% | |
| TGATTTATGCTTAATTGGCT+AGG | + | chr8.1:74986138-74986157 | MS.gene060536:intron | 30.0% | |
| TGCTTCTCCAAAAGAATTAA+AGG | + | chr8.1:74986272-74986291 | MS.gene060536:intron | 30.0% | |
| TTATGGAGGTTTGACAAAAA+TGG | + | chr8.1:74987166-74987185 | MS.gene060536:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr8.1:74986975-74986994 | MS.gene060536:CDS | 30.0% | |
| ! | AGCCTAATTTTCACATATTG+CGG | - | chr8.1:74986537-74986556 | None:intergenic | 30.0% |
| ! | CAATCTTATTTAGAAGGGAA+AGG | - | chr8.1:74985736-74985755 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGTGCTTTTGA+TGG | + | chr8.1:74986888-74986907 | MS.gene060536:CDS | 30.0% |
| ! | CCAAGATTCAAATTTTCATC+TGG | + | chr8.1:74987092-74987111 | MS.gene060536:CDS | 30.0% |
| ! | GAAATTTGTTCCCTTTGTAT+GGG | + | chr8.1:74986233-74986252 | MS.gene060536:intron | 30.0% |
| !! | CATCAAAAGCACTAATAAAC+TGG | - | chr8.1:74986890-74986909 | None:intergenic | 30.0% |
| !! | GCTAATGCACTGTATTTTAA+AGG | + | chr8.1:74986762-74986781 | MS.gene060536:CDS | 30.0% |
| !! | TATTGCGGTTCTAAATTAGT+TGG | - | chr8.1:74986522-74986541 | None:intergenic | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.1:74985220-74985239 | None:intergenic | 30.0% |
| AAGCACTAATAAACTGGTCA+AGG | - | chr8.1:74986884-74986903 | None:intergenic | 35.0% | |
| AAGTTGAATTGATGTTGGGA+AGG | - | chr8.1:74985931-74985950 | None:intergenic | 35.0% | |
| ACAGCTCTGTTTATCTAGAA+GGG | + | chr8.1:74986329-74986348 | MS.gene060536:intron | 35.0% | |
| ACTATCAGCTATGGTTAAGA+AGG | + | chr8.1:74986998-74987017 | MS.gene060536:CDS | 35.0% | |
| AGTGTAAGTATTATCACCGT+CGG | - | chr8.1:74986203-74986222 | None:intergenic | 35.0% | |
| AGTTTACCTTTCTCTTATGG+AGG | + | chr8.1:74987152-74987171 | MS.gene060536:CDS | 35.0% | |
| CATATCTTTCACAACTCTCA+AGG | + | chr8.1:74985999-74986018 | MS.gene060536:intron | 35.0% | |
| CTAAAACTAGCCATTTGAGT+AGG | + | chr8.1:74986295-74986314 | MS.gene060536:intron | 35.0% | |
| CTTCGTCTTCCTTATAAACA+AGG | + | chr8.1:74986921-74986940 | MS.gene060536:CDS | 35.0% | |
| GCTAAAGCCTAAAATAGACA+AGG | - | chr8.1:74986376-74986395 | None:intergenic | 35.0% | |
| GCTATAAAGTCTATTCCAGT+TGG | - | chr8.1:74987314-74987333 | None:intergenic | 35.0% | |
| GGAGTAATCCATTTCCTAAT+TGG | + | chr8.1:74986790-74986809 | MS.gene060536:CDS | 35.0% | |
| GTAATCCATTTCCTAATTGG+AGG | + | chr8.1:74986793-74986812 | MS.gene060536:CDS | 35.0% | |
| GTACACCACACAAATATTCA+GGG | + | chr8.1:74985789-74985808 | MS.gene060536:intron | 35.0% | |
| GTCTTCTATAGAAGTAAACG+AGG | + | chr8.1:74987238-74987257 | MS.gene060536:CDS | 35.0% | |
| GTGAGTTTACCTTTCTCTTA+TGG | + | chr8.1:74987149-74987168 | MS.gene060536:CDS | 35.0% | |
| TACAGCTCTGTTTATCTAGA+AGG | + | chr8.1:74986328-74986347 | MS.gene060536:intron | 35.0% | |
| TAGAAATAGGAAAGGGTGAT+CGG | - | chr8.1:74987336-74987355 | None:intergenic | 35.0% | |
| TATTTGCTTGTCCTCCAATT+AGG | - | chr8.1:74986807-74986826 | None:intergenic | 35.0% | |
| TCTATAGAAGTAAACGAGGA+AGG | + | chr8.1:74987242-74987261 | MS.gene060536:CDS | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.1:74987118-74987137 | MS.gene060536:CDS | 35.0% | |
| TGTACACCACACAAATATTC+AGG | + | chr8.1:74985788-74985807 | MS.gene060536:intron | 35.0% | |
| ! | CATGGATTGCAATGAAAAGA+GGG | - | chr8.1:74985574-74985593 | None:intergenic | 35.0% |
| ! | CGAAATTTGTTCCCTTTGTA+TGG | + | chr8.1:74986232-74986251 | MS.gene060536:intron | 35.0% |
| ! | GATAGTCCATCTTTTGCATT+TGG | - | chr8.1:74986984-74987003 | None:intergenic | 35.0% |
| ! | GATGATCGATGGATTTGAAA+CGG | - | chr8.1:74985347-74985366 | None:intergenic | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.1:74986989-74987008 | MS.gene060536:CDS | 35.0% |
| !! | CACTGTATTTTAAAGGAGCA+TGG | + | chr8.1:74986769-74986788 | MS.gene060536:CDS | 35.0% |
| !!! | ATGTTTTTTTGAGGCGATTC+AGG | + | chr8.1:74985815-74985834 | MS.gene060536:intron | 35.0% |
| !!! | TGTTTTTTTGAGGCGATTCA+GGG | + | chr8.1:74985816-74985835 | MS.gene060536:intron | 35.0% |
| AAAGGAGTTGAGATGATCGA+TGG | - | chr8.1:74985358-74985377 | None:intergenic | 40.0% | |
| ACTTGTTTGCAAGGAAGCTT+GGG | - | chr8.1:74987050-74987069 | None:intergenic | 40.0% | |
| AGAAAGGAGATGAGAGACAA+AGG | - | chr8.1:74985376-74985395 | None:intergenic | 40.0% | |
| AGGTTCTCAATCCTCTTGTT+GGG | + | chr8.1:74987396-74987415 | MS.gene060536:CDS | 40.0% | |
| ATCAGCCCTGAATATTTGTG+TGG | - | chr8.1:74985797-74985816 | None:intergenic | 40.0% | |
| ATCAGCTATGGTTAAGAAGG+TGG | + | chr8.1:74987001-74987020 | MS.gene060536:CDS | 40.0% | |
| ATGGTCAAACTGAGTCTTAC+TGG | + | chr8.1:74986165-74986184 | MS.gene060536:intron | 40.0% | |
| CTTGTCCTCCAATTAGGAAA+TGG | - | chr8.1:74986801-74986820 | None:intergenic | 40.0% | |
| GAAAAGACGATGTTGTTGTC+TGG | - | chr8.1:74985243-74985262 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr8.1:74985472-74985491 | None:intergenic | 40.0% | |
| GAATTGATGTTGGGAAGGTA+GGG | - | chr8.1:74985926-74985945 | None:intergenic | 40.0% | |
| GTCAAACCTCCATAAGAGAA+AGG | - | chr8.1:74987161-74987180 | None:intergenic | 40.0% | |
| GTTGGACGCAATAAAACAAG+AGG | - | chr8.1:74986504-74986523 | None:intergenic | 40.0% | |
| TCAAGGTTGCTGCTCATAAA+AGG | - | chr8.1:74986867-74986886 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.1:74987125-74987144 | MS.gene060536:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr8.1:74985473-74985492 | None:intergenic | 40.0% | |
| TGAATTGATGTTGGGAAGGT+AGG | - | chr8.1:74985927-74985946 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.1:74987169-74987188 | MS.gene060536:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.1:74986681-74986700 | MS.gene060536:CDS | 40.0% | |
| TGTTGGAAACAGAAAGGTCT+TGG | - | chr8.1:74987208-74987227 | None:intergenic | 40.0% | |
| TTATGCTTAATTGGCTAGGC+TGG | + | chr8.1:74986142-74986161 | MS.gene060536:intron | 40.0% | |
| ! | AACCGTGTCTACCGATTATA+AGG | + | chr8.1:74985497-74985516 | MS.gene060536:CDS | 40.0% |
| ! | AGCCTTATAATCGGTAGACA+CGG | - | chr8.1:74985502-74985521 | None:intergenic | 40.0% |
| ! | GCATGGATTGCAATGAAAAG+AGG | - | chr8.1:74985575-74985594 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.1:74987182-74987201 | MS.gene060536:CDS | 40.0% |
| !! | AACTGAGTCTTACTGGTTCA+AGG | + | chr8.1:74986172-74986191 | MS.gene060536:intron | 40.0% |
| !!! | GTTTTTTTGAGGCGATTCAG+GGG | + | chr8.1:74985817-74985836 | MS.gene060536:intron | 40.0% |
| !!! | TCAGGGCTGATGTTTTTTTG+AGG | + | chr8.1:74985806-74985825 | MS.gene060536:intron | 40.0% |
| AAGAGGATTGAGAACCTGTC+CGG | - | chr8.1:74987393-74987412 | None:intergenic | 45.0% | |
| ACACACCATTGGCAAAAGAG+AGG | - | chr8.1:74985437-74985456 | None:intergenic | 45.0% | |
| ACCCAAACGATCATCTTTGC+CGG | + | chr8.1:74987371-74987390 | MS.gene060536:CDS | 45.0% | |
| AGGACAACTTGGAGAGACAA+TGG | - | chr8.1:74985267-74985286 | None:intergenic | 45.0% | |
| CAATGATGCTGAGGACAACT+TGG | - | chr8.1:74985278-74985297 | None:intergenic | 45.0% | |
| CACAACTCTCAAGGTGTAGA+TGG | + | chr8.1:74986008-74986027 | MS.gene060536:intron | 45.0% | |
| CACTTGTTTGCAAGGAAGCT+TGG | - | chr8.1:74987051-74987070 | None:intergenic | 45.0% | |
| CAGGTTCTCAATCCTCTTGT+TGG | + | chr8.1:74987395-74987414 | MS.gene060536:CDS | 45.0% | |
| CCTACTCTCACTTGTTTGCA+AGG | - | chr8.1:74987059-74987078 | None:intergenic | 45.0% | |
| CCTTGCAAACAAGTGAGAGT+AGG | + | chr8.1:74987056-74987075 | MS.gene060536:CDS | 45.0% | |
| CTACAGCCAATGCTGGAATA+GGG | + | chr8.1:74987276-74987295 | MS.gene060536:CDS | 45.0% | |
| GGTAGACACGGTTTCTTTGA+AGG | - | chr8.1:74985490-74985509 | None:intergenic | 45.0% | |
| TACAGCCAATGCTGGAATAG+GGG | + | chr8.1:74987277-74987296 | MS.gene060536:CDS | 45.0% | |
| TATTCCAGTTGGCACACACA+TGG | - | chr8.1:74987303-74987322 | None:intergenic | 45.0% | |
| TCCGGCAAAGATGATCGTTT+GGG | - | chr8.1:74987375-74987394 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.1:74985214-74985233 | None:intergenic | 45.0% | |
| ! | CTCTTTTGCCAATGGTGTGT+GGG | + | chr8.1:74985437-74985456 | MS.gene060536:CDS | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.1:74985486-74985505 | None:intergenic | 45.0% |
| ! | GATCGATGGATTTGAAACGG+AGG | - | chr8.1:74985344-74985363 | None:intergenic | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.1:74985173-74985192 | None:intergenic | 45.0% |
| ! | TCTCTTTTGCCAATGGTGTG+TGG | + | chr8.1:74985436-74985455 | MS.gene060536:CDS | 45.0% |
| !! | AGCGGGAGTAGCCTTATAAT+CGG | - | chr8.1:74985511-74985530 | None:intergenic | 45.0% |
| AAAAGAGAGGCGAGGACCAT+CGG | - | chr8.1:74985424-74985443 | None:intergenic | 50.0% | |
| AAAGACGCAGCTTCTTCCGA+TGG | + | chr8.1:74985405-74985424 | MS.gene060536:CDS | 50.0% | |
| AACGATCATCTTTGCCGGAC+AGG | + | chr8.1:74987376-74987395 | MS.gene060536:CDS | 50.0% | |
| AAGCTGTCAACTGACCCTTG+AGG | - | chr8.1:74986726-74986745 | None:intergenic | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.1:74985209-74985228 | None:intergenic | 50.0% | |
| CTGGTTCAAGGTTGAACCGA+CGG | + | chr8.1:74986184-74986203 | MS.gene060536:intron | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.1:74985208-74985227 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.1:74985190-74985209 | None:intergenic | 50.0% | |
| GCTACAGCCAATGCTGGAAT+AGG | + | chr8.1:74987275-74987294 | MS.gene060536:CDS | 50.0% | |
| GCTTAATTGGCTAGGCTGGA+TGG | + | chr8.1:74986146-74986165 | MS.gene060536:intron | 50.0% | |
| GTCCGGCAAAGATGATCGTT+TGG | - | chr8.1:74987376-74987395 | None:intergenic | 50.0% | |
| TGACTGAGCTGCGATTCAGA+AGG | - | chr8.1:74986839-74986858 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.1:74985194-74985213 | None:intergenic | 50.0% | |
| TTTCTCCACCCACACACCAT+TGG | - | chr8.1:74985448-74985467 | None:intergenic | 50.0% | |
| ! | AAGAAGCTGCGTCTTTGAGG+AGG | - | chr8.1:74985401-74985420 | None:intergenic | 50.0% |
| ! | CGTCTTTGAGGAGGACAGAA+AGG | - | chr8.1:74985392-74985411 | None:intergenic | 50.0% |
| ! | TTTTGCCAATGGTGTGTGGG+TGG | + | chr8.1:74985440-74985459 | MS.gene060536:CDS | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+CGG | + | chr8.1:74985291-74985310 | MS.gene060536:CDS | 50.0% |
| AGCCAGCAGCAATGATGCTG+AGG | - | chr8.1:74985287-74985306 | None:intergenic | 55.0% | |
| CATGGCCCCTATTCCAGCAT+TGG | - | chr8.1:74987285-74987304 | None:intergenic | 55.0% | |
| CCATTGGCAAAAGAGAGGCG+AGG | - | chr8.1:74985432-74985451 | None:intergenic | 55.0% | |
| CGGAAGAAGCTGCGTCTTTG+AGG | - | chr8.1:74985404-74985423 | None:intergenic | 55.0% | |
| GAAGCTGCTACAGCCAATGC+TGG | + | chr8.1:74987269-74987288 | MS.gene060536:CDS | 55.0% | |
| GTCCTCAGCATCATTGCTGC+TGG | + | chr8.1:74985282-74985301 | MS.gene060536:CDS | 55.0% | |
| TGCAAGGAAGCTTGGGCTCT+AGG | - | chr8.1:74987043-74987062 | None:intergenic | 55.0% | |
| ! | CCTCGCCTCTCTTTTGCCAA+TGG | + | chr8.1:74985429-74985448 | MS.gene060536:CDS | 55.0% |
| GGGGCCATGTGTGTGCCAAC+TGG | + | chr8.1:74987296-74987315 | MS.gene060536:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 74985162 | 74987421 | 74985162 | ID=MS.gene060536 |
| chr8.1 | mRNA | 74985162 | 74987421 | 74985162 | ID=MS.gene060536.t1;Parent=MS.gene060536 |
| chr8.1 | exon | 74985162 | 74985551 | 74985162 | ID=MS.gene060536.t1.exon1;Parent=MS.gene060536.t1 |
| chr8.1 | CDS | 74985162 | 74985551 | 74985162 | ID=cds.MS.gene060536.t1;Parent=MS.gene060536.t1 |
| chr8.1 | exon | 74986651 | 74987421 | 74986651 | ID=MS.gene060536.t1.exon2;Parent=MS.gene060536.t1 |
| chr8.1 | CDS | 74986651 | 74987421 | 74986651 | ID=cds.MS.gene060536.t1;Parent=MS.gene060536.t1 |
| Gene Sequence |
| Protein sequence |
