Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060538.t1 | XP_013444598.1 | 84.2 | 393 | 62 | 0 | 20 | 412 | 5 | 397 | 3.20E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060538.t1 | Q9S7T8 | 55.3 | 389 | 161 | 5 | 32 | 410 | 5 | 390 | 1.5e-116 | 421.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060538.t1 | A0A072TP44 | 84.2 | 393 | 62 | 0 | 20 | 412 | 5 | 397 | 2.3e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene060538 | PPI |
| MS.gene060538 | MS.gene045585 | PPI |
| MS.gene065945 | MS.gene060538 | PPI |
| MS.gene031697 | MS.gene060538 | PPI |
| MS.gene060538 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060538.t1 | MTR_8g027395 | 84.224 | 393 | 62 | 0 | 20 | 412 | 5 | 397 | 0.0 | 671 |
| MS.gene060538.t1 | MTR_8g027420 | 83.938 | 386 | 51 | 1 | 27 | 412 | 1 | 375 | 0.0 | 648 |
| MS.gene060538.t1 | MTR_4g088535 | 74.541 | 381 | 81 | 1 | 31 | 411 | 6 | 370 | 0.0 | 555 |
| MS.gene060538.t1 | MTR_4g088525 | 75.278 | 360 | 89 | 0 | 51 | 410 | 8 | 367 | 0.0 | 546 |
| MS.gene060538.t1 | MTR_3g101010 | 71.318 | 387 | 107 | 1 | 30 | 412 | 3 | 389 | 0.0 | 543 |
| MS.gene060538.t1 | MTR_3g018740 | 72.656 | 384 | 102 | 2 | 30 | 410 | 3 | 386 | 0.0 | 533 |
| MS.gene060538.t1 | MTR_4g045707 | 68.930 | 383 | 117 | 2 | 32 | 412 | 6 | 388 | 0.0 | 518 |
| MS.gene060538.t1 | MTR_2g045980 | 67.700 | 387 | 116 | 3 | 30 | 410 | 3 | 386 | 4.64e-180 | 507 |
| MS.gene060538.t1 | MTR_2g046030 | 66.925 | 387 | 119 | 3 | 30 | 410 | 3 | 386 | 1.84e-177 | 500 |
| MS.gene060538.t1 | MTR_3g048000 | 62.808 | 406 | 125 | 5 | 9 | 411 | 9 | 391 | 9.97e-175 | 493 |
| MS.gene060538.t1 | MTR_8g461160 | 64.599 | 387 | 129 | 2 | 32 | 410 | 6 | 392 | 3.08e-172 | 487 |
| MS.gene060538.t1 | MTR_3g101180 | 64.975 | 394 | 124 | 4 | 32 | 411 | 6 | 399 | 4.01e-172 | 487 |
| MS.gene060538.t1 | MTR_3g101030 | 61.871 | 417 | 131 | 7 | 22 | 412 | 15 | 429 | 9.21e-172 | 487 |
| MS.gene060538.t1 | MTR_7g050810 | 60.794 | 403 | 148 | 3 | 18 | 412 | 4 | 404 | 1.48e-168 | 478 |
| MS.gene060538.t1 | MTR_3g101130 | 61.832 | 393 | 139 | 3 | 27 | 412 | 1 | 389 | 3.32e-165 | 469 |
| MS.gene060538.t1 | MTR_7g050750 | 60.358 | 391 | 147 | 2 | 30 | 412 | 6 | 396 | 3.60e-163 | 464 |
| MS.gene060538.t1 | MTR_7g451890 | 59.847 | 391 | 149 | 2 | 30 | 412 | 12 | 402 | 1.34e-162 | 463 |
| MS.gene060538.t1 | MTR_7g047780 | 60.358 | 391 | 147 | 2 | 30 | 412 | 12 | 402 | 6.52e-162 | 461 |
| MS.gene060538.t1 | MTR_3g101050 | 63.185 | 383 | 118 | 5 | 34 | 410 | 31 | 396 | 5.53e-153 | 438 |
| MS.gene060538.t1 | MTR_3g015620 | 57.895 | 418 | 128 | 5 | 1 | 410 | 1 | 378 | 8.18e-149 | 427 |
| MS.gene060538.t1 | MTR_3g102920 | 55.396 | 417 | 141 | 7 | 3 | 411 | 30 | 409 | 6.70e-141 | 408 |
| MS.gene060538.t1 | MTR_3g101200 | 55.155 | 388 | 143 | 5 | 30 | 411 | 29 | 391 | 5.03e-131 | 382 |
| MS.gene060538.t1 | MTR_3g101190 | 55.801 | 362 | 101 | 3 | 51 | 412 | 10 | 312 | 1.94e-126 | 368 |
| MS.gene060538.t1 | MTR_3g100995 | 66.406 | 256 | 81 | 3 | 160 | 412 | 11 | 264 | 3.82e-116 | 340 |
| MS.gene060538.t1 | MTR_3g100010 | 58.710 | 310 | 80 | 2 | 57 | 333 | 42 | 336 | 3.00e-114 | 338 |
| MS.gene060538.t1 | MTR_3g018747 | 66.795 | 259 | 68 | 3 | 156 | 410 | 9 | 253 | 1.21e-112 | 330 |
| MS.gene060538.t1 | MTR_7g050830 | 53.628 | 317 | 114 | 3 | 30 | 324 | 14 | 319 | 1.44e-108 | 323 |
| MS.gene060538.t1 | MTR_3g015760 | 58.929 | 280 | 105 | 5 | 137 | 410 | 4 | 279 | 1.58e-98 | 295 |
| MS.gene060538.t1 | MTR_3g114310 | 44.246 | 391 | 199 | 10 | 37 | 412 | 24 | 410 | 6.99e-93 | 286 |
| MS.gene060538.t1 | MTR_3g100520 | 66.514 | 218 | 62 | 4 | 197 | 412 | 1 | 209 | 1.02e-91 | 275 |
| MS.gene060538.t1 | MTR_3g111160 | 66.505 | 206 | 66 | 2 | 210 | 412 | 15 | 220 | 6.44e-87 | 263 |
| MS.gene060538.t1 | MTR_3g101110 | 59.167 | 240 | 62 | 4 | 156 | 386 | 68 | 280 | 5.65e-84 | 258 |
| MS.gene060538.t1 | MTR_2g046410 | 62.963 | 216 | 71 | 3 | 201 | 410 | 135 | 347 | 4.60e-82 | 256 |
| MS.gene060538.t1 | MTR_3g099970 | 65.306 | 196 | 51 | 2 | 156 | 351 | 20 | 198 | 2.65e-80 | 246 |
| MS.gene060538.t1 | MTR_3g102870 | 64.780 | 159 | 56 | 0 | 221 | 379 | 3 | 161 | 1.66e-65 | 207 |
| MS.gene060538.t1 | MTR_3g111150 | 60.894 | 179 | 46 | 2 | 35 | 213 | 2 | 156 | 9.60e-65 | 205 |
| MS.gene060538.t1 | MTR_3g101020 | 56.452 | 186 | 52 | 3 | 230 | 412 | 1 | 160 | 2.98e-61 | 196 |
| MS.gene060538.t1 | MTR_3g101150 | 61.392 | 158 | 53 | 1 | 262 | 411 | 1 | 158 | 2.31e-58 | 188 |
| MS.gene060538.t1 | MTR_3g100990 | 66.000 | 150 | 50 | 1 | 32 | 181 | 5 | 153 | 1.19e-55 | 191 |
| MS.gene060538.t1 | MTR_4g093550 | 66.292 | 89 | 30 | 0 | 27 | 115 | 1 | 89 | 2.41e-33 | 120 |
| MS.gene060538.t1 | MTR_6g046890 | 65.278 | 72 | 25 | 0 | 40 | 111 | 7 | 78 | 6.67e-22 | 91.3 |
| MS.gene060538.t1 | MTR_3g101140 | 59.420 | 69 | 23 | 1 | 349 | 412 | 48 | 116 | 5.28e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060538.t1 | AT1G47710 | 55.270 | 389 | 161 | 5 | 32 | 410 | 5 | 390 | 1.41e-149 | 429 |
| MS.gene060538.t1 | AT1G47710 | 54.774 | 398 | 165 | 6 | 25 | 410 | 23 | 417 | 3.60e-149 | 429 |
| MS.gene060538.t1 | AT3G45220 | 47.179 | 390 | 194 | 4 | 30 | 409 | 3 | 390 | 1.06e-124 | 366 |
| MS.gene060538.t1 | AT2G25240 | 50.000 | 386 | 181 | 7 | 30 | 409 | 3 | 382 | 1.36e-124 | 366 |
| MS.gene060538.t1 | AT2G26390 | 47.970 | 394 | 181 | 8 | 30 | 409 | 3 | 386 | 8.89e-119 | 351 |
| MS.gene060538.t1 | AT2G14540 | 44.279 | 402 | 188 | 8 | 19 | 409 | 21 | 397 | 1.56e-100 | 305 |
| MS.gene060538.t1 | AT1G62170 | 40.657 | 396 | 201 | 6 | 26 | 409 | 58 | 431 | 2.73e-99 | 303 |
| MS.gene060538.t1 | AT1G64030 | 42.526 | 388 | 192 | 5 | 32 | 409 | 5 | 371 | 2.81e-99 | 301 |
| MS.gene060538.t1 | AT1G62170 | 37.995 | 429 | 199 | 8 | 26 | 409 | 58 | 464 | 2.97e-92 | 286 |
| MS.gene060538.t1 | AT2G35580 | 40.547 | 402 | 196 | 8 | 17 | 409 | 4 | 371 | 3.66e-91 | 280 |
| MS.gene060538.t1 | AT1G64010 | 44.907 | 216 | 95 | 4 | 197 | 409 | 1 | 195 | 6.38e-59 | 191 |
| MS.gene060538.t1 | AT1G64010 | 44.279 | 201 | 88 | 4 | 212 | 409 | 2 | 181 | 1.89e-52 | 174 |
| MS.gene060538.t1 | AT1G63280 | 54.237 | 118 | 50 | 2 | 153 | 268 | 5 | 120 | 3.16e-35 | 126 |
| MS.gene060538.t1 | AT1G62160 | 38.068 | 176 | 88 | 4 | 236 | 409 | 62 | 218 | 2.33e-33 | 125 |
| MS.gene060538.t1 | AT1G51330 | 54.464 | 112 | 48 | 3 | 154 | 262 | 29 | 140 | 3.68e-28 | 110 |
| MS.gene060538.t1 | AT1G64020 | 34.211 | 114 | 68 | 4 | 37 | 146 | 10 | 120 | 2.06e-12 | 64.3 |
| MS.gene060538.t1 | AT2G35555 | 36.538 | 104 | 44 | 2 | 276 | 377 | 1 | 84 | 3.47e-11 | 60.8 |
Find 85 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.1:+74978838 | MS.gene060538:CDS |
| GTGAGTTTACCTTTCTCTTC+TGG | 0.237208 | 8.1:+74979326 | MS.gene060538:CDS |
| CTCAAAGATGCTGCTTCTTC+TGG | 0.245520 | 8.1:+74977995 | MS.gene060538:CDS |
| ACCCAAGCAATCCTCTTTGC+AGG | 0.313022 | 8.1:+74979548 | MS.gene060538:CDS |
| GTAATCCATTTCCTGATTCT+AGG | 0.316684 | 8.1:+74978970 | MS.gene060538:CDS |
| AACCGTGTCATCTGATTATA+AGG | 0.319424 | 8.1:+74978090 | MS.gene060538:CDS |
| CCAAATGAAAATTTGAATCT+TGG | 0.344733 | 8.1:-74979269 | None:intergenic |
| CAAGTTCTCAATCCTCTTGT+TGG | 0.402792 | 8.1:+74979572 | MS.gene060538:CDS |
| CCGTTTGTTGATTGAATCAC+AGG | 0.404344 | 8.1:-74977684 | None:intergenic |
| ATCATTGCTGCTGGCTCTGA+GGG | 0.408699 | 8.1:+74977884 | MS.gene060538:CDS |
| GAAGCTGCTGCGACCAGTGC+TGG | 0.410204 | 8.1:+74979446 | MS.gene060538:CDS |
| AAACGGAAAAGAACGGTTCT+TGG | 0.412748 | 8.1:+74977701 | MS.gene060538:CDS |
| TCCTGCAAAGAGGATTGCTT+GGG | 0.416627 | 8.1:-74979549 | None:intergenic |
| TATTCGCTTGTCCTAGAATC+AGG | 0.416913 | 8.1:-74978981 | None:intergenic |
| CAAAGTAACATACCTTGTTC+AGG | 0.425889 | 8.1:-74978135 | None:intergenic |
| AAGTTCTCAATCCTCTTGTT+GGG | 0.429816 | 8.1:+74979573 | MS.gene060538:CDS |
| CTTGTCCTAGAATCAGGAAA+TGG | 0.440650 | 8.1:-74978975 | None:intergenic |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.1:+74979302 | MS.gene060538:CDS |
| GTCCTGCAAAGAGGATTGCT+TGG | 0.443239 | 8.1:-74979550 | None:intergenic |
| CTCTTTCGCCAATGGTGTGT+GGG | 0.444711 | 8.1:+74978030 | MS.gene060538:CDS |
| GCTATAAAGTCTATTCCTCT+TGG | 0.447224 | 8.1:-74979488 | None:intergenic |
| CCTCGCCTCTCTTTCGCCAA+TGG | 0.447900 | 8.1:+74978022 | MS.gene060538:CDS |
| GTTCTCAGCATCATTGCTGC+TGG | 0.450530 | 8.1:+74977875 | MS.gene060538:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.1:+74978839 | MS.gene060538:CDS |
| AGATGACACGGTTTCTTTGA+AGG | 0.458100 | 8.1:-74978080 | None:intergenic |
| TCTCTAATTAGAAATAGAAA+AGG | 0.472534 | 8.1:-74979518 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.1:+74978886 | MS.gene060538:CDS |
| CAGAAGAAGCAGCATCTTTG+AGG | 0.479221 | 8.1:-74977994 | None:intergenic |
| TAAGGCCACTTTGTCTTCTG+TGG | 0.483558 | 8.1:+74978108 | MS.gene060538:CDS |
| CTTCGTCTTCCTTATAAACA+AGG | 0.483822 | 8.1:+74979098 | MS.gene060538:CDS |
| CATCATTGCTGCTGGCTCTG+AGG | 0.484489 | 8.1:+74977883 | MS.gene060538:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.1:+74979359 | MS.gene060538:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.1:+74978885 | MS.gene060538:CDS |
| GAAGGAAGGTTGAAGACAAA+GGG | 0.489318 | 8.1:-74978062 | None:intergenic |
| CATCTTTGAGGAGGACAGAA+AGG | 0.490209 | 8.1:-74977982 | None:intergenic |
| GAAAGACTTGTGAAATATGT+TGG | 0.499945 | 8.1:-74979399 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 8.1:-74979335 | None:intergenic |
| CTCTAATTAGAAATAGAAAA+GGG | 0.520858 | 8.1:-74979517 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.1:-74977799 | None:intergenic |
| GGTTGGTGCTTGATTCATCA+AGG | 0.525769 | 8.1:-74977763 | None:intergenic |
| AAAGATGCTGCTTCTTCTGG+TGG | 0.527819 | 8.1:+74977998 | MS.gene060538:CDS |
| AGTTTACCTTTCTCTTCTGG+AGG | 0.529550 | 8.1:+74979329 | MS.gene060538:CDS |
| GACACGGTTTCTTTGAAGGA+AGG | 0.532013 | 8.1:-74978076 | None:intergenic |
| AAGCACTAATAAATTGATGA+AGG | 0.534035 | 8.1:-74979058 | None:intergenic |
| CAAGGCCACCTTTCCAGCAC+TGG | 0.535124 | 8.1:-74979459 | None:intergenic |
| TCTCTTTCGCCAATGGTGTG+TGG | 0.536811 | 8.1:+74978029 | MS.gene060538:CDS |
| CAATGATGCTGAGAACAACT+TGG | 0.536897 | 8.1:-74977868 | None:intergenic |
| TGCTGCGACCAGTGCTGGAA+AGG | 0.541851 | 8.1:+74979451 | MS.gene060538:CDS |
| TTCTGTGGATTTCCTGAACA+AGG | 0.543973 | 8.1:+74978123 | MS.gene060538:CDS |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.1:-74977780 | None:intergenic |
| CCTGTGATTCAATCAACAAA+CGG | 0.556480 | 8.1:+74977684 | MS.gene060538:CDS |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.1:+74979295 | MS.gene060538:CDS |
| ATGAAGGTTGCTGTTCATGA+AGG | 0.557210 | 8.1:-74979042 | None:intergenic |
| TCTGAATGGCTGCTCAGTCA+AGG | 0.561229 | 8.1:+74979016 | MS.gene060538:CDS |
| TGAAGGAAGGTTGAAGACAA+AGG | 0.562109 | 8.1:-74978063 | None:intergenic |
| TCGAGAAGCTGTTGTTGAGT+AGG | 0.564349 | 8.1:-74977908 | None:intergenic |
| TTCATTGAAGTAAACGAGGA+AGG | 0.566637 | 8.1:+74979419 | MS.gene060538:CDS |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.1:-74977798 | None:intergenic |
| CGTTTGTTGATTGAATCACA+GGG | 0.575081 | 8.1:-74977683 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.1:-74979388 | None:intergenic |
| TGCGACCAGTGCTGGAAAGG+TGG | 0.578488 | 8.1:+74979454 | MS.gene060538:CDS |
| AGAACAAGAGGAACAAACAT+TGG | 0.583596 | 8.1:+74977736 | MS.gene060538:CDS |
| TGAGAACTTGTCCTGCAAAG+AGG | 0.585568 | 8.1:-74979559 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.1:-74977784 | None:intergenic |
| AGTTAAGATCACCCAACAAG+AGG | 0.592610 | 8.1:-74979584 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594662 | 8.1:+74979166 | MS.gene060538:CDS |
| ACTATCAGCTATGGTTGAGA+AGG | 0.605629 | 8.1:+74979175 | MS.gene060538:CDS |
| AAAAGAGTTGAGATGATCAG+TGG | 0.610674 | 8.1:-74977948 | None:intergenic |
| TGATGAATCAAAAGAACAAG+AGG | 0.613184 | 8.1:+74977724 | MS.gene060538:CDS |
| ACACACCATTGGCGAAAGAG+AGG | 0.625171 | 8.1:-74978027 | None:intergenic |
| TTTCGCCAATGGTGTGTGGG+TGG | 0.626286 | 8.1:+74978033 | MS.gene060538:CDS |
| AGAACAACTTGGAGAGACAA+TGG | 0.632240 | 8.1:-74977857 | None:intergenic |
| AATCAACAAACGGAAAAGAA+CGG | 0.637048 | 8.1:+74977694 | MS.gene060538:CDS |
| TGACTGAGCAGCCATTCAGA+AGG | 0.641179 | 8.1:-74979013 | None:intergenic |
| TGAAGGTTGCTGTTCATGAA+GGG | 0.644764 | 8.1:-74979041 | None:intergenic |
| AAGAAGCAGCATCTTTGAGG+AGG | 0.648399 | 8.1:-74977991 | None:intergenic |
| GAAATCCACAGAAGACAAAG+TGG | 0.650231 | 8.1:-74978113 | None:intergenic |
| GGCCTTATAATCAGATGACA+CGG | 0.650681 | 8.1:-74978092 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.1:-74977804 | None:intergenic |
| GATCAGTGGATTTGAAACGA+AGG | 0.668797 | 8.1:-74977934 | None:intergenic |
| GTCTTTCATTGAAGTAAACG+AGG | 0.668981 | 8.1:+74979415 | MS.gene060538:CDS |
| TATTCCTCTTGGAATACACA+AGG | 0.692487 | 8.1:-74979477 | None:intergenic |
| GTGGCCTTGTGTATTCCAAG+AGG | 0.698635 | 8.1:+74979473 | MS.gene060538:CDS |
| GAGCTGACAACTGACCCTTG+AGG | 0.759020 | 8.1:-74978900 | None:intergenic |
| CCATTGGCGAAAGAGAGGCG+AGG | 0.781616 | 8.1:-74978022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTGATATGTTTTAA+AGG | + | chr8.1:74978806-74978825 | MS.gene060538:intron | 10.0% |
| !!! | TTTCAAATTTGATGTTTTAA+AGG | + | chr8.1:74978759-74978778 | MS.gene060538:intron | 15.0% |
| !! | CTCTAATTAGAAATAGAAAA+GGG | - | chr8.1:74979520-74979539 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAGAAA+AGG | - | chr8.1:74979521-74979540 | None:intergenic | 20.0% |
| !! | TGTAAAATAGTCATTTGAAT+AGG | + | chr8.1:74978484-74978503 | MS.gene060538:intron | 20.0% |
| !!! | AATGCATTTCTTGAAATTTT+TGG | + | chr8.1:74978208-74978227 | MS.gene060538:intron | 20.0% |
| !!! | CAAGATTCAAATTTTCATTT+GGG | + | chr8.1:74979270-74979289 | MS.gene060538:CDS | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | - | chr8.1:74979110-74979129 | None:intergenic | 20.0% |
| ! | AAGCACTAATAAATTGATGA+AGG | - | chr8.1:74979061-74979080 | None:intergenic | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.1:74978885-74978904 | MS.gene060538:CDS | 25.0% |
| ! | CCAAATGAAAATTTGAATCT+TGG | - | chr8.1:74979272-74979291 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.1:74978839-74978858 | MS.gene060538:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.1:74978838-74978857 | MS.gene060538:CDS | 25.0% |
| ! | TGTGACACAATTATAATACA+TGG | - | chr8.1:74978186-74978205 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.1:74978886-74978905 | MS.gene060538:CDS | 25.0% |
| ! | TTGGATGCTATAAAACAAAA+AGG | - | chr8.1:74978635-74978654 | None:intergenic | 25.0% |
| ! | TTTCTTCCAAATGAAAAAGA+TGG | + | chr8.1:74979152-74979171 | MS.gene060538:CDS | 25.0% |
| !! | AGTCTAATTTTCACATACTA+CGG | - | chr8.1:74978669-74978688 | None:intergenic | 25.0% |
| !! | CAATTTATTAGTGCTTTTGA+TGG | + | chr8.1:74979065-74979084 | MS.gene060538:CDS | 25.0% |
| !! | CCAAGATTCAAATTTTCATT+TGG | + | chr8.1:74979269-74979288 | MS.gene060538:CDS | 25.0% |
| AAGCTTCCGTATAAAAAAGT+AGG | + | chr8.1:74979227-74979246 | MS.gene060538:CDS | 30.0% | |
| AATCAACAAACGGAAAAGAA+CGG | + | chr8.1:74977694-74977713 | MS.gene060538:CDS | 30.0% | |
| ACATCTGTGTTTATCTAGAA+GGG | + | chr8.1:74978518-74978537 | MS.gene060538:intron | 30.0% | |
| GAAAGACTTGTGAAATATGT+TGG | - | chr8.1:74979402-74979421 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.1:74979391-74979410 | None:intergenic | 30.0% | |
| GTTTATCTAGAAGGGAAAAA+AGG | + | chr8.1:74978526-74978545 | MS.gene060538:intron | 30.0% | |
| TACATCTGTGTTTATCTAGA+AGG | + | chr8.1:74978517-74978536 | MS.gene060538:intron | 30.0% | |
| TGATGAATCAAAAGAACAAG+AGG | + | chr8.1:74977724-74977743 | MS.gene060538:CDS | 30.0% | |
| TGCTATAAAACAAAAAGGAG+AGG | - | chr8.1:74978630-74978649 | None:intergenic | 30.0% | |
| TGCTTCTTCAAAAGAATGAA+AGG | + | chr8.1:74978461-74978480 | MS.gene060538:intron | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | + | chr8.1:74978383-74978402 | MS.gene060538:intron | 30.0% | |
| ! | GTCTAATTTTCACATACTAC+GGG | - | chr8.1:74978668-74978687 | None:intergenic | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.1:74979002-74979021 | MS.gene060538:CDS | 30.0% |
| ! | TCTAATTTTCACATACTACG+GGG | - | chr8.1:74978667-74978686 | None:intergenic | 30.0% |
| !! | GATAGTCCATCTTTTTCATT+TGG | - | chr8.1:74979161-74979180 | None:intergenic | 30.0% |
| !! | GCTAATGCACTGTATTTTAA+AGG | + | chr8.1:74978939-74978958 | MS.gene060538:CDS | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.1:74977813-74977832 | None:intergenic | 30.0% |
| !!! | CCTACTCCTACTTTTTTATA+CGG | - | chr8.1:74979236-74979255 | None:intergenic | 30.0% |
| !!! | CTGTTACTCTAGAATCATTT+TGG | - | chr8.1:74978596-74978615 | None:intergenic | 30.0% |
| !!! | CTTGCACTTGCTTTTTTAAA+TGG | + | chr8.1:74978262-74978281 | MS.gene060538:intron | 30.0% |
| !!! | GTAGTTTTTTTCCTCTGTAT+AGG | + | chr8.1:74978422-74978441 | MS.gene060538:intron | 30.0% |
| !!! | TTGTTATTTTACCCTTAGTC+TGG | + | chr8.1:74978343-74978362 | MS.gene060538:intron | 30.0% |
| AAAAGAGTTGAGATGATCAG+TGG | - | chr8.1:74977951-74977970 | None:intergenic | 35.0% | |
| AACCGTGTCATCTGATTATA+AGG | + | chr8.1:74978090-74978109 | MS.gene060538:CDS | 35.0% | |
| AAGTTCTCAATCCTCTTGTT+GGG | + | chr8.1:74979573-74979592 | MS.gene060538:CDS | 35.0% | |
| AGAACAAGAGGAACAAACAT+TGG | + | chr8.1:74977736-74977755 | MS.gene060538:CDS | 35.0% | |
| CAAAGTAACATACCTTGTTC+AGG | - | chr8.1:74978138-74978157 | None:intergenic | 35.0% | |
| CCGTATAAAAAAGTAGGAGT+AGG | + | chr8.1:74979233-74979252 | MS.gene060538:CDS | 35.0% | |
| CCTGTGATTCAATCAACAAA+CGG | + | chr8.1:74977684-74977703 | MS.gene060538:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAACA+AGG | + | chr8.1:74979098-74979117 | MS.gene060538:CDS | 35.0% | |
| GCTATAAAGTCTATTCCTCT+TGG | - | chr8.1:74979491-74979510 | None:intergenic | 35.0% | |
| GTAATCCATTTCCTGATTCT+AGG | + | chr8.1:74978970-74978989 | MS.gene060538:CDS | 35.0% | |
| GTCTTTCATTGAAGTAAACG+AGG | + | chr8.1:74979415-74979434 | MS.gene060538:CDS | 35.0% | |
| TACTACGGGGCTATATTATT+TGG | - | chr8.1:74978654-74978673 | None:intergenic | 35.0% | |
| TAGTTGTTAACGATGCTAAC+TGG | + | chr8.1:74978301-74978320 | MS.gene060538:intron | 35.0% | |
| TATTCCTCTTGGAATACACA+AGG | - | chr8.1:74979480-74979499 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.1:74979295-74979314 | MS.gene060538:CDS | 35.0% | |
| TTAACGATGCTAACTGGATT+TGG | + | chr8.1:74978307-74978326 | MS.gene060538:intron | 35.0% | |
| TTCATTGAAGTAAACGAGGA+AGG | + | chr8.1:74979419-74979438 | MS.gene060538:CDS | 35.0% | |
| ! | CGTTTGTTGATTGAATCACA+GGG | - | chr8.1:74977686-74977705 | None:intergenic | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | + | chr8.1:74979343-74979362 | MS.gene060538:CDS | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.1:74979166-74979185 | MS.gene060538:CDS | 35.0% |
| !! | CACTGTATTTTAAAGGAGCA+TGG | + | chr8.1:74978946-74978965 | MS.gene060538:CDS | 35.0% |
| AAACGGAAAAGAACGGTTCT+TGG | + | chr8.1:74977701-74977720 | MS.gene060538:CDS | 40.0% | |
| ACAAGCTAAGTCCTATACAG+AGG | - | chr8.1:74978436-74978455 | None:intergenic | 40.0% | |
| ACTATCAGCTATGGTTGAGA+AGG | + | chr8.1:74979175-74979194 | MS.gene060538:CDS | 40.0% | |
| AGAACAACTTGGAGAGACAA+TGG | - | chr8.1:74977860-74977879 | None:intergenic | 40.0% | |
| AGATGACACGGTTTCTTTGA+AGG | - | chr8.1:74978083-74978102 | None:intergenic | 40.0% | |
| AGTTTACCTTTCTCTTCTGG+AGG | + | chr8.1:74979329-74979348 | MS.gene060538:CDS | 40.0% | |
| CAAGTTCTCAATCCTCTTGT+TGG | + | chr8.1:74979572-74979591 | MS.gene060538:CDS | 40.0% | |
| CAATGATGCTGAGAACAACT+TGG | - | chr8.1:74977871-74977890 | None:intergenic | 40.0% | |
| CTTGTCCTAGAATCAGGAAA+TGG | - | chr8.1:74978978-74978997 | None:intergenic | 40.0% | |
| GAAATCCACAGAAGACAAAG+TGG | - | chr8.1:74978116-74978135 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGACAAA+GGG | - | chr8.1:74978065-74978084 | None:intergenic | 40.0% | |
| GTGAGTTTACCTTTCTCTTC+TGG | + | chr8.1:74979326-74979345 | MS.gene060538:CDS | 40.0% | |
| TATACCAAGCCAGGATGAAA+TGG | - | chr8.1:74978395-74978414 | None:intergenic | 40.0% | |
| TATTCGCTTGTCCTAGAATC+AGG | - | chr8.1:74978984-74979003 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.1:74979302-74979321 | MS.gene060538:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGACAA+AGG | - | chr8.1:74978066-74978085 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.1:74979346-74979365 | MS.gene060538:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.1:74978858-74978877 | MS.gene060538:CDS | 40.0% | |
| TTCTGTGGATTTCCTGAACA+AGG | + | chr8.1:74978123-74978142 | MS.gene060538:CDS | 40.0% | |
| ! | ATGAAGGTTGCTGTTCATGA+AGG | - | chr8.1:74979045-74979064 | None:intergenic | 40.0% |
| ! | CCGTTTGTTGATTGAATCAC+AGG | - | chr8.1:74977687-74977706 | None:intergenic | 40.0% |
| ! | GATCAGTGGATTTGAAACGA+AGG | - | chr8.1:74977937-74977956 | None:intergenic | 40.0% |
| ! | GGCCTTATAATCAGATGACA+CGG | - | chr8.1:74978095-74978114 | None:intergenic | 40.0% |
| ! | TGAAGGTTGCTGTTCATGAA+GGG | - | chr8.1:74979044-74979063 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.1:74979359-74979378 | MS.gene060538:CDS | 40.0% |
| AAGCTTCTGAGCCAGACTAA+GGG | - | chr8.1:74978357-74978376 | None:intergenic | 45.0% | |
| ACTCTTCTGTATACCAAGCC+AGG | - | chr8.1:74978404-74978423 | None:intergenic | 45.0% | |
| CAGAAGAAGCAGCATCTTTG+AGG | - | chr8.1:74977997-74978016 | None:intergenic | 45.0% | |
| CTTTCCATTTCATCCTGGCT+TGG | + | chr8.1:74978388-74978407 | MS.gene060538:intron | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | - | chr8.1:74979338-74979357 | None:intergenic | 45.0% | |
| TCCTGCAAAGAGGATTGCTT+GGG | - | chr8.1:74979552-74979571 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGAGT+AGG | - | chr8.1:74977911-74977930 | None:intergenic | 45.0% | |
| TGAGAACTTGTCCTGCAAAG+AGG | - | chr8.1:74979562-74979581 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.1:74977807-74977826 | None:intergenic | 45.0% | |
| ! | AAAGATGCTGCTTCTTCTGG+TGG | + | chr8.1:74977998-74978017 | MS.gene060538:CDS | 45.0% |
| ! | AAGAAGCAGCATCTTTGAGG+AGG | - | chr8.1:74977994-74978013 | None:intergenic | 45.0% |
| ! | CATCTTTGAGGAGGACAGAA+AGG | - | chr8.1:74977985-74978004 | None:intergenic | 45.0% |
| ! | CTCAAAGATGCTGCTTCTTC+TGG | + | chr8.1:74977995-74978014 | MS.gene060538:CDS | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.1:74978079-74978098 | None:intergenic | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.1:74977766-74977785 | None:intergenic | 45.0% |
| ! | TAAGGCCACTTTGTCTTCTG+TGG | + | chr8.1:74978108-74978127 | MS.gene060538:CDS | 45.0% |
| ACACACCATTGGCGAAAGAG+AGG | - | chr8.1:74978030-74978049 | None:intergenic | 50.0% | |
| ACCCAAGCAATCCTCTTTGC+AGG | + | chr8.1:74979548-74979567 | MS.gene060538:CDS | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.1:74977802-74977821 | None:intergenic | 50.0% | |
| CTCTTTCGCCAATGGTGTGT+GGG | + | chr8.1:74978030-74978049 | MS.gene060538:CDS | 50.0% | |
| GAAGCTTCTGAGCCAGACTA+AGG | - | chr8.1:74978358-74978377 | None:intergenic | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.1:74977801-74977820 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.1:74977783-74977802 | None:intergenic | 50.0% | |
| GTCCTGCAAAGAGGATTGCT+TGG | - | chr8.1:74979553-74979572 | None:intergenic | 50.0% | |
| GTTCTCAGCATCATTGCTGC+TGG | + | chr8.1:74977875-74977894 | MS.gene060538:CDS | 50.0% | |
| TCTCTTTCGCCAATGGTGTG+TGG | + | chr8.1:74978029-74978048 | MS.gene060538:CDS | 50.0% | |
| TCTGAATGGCTGCTCAGTCA+AGG | + | chr8.1:74979016-74979035 | MS.gene060538:CDS | 50.0% | |
| TGACTGAGCAGCCATTCAGA+AGG | - | chr8.1:74979016-74979035 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.1:74977787-74977806 | None:intergenic | 50.0% | |
| ! | CTTTTCCACCCACACACCAT+TGG | - | chr8.1:74978041-74978060 | None:intergenic | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+GGG | + | chr8.1:74977884-74977903 | MS.gene060538:CDS | 50.0% |
| !! | GTGGCCTTGTGTATTCCAAG+AGG | + | chr8.1:74979473-74979492 | MS.gene060538:CDS | 50.0% |
| GAGCTGACAACTGACCCTTG+AGG | - | chr8.1:74978903-74978922 | None:intergenic | 55.0% | |
| TTTCGCCAATGGTGTGTGGG+TGG | + | chr8.1:74978033-74978052 | MS.gene060538:CDS | 55.0% | |
| !! | CATCATTGCTGCTGGCTCTG+AGG | + | chr8.1:74977883-74977902 | MS.gene060538:CDS | 55.0% |
| CAAGGCCACCTTTCCAGCAC+TGG | - | chr8.1:74979462-74979481 | None:intergenic | 60.0% | |
| CCATTGGCGAAAGAGAGGCG+AGG | - | chr8.1:74978025-74978044 | None:intergenic | 60.0% | |
| CCTCGCCTCTCTTTCGCCAA+TGG | + | chr8.1:74978022-74978041 | MS.gene060538:CDS | 60.0% | |
| ! | TGCGACCAGTGCTGGAAAGG+TGG | + | chr8.1:74979454-74979473 | MS.gene060538:CDS | 60.0% |
| ! | TGCTGCGACCAGTGCTGGAA+AGG | + | chr8.1:74979451-74979470 | MS.gene060538:CDS | 60.0% |
| GAAGCTGCTGCGACCAGTGC+TGG | + | chr8.1:74979446-74979465 | MS.gene060538:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 74977677 | 74979598 | 74977677 | ID=MS.gene060538 |
| chr8.1 | mRNA | 74977677 | 74979598 | 74977677 | ID=MS.gene060538.t1;Parent=MS.gene060538 |
| chr8.1 | exon | 74977677 | 74978144 | 74977677 | ID=MS.gene060538.t1.exon1;Parent=MS.gene060538.t1 |
| chr8.1 | CDS | 74977677 | 74978144 | 74977677 | ID=cds.MS.gene060538.t1;Parent=MS.gene060538.t1 |
| chr8.1 | exon | 74978828 | 74979598 | 74978828 | ID=MS.gene060538.t1.exon2;Parent=MS.gene060538.t1 |
| chr8.1 | CDS | 74978828 | 74979598 | 74978828 | ID=cds.MS.gene060538.t1;Parent=MS.gene060538.t1 |
| Gene Sequence |
| Protein sequence |
