Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061162.t1 | XP_024625122.1 | 98.7 | 374 | 4 | 1 | 1 | 374 | 1 | 373 | 2.30E-203 | 718 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061162.t1 | Q9S845 | 80.3 | 346 | 65 | 2 | 30 | 372 | 25 | 370 | 1.1e-153 | 544.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061162.t1 | G7IES6 | 98.7 | 374 | 4 | 1 | 1 | 374 | 1 | 373 | 1.6e-203 | 718.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061162 | MS.gene28650 | 0.802003 | 6.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061162.t1 | MTR_1g100860 | 98.663 | 374 | 4 | 1 | 1 | 374 | 1 | 373 | 0.0 | 755 |
| MS.gene061162.t1 | MTR_4g018770 | 96.257 | 374 | 7 | 2 | 1 | 374 | 1 | 367 | 0.0 | 731 |
| MS.gene061162.t1 | MTR_1g100860 | 99.636 | 275 | 1 | 0 | 100 | 374 | 1 | 275 | 0.0 | 563 |
| MS.gene061162.t1 | MTR_4g018770 | 97.818 | 275 | 6 | 0 | 100 | 374 | 1 | 275 | 0.0 | 553 |
| MS.gene061162.t1 | MTR_4g113270 | 48.378 | 339 | 157 | 4 | 42 | 374 | 15 | 341 | 1.14e-101 | 304 |
| MS.gene061162.t1 | MTR_4g113270 | 51.118 | 313 | 144 | 3 | 42 | 348 | 15 | 324 | 1.43e-101 | 304 |
| MS.gene061162.t1 | MTR_3g463360 | 23.569 | 297 | 211 | 6 | 44 | 330 | 106 | 396 | 5.76e-12 | 67.0 |
| MS.gene061162.t1 | MTR_3g096310 | 23.145 | 337 | 227 | 10 | 22 | 344 | 24 | 342 | 6.25e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061162.t1 | AT1G76340 | 80.347 | 346 | 65 | 2 | 30 | 372 | 25 | 370 | 0.0 | 546 |
| MS.gene061162.t1 | AT5G19980 | 49.091 | 330 | 161 | 3 | 36 | 358 | 10 | 339 | 3.66e-101 | 303 |
| MS.gene061162.t1 | AT2G13650 | 24.333 | 300 | 213 | 5 | 46 | 336 | 39 | 333 | 2.22e-12 | 67.8 |
| MS.gene061162.t1 | AT2G13650 | 24.333 | 300 | 213 | 5 | 46 | 336 | 39 | 333 | 2.22e-12 | 67.8 |
Find 74 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGATTAATTTGGTGATA+TGG | 0.203404 | 1.4:+77929502 | MS.gene061162:CDS |
| GTTCATCAAATTTCAGTATA+TGG | 0.213733 | 1.4:+77928712 | MS.gene061162:CDS |
| CATGTGGGCGGTGGCGTATT+TGG | 0.213873 | 1.4:+77929164 | MS.gene061162:CDS |
| TCCCCTACAGCAACGAAAAT+TGG | 0.244454 | 1.4:-77929024 | None:intergenic |
| GGTCTGGCGATCTCTTTCTT+TGG | 0.299461 | 1.4:+77929408 | MS.gene061162:CDS |
| TGCTGTCAATTATCAACAAA+TGG | 0.310945 | 1.4:+77928767 | MS.gene061162:CDS |
| TCCGCTGGAATTGTTGATAA+TGG | 0.331742 | 1.4:+77929293 | MS.gene061162:CDS |
| CGCAGGGCTATTTCTGCAAC+TGG | 0.345581 | 1.4:+77929441 | MS.gene061162:CDS |
| GTGGCGTTGTCGTGCTTGTT+TGG | 0.347148 | 1.4:+77929387 | MS.gene061162:CDS |
| GTTGACGGTTATGATTAATT+TGG | 0.350016 | 1.4:+77929494 | MS.gene061162:CDS |
| TATGATTAATTTGGTGATAT+GGG | 0.359061 | 1.4:+77929503 | MS.gene061162:CDS |
| GCAACTGGATTTACTGTTCT+CGG | 0.370937 | 1.4:+77929456 | MS.gene061162:CDS |
| CCGCTGGAATTGTTGATAAT+GGG | 0.392791 | 1.4:+77929294 | MS.gene061162:CDS |
| AAATTCTTCACGTTACTAGT+AGG | 0.398839 | 1.4:-77928634 | None:intergenic |
| AATGAGAATGATGGTGTTGC+TGG | 0.408683 | 1.4:+77928670 | MS.gene061162:CDS |
| TTTGAAGACGTGGGCTTCGT+TGG | 0.410068 | 1.4:+77929077 | MS.gene061162:CDS |
| TTGAAGACGTGGGCTTCGTT+GGG | 0.412050 | 1.4:+77929078 | MS.gene061162:CDS |
| TAAACCGAAGGCTGCGATAC+AGG | 0.412609 | 1.4:+77929605 | MS.gene061162:CDS |
| GTTTCCTGTATCGCAGCCTT+CGG | 0.449049 | 1.4:-77929609 | None:intergenic |
| GCTGTCAATTATCAACAAAT+GGG | 0.454438 | 1.4:+77928768 | MS.gene061162:CDS |
| ATGATGGTGTTGCTGGAAAC+TGG | 0.466449 | 1.4:+77928677 | MS.gene061162:CDS |
| CAACGATTGAATTGAACACT+TGG | 0.468132 | 1.4:+77929229 | MS.gene061162:CDS |
| AATTTCAGTATCACTAATGT+TGG | 0.470014 | 1.4:-77929688 | None:intergenic |
| GTTGTCGTGCTTGTTTGGTC+TGG | 0.470531 | 1.4:+77929392 | MS.gene061162:CDS |
| ATACTGAAATTAATAAATCA+AGG | 0.471333 | 1.4:+77929700 | MS.gene061162:CDS |
| AATTCTTCACGTTACTAGTA+GGG | 0.474774 | 1.4:-77928633 | None:intergenic |
| CACTGTTGGTAAACAGTGAC+AGG | 0.483050 | 1.4:-77928948 | None:intergenic |
| TACTTTCATTGTGTTCCGAT+CGG | 0.492664 | 1.4:+77928996 | MS.gene061162:CDS |
| TCAGTATATGGTGTTGCTGC+TGG | 0.493201 | 1.4:+77928724 | MS.gene061162:CDS |
| AACGCCACAGGCAAAACCAC+AGG | 0.500816 | 1.4:-77929372 | None:intergenic |
| AACAAGCACGACAACGCCAC+AGG | 0.501250 | 1.4:-77929384 | None:intergenic |
| TGCGGCTTACATGTGGGCGG+TGG | 0.503669 | 1.4:+77929155 | MS.gene061162:CDS |
| TGTAACGCGGTAAGCGCACC+CGG | 0.509471 | 1.4:-77928811 | None:intergenic |
| CAGTGTTTCTGCATCGGCCG+TGG | 0.509990 | 1.4:+77929049 | MS.gene061162:CDS |
| TTTGATTTGTATGCTAGGTG+GGG | 0.511236 | 1.4:+77929560 | MS.gene061162:CDS |
| TCGTTGGGAACTATATTCGC+TGG | 0.512357 | 1.4:+77929093 | MS.gene061162:CDS |
| TGTCATGAAATTTCCTTACC+CGG | 0.516107 | 1.4:+77928792 | MS.gene061162:CDS |
| TATAGTGAATAAGTTGTTGA+CGG | 0.516373 | 1.4:+77929479 | MS.gene061162:CDS |
| AACGATTGAATTGAACACTT+GGG | 0.519198 | 1.4:+77929230 | MS.gene061162:CDS |
| TAGCAAAACTCCGGCAGCAC+TGG | 0.521554 | 1.4:-77928842 | None:intergenic |
| CAGTACTTCACCAGTGCTGC+CGG | 0.521678 | 1.4:+77928832 | MS.gene061162:CDS |
| CGTGGCCGTCTTTGAAGACG+TGG | 0.524674 | 1.4:+77929067 | MS.gene061162:CDS |
| GCGGTAAGCGCACCCGGGTA+AGG | 0.528937 | 1.4:-77928805 | None:intergenic |
| TCGACGTGGGTGGGTACAGT+GGG | 0.543028 | 1.4:+77929534 | MS.gene061162:CDS |
| TTTGCTATGTGGATGGCTCA+AGG | 0.548441 | 1.4:+77928858 | MS.gene061162:CDS |
| AGATCACTGATGAGTCTGAT+TGG | 0.551515 | 1.4:+77929340 | MS.gene061162:CDS |
| CGAAAATTGGAACAGCCGAT+CGG | 0.559850 | 1.4:-77929011 | None:intergenic |
| GGGAGTCAGTGTTTCTGCAT+CGG | 0.560622 | 1.4:+77929043 | MS.gene061162:CDS |
| CTCGACGTGGGTGGGTACAG+TGG | 0.569198 | 1.4:+77929533 | MS.gene061162:CDS |
| GTCATGAAATTTCCTTACCC+GGG | 0.580675 | 1.4:+77928793 | MS.gene061162:CDS |
| TGTGTTGTACAATAATATTG+AGG | 0.586598 | 1.4:+77929257 | MS.gene061162:CDS |
| GAAATTAATAAATCAAGGGA+AGG | 0.592364 | 1.4:+77929705 | MS.gene061162:CDS |
| ACGATTGAATTGAACACTTG+GGG | 0.594882 | 1.4:+77929231 | MS.gene061162:CDS |
| CACAATGAAAGTATCTACAT+TGG | 0.608222 | 1.4:-77928986 | None:intergenic |
| GAAGCCCACGTCTTCAAAGA+CGG | 0.608352 | 1.4:-77929072 | None:intergenic |
| ATGAATGTGAATGAGAATGA+TGG | 0.610284 | 1.4:+77928661 | MS.gene061162:CDS |
| CACGTCTTCAAAGACGGCCA+CGG | 0.612914 | 1.4:-77929066 | None:intergenic |
| GGATAAGCACTCGACGTGGG+TGG | 0.617289 | 1.4:+77929524 | MS.gene061162:CDS |
| GATAAGCACTCGACGTGGGT+GGG | 0.619780 | 1.4:+77929525 | MS.gene061162:CDS |
| GGAAACTACACAAGAAGATG+AGG | 0.619840 | 1.4:+77929626 | MS.gene061162:CDS |
| CCATCCACATAGCAAAACTC+CGG | 0.620293 | 1.4:-77928851 | None:intergenic |
| ACGCCACAGGCAAAACCACA+GGG | 0.621109 | 1.4:-77929371 | None:intergenic |
| TACTGAAATTAATAAATCAA+GGG | 0.623472 | 1.4:+77929701 | MS.gene061162:CDS |
| GTGGCCGTCTTTGAAGACGT+GGG | 0.627250 | 1.4:+77929068 | MS.gene061162:CDS |
| ATGTAACAGTAACTCACTGT+TGG | 0.640519 | 1.4:-77928962 | None:intergenic |
| GCAATCAACAAGTAAACCGA+AGG | 0.642301 | 1.4:+77929593 | MS.gene061162:CDS |
| CCCATTATCAACAATTCCAG+CGG | 0.654894 | 1.4:-77929294 | None:intergenic |
| TGATTGGCATTCGTTCCCTG+TGG | 0.665059 | 1.4:+77929356 | MS.gene061162:CDS |
| TTGATTTGATGACAATGTGG+AGG | 0.666318 | 1.4:+77928899 | MS.gene061162:CDS |
| ATGGGATAAGCACTCGACGT+GGG | 0.666646 | 1.4:+77929521 | MS.gene061162:CDS |
| TATGGGATAAGCACTCGACG+TGG | 0.700984 | 1.4:+77929520 | MS.gene061162:CDS |
| AGCTTGATTTGATGACAATG+TGG | 0.707635 | 1.4:+77928896 | MS.gene061162:CDS |
| GTAACGCGGTAAGCGCACCC+GGG | 0.720177 | 1.4:-77928810 | None:intergenic |
| ACTGGTGAAGTACTGTAACG+CGG | 0.793914 | 1.4:-77928824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTGAAATTAATAAATCA+AGG | + | chr1.4:77929700-77929719 | MS.gene061162:CDS | 15.0% |
| !! | TACTGAAATTAATAAATCAA+GGG | + | chr1.4:77929701-77929720 | MS.gene061162:CDS | 15.0% |
| !!! | TATGATTAATTTGGTGATAT+GGG | + | chr1.4:77929503-77929522 | MS.gene061162:CDS | 20.0% |
| !!! | TTATGATTAATTTGGTGATA+TGG | + | chr1.4:77929502-77929521 | MS.gene061162:CDS | 20.0% |
| ! | AATTTCAGTATCACTAATGT+TGG | - | chr1.4:77929691-77929710 | None:intergenic | 25.0% |
| ! | GAAATTAATAAATCAAGGGA+AGG | + | chr1.4:77929705-77929724 | MS.gene061162:CDS | 25.0% |
| ! | GTTCATCAAATTTCAGTATA+TGG | + | chr1.4:77928712-77928731 | MS.gene061162:CDS | 25.0% |
| ! | TATAGTGAATAAGTTGTTGA+CGG | + | chr1.4:77929479-77929498 | MS.gene061162:CDS | 25.0% |
| ! | TGTGTTGTACAATAATATTG+AGG | + | chr1.4:77929257-77929276 | MS.gene061162:CDS | 25.0% |
| !!! | TGATTATCAGTTTACTTTTG+CGG | + | chr1.4:77929137-77929156 | MS.gene061162:CDS | 25.0% |
| !!! | TTTTGTTTACATAAAGCATG+TGG | + | chr1.4:77929203-77929222 | MS.gene061162:CDS | 25.0% |
| AAATTCTTCACGTTACTAGT+AGG | - | chr1.4:77928637-77928656 | None:intergenic | 30.0% | |
| AACGATTGAATTGAACACTT+GGG | + | chr1.4:77929230-77929249 | MS.gene061162:CDS | 30.0% | |
| AATTCTTCACGTTACTAGTA+GGG | - | chr1.4:77928636-77928655 | None:intergenic | 30.0% | |
| ATGAATGTGAATGAGAATGA+TGG | + | chr1.4:77928661-77928680 | MS.gene061162:CDS | 30.0% | |
| GCTGTCAATTATCAACAAAT+GGG | + | chr1.4:77928768-77928787 | MS.gene061162:CDS | 30.0% | |
| GTTGACGGTTATGATTAATT+TGG | + | chr1.4:77929494-77929513 | MS.gene061162:CDS | 30.0% | |
| TGCTGTCAATTATCAACAAA+TGG | + | chr1.4:77928767-77928786 | MS.gene061162:CDS | 30.0% | |
| !! | CACAATGAAAGTATCTACAT+TGG | - | chr1.4:77928989-77929008 | None:intergenic | 30.0% |
| !!! | TTTTGATTTGTATGCTAGGT+GGG | + | chr1.4:77929559-77929578 | MS.gene061162:CDS | 30.0% |
| ACGATTGAATTGAACACTTG+GGG | + | chr1.4:77929231-77929250 | MS.gene061162:CDS | 35.0% | |
| ATGTAACAGTAACTCACTGT+TGG | - | chr1.4:77928965-77928984 | None:intergenic | 35.0% | |
| CAACGATTGAATTGAACACT+TGG | + | chr1.4:77929229-77929248 | MS.gene061162:CDS | 35.0% | |
| TACTTTCATTGTGTTCCGAT+CGG | + | chr1.4:77928996-77929015 | MS.gene061162:CDS | 35.0% | |
| TGTCATGAAATTTCCTTACC+CGG | + | chr1.4:77928792-77928811 | MS.gene061162:CDS | 35.0% | |
| ! | AGCTTGATTTGATGACAATG+TGG | + | chr1.4:77928896-77928915 | MS.gene061162:CDS | 35.0% |
| ! | TTCCAATTTTCGTTGCTGTA+GGG | + | chr1.4:77929022-77929041 | MS.gene061162:CDS | 35.0% |
| ! | TTGATTTGATGACAATGTGG+AGG | + | chr1.4:77928899-77928918 | MS.gene061162:CDS | 35.0% |
| !! | TTTGATTTGTATGCTAGGTG+GGG | + | chr1.4:77929560-77929579 | MS.gene061162:CDS | 35.0% |
| !!! | CTTTTGATTTGTATGCTAGG+TGG | + | chr1.4:77929558-77929577 | MS.gene061162:CDS | 35.0% |
| !!! | GGACTTTTGATTTGTATGCT+AGG | + | chr1.4:77929555-77929574 | MS.gene061162:CDS | 35.0% |
| AGATCACTGATGAGTCTGAT+TGG | + | chr1.4:77929340-77929359 | MS.gene061162:CDS | 40.0% | |
| AGGTAAAAAATCACAGCAGC+CGG | - | chr1.4:77928931-77928950 | None:intergenic | 40.0% | |
| CCCATTATCAACAATTCCAG+CGG | - | chr1.4:77929297-77929316 | None:intergenic | 40.0% | |
| GCAACTGGATTTACTGTTCT+CGG | + | chr1.4:77929456-77929475 | MS.gene061162:CDS | 40.0% | |
| GCAATCAACAAGTAAACCGA+AGG | + | chr1.4:77929593-77929612 | MS.gene061162:CDS | 40.0% | |
| GGAAACTACACAAGAAGATG+AGG | + | chr1.4:77929626-77929645 | MS.gene061162:CDS | 40.0% | |
| GTCATGAAATTTCCTTACCC+GGG | + | chr1.4:77928793-77928812 | MS.gene061162:CDS | 40.0% | |
| ! | GTTCCAATTTTCGTTGCTGT+AGG | + | chr1.4:77929021-77929040 | MS.gene061162:CDS | 40.0% |
| ! | TACTTTTGCGGCTTACATGT+GGG | + | chr1.4:77929149-77929168 | MS.gene061162:CDS | 40.0% |
| ! | TCCAATTTTCGTTGCTGTAG+GGG | + | chr1.4:77929023-77929042 | MS.gene061162:CDS | 40.0% |
| ! | TCCGCTGGAATTGTTGATAA+TGG | + | chr1.4:77929293-77929312 | MS.gene061162:CDS | 40.0% |
| !! | AATGAGAATGATGGTGTTGC+TGG | + | chr1.4:77928670-77928689 | MS.gene061162:CDS | 40.0% |
| !! | CCGCTGGAATTGTTGATAAT+GGG | + | chr1.4:77929294-77929313 | MS.gene061162:CDS | 40.0% |
| !! | TTACTTTTGCGGCTTACATG+TGG | + | chr1.4:77929148-77929167 | MS.gene061162:CDS | 40.0% |
| CCATCCACATAGCAAAACTC+CGG | - | chr1.4:77928854-77928873 | None:intergenic | 45.0% | |
| CGAAAATTGGAACAGCCGAT+CGG | - | chr1.4:77929014-77929033 | None:intergenic | 45.0% | |
| TCCCCTACAGCAACGAAAAT+TGG | - | chr1.4:77929027-77929046 | None:intergenic | 45.0% | |
| TCGTTGGGAACTATATTCGC+TGG | + | chr1.4:77929093-77929112 | MS.gene061162:CDS | 45.0% | |
| ! | CACTGTTGGTAAACAGTGAC+AGG | - | chr1.4:77928951-77928970 | None:intergenic | 45.0% |
| ! | CTTTGGATTTTCGTGTCGCA+GGG | + | chr1.4:77929425-77929444 | MS.gene061162:CDS | 45.0% |
| ! | GACAATGTGGAGGTTTTTGC+CGG | + | chr1.4:77928909-77928928 | MS.gene061162:CDS | 45.0% |
| ! | TCTTTGGATTTTCGTGTCGC+AGG | + | chr1.4:77929424-77929443 | MS.gene061162:CDS | 45.0% |
| ! | TTTGCTATGTGGATGGCTCA+AGG | + | chr1.4:77928858-77928877 | MS.gene061162:CDS | 45.0% |
| !! | ACTGGTGAAGTACTGTAACG+CGG | - | chr1.4:77928827-77928846 | None:intergenic | 45.0% |
| !! | ATGATGGTGTTGCTGGAAAC+TGG | + | chr1.4:77928677-77928696 | MS.gene061162:CDS | 45.0% |
| !! | TCAGTATATGGTGTTGCTGC+TGG | + | chr1.4:77928724-77928743 | MS.gene061162:CDS | 45.0% |
| ATGGGATAAGCACTCGACGT+GGG | + | chr1.4:77929521-77929540 | MS.gene061162:CDS | 50.0% | |
| GAAGCCCACGTCTTCAAAGA+CGG | - | chr1.4:77929075-77929094 | None:intergenic | 50.0% | |
| GGTCTGGCGATCTCTTTCTT+TGG | + | chr1.4:77929408-77929427 | MS.gene061162:CDS | 50.0% | |
| GTTGTCGTGCTTGTTTGGTC+TGG | + | chr1.4:77929392-77929411 | MS.gene061162:CDS | 50.0% | |
| GTTTCCTGTATCGCAGCCTT+CGG | - | chr1.4:77929612-77929631 | None:intergenic | 50.0% | |
| TAAACCGAAGGCTGCGATAC+AGG | + | chr1.4:77929605-77929624 | MS.gene061162:CDS | 50.0% | |
| TATGGGATAAGCACTCGACG+TGG | + | chr1.4:77929520-77929539 | MS.gene061162:CDS | 50.0% | |
| TGATTGGCATTCGTTCCCTG+TGG | + | chr1.4:77929356-77929375 | MS.gene061162:CDS | 50.0% | |
| TTGAAGACGTGGGCTTCGTT+GGG | + | chr1.4:77929078-77929097 | MS.gene061162:CDS | 50.0% | |
| TTTGAAGACGTGGGCTTCGT+TGG | + | chr1.4:77929077-77929096 | MS.gene061162:CDS | 50.0% | |
| ! | GGGAGTCAGTGTTTCTGCAT+CGG | + | chr1.4:77929043-77929062 | MS.gene061162:CDS | 50.0% |
| ! | TTTTGCGGCTTACATGTGGG+CGG | + | chr1.4:77929152-77929171 | MS.gene061162:CDS | 50.0% |
| !! | CCGGAGTTTTGCTATGTGGA+TGG | + | chr1.4:77928851-77928870 | MS.gene061162:CDS | 50.0% |
| AACAAGCACGACAACGCCAC+AGG | - | chr1.4:77929387-77929406 | None:intergenic | 55.0% | |
| AACGCCACAGGCAAAACCAC+AGG | - | chr1.4:77929375-77929394 | None:intergenic | 55.0% | |
| ACGCCACAGGCAAAACCACA+GGG | - | chr1.4:77929374-77929393 | None:intergenic | 55.0% | |
| CACGTCTTCAAAGACGGCCA+CGG | - | chr1.4:77929069-77929088 | None:intergenic | 55.0% | |
| CAGTACTTCACCAGTGCTGC+CGG | + | chr1.4:77928832-77928851 | MS.gene061162:CDS | 55.0% | |
| GATAAGCACTCGACGTGGGT+GGG | + | chr1.4:77929525-77929544 | MS.gene061162:CDS | 55.0% | |
| GTGGCGTTGTCGTGCTTGTT+TGG | + | chr1.4:77929387-77929406 | MS.gene061162:CDS | 55.0% | |
| TAGCAAAACTCCGGCAGCAC+TGG | - | chr1.4:77928845-77928864 | None:intergenic | 55.0% | |
| ! | GTGGCCGTCTTTGAAGACGT+GGG | + | chr1.4:77929068-77929087 | MS.gene061162:CDS | 55.0% |
| !! | CGCAGGGCTATTTCTGCAAC+TGG | + | chr1.4:77929441-77929460 | MS.gene061162:CDS | 55.0% |
| !! | GCTGCCGGAGTTTTGCTATG+TGG | + | chr1.4:77928847-77928866 | MS.gene061162:CDS | 55.0% |
| !! | GTTCCCTGTGGTTTTGCCTG+TGG | + | chr1.4:77929368-77929387 | MS.gene061162:CDS | 55.0% |
| !!! | GGCTCTTCTGCTTTTTCCGC+TGG | + | chr1.4:77929278-77929297 | MS.gene061162:CDS | 55.0% |
| CATGTGGGCGGTGGCGTATT+TGG | + | chr1.4:77929164-77929183 | MS.gene061162:CDS | 60.0% | |
| GGATAAGCACTCGACGTGGG+TGG | + | chr1.4:77929524-77929543 | MS.gene061162:CDS | 60.0% | |
| TCGACGTGGGTGGGTACAGT+GGG | + | chr1.4:77929534-77929553 | MS.gene061162:CDS | 60.0% | |
| TGTAACGCGGTAAGCGCACC+CGG | - | chr1.4:77928814-77928833 | None:intergenic | 60.0% | |
| ! | CAGTGTTTCTGCATCGGCCG+TGG | + | chr1.4:77929049-77929068 | MS.gene061162:CDS | 60.0% |
| ! | CGTGGCCGTCTTTGAAGACG+TGG | + | chr1.4:77929067-77929086 | MS.gene061162:CDS | 60.0% |
| CTCGACGTGGGTGGGTACAG+TGG | + | chr1.4:77929533-77929552 | MS.gene061162:CDS | 65.0% | |
| GTAACGCGGTAAGCGCACCC+GGG | - | chr1.4:77928813-77928832 | None:intergenic | 65.0% | |
| TGCGGCTTACATGTGGGCGG+TGG | + | chr1.4:77929155-77929174 | MS.gene061162:CDS | 65.0% | |
| GCGGTAAGCGCACCCGGGTA+AGG | - | chr1.4:77928808-77928827 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 77928610 | 77929734 | 77928610 | ID=MS.gene061162 |
| chr1.4 | mRNA | 77928610 | 77929734 | 77928610 | ID=MS.gene061162.t1;Parent=MS.gene061162 |
| chr1.4 | exon | 77928610 | 77929734 | 77928610 | ID=MS.gene061162.t1.exon1;Parent=MS.gene061162.t1 |
| chr1.4 | CDS | 77928610 | 77929734 | 77928610 | ID=cds.MS.gene061162.t1;Parent=MS.gene061162.t1 |
| Gene Sequence |
| Protein sequence |
