Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061294.t1 | XP_013455695.1 | 97.3 | 443 | 9 | 1 | 1 | 440 | 1 | 443 | 2.40E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061294.t1 | Q93W32 | 73.0 | 403 | 98 | 4 | 43 | 434 | 43 | 445 | 4.1e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061294.t1 | A0A072UJX8 | 97.3 | 443 | 9 | 1 | 1 | 440 | 1 | 443 | 1.8e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene061294 | 0.813304 | 2.74E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene061294 | 0.828446 | 8.95E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061294.t1 | MTR_4g050170 | 96.622 | 444 | 12 | 2 | 1 | 441 | 1 | 444 | 0.0 | 877 |
| MS.gene061294.t1 | MTR_7g106760 | 75.610 | 410 | 92 | 6 | 34 | 441 | 27 | 430 | 0.0 | 548 |
| MS.gene061294.t1 | MTR_2g087810 | 72.059 | 408 | 102 | 5 | 36 | 441 | 26 | 423 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061294.t1 | AT5G06390 | 69.451 | 455 | 117 | 6 | 3 | 442 | 1 | 448 | 0.0 | 572 |
| MS.gene061294.t1 | AT2G35860 | 75.490 | 408 | 87 | 4 | 38 | 437 | 33 | 435 | 0.0 | 569 |
| MS.gene061294.t1 | AT3G52370 | 74.631 | 406 | 87 | 4 | 38 | 436 | 82 | 478 | 0.0 | 554 |
| MS.gene061294.t1 | AT3G52370 | 74.631 | 406 | 87 | 4 | 38 | 436 | 29 | 425 | 0.0 | 551 |
| MS.gene061294.t1 | AT3G11700 | 69.933 | 449 | 118 | 6 | 3 | 436 | 1 | 447 | 0.0 | 551 |
| MS.gene061294.t1 | AT5G05650 | 58.696 | 92 | 34 | 1 | 322 | 413 | 2 | 89 | 3.95e-32 | 119 |
Find 118 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGGTTTACCCTTCCGTTCT+TGG | 0.196546 | 4.2:+51535019 | None:intergenic |
| TATAATGCTGTTAGAAGATT+TGG | 0.205388 | 4.2:-51535246 | MS.gene061294:CDS |
| ATCCAGACATTGATACATTA+TGG | 0.217301 | 4.2:-51535483 | MS.gene061294:CDS |
| GCCATGGATTGCGGCATCTA+TGG | 0.291024 | 4.2:-51536471 | MS.gene061294:CDS |
| GTTTGACCCGGATATTTATA+CGG | 0.312153 | 4.2:-51535124 | MS.gene061294:CDS |
| TCGCAACAATGGTTGGTTAA+TGG | 0.312344 | 4.2:-51536021 | MS.gene061294:CDS |
| TAATGAGATGGCGGACATTC+TGG | 0.338457 | 4.2:-51535454 | MS.gene061294:CDS |
| GCTGATGGGTCGGTTAAATT+CGG | 0.358905 | 4.2:-51535171 | MS.gene061294:CDS |
| TTAGCCATAGCTTCATCATT+TGG | 0.365438 | 4.2:+51535360 | None:intergenic |
| TGAGCATCAGTTATTGATAC+AGG | 0.379334 | 4.2:-51536055 | MS.gene061294:CDS |
| CTCCCATCCGTATAAATATC+CGG | 0.383323 | 4.2:+51535117 | None:intergenic |
| CAACGCACCTCTTCTTTGCT+TGG | 0.384525 | 4.2:+51534984 | None:intergenic |
| CCATTACCTGGTGCTGGCGC+CGG | 0.386857 | 4.2:+51535736 | None:intergenic |
| AAAAGAAGAGGTTGTTGATA+AGG | 0.389174 | 4.2:-51535049 | MS.gene061294:CDS |
| TCAACCTCCGGTGCACCTTC+CGG | 0.389913 | 4.2:+51535862 | None:intergenic |
| GGGTTTACCCTTCCGTTCTT+GGG | 0.397284 | 4.2:+51535020 | None:intergenic |
| GACCCCACCATCATTTCAAC+GGG | 0.406272 | 4.2:-51535527 | MS.gene061294:CDS |
| ATTTCTGTGCAAGGGATTGA+TGG | 0.408807 | 4.2:-51535093 | MS.gene061294:CDS |
| TGATAGTACATAATTTGTTC+CGG | 0.408846 | 4.2:+51535303 | None:intergenic |
| GTGAACCCGGTTCACTCAAC+TGG | 0.414386 | 4.2:+51535325 | None:intergenic |
| TCTTCAGCATCAACCTTATG+AGG | 0.417041 | 4.2:+51535195 | None:intergenic |
| TTCATCTTCTTCTTCTTCAA+CGG | 0.419684 | 4.2:-51536388 | MS.gene061294:CDS |
| TTCTATTGCTGCAATTAAAC+CGG | 0.421591 | 4.2:-51535881 | MS.gene061294:CDS |
| ATTCGGGCATGGTGATGGTT+CGG | 0.423960 | 4.2:-51535154 | MS.gene061294:CDS |
| ATAATGCTGTTAGAAGATTT+GGG | 0.425540 | 4.2:-51535245 | MS.gene061294:CDS |
| ACAGATCCATTGATTCTAGT+TGG | 0.427215 | 4.2:+51536120 | None:intergenic |
| AAACTCAAACTCAATCTTAG+TGG | 0.429019 | 4.2:-51536358 | MS.gene061294:CDS |
| AACGGACCAGTTGAGTGAAC+CGG | 0.429059 | 4.2:-51535331 | MS.gene061294:CDS |
| TGCTTGGCCACAACCTTAGC+GGG | 0.430153 | 4.2:+51535000 | None:intergenic |
| TCGGGTCGACCCGCCTTTGT+TGG | 0.439908 | 4.2:+51536095 | None:intergenic |
| CTCCATAATGTATCAATGTC+TGG | 0.445019 | 4.2:+51535481 | None:intergenic |
| AGACCTGATGGTGTTATTCA+TGG | 0.447511 | 4.2:-51535967 | MS.gene061294:CDS |
| CTCTCTTCAGTTTGATACTC+AGG | 0.448810 | 4.2:+51535273 | None:intergenic |
| CTAGCACCGGCGCCAGCACC+AGG | 0.449468 | 4.2:-51535742 | MS.gene061294:intron |
| CAAGATCTCGTTCAAGAGCT+TGG | 0.451144 | 4.2:+51536220 | None:intergenic |
| CCGCCACCACCGCAGAAGCC+TGG | 0.455778 | 4.2:-51535814 | MS.gene061294:CDS |
| GTTAAATTCGGGCATGGTGA+TGG | 0.463040 | 4.2:-51535159 | MS.gene061294:CDS |
| CCAGGCTTCTGCGGTGGTGG+CGG | 0.466703 | 4.2:+51535814 | None:intergenic |
| ATTATCCCAACTAGAATCAA+TGG | 0.468002 | 4.2:-51536126 | MS.gene061294:CDS |
| GATGAGTAGGTTAGTATCAG+AGG | 0.468619 | 4.2:-51535406 | MS.gene061294:CDS |
| CAGATCCATTGATTCTAGTT+GGG | 0.469398 | 4.2:+51536121 | None:intergenic |
| GAACCAGGCTTCTGCGGTGG+TGG | 0.473800 | 4.2:+51535811 | None:intergenic |
| GGAAGAGCAGGCGGAGAACC+AGG | 0.481833 | 4.2:+51535796 | None:intergenic |
| CTGATGGGTCGGTTAAATTC+GGG | 0.490096 | 4.2:-51535170 | MS.gene061294:CDS |
| ATTCCATGAATAACACCATC+AGG | 0.490128 | 4.2:+51535964 | None:intergenic |
| TACACTGAGATTGCCTCATA+AGG | 0.490412 | 4.2:-51535208 | MS.gene061294:CDS |
| TTTCTGTGCAAGGGATTGAT+GGG | 0.500163 | 4.2:-51535092 | MS.gene061294:CDS |
| TCCTGGACCTTCTCTAGCAC+CGG | 0.502237 | 4.2:-51535755 | MS.gene061294:CDS |
| AAGCTTCCATTACCTGGTGC+TGG | 0.504787 | 4.2:+51535730 | None:intergenic |
| TTGAAAGGCTTCTTATTCCA+AGG | 0.507843 | 4.2:-51535942 | MS.gene061294:CDS |
| GACCCGGATATTTATACGGA+TGG | 0.509583 | 4.2:-51535120 | MS.gene061294:CDS |
| TAAGATTCCGTGGCTCTAAG+AGG | 0.512177 | 4.2:+51536178 | None:intergenic |
| AAACGACAATGTTCTATGTC+GGG | 0.512333 | 4.2:+51536077 | None:intergenic |
| GGGTAAACCCGCTAAGGTTG+TGG | 0.515104 | 4.2:-51535007 | MS.gene061294:CDS |
| GTGTTATTCATGGAATTGAA+AGG | 0.521049 | 4.2:-51535957 | MS.gene061294:CDS |
| ACCATAGATGCCGCAATCCA+TGG | 0.521880 | 4.2:+51536470 | None:intergenic |
| AGCACCAAATGATGAAGCTA+TGG | 0.522967 | 4.2:-51535364 | MS.gene061294:CDS |
| AAATGATGGTGGGGTCCACC+AGG | 0.523892 | 4.2:+51535534 | None:intergenic |
| ATAATTTGTTCCGGTGAACC+CGG | 0.528069 | 4.2:+51535312 | None:intergenic |
| TTGCTTGGCCACAACCTTAG+CGG | 0.531460 | 4.2:+51534999 | None:intergenic |
| ATGAGTAGGTTAGTATCAGA+GGG | 0.533753 | 4.2:-51535405 | MS.gene061294:CDS |
| GTGCCTCCCCGTTGAAATGA+TGG | 0.534564 | 4.2:+51535520 | None:intergenic |
| ACCCGGATATTTATACGGAT+GGG | 0.536086 | 4.2:-51535119 | MS.gene061294:CDS |
| GTTGAGTGAACCGGGTTCAC+CGG | 0.536161 | 4.2:-51535322 | MS.gene061294:CDS |
| GGCTGTGACCCAAGAACGGA+AGG | 0.537283 | 4.2:-51535028 | MS.gene061294:CDS |
| TCCCATCCGTATAAATATCC+GGG | 0.540655 | 4.2:+51535118 | None:intergenic |
| AAGTCATCTTGAACAGACCT+TGG | 0.542381 | 4.2:+51535925 | None:intergenic |
| TGAAACATCGCAACAATGGT+TGG | 0.551947 | 4.2:-51536028 | MS.gene061294:CDS |
| GCTGGCGCCGGTGCTAGAGA+AGG | 0.552375 | 4.2:+51535748 | None:intergenic |
| CTCCCCGTTGAAATGATGGT+GGG | 0.553409 | 4.2:+51535524 | None:intergenic |
| TCATTTCAACGGGGAGGCAC+AGG | 0.554998 | 4.2:-51535517 | MS.gene061294:CDS |
| TGAGTCCTCGGATCAACCTC+CGG | 0.557499 | 4.2:+51535850 | None:intergenic |
| CAAACGACAATGTTCTATGT+CGG | 0.557709 | 4.2:+51536076 | None:intergenic |
| TTAGAAGATTTGGGAAGGTG+AGG | 0.560046 | 4.2:-51535236 | MS.gene061294:CDS |
| TTCGGCTTACTTGTTTGACC+CGG | 0.563089 | 4.2:-51535136 | MS.gene061294:CDS |
| TTCTGTGCAAGGGATTGATG+GGG | 0.568281 | 4.2:-51535091 | MS.gene061294:CDS |
| GCCGGTGCTAGAGAAGGTCC+AGG | 0.570760 | 4.2:+51535754 | None:intergenic |
| GGCGGAGAACCAGGCTTCTG+CGG | 0.570840 | 4.2:+51535805 | None:intergenic |
| GGACCCCACCATCATTTCAA+CGG | 0.574499 | 4.2:-51535528 | MS.gene061294:CDS |
| ACGGACCAGTTGAGTGAACC+GGG | 0.578352 | 4.2:-51535330 | MS.gene061294:CDS |
| AATTAAACCGGAAGGTGCAC+CGG | 0.579641 | 4.2:-51535869 | MS.gene061294:CDS |
| ATGGGAGGATTTCTGTGCAA+GGG | 0.579676 | 4.2:-51535101 | MS.gene061294:CDS |
| TGCTGTTAGAAGATTTGGGA+AGG | 0.581041 | 4.2:-51535241 | MS.gene061294:CDS |
| CAAATGAAACATCGCAACAA+TGG | 0.583491 | 4.2:-51536032 | MS.gene061294:CDS |
| ACGGAAGGGTAAACCCGCTA+AGG | 0.584103 | 4.2:-51535013 | MS.gene061294:CDS |
| TGAAGAGATTTAAGATTCCG+TGG | 0.590229 | 4.2:+51536168 | None:intergenic |
| GAACTTAACGTCGTTAGCGA+CGG | 0.595166 | 4.2:-51535430 | MS.gene061294:CDS |
| GATCTGTATCCAACAAAGGC+GGG | 0.596886 | 4.2:-51536104 | MS.gene061294:CDS |
| AAACTTTCCTCTTAGAGCCA+CGG | 0.597093 | 4.2:-51536185 | MS.gene061294:CDS |
| CCTCCCCGTTGAAATGATGG+TGG | 0.597615 | 4.2:+51535523 | None:intergenic |
| TTATGGAGGTTATAATGAGA+TGG | 0.600214 | 4.2:-51535466 | MS.gene061294:CDS |
| AGGTTGATCCGAGGACTCAT+CGG | 0.600481 | 4.2:-51535846 | MS.gene061294:CDS |
| GGGTCGGTTAAATTCGGGCA+TGG | 0.604050 | 4.2:-51535165 | MS.gene061294:CDS |
| GGAGAACCAGGCTTCTGCGG+TGG | 0.605717 | 4.2:+51535808 | None:intergenic |
| ATTGCTGCAATTAAACCGGA+AGG | 0.614415 | 4.2:-51535877 | MS.gene061294:CDS |
| CGTTAGCGACGGAGATGAGT+AGG | 0.618054 | 4.2:-51535419 | MS.gene061294:CDS |
| GATGGGAGGATTTCTGTGCA+AGG | 0.618422 | 4.2:-51535102 | MS.gene061294:CDS |
| CGGATATTTATACGGATGGG+AGG | 0.627609 | 4.2:-51535116 | MS.gene061294:CDS |
| TCCCCGTTGAAATGATGGTG+GGG | 0.631232 | 4.2:+51535525 | None:intergenic |
| ATAAGGCTGTGACCCAAGAA+CGG | 0.632729 | 4.2:-51535032 | MS.gene061294:CDS |
| CAAACACTAGAAGACACTGT+TGG | 0.637288 | 4.2:-51536276 | MS.gene061294:CDS |
| GTTGATGCTGAAGAAGCTGA+TGG | 0.639771 | 4.2:-51535186 | MS.gene061294:CDS |
| AAGATGACTTTAACCGTCGT+AGG | 0.641102 | 4.2:-51535912 | MS.gene061294:CDS |
| GGATCTGTATCCAACAAAGG+CGG | 0.643730 | 4.2:-51536105 | MS.gene061294:CDS |
| TAGAAACAAGACTCCTACGA+CGG | 0.647653 | 4.2:+51535899 | None:intergenic |
| AATGGATCTGTATCCAACAA+AGG | 0.662344 | 4.2:-51536108 | MS.gene061294:CDS |
| AATGATGTGATGAGACCTGA+TGG | 0.663714 | 4.2:-51535979 | MS.gene061294:CDS |
| TGCTGAAGAAGCTGATGGGT+CGG | 0.664468 | 4.2:-51535181 | MS.gene061294:CDS |
| TAAACCGGAAGGTGCACCGG+AGG | 0.666629 | 4.2:-51535866 | MS.gene061294:CDS |
| GTTGTGGCCAAGCAAAGAAG+AGG | 0.666635 | 4.2:-51534991 | MS.gene061294:intron |
| CAGACATTGATACATTATGG+AGG | 0.667049 | 4.2:-51535480 | MS.gene061294:CDS |
| TTGATGCTGAAGAAGCTGAT+GGG | 0.675714 | 4.2:-51535185 | MS.gene061294:CDS |
| CCACCATCATTTCAACGGGG+AGG | 0.679312 | 4.2:-51535523 | MS.gene061294:CDS |
| TGGAGGTTATAATGAGATGG+CGG | 0.692914 | 4.2:-51535463 | MS.gene061294:CDS |
| AGCTATGGCTAAGTTAACAA+CGG | 0.711535 | 4.2:-51535349 | MS.gene061294:CDS |
| GTGCACCGGAGGTTGATCCG+AGG | 0.717893 | 4.2:-51535855 | MS.gene061294:CDS |
| GCTGTGACCCAAGAACGGAA+GGG | 0.741038 | 4.2:-51535027 | MS.gene061294:CDS |
| ACCCCACCATCATTTCAACG+GGG | 0.810320 | 4.2:-51535526 | MS.gene061294:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATATAATCAGATGTAT+TGG | + | chr4.2:51535602-51535621 | None:intergenic | 20.0% |
| !! | TTTAAGTCAAGAAGAAAATA+GGG | - | chr4.2:51536348-51536367 | MS.gene061294:CDS | 20.0% |
| !!! | ACTTTTTCCTTTATTTTGTT+TGG | - | chr4.2:51536319-51536338 | MS.gene061294:CDS | 20.0% |
| !!! | CTTTTTCCTTTATTTTGTTT+GGG | - | chr4.2:51536320-51536339 | MS.gene061294:CDS | 20.0% |
| !!! | TTTTAAGTCAAGAAGAAAAT+AGG | - | chr4.2:51536347-51536366 | MS.gene061294:CDS | 20.0% |
| ! | ATAATGCTGTTAGAAGATTT+GGG | - | chr4.2:51536012-51536031 | MS.gene061294:CDS | 25.0% |
| ! | TATAATGCTGTTAGAAGATT+TGG | - | chr4.2:51536011-51536030 | MS.gene061294:CDS | 25.0% |
| ! | TGATTATGATGTGTTCAATT+TGG | - | chr4.2:51536387-51536406 | MS.gene061294:CDS | 25.0% |
| !! | AATAGGGAAAAAGTACAAAA+AGG | - | chr4.2:51536364-51536383 | MS.gene061294:CDS | 25.0% |
| !!! | AAGAGGAAAGTTTTGAAATT+CGG | + | chr4.2:51535065-51535084 | None:intergenic | 25.0% |
| !!! | TGATAGTACATAATTTGTTC+CGG | + | chr4.2:51535957-51535976 | None:intergenic | 25.0% |
| !!! | TTGTAACTAACTTGTTTTTC+AGG | - | chr4.2:51535699-51535718 | MS.gene061294:intron | 25.0% |
| AAAAGAAGAGGTTGTTGATA+AGG | - | chr4.2:51536208-51536227 | MS.gene061294:CDS | 30.0% | |
| AAACTCAAACTCAATCTTAG+TGG | - | chr4.2:51534899-51534918 | MS.gene061294:intron | 30.0% | |
| AACACACCCAAACAAAATAA+AGG | + | chr4.2:51536329-51536348 | None:intergenic | 30.0% | |
| ATCCAGACATTGATACATTA+TGG | - | chr4.2:51535774-51535793 | MS.gene061294:CDS | 30.0% | |
| ATTATCCCAACTAGAATCAA+TGG | - | chr4.2:51535131-51535150 | MS.gene061294:CDS | 30.0% | |
| TATGATGTGTTCAATTTGGT+TGG | - | chr4.2:51536391-51536410 | MS.gene061294:CDS | 30.0% | |
| TTATGGAGGTTATAATGAGA+TGG | - | chr4.2:51535791-51535810 | MS.gene061294:CDS | 30.0% | |
| TTCATCTTCTTCTTCTTCAA+CGG | - | chr4.2:51534869-51534888 | MS.gene061294:intron | 30.0% | |
| TTCTATTGCTGCAATTAAAC+CGG | - | chr4.2:51535376-51535395 | MS.gene061294:CDS | 30.0% | |
| ! | AACTTTATGTGCTATGCTTT+TGG | - | chr4.2:51536435-51536454 | MS.gene061294:CDS | 30.0% |
| ! | GTGTTATTCATGGAATTGAA+AGG | - | chr4.2:51535300-51535319 | MS.gene061294:CDS | 30.0% |
| !!! | AGAGGAAAGTTTTGAAATTC+GGG | + | chr4.2:51535064-51535083 | None:intergenic | 30.0% |
| !!! | TCTTCCTATTTTTGATGCAT+TGG | - | chr4.2:51535478-51535497 | MS.gene061294:CDS | 30.0% |
| AAACGACAATGTTCTATGTC+GGG | + | chr4.2:51535183-51535202 | None:intergenic | 35.0% | |
| AATGGATCTGTATCCAACAA+AGG | - | chr4.2:51535149-51535168 | MS.gene061294:CDS | 35.0% | |
| AGCTATGGCTAAGTTAACAA+CGG | - | chr4.2:51535908-51535927 | MS.gene061294:CDS | 35.0% | |
| ATGAGTAGGTTAGTATCAGA+GGG | - | chr4.2:51535852-51535871 | MS.gene061294:CDS | 35.0% | |
| ATTCCATGAATAACACCATC+AGG | + | chr4.2:51535296-51535315 | None:intergenic | 35.0% | |
| CAAACGACAATGTTCTATGT+CGG | + | chr4.2:51535184-51535203 | None:intergenic | 35.0% | |
| CAAATGAAACATCGCAACAA+TGG | - | chr4.2:51535225-51535244 | MS.gene061294:CDS | 35.0% | |
| CAGACATTGATACATTATGG+AGG | - | chr4.2:51535777-51535796 | MS.gene061294:CDS | 35.0% | |
| CTCCATAATGTATCAATGTC+TGG | + | chr4.2:51535779-51535798 | None:intergenic | 35.0% | |
| GTTAAAAAGCTTCCATTACC+TGG | + | chr4.2:51535536-51535555 | None:intergenic | 35.0% | |
| GTTTGACCCGGATATTTATA+CGG | - | chr4.2:51536133-51536152 | MS.gene061294:CDS | 35.0% | |
| TCCACATGAAGAAAAAGAAG+AGG | - | chr4.2:51536196-51536215 | MS.gene061294:CDS | 35.0% | |
| TGAGCATCAGTTATTGATAC+AGG | - | chr4.2:51535202-51535221 | MS.gene061294:CDS | 35.0% | |
| TTAGCCATAGCTTCATCATT+TGG | + | chr4.2:51535900-51535919 | None:intergenic | 35.0% | |
| TTGAAAGGCTTCTTATTCCA+AGG | - | chr4.2:51535315-51535334 | MS.gene061294:CDS | 35.0% | |
| ! | ACCTCTTCTTTTTCTTCATG+TGG | + | chr4.2:51536200-51536219 | None:intergenic | 35.0% |
| ! | TAATCAGATGTATTGGTGTC+TGG | + | chr4.2:51535595-51535614 | None:intergenic | 35.0% |
| ! | TGAAGAGATTTAAGATTCCG+TGG | + | chr4.2:51535092-51535111 | None:intergenic | 35.0% |
| !! | ACAGATCCATTGATTCTAGT+TGG | + | chr4.2:51535140-51535159 | None:intergenic | 35.0% |
| !! | CAGATCCATTGATTCTAGTT+GGG | + | chr4.2:51535139-51535158 | None:intergenic | 35.0% |
| AAACTTTCCTCTTAGAGCCA+CGG | - | chr4.2:51535072-51535091 | MS.gene061294:CDS | 40.0% | |
| AAGATGACTTTAACCGTCGT+AGG | - | chr4.2:51535345-51535364 | MS.gene061294:CDS | 40.0% | |
| AAGTCATCTTGAACAGACCT+TGG | + | chr4.2:51535335-51535354 | None:intergenic | 40.0% | |
| AATGATGTGATGAGACCTGA+TGG | - | chr4.2:51535278-51535297 | MS.gene061294:CDS | 40.0% | |
| ACCCGGATATTTATACGGAT+GGG | - | chr4.2:51536138-51536157 | MS.gene061294:CDS | 40.0% | |
| AGAAGAAGAAGAAGAACGTG+CGG | + | chr4.2:51534830-51534849 | None:intergenic | 40.0% | |
| AGCACCAAATGATGAAGCTA+TGG | - | chr4.2:51535893-51535912 | MS.gene061294:CDS | 40.0% | |
| ATTGCTGCAATTAAACCGGA+AGG | - | chr4.2:51535380-51535399 | MS.gene061294:CDS | 40.0% | |
| ATTTCTGTGCAAGGGATTGA+TGG | - | chr4.2:51536164-51536183 | MS.gene061294:CDS | 40.0% | |
| CAAACACTAGAAGACACTGT+TGG | - | chr4.2:51534981-51535000 | MS.gene061294:intron | 40.0% | |
| CATGTCAATTGTGTAGTGTC+TGG | - | chr4.2:51535654-51535673 | MS.gene061294:intron | 40.0% | |
| CTCCCATCCGTATAAATATC+CGG | + | chr4.2:51536143-51536162 | None:intergenic | 40.0% | |
| CTCTCTTCAGTTTGATACTC+AGG | + | chr4.2:51535987-51536006 | None:intergenic | 40.0% | |
| GATGAGTAGGTTAGTATCAG+AGG | - | chr4.2:51535851-51535870 | MS.gene061294:CDS | 40.0% | |
| GCATCAAAAATAGGAAGAGC+AGG | + | chr4.2:51535476-51535495 | None:intergenic | 40.0% | |
| GGAGCCAATGCATCAAAAAT+AGG | + | chr4.2:51535485-51535504 | None:intergenic | 40.0% | |
| TACACTGAGATTGCCTCATA+AGG | - | chr4.2:51536049-51536068 | MS.gene061294:CDS | 40.0% | |
| TAGAAACAAGACTCCTACGA+CGG | + | chr4.2:51535361-51535380 | None:intergenic | 40.0% | |
| TCAAAAATAGGAAGAGCAGG+CGG | + | chr4.2:51535473-51535492 | None:intergenic | 40.0% | |
| TCCCATCCGTATAAATATCC+GGG | + | chr4.2:51536142-51536161 | None:intergenic | 40.0% | |
| TCTTCAGCATCAACCTTATG+AGG | + | chr4.2:51536065-51536084 | None:intergenic | 40.0% | |
| TGAAACATCGCAACAATGGT+TGG | - | chr4.2:51535229-51535248 | MS.gene061294:CDS | 40.0% | |
| TGCTGTTAGAAGATTTGGGA+AGG | - | chr4.2:51536016-51536035 | MS.gene061294:CDS | 40.0% | |
| TGGAGGTTATAATGAGATGG+CGG | - | chr4.2:51535794-51535813 | MS.gene061294:CDS | 40.0% | |
| TTAGAAGATTTGGGAAGGTG+AGG | - | chr4.2:51536021-51536040 | MS.gene061294:CDS | 40.0% | |
| TTGATGCTGAAGAAGCTGAT+GGG | - | chr4.2:51536072-51536091 | MS.gene061294:CDS | 40.0% | |
| TTTCTGTGCAAGGGATTGAT+GGG | - | chr4.2:51536165-51536184 | MS.gene061294:CDS | 40.0% | |
| ! | ACAAATTAGTTTCGAGCACC+CGG | + | chr4.2:51535683-51535702 | None:intergenic | 40.0% |
| ! | GCTTTTGGATGTGATTCTTG+TGG | - | chr4.2:51536450-51536469 | MS.gene061294:CDS | 40.0% |
| ! | TCGCAACAATGGTTGGTTAA+TGG | - | chr4.2:51535236-51535255 | MS.gene061294:CDS | 40.0% |
| !! | AGACCTGATGGTGTTATTCA+TGG | - | chr4.2:51535290-51535309 | MS.gene061294:CDS | 40.0% |
| !! | ATAATTTGTTCCGGTGAACC+CGG | + | chr4.2:51535948-51535967 | None:intergenic | 40.0% |
| !! | TGTGGTGTTTTGTTGAAGCT+TGG | - | chr4.2:51536468-51536487 | MS.gene061294:CDS | 40.0% |
| !! | TTTTTCAACCGATGAGTCCT+CGG | + | chr4.2:51535422-51535441 | None:intergenic | 40.0% |
| !!! | ATTTTTGATGCATTGGCTCC+TGG | - | chr4.2:51535485-51535504 | MS.gene061294:CDS | 40.0% |
| !!! | CGTTCAAGAGCTTGGTTTTT+TGG | + | chr4.2:51535032-51535051 | None:intergenic | 40.0% |
| !!! | CTAACTTGTTTTTCAGGACC+TGG | - | chr4.2:51535705-51535724 | MS.gene061294:intron | 40.0% |
| ATAAGGCTGTGACCCAAGAA+CGG | - | chr4.2:51536225-51536244 | MS.gene061294:CDS | 45.0% | |
| ATGGGAGGATTTCTGTGCAA+GGG | - | chr4.2:51536156-51536175 | MS.gene061294:CDS | 45.0% | |
| ATTGTGTAGTGTCTGGTGTC+CGG | - | chr4.2:51535661-51535680 | MS.gene061294:intron | 45.0% | |
| CAAGATCTCGTTCAAGAGCT+TGG | + | chr4.2:51535040-51535059 | None:intergenic | 45.0% | |
| CGGATATTTATACGGATGGG+AGG | - | chr4.2:51536141-51536160 | MS.gene061294:CDS | 45.0% | |
| GAACTTAACGTCGTTAGCGA+CGG | - | chr4.2:51535827-51535846 | MS.gene061294:CDS | 45.0% | |
| GACCCGGATATTTATACGGA+TGG | - | chr4.2:51536137-51536156 | MS.gene061294:CDS | 45.0% | |
| GATCTGTATCCAACAAAGGC+GGG | - | chr4.2:51535153-51535172 | MS.gene061294:CDS | 45.0% | |
| GGATCTGTATCCAACAAAGG+CGG | - | chr4.2:51535152-51535171 | MS.gene061294:CDS | 45.0% | |
| GTTAAATTCGGGCATGGTGA+TGG | - | chr4.2:51536098-51536117 | MS.gene061294:CDS | 45.0% | |
| GTTGATGCTGAAGAAGCTGA+TGG | - | chr4.2:51536071-51536090 | MS.gene061294:CDS | 45.0% | |
| TTCGGCTTACTTGTTTGACC+CGG | - | chr4.2:51536121-51536140 | MS.gene061294:CDS | 45.0% | |
| TTCTGTGCAAGGGATTGATG+GGG | - | chr4.2:51536166-51536185 | MS.gene061294:CDS | 45.0% | |
| ! | AATTAAACCGGAAGGTGCAC+CGG | - | chr4.2:51535388-51535407 | MS.gene061294:CDS | 45.0% |
| ! | ACGTCTTCCATCAGAAGTGT+CGG | + | chr4.2:51535564-51535583 | None:intergenic | 45.0% |
| ! | CTGATGGGTCGGTTAAATTC+GGG | - | chr4.2:51536087-51536106 | MS.gene061294:CDS | 45.0% |
| ! | GCTGATGGGTCGGTTAAATT+CGG | - | chr4.2:51536086-51536105 | MS.gene061294:CDS | 45.0% |
| !! | GGTGTTTTGTTGAAGCTTGG+AGG | - | chr4.2:51536471-51536490 | MS.gene061294:CDS | 45.0% |
| !! | TAAGATTCCGTGGCTCTAAG+AGG | + | chr4.2:51535082-51535101 | None:intergenic | 45.0% |
| !! | TAATGAGATGGCGGACATTC+TGG | - | chr4.2:51535803-51535822 | MS.gene061294:CDS | 45.0% |
| !!! | ACTTGTTTTTCAGGACCTGG+TGG | - | chr4.2:51535708-51535727 | MS.gene061294:intron | 45.0% |
| AACGGACCAGTTGAGTGAAC+CGG | - | chr4.2:51535926-51535945 | MS.gene061294:CDS | 50.0% | |
| AAGCTTCCATTACCTGGTGC+TGG | + | chr4.2:51535530-51535549 | None:intergenic | 50.0% | |
| ACACTGACCGACACTTCTGA+TGG | - | chr4.2:51535554-51535573 | MS.gene061294:intron | 50.0% | |
| ACCATAGATGCCGCAATCCA+TGG | + | chr4.2:51534790-51534809 | None:intergenic | 50.0% | |
| ACCCCACCATCATTTCAACG+GGG | - | chr4.2:51535731-51535750 | MS.gene061294:intron | 50.0% | |
| CAACGCACCTCTTCTTTGCT+TGG | + | chr4.2:51536276-51536295 | None:intergenic | 50.0% | |
| CTCCCCGTTGAAATGATGGT+GGG | + | chr4.2:51535736-51535755 | None:intergenic | 50.0% | |
| CTTCTGATGGAAGACGTGTC+TGG | - | chr4.2:51535567-51535586 | MS.gene061294:intron | 50.0% | |
| GACCCCACCATCATTTCAAC+GGG | - | chr4.2:51535730-51535749 | MS.gene061294:intron | 50.0% | |
| GATGGGAGGATTTCTGTGCA+AGG | - | chr4.2:51536155-51536174 | MS.gene061294:CDS | 50.0% | |
| GGACCCCACCATCATTTCAA+CGG | - | chr4.2:51535729-51535748 | MS.gene061294:intron | 50.0% | |
| GGGTTTACCCTTCCGTTCTT+GGG | + | chr4.2:51536240-51536259 | None:intergenic | 50.0% | |
| GTTGTGGCCAAGCAAAGAAG+AGG | - | chr4.2:51536266-51536285 | MS.gene061294:CDS | 50.0% | |
| TTGCTTGGCCACAACCTTAG+CGG | + | chr4.2:51536261-51536280 | None:intergenic | 50.0% | |
| TTGTGTAGTGTCTGGTGTCC+GGG | - | chr4.2:51535662-51535681 | MS.gene061294:intron | 50.0% | |
| ! | AGGTTGATCCGAGGACTCAT+CGG | - | chr4.2:51535411-51535430 | MS.gene061294:CDS | 50.0% |
| ! | TCCCCGTTGAAATGATGGTG+GGG | + | chr4.2:51535735-51535754 | None:intergenic | 50.0% |
| ! | TGCTGAAGAAGCTGATGGGT+CGG | - | chr4.2:51536076-51536095 | MS.gene061294:CDS | 50.0% |
| !! | ATTCGGGCATGGTGATGGTT+CGG | - | chr4.2:51536103-51536122 | MS.gene061294:CDS | 50.0% |
| ACGGAAGGGTAAACCCGCTA+AGG | - | chr4.2:51536244-51536263 | MS.gene061294:CDS | 55.0% | |
| ACGGACCAGTTGAGTGAACC+GGG | - | chr4.2:51535927-51535946 | MS.gene061294:CDS | 55.0% | |
| CCACCATCATTTCAACGGGG+AGG | - | chr4.2:51535734-51535753 | MS.gene061294:intron | 55.0% | |
| CCTCCCCGTTGAAATGATGG+TGG | + | chr4.2:51535737-51535756 | None:intergenic | 55.0% | |
| CGGGTTTACCCTTCCGTTCT+TGG | + | chr4.2:51536241-51536260 | None:intergenic | 55.0% | |
| CGTTAGCGACGGAGATGAGT+AGG | - | chr4.2:51535838-51535857 | MS.gene061294:CDS | 55.0% | |
| GCTGTGACCCAAGAACGGAA+GGG | - | chr4.2:51536230-51536249 | MS.gene061294:CDS | 55.0% | |
| GGGTAAACCCGCTAAGGTTG+TGG | - | chr4.2:51536250-51536269 | MS.gene061294:CDS | 55.0% | |
| GGGTCGGTTAAATTCGGGCA+TGG | - | chr4.2:51536092-51536111 | MS.gene061294:CDS | 55.0% | |
| GTGAACCCGGTTCACTCAAC+TGG | + | chr4.2:51535935-51535954 | None:intergenic | 55.0% | |
| GTGCCTCCCCGTTGAAATGA+TGG | + | chr4.2:51535740-51535759 | None:intergenic | 55.0% | |
| GTTGAGTGAACCGGGTTCAC+CGG | - | chr4.2:51535935-51535954 | MS.gene061294:CDS | 55.0% | |
| TCCTGGACCTTCTCTAGCAC+CGG | - | chr4.2:51535502-51535521 | MS.gene061294:CDS | 55.0% | |
| TGAGTCCTCGGATCAACCTC+CGG | + | chr4.2:51535410-51535429 | None:intergenic | 55.0% | |
| TGCTTGGCCACAACCTTAGC+GGG | + | chr4.2:51536260-51536279 | None:intergenic | 55.0% | |
| ! | GCCATGGATTGCGGCATCTA+TGG | - | chr4.2:51534786-51534805 | MS.gene061294:intron | 55.0% |
| ! | TCATTTCAACGGGGAGGCAC+AGG | - | chr4.2:51535740-51535759 | MS.gene061294:intron | 55.0% |
| !! | AAATGATGGTGGGGTCCACC+AGG | + | chr4.2:51535726-51535745 | None:intergenic | 55.0% |
| GGCTGTGACCCAAGAACGGA+AGG | - | chr4.2:51536229-51536248 | MS.gene061294:CDS | 60.0% | |
| TCAACCTCCGGTGCACCTTC+CGG | + | chr4.2:51535398-51535417 | None:intergenic | 60.0% | |
| ! | TAAACCGGAAGGTGCACCGG+AGG | - | chr4.2:51535391-51535410 | MS.gene061294:CDS | 60.0% |
| GAACCAGGCTTCTGCGGTGG+TGG | + | chr4.2:51535449-51535468 | None:intergenic | 65.0% | |
| GGAAGAGCAGGCGGAGAACC+AGG | + | chr4.2:51535464-51535483 | None:intergenic | 65.0% | |
| GGAGAACCAGGCTTCTGCGG+TGG | + | chr4.2:51535452-51535471 | None:intergenic | 65.0% | |
| GGCGGAGAACCAGGCTTCTG+CGG | + | chr4.2:51535455-51535474 | None:intergenic | 65.0% | |
| TCGGGTCGACCCGCCTTTGT+TGG | + | chr4.2:51535165-51535184 | None:intergenic | 65.0% | |
| ! | GCCGGTGCTAGAGAAGGTCC+AGG | + | chr4.2:51535506-51535525 | None:intergenic | 65.0% |
| ! | GTGCACCGGAGGTTGATCCG+AGG | - | chr4.2:51535402-51535421 | MS.gene061294:CDS | 65.0% |
| !! | CCATTACCTGGTGCTGGCGC+CGG | + | chr4.2:51535524-51535543 | None:intergenic | 65.0% |
| CCGGCGCCAGCACCAGGTAA+TGG | - | chr4.2:51535521-51535540 | MS.gene061294:CDS | 70.0% | |
| ! | CCAGGCTTCTGCGGTGGTGG+CGG | + | chr4.2:51535446-51535465 | None:intergenic | 70.0% |
| !! | GCTGGCGCCGGTGCTAGAGA+AGG | + | chr4.2:51535512-51535531 | None:intergenic | 70.0% |
| CCGCCACCACCGCAGAAGCC+TGG | - | chr4.2:51535443-51535462 | MS.gene061294:CDS | 75.0% | |
| !! | CTAGCACCGGCGCCAGCACC+AGG | - | chr4.2:51535515-51535534 | MS.gene061294:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 51534783 | 51536496 | 51534783 | ID=MS.gene061294 |
| chr4.2 | mRNA | 51534783 | 51536496 | 51534783 | ID=MS.gene061294.t1;Parent=MS.gene061294 |
| chr4.2 | exon | 51535743 | 51536496 | 51535743 | ID=MS.gene061294.t1.exon1;Parent=MS.gene061294.t1 |
| chr4.2 | CDS | 51535743 | 51536496 | 51535743 | ID=cds.MS.gene061294.t1;Parent=MS.gene061294.t1 |
| chr4.2 | exon | 51534992 | 51535558 | 51534992 | ID=MS.gene061294.t1.exon2;Parent=MS.gene061294.t1 |
| chr4.2 | CDS | 51534992 | 51535558 | 51534992 | ID=cds.MS.gene061294.t1;Parent=MS.gene061294.t1 |
| chr4.2 | exon | 51534783 | 51534793 | 51534783 | ID=MS.gene061294.t1.exon3;Parent=MS.gene061294.t1 |
| chr4.2 | CDS | 51534783 | 51534793 | 51534783 | ID=cds.MS.gene061294.t1;Parent=MS.gene061294.t1 |
| Gene Sequence |
| Protein sequence |
