Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061596.t1 | XP_003600598.1 | 97.9 | 518 | 11 | 0 | 1 | 518 | 129 | 646 | 4.70E-284 | 986.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061596.t1 | Q9CAL3 | 38.2 | 532 | 293 | 11 | 2 | 514 | 130 | 644 | 1.2e-89 | 332.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061596.t1 | G7J7V5 | 97.9 | 518 | 11 | 0 | 1 | 518 | 129 | 646 | 3.4e-284 | 986.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049664 | MS.gene061596 | 0.996904 | 6.45E-234 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 108 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCCCAAAATTGCTGATTT+TGG | 0.089891 | 3.2:+59662586 | MS.gene061596:CDS |
| CAATCCAAAATCAGCAATTT+TGG | 0.106722 | 3.2:-59662590 | None:intergenic |
| GATATTACAGCCTACTTAAA+AGG | 0.207196 | 3.2:+59661249 | MS.gene061596:CDS |
| TTAGCAACACCTAAAATTAA+AGG | 0.216671 | 3.2:+59661000 | MS.gene061596:CDS |
| TTTGACCGCTTATGATTTCT+AGG | 0.227189 | 3.2:-59662861 | None:intergenic |
| AGGAATCTTGTTAGACTTCT+TGG | 0.250362 | 3.2:+59662218 | MS.gene061596:CDS |
| GTTATCATTCTTGCATTGTT+AGG | 0.278667 | 3.2:+59661614 | MS.gene061596:CDS |
| GGCACTGCATTTGGAACAAT+TGG | 0.299426 | 3.2:+59660952 | MS.gene061596:CDS |
| AGCAGTCAAGAAACTAGTTT+TGG | 0.303554 | 3.2:+59662130 | MS.gene061596:CDS |
| TCACTATACTTGTAGTTAAC+TGG | 0.315418 | 3.2:-59661856 | None:intergenic |
| TCCTTTGCAGGTAACATATT+GGG | 0.323737 | 3.2:+59661814 | MS.gene061596:intron |
| TCCAACAACACCACCTATAA+TGG | 0.335201 | 3.2:-59661573 | None:intergenic |
| TTCCTTTGCAGGTAACATAT+TGG | 0.339859 | 3.2:+59661813 | MS.gene061596:intron |
| TCTTCTCCATCATAGTCGTT+AGG | 0.347433 | 3.2:-59663278 | None:intergenic |
| AGCAACAAATGGGCCATTAT+AGG | 0.358087 | 3.2:+59661560 | MS.gene061596:CDS |
| GCAAAAGAAGGCACTGCATT+TGG | 0.362607 | 3.2:+59660943 | MS.gene061596:CDS |
| CATCTAAGCACAGGAGTTGC+AGG | 0.370669 | 3.2:+59662640 | MS.gene061596:CDS |
| ACAAACAAGGTTCCCTCAAT+TGG | 0.373710 | 3.2:+59662440 | MS.gene061596:CDS |
| TGACCTCTAGGAGCCCTCTT+AGG | 0.375772 | 3.2:-59661656 | None:intergenic |
| AAACTTGGAGAAGGAGGCTT+TGG | 0.385805 | 3.2:+59661916 | MS.gene061596:CDS |
| AGCCTTGACAAATTCTTGTT+TGG | 0.391286 | 3.2:+59662296 | MS.gene061596:CDS |
| ATCATCATCAGCCTTCATTT+CGG | 0.394820 | 3.2:-59662890 | None:intergenic |
| GCTCCACTAAGCTCCTGGTT+TGG | 0.401718 | 3.2:-59663388 | None:intergenic |
| TGTTTGTAGAAACGAATCTT+AGG | 0.401992 | 3.2:+59663432 | MS.gene061596:CDS |
| CATAGACAAGTATTCTCTCT+TGG | 0.414483 | 3.2:-59662256 | None:intergenic |
| CCTCCAAACCAGGAGCTTAG+TGG | 0.415879 | 3.2:+59663385 | MS.gene061596:CDS |
| GCCATTATAGGTGGTGTTGT+TGG | 0.418148 | 3.2:+59661572 | MS.gene061596:CDS |
| TACACCTTTGTTTCCAATTG+AGG | 0.421058 | 3.2:-59662453 | None:intergenic |
| GGTGTTGTTGGAGGTGTAGT+AGG | 0.428915 | 3.2:+59661584 | MS.gene061596:CDS |
| CCACTAAGCTCCTGGTTTGG+AGG | 0.429817 | 3.2:-59663385 | None:intergenic |
| AAGGAGGTTCAAGCAACAAA+TGG | 0.435148 | 3.2:+59661549 | MS.gene061596:intron |
| TATGCTCTACCATCACTGTT+AGG | 0.440917 | 3.2:-59661165 | None:intergenic |
| GAAGGCCACTCTACCTCAAC+TGG | 0.443028 | 3.2:+59663461 | MS.gene061596:CDS |
| TTGACCATGGATTGCATACT+CGG | 0.444416 | 3.2:-59662797 | None:intergenic |
| GACAATACAGAAAACCTAAG+AGG | 0.444476 | 3.2:+59661642 | MS.gene061596:CDS |
| CTTCTCCATCATAGTCGTTA+GGG | 0.448450 | 3.2:-59663277 | None:intergenic |
| GTGGAATTCCTCATGTAGAT+AGG | 0.448803 | 3.2:-59662506 | None:intergenic |
| TGGTGAATTCCTTCTTCAAA+AGG | 0.451695 | 3.2:+59662912 | MS.gene061596:CDS |
| ACACAGGCATAGTTGGTTGC+AGG | 0.454230 | 3.2:-59663412 | None:intergenic |
| TAAGTAGGCTGTAATATCAA+TGG | 0.455668 | 3.2:-59661244 | None:intergenic |
| TGTTTAGCTTGTTTAACAGT+TGG | 0.457248 | 3.2:+59661117 | MS.gene061596:CDS |
| TCATTCTTGCATTGTTAGGT+TGG | 0.459617 | 3.2:+59661618 | MS.gene061596:CDS |
| TTATAAGCAATGTTCATCAT+AGG | 0.460949 | 3.2:+59662198 | MS.gene061596:CDS |
| CTTTATATCTCTATGTATGA+TGG | 0.463726 | 3.2:-59662533 | None:intergenic |
| CAGGTGCTCCACTAAGCTCC+TGG | 0.465421 | 3.2:-59663393 | None:intergenic |
| ACACCTTTGTTTCCAATTGA+GGG | 0.468868 | 3.2:-59662452 | None:intergenic |
| TCTACAAACACAGGCATAGT+TGG | 0.488079 | 3.2:-59663419 | None:intergenic |
| CCATGGTCAATTATCAGAAA+AGG | 0.489915 | 3.2:+59662810 | MS.gene061596:CDS |
| TTCAATGATGAAAATAAACT+TGG | 0.493858 | 3.2:+59661901 | MS.gene061596:CDS |
| TTTAGGCACAGCAAGGGGAC+TGG | 0.495415 | 3.2:+59662483 | MS.gene061596:CDS |
| TTGTGTACTCAAGCATCAGC+TGG | 0.498741 | 3.2:+59663329 | MS.gene061596:CDS |
| TGGGGTGAAGATTATCATCA+AGG | 0.500552 | 3.2:-59662570 | None:intergenic |
| TGATAGAGAAAAGGAGGCAG+TGG | 0.516037 | 3.2:-59663501 | None:intergenic |
| TCAAAAGAGTACCGAAATGA+AGG | 0.518886 | 3.2:+59662879 | MS.gene061596:CDS |
| TCATCGAGCTGATAGAGAAA+AGG | 0.520378 | 3.2:-59663510 | None:intergenic |
| ATTATAGGTGGTGTTGTTGG+AGG | 0.521489 | 3.2:+59661575 | MS.gene061596:CDS |
| TACGATCAAACAACTCAACC+TGG | 0.523511 | 3.2:+59660892 | MS.gene061596:CDS |
| CTTAGATGAGATCGATCCCC+TGG | 0.523733 | 3.2:-59662625 | None:intergenic |
| GCACTTGGAGCTCGTGGACA+AGG | 0.530490 | 3.2:+59663247 | MS.gene061596:CDS |
| AGGAGGTTCAAGCAACAAAT+GGG | 0.531172 | 3.2:+59661550 | MS.gene061596:intron |
| GCATGAGAGAGGCATGCACT+TGG | 0.536194 | 3.2:+59663232 | MS.gene061596:CDS |
| AATTGGACATAAAGTGCTGA+TGG | 0.538801 | 3.2:+59660969 | MS.gene061596:CDS |
| CTCTACCATCACTGTTAGGA+AGG | 0.539184 | 3.2:-59661161 | None:intergenic |
| CTAAGCTCCTGGTTTGGAGG+AGG | 0.550036 | 3.2:-59663382 | None:intergenic |
| AGGCATGCACTTGGAGCTCG+TGG | 0.551004 | 3.2:+59663241 | MS.gene061596:CDS |
| AAGAACCAGTTGAGGTAGAG+TGG | 0.551499 | 3.2:-59663466 | None:intergenic |
| GAAAATAAACTTGGAGAAGG+AGG | 0.553682 | 3.2:+59661910 | MS.gene061596:CDS |
| TAGTAGTCCTCCTCCAAACC+AGG | 0.561741 | 3.2:+59663375 | MS.gene061596:CDS |
| GATGGTAGAGCATATGATGC+AGG | 0.563385 | 3.2:+59661174 | MS.gene061596:CDS |
| TACCAAACAAGAATTTGTCA+AGG | 0.564702 | 3.2:-59662298 | None:intergenic |
| CCACATGATATACCATTCCC+AGG | 0.567781 | 3.2:-59660910 | None:intergenic |
| CAAACAACTCAACCTGGGAA+TGG | 0.568219 | 3.2:+59660898 | MS.gene061596:CDS |
| GATGAAAATAAACTTGGAGA+AGG | 0.569248 | 3.2:+59661907 | MS.gene061596:CDS |
| TTAGACCCTAACGACTATGA+TGG | 0.574956 | 3.2:+59663272 | MS.gene061596:CDS |
| GGGAACAAGACTGCAAAAGA+AGG | 0.576018 | 3.2:+59660931 | MS.gene061596:CDS |
| GATCGATCTCATCTAAGCAC+AGG | 0.584533 | 3.2:+59662631 | MS.gene061596:CDS |
| AGGCTTTGGTGATGTATACA+AGG | 0.588632 | 3.2:+59661930 | MS.gene061596:CDS |
| GTTCCCTCAATTGGAAACAA+AGG | 0.590575 | 3.2:+59662449 | MS.gene061596:CDS |
| CCTGGGAATGGTATATCATG+TGG | 0.593014 | 3.2:+59660910 | MS.gene061596:CDS |
| AATACTTGTCTATGAATACA+TGG | 0.595259 | 3.2:+59662265 | MS.gene061596:CDS |
| GCTGAAACAGTCACAGAAAG+TGG | 0.595779 | 3.2:+59661093 | MS.gene061596:CDS |
| TCGAGCTGATAGAGAAAAGG+AGG | 0.603133 | 3.2:-59663507 | None:intergenic |
| CTCTATGTATGATGGAAATG+TGG | 0.608938 | 3.2:-59662525 | None:intergenic |
| ACAATACAGAAAACCTAAGA+GGG | 0.616429 | 3.2:+59661643 | MS.gene061596:CDS |
| AACAAATGGGCCATTATAGG+TGG | 0.619356 | 3.2:+59661563 | MS.gene061596:CDS |
| TTGGGAGCAACTGAGTTGAA+AGG | 0.620501 | 3.2:+59661832 | MS.gene061596:CDS |
| ACGATCAAACAACTCAACCT+GGG | 0.626005 | 3.2:+59660893 | MS.gene061596:CDS |
| ACTTGCCTTCCTAACAGTGA+TGG | 0.627486 | 3.2:+59661156 | MS.gene061596:CDS |
| ACTACTACTTCAGACATCGT+TGG | 0.629191 | 3.2:-59663359 | None:intergenic |
| ACTAAGACACAAGTGACACC+TGG | 0.631129 | 3.2:+59661036 | MS.gene061596:CDS |
| ACATGGAAACTGCATGAGAG+AGG | 0.636258 | 3.2:+59663221 | MS.gene061596:CDS |
| CTGGGAATGGTATATCATGT+GGG | 0.643803 | 3.2:+59660911 | MS.gene061596:CDS |
| GCACCCGAGTATGCAATCCA+TGG | 0.646266 | 3.2:+59662793 | MS.gene061596:CDS |
| AGATTCGTTTCTACAAACAC+AGG | 0.648684 | 3.2:-59663428 | None:intergenic |
| GAAATGAAGGCTGATGATGA+TGG | 0.648912 | 3.2:+59662892 | MS.gene061596:CDS |
| AAGGCTGATACCTACAGCTA+CGG | 0.651310 | 3.2:+59662829 | MS.gene061596:CDS |
| TGACCATGGATTGCATACTC+GGG | 0.651611 | 3.2:-59662796 | None:intergenic |
| AGACGTAGAAGAACCAGTTG+AGG | 0.661892 | 3.2:-59663474 | None:intergenic |
| GGGACTGGCCTATCTACATG+AGG | 0.669259 | 3.2:+59662498 | MS.gene061596:CDS |
| TGTTTCAGCACACTGTGCAA+TGG | 0.677270 | 3.2:-59661079 | None:intergenic |
| ACGAATCTTAGGTCTCGTGA+AGG | 0.677836 | 3.2:+59663443 | MS.gene061596:CDS |
| AATTAAATAGGTAACAAACA+AGG | 0.679508 | 3.2:+59662427 | MS.gene061596:intron |
| ATGGTAGAGCATATGATGCA+GGG | 0.695776 | 3.2:+59661175 | MS.gene061596:CDS |
| GACTACAATACCGTAGCTGT+AGG | 0.696728 | 3.2:-59662839 | None:intergenic |
| GTAGTCCTAGAAATCATAAG+CGG | 0.697572 | 3.2:+59662856 | MS.gene061596:CDS |
| TAAATTGAACTATTACCACC+AGG | 0.704143 | 3.2:-59661054 | None:intergenic |
| AAACCTAAGAGGGCTCCTAG+AGG | 0.707663 | 3.2:+59661653 | MS.gene061596:CDS |
| AAGACACAAGTGACACCTGG+TGG | 0.714556 | 3.2:+59661039 | MS.gene061596:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAAATGACTTAA+GGG | - | chr3.2:59662970-59662989 | None:intergenic | 10.0% |
| !! | GTAAAAATAAAAATGACTTA+AGG | - | chr3.2:59662971-59662990 | None:intergenic | 15.0% |
| !! | TTAAAATTGAAATTATGCAA+AGG | - | chr3.2:59661967-59661986 | None:intergenic | 15.0% |
| !! | TTAACAAGTTCATATATTTA+AGG | - | chr3.2:59662409-59662428 | None:intergenic | 15.0% |
| !!! | TATGAACTTGTTAATTAAAT+AGG | + | chr3.2:59662415-59662434 | MS.gene061596:intron | 15.0% |
| !!! | TTTTTTTTTTATTTGCACAA+CGG | + | chr3.2:59662035-59662054 | MS.gene061596:intron | 15.0% |
| !! | AAATTTAATGATTGTCTTAG+TGG | - | chr3.2:59662343-59662362 | None:intergenic | 20.0% |
| !! | AACAAAACAATACTTATACA+TGG | - | chr3.2:59662752-59662771 | None:intergenic | 20.0% |
| !! | AATTAAATAGGTAACAAACA+AGG | + | chr3.2:59662427-59662446 | MS.gene061596:intron | 20.0% |
| !! | GTTGTGCAAATAAAAAAAAA+AGG | - | chr3.2:59662036-59662055 | None:intergenic | 20.0% |
| !! | TCTCTTAATCATTTAACATA+TGG | + | chr3.2:59663177-59663196 | MS.gene061596:intron | 20.0% |
| !! | TGTTCAAATAAATGTAATCT+AGG | - | chr3.2:59662695-59662714 | None:intergenic | 20.0% |
| !! | TTCAATGATGAAAATAAACT+TGG | + | chr3.2:59661901-59661920 | MS.gene061596:CDS | 20.0% |
| !!! | AATGTTTTTATACATGTATC+CGG | - | chr3.2:59661389-59661408 | None:intergenic | 20.0% |
| !!! | GCAAAAAAACCTTTAATTTT+AGG | - | chr3.2:59661012-59661031 | None:intergenic | 20.0% |
| ! | AATACTTGTCTATGAATACA+TGG | + | chr3.2:59662265-59662284 | MS.gene061596:CDS | 25.0% |
| ! | AATTTGCATTTAAGTATACG+CGG | - | chr3.2:59661440-59661459 | None:intergenic | 25.0% |
| ! | ACTTGTCATTATTATCACAT+CGG | - | chr3.2:59661354-59661373 | None:intergenic | 25.0% |
| ! | CTTTATATCTCTATGTATGA+TGG | - | chr3.2:59662536-59662555 | None:intergenic | 25.0% |
| ! | TTAGCAACACCTAAAATTAA+AGG | + | chr3.2:59661000-59661019 | MS.gene061596:CDS | 25.0% |
| ! | TTATAAGCAATGTTCATCAT+AGG | + | chr3.2:59662198-59662217 | MS.gene061596:CDS | 25.0% |
| ! | TTCAATCATGCTATTGAATA+GGG | + | chr3.2:59662083-59662102 | MS.gene061596:intron | 25.0% |
| ! | TTTCAATCATGCTATTGAAT+AGG | + | chr3.2:59662082-59662101 | MS.gene061596:intron | 25.0% |
| !! | AATCCAAAATCAGCAATTTT+GGG | - | chr3.2:59662592-59662611 | None:intergenic | 25.0% |
| !! | ACTATTCTTTTGTGTTATGA+AGG | + | chr3.2:59661530-59661549 | MS.gene061596:intron | 25.0% |
| !! | ACTTAAAAGGTACGATTATT+TGG | + | chr3.2:59661262-59661281 | MS.gene061596:intron | 25.0% |
| !! | AGTTCATATATTTAAGGCTA+TGG | - | chr3.2:59662403-59662422 | None:intergenic | 25.0% |
| !!! | AACTAGCATTAACTACTTTT+AGG | - | chr3.2:59663031-59663050 | None:intergenic | 25.0% |
| !!! | AATAATCGTACCTTTTAAGT+AGG | - | chr3.2:59661262-59661281 | None:intergenic | 25.0% |
| !!! | CAAAGGTGTAACATAATTTT+AGG | + | chr3.2:59662466-59662485 | MS.gene061596:CDS | 25.0% |
| !!! | TAATTTTAGGTGTTGCTAAT+TGG | - | chr3.2:59660999-59661018 | None:intergenic | 25.0% |
| AAAGTAGTACCTCATTTCAT+TGG | + | chr3.2:59661496-59661515 | MS.gene061596:intron | 30.0% | |
| ACAATACAGAAAACCTAAGA+GGG | + | chr3.2:59661643-59661662 | MS.gene061596:CDS | 30.0% | |
| AGACACTAACAATGCATTAT+AGG | + | chr3.2:59661719-59661738 | MS.gene061596:intron | 30.0% | |
| GATATTACAGCCTACTTAAA+AGG | + | chr3.2:59661249-59661268 | MS.gene061596:CDS | 30.0% | |
| GATGAAAATAAACTTGGAGA+AGG | + | chr3.2:59661907-59661926 | MS.gene061596:CDS | 30.0% | |
| GTCTGATTATCAGCAAAAAA+GGG | - | chr3.2:59661225-59661244 | None:intergenic | 30.0% | |
| GTTATCATTCTTGCATTGTT+AGG | + | chr3.2:59661614-59661633 | MS.gene061596:CDS | 30.0% | |
| GTTATGTTTCCCTTACATTA+GGG | - | chr3.2:59663068-59663087 | None:intergenic | 30.0% | |
| TAAATTGAACTATTACCACC+AGG | - | chr3.2:59661057-59661076 | None:intergenic | 30.0% | |
| TAAGTAGGCTGTAATATCAA+TGG | - | chr3.2:59661247-59661266 | None:intergenic | 30.0% | |
| TACCAAACAAGAATTTGTCA+AGG | - | chr3.2:59662301-59662320 | None:intergenic | 30.0% | |
| TCACTATACTTGTAGTTAAC+TGG | - | chr3.2:59661859-59661878 | None:intergenic | 30.0% | |
| TGTTATGTTTCCCTTACATT+AGG | - | chr3.2:59663069-59663088 | None:intergenic | 30.0% | |
| TGTTTGTAGAAACGAATCTT+AGG | + | chr3.2:59663432-59663451 | MS.gene061596:CDS | 30.0% | |
| TTAAATGCAAATTGCGAACT+TGG | + | chr3.2:59661447-59661466 | MS.gene061596:intron | 30.0% | |
| TTATGTTTCCCTTACATTAG+GGG | - | chr3.2:59663067-59663086 | None:intergenic | 30.0% | |
| TTCAAAAACCCCTAATGTAA+GGG | + | chr3.2:59663056-59663075 | MS.gene061596:intron | 30.0% | |
| TTTCAAAAACCCCTAATGTA+AGG | + | chr3.2:59663055-59663074 | MS.gene061596:intron | 30.0% | |
| ! | ATCCAAAATCAGCAATTTTG+GGG | - | chr3.2:59662591-59662610 | None:intergenic | 30.0% |
| ! | ATTCTTTTGTGTTATGAAGG+AGG | + | chr3.2:59661533-59661552 | MS.gene061596:intron | 30.0% |
| ! | CAATCCAAAATCAGCAATTT+TGG | - | chr3.2:59662593-59662612 | None:intergenic | 30.0% |
| ! | GAATAGGGTACTTTGAAAAA+TGG | + | chr3.2:59662098-59662117 | MS.gene061596:intron | 30.0% |
| ! | TGATTTTCACTGAATAGACA+TGG | + | chr3.2:59663204-59663223 | MS.gene061596:intron | 30.0% |
| ! | TTACATTAGGGGTTTTTGAA+AGG | - | chr3.2:59663056-59663075 | None:intergenic | 30.0% |
| !! | ATTGTTTTGTTGATCTTGTC+AGG | + | chr3.2:59662761-59662780 | MS.gene061596:intron | 30.0% |
| !! | TGTTTAGCTTGTTTAACAGT+TGG | + | chr3.2:59661117-59661136 | MS.gene061596:CDS | 30.0% |
| !! | TTGTTTTGTTGATCTTGTCA+GGG | + | chr3.2:59662762-59662781 | MS.gene061596:intron | 30.0% |
| !!! | CAAAATTGCTGATTTTGGAT+TGG | + | chr3.2:59662591-59662610 | MS.gene061596:CDS | 30.0% |
| ACATCAGTTCCAATGAAATG+AGG | - | chr3.2:59661508-59661527 | None:intergenic | 35.0% | |
| AGATTCGTTTCTACAAACAC+AGG | - | chr3.2:59663431-59663450 | None:intergenic | 35.0% | |
| AGCCTTGACAAATTCTTGTT+TGG | + | chr3.2:59662296-59662315 | MS.gene061596:CDS | 35.0% | |
| AGGAATCTTGTTAGACTTCT+TGG | + | chr3.2:59662218-59662237 | MS.gene061596:CDS | 35.0% | |
| ATCATCATCAGCCTTCATTT+CGG | - | chr3.2:59662893-59662912 | None:intergenic | 35.0% | |
| CATAGACAAGTATTCTCTCT+TGG | - | chr3.2:59662259-59662278 | None:intergenic | 35.0% | |
| CCATGGTCAATTATCAGAAA+AGG | + | chr3.2:59662810-59662829 | MS.gene061596:CDS | 35.0% | |
| CTAGAGTGACTCTTACAAAA+AGG | + | chr3.2:59663141-59663160 | MS.gene061596:intron | 35.0% | |
| GAAAATAAACTTGGAGAAGG+AGG | + | chr3.2:59661910-59661929 | MS.gene061596:CDS | 35.0% | |
| GACAATACAGAAAACCTAAG+AGG | + | chr3.2:59661642-59661661 | MS.gene061596:CDS | 35.0% | |
| GGTCTGATTATCAGCAAAAA+AGG | - | chr3.2:59661226-59661245 | None:intergenic | 35.0% | |
| GTAGTCCTAGAAATCATAAG+CGG | + | chr3.2:59662856-59662875 | MS.gene061596:CDS | 35.0% | |
| TCATTCTTGCATTGTTAGGT+TGG | + | chr3.2:59661618-59661637 | MS.gene061596:CDS | 35.0% | |
| TCCTTTGCAGGTAACATATT+GGG | + | chr3.2:59661814-59661833 | MS.gene061596:intron | 35.0% | |
| TGATTAAGAGATAATCCCTC+TGG | - | chr3.2:59663168-59663187 | None:intergenic | 35.0% | |
| TGGTGAATTCCTTCTTCAAA+AGG | + | chr3.2:59662912-59662931 | MS.gene061596:CDS | 35.0% | |
| TTCCTTTGCAGGTAACATAT+TGG | + | chr3.2:59661813-59661832 | MS.gene061596:intron | 35.0% | |
| TTTGACCGCTTATGATTTCT+AGG | - | chr3.2:59662864-59662883 | None:intergenic | 35.0% | |
| ! | ACACCTTTGTTTCCAATTGA+GGG | - | chr3.2:59662455-59662474 | None:intergenic | 35.0% |
| ! | ACATAATTTTAGGCACAGCA+AGG | + | chr3.2:59662476-59662495 | MS.gene061596:CDS | 35.0% |
| ! | ATAATTTTAGGCACAGCAAG+GGG | + | chr3.2:59662478-59662497 | MS.gene061596:CDS | 35.0% |
| ! | CATAATTTTAGGCACAGCAA+GGG | + | chr3.2:59662477-59662496 | MS.gene061596:CDS | 35.0% |
| ! | CCTTTTCTGATAATTGACCA+TGG | - | chr3.2:59662813-59662832 | None:intergenic | 35.0% |
| ! | CTCTATGTATGATGGAAATG+TGG | - | chr3.2:59662528-59662547 | None:intergenic | 35.0% |
| ! | CTTTTTGTAAGAGTCACTCT+AGG | - | chr3.2:59663143-59663162 | None:intergenic | 35.0% |
| ! | TACACCTTTGTTTCCAATTG+AGG | - | chr3.2:59662456-59662475 | None:intergenic | 35.0% |
| !! | AATTGGACATAAAGTGCTGA+TGG | + | chr3.2:59660969-59660988 | MS.gene061596:CDS | 35.0% |
| !! | AGCAGTCAAGAAACTAGTTT+TGG | + | chr3.2:59662130-59662149 | MS.gene061596:CDS | 35.0% |
| !! | AGTTGCTTACCTTTTGAAGA+AGG | - | chr3.2:59662924-59662943 | None:intergenic | 35.0% |
| !! | TCAAAAGAGTACCGAAATGA+AGG | + | chr3.2:59662879-59662898 | MS.gene061596:CDS | 35.0% |
| !! | TGTTTTGTTGATCTTGTCAG+GGG | + | chr3.2:59662763-59662782 | MS.gene061596:intron | 35.0% |
| !!! | GCAGTCAAGAAACTAGTTTT+GGG | + | chr3.2:59662131-59662150 | MS.gene061596:CDS | 35.0% |
| AAACTCATGTGTTCCTTTGC+AGG | + | chr3.2:59661802-59661821 | MS.gene061596:intron | 40.0% | |
| AACAAATGGGCCATTATAGG+TGG | + | chr3.2:59661563-59661582 | MS.gene061596:CDS | 40.0% | |
| AAGGAGGTTCAAGCAACAAA+TGG | + | chr3.2:59661549-59661568 | MS.gene061596:intron | 40.0% | |
| ACAAACAAGGTTCCCTCAAT+TGG | + | chr3.2:59662440-59662459 | MS.gene061596:CDS | 40.0% | |
| ACGATCAAACAACTCAACCT+GGG | + | chr3.2:59660893-59660912 | MS.gene061596:CDS | 40.0% | |
| ACTACTACTTCAGACATCGT+TGG | - | chr3.2:59663362-59663381 | None:intergenic | 40.0% | |
| ACTCTTACAAAAAGGACCAG+AGG | + | chr3.2:59663149-59663168 | MS.gene061596:intron | 40.0% | |
| AGCAACAAATGGGCCATTAT+AGG | + | chr3.2:59661560-59661579 | MS.gene061596:CDS | 40.0% | |
| AGGAGGTTCAAGCAACAAAT+GGG | + | chr3.2:59661550-59661569 | MS.gene061596:intron | 40.0% | |
| ATGGTAGAGCATATGATGCA+GGG | + | chr3.2:59661175-59661194 | MS.gene061596:CDS | 40.0% | |
| CTCTTACAAAAAGGACCAGA+GGG | + | chr3.2:59663150-59663169 | MS.gene061596:intron | 40.0% | |
| CTGGGAATGGTATATCATGT+GGG | + | chr3.2:59660911-59660930 | MS.gene061596:CDS | 40.0% | |
| CTTCTCCATCATAGTCGTTA+GGG | - | chr3.2:59663280-59663299 | None:intergenic | 40.0% | |
| GTGGAATTCCTCATGTAGAT+AGG | - | chr3.2:59662509-59662528 | None:intergenic | 40.0% | |
| GTTCCCTCAATTGGAAACAA+AGG | + | chr3.2:59662449-59662468 | MS.gene061596:CDS | 40.0% | |
| TACGATCAAACAACTCAACC+TGG | + | chr3.2:59660892-59660911 | MS.gene061596:CDS | 40.0% | |
| TATGCTCTACCATCACTGTT+AGG | - | chr3.2:59661168-59661187 | None:intergenic | 40.0% | |
| TCATCGAGCTGATAGAGAAA+AGG | - | chr3.2:59663513-59663532 | None:intergenic | 40.0% | |
| TCCAACAACACCACCTATAA+TGG | - | chr3.2:59661576-59661595 | None:intergenic | 40.0% | |
| TCCCAATATGTTACCTGCAA+AGG | - | chr3.2:59661818-59661837 | None:intergenic | 40.0% | |
| TCTACAAACACAGGCATAGT+TGG | - | chr3.2:59663422-59663441 | None:intergenic | 40.0% | |
| TCTTCTCCATCATAGTCGTT+AGG | - | chr3.2:59663281-59663300 | None:intergenic | 40.0% | |
| TGGGGTGAAGATTATCATCA+AGG | - | chr3.2:59662573-59662592 | None:intergenic | 40.0% | |
| TTAGACCCTAACGACTATGA+TGG | + | chr3.2:59663272-59663291 | MS.gene061596:CDS | 40.0% | |
| ! | GAAATGAAGGCTGATGATGA+TGG | + | chr3.2:59662892-59662911 | MS.gene061596:CDS | 40.0% |
| ! | TTGACCATGGATTGCATACT+CGG | - | chr3.2:59662800-59662819 | None:intergenic | 40.0% |
| !! | AGGCTTTGGTGATGTATACA+AGG | + | chr3.2:59661930-59661949 | MS.gene061596:CDS | 40.0% |
| !! | ATTATAGGTGGTGTTGTTGG+AGG | + | chr3.2:59661575-59661594 | MS.gene061596:CDS | 40.0% |
| !!! | CACCCCAAAATTGCTGATTT+TGG | + | chr3.2:59662586-59662605 | MS.gene061596:CDS | 40.0% |
| AAACTTGGAGAAGGAGGCTT+TGG | + | chr3.2:59661916-59661935 | MS.gene061596:CDS | 45.0% | |
| AACATGCATCACTGACCTCT+AGG | - | chr3.2:59661671-59661690 | None:intergenic | 45.0% | |
| AAGAACCAGTTGAGGTAGAG+TGG | - | chr3.2:59663469-59663488 | None:intergenic | 45.0% | |
| AAGGCTGATACCTACAGCTA+CGG | + | chr3.2:59662829-59662848 | MS.gene061596:CDS | 45.0% | |
| ACATGGAAACTGCATGAGAG+AGG | + | chr3.2:59663221-59663240 | MS.gene061596:CDS | 45.0% | |
| ACGAATCTTAGGTCTCGTGA+AGG | + | chr3.2:59663443-59663462 | MS.gene061596:CDS | 45.0% | |
| ACTAAGACACAAGTGACACC+TGG | + | chr3.2:59661036-59661055 | MS.gene061596:CDS | 45.0% | |
| ACTTGCCTTCCTAACAGTGA+TGG | + | chr3.2:59661156-59661175 | MS.gene061596:CDS | 45.0% | |
| AGACGTAGAAGAACCAGTTG+AGG | - | chr3.2:59663477-59663496 | None:intergenic | 45.0% | |
| CAAACAACTCAACCTGGGAA+TGG | + | chr3.2:59660898-59660917 | MS.gene061596:CDS | 45.0% | |
| CCACATGATATACCATTCCC+AGG | - | chr3.2:59660913-59660932 | None:intergenic | 45.0% | |
| CCTGGGAATGGTATATCATG+TGG | + | chr3.2:59660910-59660929 | MS.gene061596:CDS | 45.0% | |
| CTCTACCATCACTGTTAGGA+AGG | - | chr3.2:59661164-59661183 | None:intergenic | 45.0% | |
| GACAAGTGAGTGATCATGAC+CGG | + | chr3.2:59661367-59661386 | MS.gene061596:intron | 45.0% | |
| GACTACAATACCGTAGCTGT+AGG | - | chr3.2:59662842-59662861 | None:intergenic | 45.0% | |
| GATCGATCTCATCTAAGCAC+AGG | + | chr3.2:59662631-59662650 | MS.gene061596:CDS | 45.0% | |
| GATGGTAGAGCATATGATGC+AGG | + | chr3.2:59661174-59661193 | MS.gene061596:CDS | 45.0% | |
| GCTGAAACAGTCACAGAAAG+TGG | + | chr3.2:59661093-59661112 | MS.gene061596:CDS | 45.0% | |
| GGAGTTGCAGGAACATTGTA+AGG | + | chr3.2:59662652-59662671 | MS.gene061596:intron | 45.0% | |
| GGGAACAAGACTGCAAAAGA+AGG | + | chr3.2:59660931-59660950 | MS.gene061596:CDS | 45.0% | |
| TCGAGCTGATAGAGAAAAGG+AGG | - | chr3.2:59663510-59663529 | None:intergenic | 45.0% | |
| TGATAGAGAAAAGGAGGCAG+TGG | - | chr3.2:59663504-59663523 | None:intergenic | 45.0% | |
| TGTTTCAGCACACTGTGCAA+TGG | - | chr3.2:59661082-59661101 | None:intergenic | 45.0% | |
| TTGTGTACTCAAGCATCAGC+TGG | + | chr3.2:59663329-59663348 | MS.gene061596:CDS | 45.0% | |
| ! | GGCACTGCATTTGGAACAAT+TGG | + | chr3.2:59660952-59660971 | MS.gene061596:CDS | 45.0% |
| ! | TGACCATGGATTGCATACTC+GGG | - | chr3.2:59662799-59662818 | None:intergenic | 45.0% |
| ! | TTGGGAGCAACTGAGTTGAA+AGG | + | chr3.2:59661832-59661851 | MS.gene061596:CDS | 45.0% |
| !! | GCAAAAGAAGGCACTGCATT+TGG | + | chr3.2:59660943-59660962 | MS.gene061596:CDS | 45.0% |
| !! | GCCATTATAGGTGGTGTTGT+TGG | + | chr3.2:59661572-59661591 | MS.gene061596:CDS | 45.0% |
| !!! | TTGCTGATTTTGGATTGGCG+CGG | + | chr3.2:59662596-59662615 | MS.gene061596:CDS | 45.0% |
| AAACCTAAGAGGGCTCCTAG+AGG | + | chr3.2:59661653-59661672 | MS.gene061596:CDS | 50.0% | |
| AAGACACAAGTGACACCTGG+TGG | + | chr3.2:59661039-59661058 | MS.gene061596:CDS | 50.0% | |
| ACACAGGCATAGTTGGTTGC+AGG | - | chr3.2:59663415-59663434 | None:intergenic | 50.0% | |
| CATCTAAGCACAGGAGTTGC+AGG | + | chr3.2:59662640-59662659 | MS.gene061596:CDS | 50.0% | |
| CTTAGATGAGATCGATCCCC+TGG | - | chr3.2:59662628-59662647 | None:intergenic | 50.0% | |
| TAGTAGTCCTCCTCCAAACC+AGG | + | chr3.2:59663375-59663394 | MS.gene061596:CDS | 50.0% | |
| !! | GGTGTTGTTGGAGGTGTAGT+AGG | + | chr3.2:59661584-59661603 | MS.gene061596:CDS | 50.0% |
| CCTCCAAACCAGGAGCTTAG+TGG | + | chr3.2:59663385-59663404 | MS.gene061596:CDS | 55.0% | |
| GAAGGCCACTCTACCTCAAC+TGG | + | chr3.2:59663461-59663480 | MS.gene061596:CDS | 55.0% | |
| GCACCCGAGTATGCAATCCA+TGG | + | chr3.2:59662793-59662812 | MS.gene061596:CDS | 55.0% | |
| GCTCCACTAAGCTCCTGGTT+TGG | - | chr3.2:59663391-59663410 | None:intergenic | 55.0% | |
| TTTAGGCACAGCAAGGGGAC+TGG | + | chr3.2:59662483-59662502 | MS.gene061596:CDS | 55.0% | |
| ! | GCATGAGAGAGGCATGCACT+TGG | + | chr3.2:59663232-59663251 | MS.gene061596:CDS | 55.0% |
| ! | TGACCTCTAGGAGCCCTCTT+AGG | - | chr3.2:59661659-59661678 | None:intergenic | 55.0% |
| !! | CCACTAAGCTCCTGGTTTGG+AGG | - | chr3.2:59663388-59663407 | None:intergenic | 55.0% |
| !! | CTAAGCTCCTGGTTTGGAGG+AGG | - | chr3.2:59663385-59663404 | None:intergenic | 55.0% |
| !! | GGGACTGGCCTATCTACATG+AGG | + | chr3.2:59662498-59662517 | MS.gene061596:CDS | 55.0% |
| AGGCATGCACTTGGAGCTCG+TGG | + | chr3.2:59663241-59663260 | MS.gene061596:CDS | 60.0% | |
| CAGGTGCTCCACTAAGCTCC+TGG | - | chr3.2:59663396-59663415 | None:intergenic | 60.0% | |
| GCACTTGGAGCTCGTGGACA+AGG | + | chr3.2:59663247-59663266 | MS.gene061596:CDS | 60.0% | |
| ! | ATTGGCGCGGCTTTTGCCAG+GGG | + | chr3.2:59662609-59662628 | MS.gene061596:CDS | 60.0% |
| ! | GATTGGCGCGGCTTTTGCCA+GGG | + | chr3.2:59662608-59662627 | MS.gene061596:CDS | 60.0% |
| !! | GGATTGGCGCGGCTTTTGCC+AGG | + | chr3.2:59662607-59662626 | MS.gene061596:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59660873 | 59663532 | 59660873 | ID=MS.gene061596 |
| chr3.2 | mRNA | 59660873 | 59663532 | 59660873 | ID=MS.gene061596.t1;Parent=MS.gene061596 |
| chr3.2 | exon | 59660873 | 59661270 | 59660873 | ID=MS.gene061596.t1.exon1;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59660873 | 59661270 | 59660873 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| chr3.2 | exon | 59661552 | 59661674 | 59661552 | ID=MS.gene061596.t1.exon2;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59661552 | 59661674 | 59661552 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| chr3.2 | exon | 59661824 | 59661951 | 59661824 | ID=MS.gene061596.t1.exon3;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59661824 | 59661951 | 59661824 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| chr3.2 | exon | 59662104 | 59662317 | 59662104 | ID=MS.gene061596.t1.exon4;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59662104 | 59662317 | 59662104 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| chr3.2 | exon | 59662437 | 59662668 | 59662437 | ID=MS.gene061596.t1.exon5;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59662437 | 59662668 | 59662437 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| chr3.2 | exon | 59662783 | 59662933 | 59662783 | ID=MS.gene061596.t1.exon6;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59662783 | 59662933 | 59662783 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| chr3.2 | exon | 59663221 | 59663532 | 59663221 | ID=MS.gene061596.t1.exon7;Parent=MS.gene061596.t1 |
| chr3.2 | CDS | 59663221 | 59663532 | 59663221 | ID=cds.MS.gene061596.t1;Parent=MS.gene061596.t1 |
| Gene Sequence |
| Protein sequence |
