AlfalfaGEDB | MS.gene061771

M. sativa cultivar XinJiangDaYe / MS.gene061771

KEGG: -
GO: GO:0005975 GO:0008150 GO:0008152 GO:0044238 GO:0071704
PFAM: PF00704.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061771.t1	RHN40044.1	68	253	58	8	1	248	1	235	1.40E-84	322.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061771.t1	Q7M443	34.9	241	134	7	14	248	2	225	2.3e-27	124.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061771.t1	A0A396GKD7	68.0	253	58	8	1	248	1	235	1.0e-84	322.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051860	MS.gene061771	0.831517	1.60E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061771.t1	MTR_0002s0040	56.757	259	83	7	1	248	1	241	5.50e-86	258
MS.gene061771.t1	MTR_0263s0020	56.757	259	83	7	1	248	1	241	4.12e-85	255
MS.gene061771.t1	MTR_1457s0010	66.310	187	42	6	65	248	1	169	2.84e-74	225
MS.gene061771.t1	MTR_0002s1060	52.326	258	91	10	4	248	6	244	5.06e-66	207
MS.gene061771.t1	MTR_0443s0040	40.856	257	111	10	14	247	16	254	7.23e-43	147
MS.gene061771.t1	MTR_0062s0090	40.726	248	114	8	14	244	4	235	3.54e-41	143
MS.gene061771.t1	MTR_0062s0040	40.726	248	114	8	14	244	4	235	3.54e-41	143
MS.gene061771.t1	MTR_0062s0060	40.726	248	114	8	14	244	4	235	3.54e-41	143
MS.gene061771.t1	MTR_0062s0020	39.200	250	120	6	14	247	4	237	3.20e-40	140
MS.gene061771.t1	MTR_6g079630	33.884	242	139	6	12	248	32	257	3.47e-31	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAAGGATATTTAGTAG+GGG	-	57526:1380-1399	MS.gene061771:intergenic	30.0%
ATTTCGTTGTAGTCAATATC+AGG	-	57526:1145-1164	MS.gene061771:intergenic	30.0%
GAGAGAAAGGATATTTAGTA+GGG	-	57526:1381-1400	MS.gene061771:intergenic	30.0%
TATAAAAAGACTCAAGGAAG+AGG	+	57526:1543-1562	MS.gene061771:CDS	30.0%
TTTCGTTGTAGTCAATATCA+GGG	-	57526:1144-1163	MS.gene061771:intergenic	30.0%
AAGATTTCTCCAACTACGTT+GGG	+	57526:1515-1534	MS.gene061771:CDS	35.0%
ACCACAGTGACGATATTAAT+TGG	+	57526:1635-1654	MS.gene061771:CDS	35.0%
ACTTACAACGAAGATGGAAA+AGG	+	57526:1199-1218	MS.gene061771:CDS	35.0%
ATCTTCGTTGTAAGTCTCAT+GGG	-	57526:1194-1213	MS.gene061771:intergenic	35.0%
CCACAGTGACGATATTAATT+GGG	+	57526:1636-1655	MS.gene061771:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
57526	gene	1052	1796	1052	ID=MS.gene061771
57526	mRNA	1052	1796	1052	ID=MS.gene061771.t1;Parent=MS.gene061771
57526	exon	1052	1796	1052	ID=MS.gene061771.t1.exon1;Parent=MS.gene061771.t1
57526	CDS	1052	1796	1052	ID=cds.MS.gene061771.t1;Parent=MS.gene061771.t1

Gene Sequence

>MS.gene061771

ATGTCTCATCTCATCACCGGTAACACTGTTGATCGATTCATTTTACGAGAATACATTGGCGTGAAACCATACCCAAAATCTTTTATATTCCCTGATATTGACTACAACGAAATCGATTTCCATGTCATTTTGGCCTTTGCCCATGAGACTTACAACGAAGATGGAAAAGGCACCGGAAAATTCTATCCCGATTGGGATCTTGATATCTGCGGTATACCACGTGTGCAGGATATCAAGCTCAAGTATCCCAAGGTCAAGGTGGTACTTAGCATTGGTGGTCGTGATATACAAAGTGTGCAGGATATCATCAAGCACAAGGATATTCCCCCTACTAAATATCCTTTCTCTCCTATTGAAAAAGAATCCTGGTGTGATAATGCCGTCGATTCGCTCAAAAAGATCATCCAAGACTACACGTTTGATGGCATTGATATTCTCTATGACAACATCAATACCAATGAAGAAGATTTCTCCAACTACGTTGGGGACGTTATAAAAAGACTCAAGGAAGAGGTAGGTATCAATGTGGTGTCCATTGCTCCATCCCATGAAACTAATGAACACTACAAGCTACTCTACAGGGACCACAGTGACGATATTAATTGGGTTAACTACCAATTCTACATGCAGCCTAACCCCACTGACGAGACTGACTTTGTAGACCTGATCTATGTTAGACTCGCAAGGGAATGTTACACTTTTGAAAAACTCCTAGTAGGAGCAAGCACCGATCCACGTGACGGAC

Protein sequence

>MS.gene061771.t1

MSHLITGNTVDRFILREYIGVKPYPKSFIFPDIDYNEIDFHVILAFAHETYNEDGKGTGKFYPDWDLDICGIPRVQDIKLKYPKVKVVLSIGGRDIQSVQDIIKHKDIPPTKYPFSPIEKESWCDNAVDSLKKIIQDYTFDGIDILYDNINTNEEDFSNYVGDVIKRLKEEVGINVVSIAPSHETNEHYKLLYRDHSDDINWVNYQFYMQPNPTDETDFVDLIYVRLARECYTFEKLLVGASTDPRDG