AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061865


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061865.t1 MTR_7g099570 94.499 509 27 1 1 508 6 514 0.0 897
MS.gene061865.t1 MTR_7g099580 68.205 195 61 1 1 194 9 203 5.92e-86 270
MS.gene061865.t1 MTR_7g099580 78.723 47 10 0 419 465 238 284 5.81e-17 82.8
MS.gene061865.t1 MTR_1g069110 37.901 343 158 5 1 339 15 306 2.04e-58 201
MS.gene061865.t1 MTR_1g069110 50.000 128 60 2 381 508 236 359 5.37e-34 134
MS.gene061865.t1 MTR_7g099550 57.143 105 40 1 63 167 136 235 2.95e-29 116
MS.gene061865.t1 MTR_2g101320 25.231 432 247 10 32 461 134 491 1.45e-23 105
MS.gene061865.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 1.92e-21 98.6
MS.gene061865.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 2.65e-21 97.8
MS.gene061865.t1 MTR_7g021090 28.251 223 146 3 4 217 9 226 8.09e-20 92.4
MS.gene061865.t1 MTR_1g059930 30.526 190 118 4 4 184 12 196 3.65e-19 90.5
MS.gene061865.t1 MTR_8g072510 29.834 181 113 3 16 187 22 197 5.81e-18 87.0
MS.gene061865.t1 MTR_8g073260 28.571 203 131 5 7 200 14 211 6.52e-18 87.0
MS.gene061865.t1 MTR_8g068990 28.378 222 134 3 7 220 15 219 8.95e-18 86.7
MS.gene061865.t1 MTR_3g016210 29.834 181 113 4 16 187 22 197 1.07e-17 86.3
MS.gene061865.t1 MTR_8g062410 30.102 196 123 3 4 190 10 200 3.00e-17 84.7
MS.gene061865.t1 MTR_8g069880 31.579 190 116 4 7 187 10 194 3.48e-17 84.7
MS.gene061865.t1 MTR_8g039620 27.536 207 136 3 4 201 14 215 2.82e-16 81.6
MS.gene061865.t1 MTR_1g115575 28.082 292 177 10 4 287 135 401 4.79e-16 81.6
MS.gene061865.t1 MTR_7g451420 30.000 190 119 3 7 187 12 196 5.18e-16 79.7
MS.gene061865.t1 MTR_7g100390 30.542 203 125 5 2 199 82 273 1.03e-15 80.5
MS.gene061865.t1 MTR_8g467780 30.159 189 118 3 7 186 14 197 1.42e-14 76.6
MS.gene061865.t1 MTR_2g096190 29.902 204 127 5 2 200 99 291 2.49e-14 76.3
MS.gene061865.t1 MTR_3g105650 28.022 182 117 3 16 188 17 193 5.82e-14 74.3
MS.gene061865.t1 MTR_4g062100 28.063 253 155 7 4 250 74 305 7.76e-14 74.7
MS.gene061865.t1 MTR_1g032100 27.700 213 142 5 39 250 94 295 1.25e-13 73.9
MS.gene061865.t1 MTR_8g066670 24.436 266 177 6 16 264 1087 1345 4.69e-13 72.8
MS.gene061865.t1 MTR_8g105260 27.230 213 143 5 39 250 101 302 6.05e-13 71.6
MS.gene061865.t1 MTR_7g100430 26.275 255 162 6 39 289 161 393 8.82e-12 68.2
MS.gene061865.t1 MTR_7g117620 37.391 115 66 2 2 112 114 226 2.07e-11 67.0
MS.gene061865.t1 MTR_7g117620 25.359 209 117 5 37 214 82 282 9.12e-11 64.7
MS.gene061865.t1 MTR_7g087540 51.471 68 29 4 414 480 25 89 2.44e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061865.t1 AT4G10720 29.961 257 162 8 4 250 5 253 9.84e-21 95.1
MS.gene061865.t1 AT5G54610 32.569 218 134 5 11 220 12 224 1.25e-20 95.1
MS.gene061865.t1 AT4G10720 29.961 257 162 8 4 250 5 253 2.18e-20 94.4
MS.gene061865.t1 AT5G54620 30.876 217 136 4 2 209 3 214 4.55e-20 93.2
MS.gene061865.t1 AT1G14480 29.612 206 131 5 4 200 5 205 1.52e-17 85.9
MS.gene061865.t1 AT5G51160 30.612 196 116 6 65 250 42 227 4.27e-17 84.3
MS.gene061865.t1 AT5G15500 25.993 277 184 6 2 262 4 275 7.85e-17 83.6
MS.gene061865.t1 AT2G31820 32.843 204 118 6 4 202 193 382 9.72e-17 84.0
MS.gene061865.t1 AT1G14500 28.079 203 132 3 7 200 8 205 1.72e-16 82.4
MS.gene061865.t1 AT1G14480 31.707 164 103 3 4 163 5 163 2.72e-16 81.6
MS.gene061865.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene061865.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene061865.t1 AT3G12360 27.891 294 175 10 4 287 133 399 2.75e-13 73.2
MS.gene061865.t1 AT3G12360 27.891 294 175 10 4 287 121 387 2.89e-13 72.8
MS.gene061865.t1 AT5G60070 29.048 210 100 6 2 206 106 271 4.84e-13 72.0
MS.gene061865.t1 AT3G13950 39.655 116 65 3 397 508 4 118 9.04e-13 68.2
MS.gene061865.t1 AT5G50140 23.894 339 213 12 35 353 26 339 1.05e-12 70.9
MS.gene061865.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061865.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061865.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061865.t1 AT1G05640 29.317 249 144 8 39 282 191 412 4.17e-12 69.3
MS.gene061865.t1 AT3G09550 25.597 293 187 9 4 289 154 422 1.52e-11 67.4
MS.gene061865.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4
MS.gene061865.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4

Find 113 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAGGGTAACAATATTT+TGG 0.140494 7.4:-10750140 MS.gene061865:CDS
TCGCGAATCAAGCAAGTTTC+TGG 0.144507 7.4:+10750391 None:intergenic
TGCACTTATCAACTCCTTAA+TGG 0.167211 7.4:+10750315 None:intergenic
TCCAATAACCTTGGTTTATT+AGG 0.187112 7.4:+10749113 None:intergenic
ACCTAATAAACCAAGGTTAT+TGG 0.210805 7.4:-10749114 MS.gene061865:CDS
CTCTATGATGCATCATTAAA+AGG 0.232530 7.4:-10750661 MS.gene061865:CDS
ACCCGAATAGTTTCTGTTTC+CGG 0.272426 7.4:+10750289 None:intergenic
AACAACATGAACACAATAGA+TGG 0.289553 7.4:-10749165 MS.gene061865:CDS
AAAGACAAGAGAACAATTAA+TGG 0.291148 7.4:-10749083 MS.gene061865:CDS
TGCATCACTATGTGTGCTTT+TGG 0.293332 7.4:-10748864 MS.gene061865:CDS
GGTTACGCTTGTCCTGATTA+TGG 0.311723 7.4:-10748974 MS.gene061865:CDS
GTAAAGAAGCTATGTGTAAT+GGG 0.322353 7.4:+10750557 None:intergenic
GAAAATCCTCTGCCACACTA+TGG 0.322481 7.4:-10748453 MS.gene061865:CDS
TATCAAACGAGGACAAATTA+AGG 0.325515 7.4:-10750110 MS.gene061865:intron
AGCTCTTAAAGCTTCTGTTT+TGG 0.341636 7.4:+10749723 None:intergenic
TGCCGGAAACAGAAACTATT+CGG 0.348258 7.4:-10750291 MS.gene061865:CDS
CTAGAATTGTGTTCTGGGTT+AGG 0.351230 7.4:-10748628 MS.gene061865:CDS
GAAAACACACAAGTGCAAAA+TGG 0.355298 7.4:+10750240 None:intergenic
AAATAGCTAGAATTGTGTTC+TGG 0.368470 7.4:-10748634 MS.gene061865:intron
TTAGTCCACCGGGCGGTGTT+TGG 0.379011 7.4:-10749018 MS.gene061865:CDS
AAAATGAATTTAAGATAATC+TGG 0.381714 7.4:+10748908 None:intergenic
TAGTCCACCGGGCGGTGTTT+GGG 0.381761 7.4:-10749017 MS.gene061865:CDS
TTACACATAGCTTCTTTACT+TGG 0.383128 7.4:-10750553 MS.gene061865:CDS
TGGTGGTTGTGAAGGACTAT+TGG 0.387197 7.4:+10749357 None:intergenic
CTTCATCTAGCTTCGGCAAA+AGG 0.398211 7.4:-10750451 MS.gene061865:CDS
GTCCTCTCATTACAGCAAAA+TGG 0.410295 7.4:+10750347 None:intergenic
GAAACTCTACTTAGAATTAG+AGG 0.414613 7.4:+10750601 None:intergenic
GGTGGTTGTGAAGGACTATT+GGG 0.420600 7.4:+10749358 None:intergenic
AGGACGCGTAGGAACCATTA+AGG 0.421682 7.4:-10750329 MS.gene061865:CDS
AATAGCTAGAATTGTGTTCT+GGG 0.426330 7.4:-10748633 MS.gene061865:intron
TTCACATCAGCTGCTAAGTT+GGG 0.430939 7.4:+10750493 None:intergenic
AGTAAAGAAGCTATGTGTAA+TGG 0.433633 7.4:+10750556 None:intergenic
ATCGATGATTGTTGTGGTTG+TGG 0.434864 7.4:+10749451 None:intergenic
TTGTGTTCTGGGTTAGGTCT+AGG 0.438558 7.4:-10748622 MS.gene061865:CDS
TTTAAGAGCTTTATATATGT+TGG 0.440411 7.4:-10749710 MS.gene061865:CDS
CTGCAGTTGTAGGATATGTT+TGG 0.441485 7.4:-10748934 MS.gene061865:CDS
TGTAATGGGGTTTCAGAGAA+TGG 0.449861 7.4:+10750571 None:intergenic
GTTCACATCAGCTGCTAAGT+TGG 0.450012 7.4:+10750492 None:intergenic
ATCTAAGTTAAAAGTAGAAA+AGG 0.458916 7.4:-10748575 MS.gene061865:intron
TTGTGTGGTGATGGTGATTG+TGG 0.460725 7.4:+10749298 None:intergenic
AGTTGTAGAGGATGACTAAT+CGG 0.467947 7.4:+10749397 None:intergenic
TTGCCCTCTTCATCTAGCTT+CGG 0.469951 7.4:-10750458 MS.gene061865:CDS
TGTTGTTCATTAGCTATGCT+TGG 0.473040 7.4:+10749181 None:intergenic
GCCGGAAACAGAAACTATTC+GGG 0.478264 7.4:-10750290 MS.gene061865:CDS
GAAGCAGGAACTGCAGTTGT+AGG 0.479785 7.4:-10748944 MS.gene061865:CDS
TCATTAGCTATGCTTGGTGT+TGG 0.483018 7.4:+10749187 None:intergenic
TTGTGGATGTTGAGGCTCAT+TGG 0.485922 7.4:+10749315 None:intergenic
TTCATCTAGCTTCGGCAAAA+GGG 0.485961 7.4:-10750450 MS.gene061865:CDS
TCAGTCAGTAATTAGTCCAC+CGG 0.487845 7.4:-10749029 MS.gene061865:CDS
GTATGGCTAGCAAAATCTCT+TGG 0.489498 7.4:+10749679 None:intergenic
GAGGATGACTAATCGGTGAT+TGG 0.491854 7.4:+10749404 None:intergenic
TCAAAATGTGTTGAATTGTA+TGG 0.493536 7.4:+10749662 None:intergenic
GCTATGCTTGGTGTTGGTGA+AGG 0.497302 7.4:+10749193 None:intergenic
GGGTCGTCACTTGGTGAGAA+TGG 0.511325 7.4:+10749214 None:intergenic
AAAATCCTCTGCCACACTAT+GGG 0.517000 7.4:-10748452 MS.gene061865:CDS
GAAGGATTTGTTAGTTGTAG+AGG 0.529973 7.4:+10749385 None:intergenic
AACTGTCGAGGATCATTCCT+TGG 0.530579 7.4:+10749577 None:intergenic
GGAGTTGATAAGTGCAATGC+CGG 0.532038 7.4:-10750308 MS.gene061865:CDS
TGCTTCCCATAGTGTGGCAG+AGG 0.532654 7.4:+10748447 None:intergenic
GAACAACATTCACAAATCAA+TGG 0.538302 7.4:-10749550 MS.gene061865:CDS
TTGTGAGATGGTGGTTGTGA+AGG 0.538920 7.4:+10749349 None:intergenic
AGTGAGGGATTGTGAGATGG+TGG 0.541315 7.4:+10749340 None:intergenic
CTTGGTGAGAATGGTGGTGG+TGG 0.543098 7.4:+10749223 None:intergenic
TGGGAAGAAGATACAACAAA+AGG 0.543938 7.4:-10748998 MS.gene061865:CDS
CTCCTCTCATTGATTCAACA+AGG 0.545286 7.4:+10750191 None:intergenic
AACAGAAACTATTCGGGTGA+TGG 0.549369 7.4:-10750284 MS.gene061865:CDS
TCTTCTTCCCAAACACCGCC+CGG 0.555882 7.4:+10749010 None:intergenic
GCCACACTATGGGAAGCACT+TGG 0.556613 7.4:-10748442 MS.gene061865:CDS
AATGGTGGTGGTGGTTGTAG+AGG 0.556799 7.4:+10749232 None:intergenic
TTTGTCTTCTAAAGACAAAG+AGG 0.558670 7.4:-10750155 MS.gene061865:CDS
ATGAACACAATAGATGGGAC+AGG 0.562692 7.4:-10749159 MS.gene061865:CDS
GAAGGACTATTGGGTGGTGA+AGG 0.565122 7.4:+10749367 None:intergenic
TTGAGGCTCATTGGTTAGTG+AGG 0.568784 7.4:+10749324 None:intergenic
CTATGCTTGGTGTTGGTGAA+GGG 0.569653 7.4:+10749194 None:intergenic
TCCAAGTGCTTCCCATAGTG+TGG 0.571682 7.4:+10748441 None:intergenic
GTAGGATCATTGTGTGGTGA+TGG 0.571721 7.4:+10749289 None:intergenic
CAGTCAGTAATTAGTCCACC+GGG 0.572133 7.4:-10749028 MS.gene061865:CDS
TGAGGCTCATTGGTTAGTGA+GGG 0.573688 7.4:+10749325 None:intergenic
GGTTGTAGAGGATTGAGGCC+TGG 0.573875 7.4:+10749244 None:intergenic
TTGTCTTCTAAAGACAAAGA+GGG 0.575204 7.4:-10750154 MS.gene061865:CDS
TTAGATATTTGTGGAGGACG+AGG 0.576543 7.4:+10748592 None:intergenic
GCAGCTGATGTGAACTCAGA+AGG 0.582169 7.4:-10750484 MS.gene061865:CDS
GTTGGTGAAGGGTCGTCACT+TGG 0.585627 7.4:+10749205 None:intergenic
ATGGCTGAGATTGATGATCA+TGG 0.588724 7.4:-10750265 MS.gene061865:CDS
AAACTCTACTTAGAATTAGA+GGG 0.589124 7.4:+10750602 None:intergenic
GTGGTGGTTGTAGAGGATTG+AGG 0.597688 7.4:+10749239 None:intergenic
TCACTTGGTGAGAATGGTGG+TGG 0.599059 7.4:+10749220 None:intergenic
GATGGTGATTGTGGATGTTG+AGG 0.600949 7.4:+10749307 None:intergenic
TCATTTATCGATGATTGTTG+TGG 0.602451 7.4:+10749445 None:intergenic
TTTGCCGAAGCTAGATGAAG+AGG 0.604364 7.4:+10750454 None:intergenic
ATCCTTGTTGAATCAATGAG+AGG 0.608497 7.4:-10750193 MS.gene061865:CDS
ACAACATGAACACAATAGAT+GGG 0.609468 7.4:-10749164 MS.gene061865:CDS
TCTGGGTTAGGTCTAGGCGC+AGG 0.609783 7.4:-10748616 MS.gene061865:CDS
GAATGTGTAATTTCTTGTGT+AGG 0.616234 7.4:+10749271 None:intergenic
TTGCCGAAGCTAGATGAAGA+GGG 0.617908 7.4:+10750455 None:intergenic
GGTTGTGAAGGACTATTGGG+TGG 0.622829 7.4:+10749361 None:intergenic
GTTAGTGAGGGATTGTGAGA+TGG 0.623672 7.4:+10749337 None:intergenic
GAAGAAGATACAACAAAAGG+TGG 0.625546 7.4:-10748995 MS.gene061865:CDS
GCTGTAATGAGAGGACGCGT+AGG 0.625908 7.4:-10750340 MS.gene061865:CDS
TCGTCACTTGGTGAGAATGG+TGG 0.634283 7.4:+10749217 None:intergenic
TTTAACTTAGATATTTGTGG+AGG 0.636829 7.4:+10748586 None:intergenic
GATTGGACTAGAGTTACTTG+AGG 0.640890 7.4:+10749421 None:intergenic
AACAAATACCTAATAAACCA+AGG 0.645161 7.4:-10749121 MS.gene061865:CDS
TAAAGAAGCTATGTGTAATG+GGG 0.652798 7.4:+10750558 None:intergenic
GAAATTACACATTCATCACC+AGG 0.657014 7.4:-10749262 MS.gene061865:CDS
AAGATCATGTTAACTCACCA+AGG 0.659607 7.4:-10749594 MS.gene061865:CDS
TGTTGTTCTAGTAACTGTCG+AGG 0.660930 7.4:+10749565 None:intergenic
GATGATTGTTGTGGTTGTGG+AGG 0.661128 7.4:+10749454 None:intergenic
TCTTCCCAAACACCGCCCGG+TGG 0.662288 7.4:+10749013 None:intergenic
TCTTGTGTAGGATCATTGTG+TGG 0.698697 7.4:+10749283 None:intergenic
TGAACACAATAGATGGGACA+GGG 0.709494 7.4:-10749158 MS.gene061865:CDS
TTGGATTTAGCTATCAAACG+AGG 0.710414 7.4:-10750121 MS.gene061865:CDS
TCAGTAATTAGTCCACCGGG+CGG 0.788117 7.4:-10749025 MS.gene061865:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAGAAAACTACA+AGG - chr7.4:10749204-10749223 MS.gene061865:CDS 15.0%
!!! AAAATGAATTTAAGATAATC+TGG + chr7.4:10750187-10750206 None:intergenic 15.0%
!! ACTATAAACTTATTATGAAG+AGG + chr7.4:10750271-10750290 None:intergenic 20.0%
!! ATCCAATTATTCATATGAAA+AGG + chr7.4:10749262-10749281 None:intergenic 20.0%
!! ATCTAAGTTAAAAGTAGAAA+AGG - chr7.4:10750517-10750536 MS.gene061865:CDS 20.0%
!! ATTCTATAGAAAATGTGATT+AGG + chr7.4:10750373-10750392 None:intergenic 20.0%
!! TCATAATAAGTTTATAGTGT+GGG - chr7.4:10750273-10750292 MS.gene061865:CDS 20.0%
!! TTCATAATAAGTTTATAGTG+TGG - chr7.4:10750272-10750291 MS.gene061865:CDS 20.0%
!!! AACCTTTTCATATGAATAAT+TGG - chr7.4:10749257-10749276 MS.gene061865:CDS 20.0%
!!! ACTTTTAACTTAGATATTTG+TGG + chr7.4:10750512-10750531 None:intergenic 20.0%
!!! TTTAAGAGCTTTATATATGT+TGG - chr7.4:10749382-10749401 MS.gene061865:CDS 20.0%
!!! TTTCAACAACAGATAAATTT+TGG - chr7.4:10749013-10749032 MS.gene061865:CDS 20.0%
! AAACTCTACTTAGAATTAGA+GGG + chr7.4:10748493-10748512 None:intergenic 25.0%
! AAAGACAAGAGAACAATTAA+TGG - chr7.4:10750009-10750028 MS.gene061865:intron 25.0%
! AACAAATACCTAATAAACCA+AGG - chr7.4:10749971-10749990 MS.gene061865:intron 25.0%
! ATTCATATGAAAAGGTTTCA+AGG + chr7.4:10749254-10749273 None:intergenic 25.0%
! TCAAAATGTGTTGAATTGTA+TGG + chr7.4:10749433-10749452 None:intergenic 25.0%
! TTCATATGAAAAGGTTTCAA+GGG + chr7.4:10749253-10749272 None:intergenic 25.0%
! TTCTATAGAATTCGTGATTT+AGG - chr7.4:10750382-10750401 MS.gene061865:CDS 25.0%
!! TGTTTTCTATAATCATCTAG+AGG - chr7.4:10748868-10748887 MS.gene061865:CDS 25.0%
!! TTTAACTTAGATATTTGTGG+AGG + chr7.4:10750509-10750528 None:intergenic 25.0%
!! TTTTATCTATCCAATAACCT+TGG + chr7.4:10749991-10750010 None:intergenic 25.0%
AAATAGCTAGAATTGTGTTC+TGG - chr7.4:10750458-10750477 MS.gene061865:CDS 30.0%
AACAACATGAACACAATAGA+TGG - chr7.4:10749927-10749946 MS.gene061865:intron 30.0%
AAGCTTAAATTGATAGGAGT+TGG + chr7.4:10750592-10750611 None:intergenic 30.0%
AATAGCTAGAATTGTGTTCT+GGG - chr7.4:10750459-10750478 MS.gene061865:CDS 30.0%
ACAACATGAACACAATAGAT+GGG - chr7.4:10749928-10749947 MS.gene061865:intron 30.0%
ACCTAATAAACCAAGGTTAT+TGG - chr7.4:10749978-10749997 MS.gene061865:intron 30.0%
AGCTTAAATTGATAGGAGTT+GGG + chr7.4:10750591-10750610 None:intergenic 30.0%
AGTAAAGAAGCTATGTGTAA+TGG + chr7.4:10748539-10748558 None:intergenic 30.0%
CACATGAAGCTTAAATTGAT+AGG + chr7.4:10750598-10750617 None:intergenic 30.0%
CTCTATGATGCATCATTAAA+AGG - chr7.4:10748431-10748450 MS.gene061865:CDS 30.0%
GAAACTCTACTTAGAATTAG+AGG + chr7.4:10748494-10748513 None:intergenic 30.0%
GAACAACATTCACAAATCAA+TGG - chr7.4:10749542-10749561 MS.gene061865:CDS 30.0%
GAATGTGTAATTTCTTGTGT+AGG + chr7.4:10749824-10749843 None:intergenic 30.0%
GTAAAGAAGCTATGTGTAAT+GGG + chr7.4:10748538-10748557 None:intergenic 30.0%
GTTATATCTTGGTTGGAATT+TGG - chr7.4:10750404-10750423 MS.gene061865:CDS 30.0%
TAAAGAAGCTATGTGTAATG+GGG + chr7.4:10748537-10748556 None:intergenic 30.0%
TATCAAACGAGGACAAATTA+AGG - chr7.4:10748982-10749001 MS.gene061865:CDS 30.0%
TCATTTATCGATGATTGTTG+TGG + chr7.4:10749650-10749669 None:intergenic 30.0%
TCCAATAACCTTGGTTTATT+AGG + chr7.4:10749982-10750001 None:intergenic 30.0%
TTACACATAGCTTCTTTACT+TGG - chr7.4:10748539-10748558 MS.gene061865:intron 30.0%
! CAAAGAGGGTAACAATATTT+TGG - chr7.4:10748952-10748971 MS.gene061865:CDS 30.0%
! CTTTTAATGATGCATCATAG+AGG + chr7.4:10748433-10748452 None:intergenic 30.0%
! GATTTAGGTTATATCTTGGT+TGG - chr7.4:10750397-10750416 MS.gene061865:CDS 30.0%
! GCATATGCAAATGTAGTTTT+TGG + chr7.4:10750569-10750588 None:intergenic 30.0%
! TAAGTTTATAGTGTGGGTTT+TGG - chr7.4:10750279-10750298 MS.gene061865:CDS 30.0%
! TATGTTGCTTACATACATGT+GGG - chr7.4:10750330-10750349 MS.gene061865:CDS 30.0%
! TCGTGATTTAGGTTATATCT+TGG - chr7.4:10750393-10750412 MS.gene061865:CDS 30.0%
! TTAGAATTAGAGGGTCTTTT+TGG + chr7.4:10748484-10748503 None:intergenic 30.0%
! TTGTCTTCTAAAGACAAAGA+GGG - chr7.4:10748938-10748957 MS.gene061865:CDS 30.0%
! TTTGTCTTCTAAAGACAAAG+AGG - chr7.4:10748937-10748956 MS.gene061865:CDS 30.0%
!! TAAGCTTCATGTGTTGATTT+AGG - chr7.4:10750605-10750624 MS.gene061865:CDS 30.0%
AAGATCATGTTAACTCACCA+AGG - chr7.4:10749498-10749517 MS.gene061865:CDS 35.0%
AGTTGTAGAGGATGACTAAT+CGG + chr7.4:10749698-10749717 None:intergenic 35.0%
ATCCTTGTTGAATCAATGAG+AGG - chr7.4:10748899-10748918 MS.gene061865:CDS 35.0%
GAAAACACACAAGTGCAAAA+TGG + chr7.4:10748855-10748874 None:intergenic 35.0%
GAAATTACACATTCATCACC+AGG - chr7.4:10749830-10749849 MS.gene061865:intron 35.0%
GAAGAAGATACAACAAAAGG+TGG - chr7.4:10750097-10750116 MS.gene061865:intron 35.0%
GCTTCACAAAAACCATAATC+AGG + chr7.4:10750133-10750152 None:intergenic 35.0%
TGCACTTATCAACTCCTTAA+TGG + chr7.4:10748780-10748799 None:intergenic 35.0%
TGGGAAGAAGATACAACAAA+AGG - chr7.4:10750094-10750113 MS.gene061865:intron 35.0%
TGTTGTTCATTAGCTATGCT+TGG + chr7.4:10749914-10749933 None:intergenic 35.0%
TTCATGAAAGAGAGTCATGT+AGG + chr7.4:10750546-10750565 None:intergenic 35.0%
TTGGATTTAGCTATCAAACG+AGG - chr7.4:10748971-10748990 MS.gene061865:CDS 35.0%
! AGCTCTTAAAGCTTCTGTTT+TGG + chr7.4:10749372-10749391 None:intergenic 35.0%
! GATTATGGTTTTTGTGAAGC+AGG - chr7.4:10750133-10750152 MS.gene061865:CDS 35.0%
! GTATGTTGCTTACATACATG+TGG - chr7.4:10750329-10750348 MS.gene061865:CDS 35.0%
! TTTTGTGGAGGATCATTGTT+TGG + chr7.4:10749593-10749612 None:intergenic 35.0%
!! GAAGGATTTGTTAGTTGTAG+AGG + chr7.4:10749710-10749729 None:intergenic 35.0%
!! TCTTAAAGCTTCTGTTTTGG+AGG + chr7.4:10749369-10749388 None:intergenic 35.0%
!!! TGTGATGGTTGTTGATTTTG+TGG + chr7.4:10749608-10749627 None:intergenic 35.0%
AAAATCCTCTGCCACACTAT+GGG - chr7.4:10750640-10750659 MS.gene061865:CDS 40.0%
AACAGAAACTATTCGGGTGA+TGG - chr7.4:10748808-10748827 MS.gene061865:intron 40.0%
ACCCGAATAGTTTCTGTTTC+CGG + chr7.4:10748806-10748825 None:intergenic 40.0%
AGTCTATTGTGACAGACAGA+AGG - chr7.4:10749116-10749135 MS.gene061865:CDS 40.0%
ATCGATGATTGTTGTGGTTG+TGG + chr7.4:10749644-10749663 None:intergenic 40.0%
ATGAACACAATAGATGGGAC+AGG - chr7.4:10749933-10749952 MS.gene061865:intron 40.0%
CTGCAGTTGTAGGATATGTT+TGG - chr7.4:10750158-10750177 MS.gene061865:CDS 40.0%
CTTACATACATGTGGGCATT+GGG - chr7.4:10750337-10750356 MS.gene061865:CDS 40.0%
GTATGGCTAGCAAAATCTCT+TGG + chr7.4:10749416-10749435 None:intergenic 40.0%
GTCCTCTCATTACAGCAAAA+TGG + chr7.4:10748748-10748767 None:intergenic 40.0%
TCAGTCAGTAATTAGTCCAC+CGG - chr7.4:10750063-10750082 MS.gene061865:intron 40.0%
TCTTGTGTAGGATCATTGTG+TGG + chr7.4:10749812-10749831 None:intergenic 40.0%
TGAACACAATAGATGGGACA+GGG - chr7.4:10749934-10749953 MS.gene061865:intron 40.0%
TGCCGGAAACAGAAACTATT+CGG - chr7.4:10748801-10748820 MS.gene061865:intron 40.0%
TGTTGTTCTAGTAACTGTCG+AGG + chr7.4:10749530-10749549 None:intergenic 40.0%
TTAGATATTTGTGGAGGACG+AGG + chr7.4:10750503-10750522 None:intergenic 40.0%
TTCACATCAGCTGCTAAGTT+GGG + chr7.4:10748602-10748621 None:intergenic 40.0%
! ATGGCTGAGATTGATGATCA+TGG - chr7.4:10748827-10748846 MS.gene061865:intron 40.0%
! CTAGAATTGTGTTCTGGGTT+AGG - chr7.4:10750464-10750483 MS.gene061865:CDS 40.0%
! GATTGGACTAGAGTTACTTG+AGG + chr7.4:10749674-10749693 None:intergenic 40.0%
! GGAGGATCAATGTTTTGTGA+TGG + chr7.4:10749623-10749642 None:intergenic 40.0%
! TGCATCACTATGTGTGCTTT+TGG - chr7.4:10750228-10750247 MS.gene061865:CDS 40.0%
! TGTAATGGGGTTTCAGAGAA+TGG + chr7.4:10748524-10748543 None:intergenic 40.0%
! TTCATCTAGCTTCGGCAAAA+GGG - chr7.4:10748642-10748661 MS.gene061865:intron 40.0%
!! CTCCATTTTGCTGTAATGAG+AGG - chr7.4:10748743-10748762 MS.gene061865:intron 40.0%
!! CTCCTCTCATTGATTCAACA+AGG + chr7.4:10748904-10748923 None:intergenic 40.0%
!! GTTTATAGTGTGGGTTTTGG+CGG - chr7.4:10750282-10750301 MS.gene061865:CDS 40.0%
!! TCATTAGCTATGCTTGGTGT+TGG + chr7.4:10749908-10749927 None:intergenic 40.0%
!!! GATGGTTGTTGATTTTGTGG+AGG + chr7.4:10749605-10749624 None:intergenic 40.0%
AACTGTCGAGGATCATTCCT+TGG + chr7.4:10749518-10749537 None:intergenic 45.0%
CAGTCAGTAATTAGTCCACC+GGG - chr7.4:10750064-10750083 MS.gene061865:intron 45.0%
GAAAATCCTCTGCCACACTA+TGG - chr7.4:10750639-10750658 MS.gene061865:CDS 45.0%
GAGGATGACTAATCGGTGAT+TGG + chr7.4:10749691-10749710 None:intergenic 45.0%
GATGATTGTTGTGGTTGTGG+AGG + chr7.4:10749641-10749660 None:intergenic 45.0%
GATGGTGATTGTGGATGTTG+AGG + chr7.4:10749788-10749807 None:intergenic 45.0%
GCCGGAAACAGAAACTATTC+GGG - chr7.4:10748802-10748821 MS.gene061865:intron 45.0%
GCTTACATACATGTGGGCAT+TGG - chr7.4:10750336-10750355 MS.gene061865:CDS 45.0%
GGTGGTTGTGAAGGACTATT+GGG + chr7.4:10749737-10749756 None:intergenic 45.0%
GGTTACGCTTGTCCTGATTA+TGG - chr7.4:10750118-10750137 MS.gene061865:CDS 45.0%
GTAGGATCATTGTGTGGTGA+TGG + chr7.4:10749806-10749825 None:intergenic 45.0%
GTTAGTGAGGGATTGTGAGA+TGG + chr7.4:10749758-10749777 None:intergenic 45.0%
GTTCACATCAGCTGCTAAGT+TGG + chr7.4:10748603-10748622 None:intergenic 45.0%
TCGCGAATCAAGCAAGTTTC+TGG + chr7.4:10748704-10748723 None:intergenic 45.0%
TGGTGGTTGTGAAGGACTAT+TGG + chr7.4:10749738-10749757 None:intergenic 45.0%
TTGCCGAAGCTAGATGAAGA+GGG + chr7.4:10748640-10748659 None:intergenic 45.0%
TTGTGGATGTTGAGGCTCAT+TGG + chr7.4:10749780-10749799 None:intergenic 45.0%
TTTGCCGAAGCTAGATGAAG+AGG + chr7.4:10748641-10748660 None:intergenic 45.0%
! CTTCATCTAGCTTCGGCAAA+AGG - chr7.4:10748641-10748660 MS.gene061865:intron 45.0%
! GTGGCAGAGGATTTTCAGAA+AGG + chr7.4:10750635-10750654 None:intergenic 45.0%
! TGAGGCTCATTGGTTAGTGA+GGG + chr7.4:10749770-10749789 None:intergenic 45.0%
! TTGAGGCTCATTGGTTAGTG+AGG + chr7.4:10749771-10749790 None:intergenic 45.0%
! TTGCCCTCTTCATCTAGCTT+CGG - chr7.4:10748634-10748653 MS.gene061865:intron 45.0%
! TTGTGAGATGGTGGTTGTGA+AGG + chr7.4:10749746-10749765 None:intergenic 45.0%
! TTGTGTTCTGGGTTAGGTCT+AGG - chr7.4:10750470-10750489 MS.gene061865:CDS 45.0%
!! CTATGCTTGGTGTTGGTGAA+GGG + chr7.4:10749901-10749920 None:intergenic 45.0%
!! GGAGTTGATAAGTGCAATGC+CGG - chr7.4:10748784-10748803 MS.gene061865:intron 45.0%
!! TTGTGTGGTGATGGTGATTG+TGG + chr7.4:10749797-10749816 None:intergenic 45.0%
!!! GTGCTTTTGGTTCTCGTAAG+TGG - chr7.4:10750241-10750260 MS.gene061865:CDS 45.0%
AGGACGCGTAGGAACCATTA+AGG - chr7.4:10748763-10748782 MS.gene061865:intron 50.0%
AGTGAGGGATTGTGAGATGG+TGG + chr7.4:10749755-10749774 None:intergenic 50.0%
GAAGCAGGAACTGCAGTTGT+AGG - chr7.4:10750148-10750167 MS.gene061865:CDS 50.0%
GAAGGACTATTGGGTGGTGA+AGG + chr7.4:10749728-10749747 None:intergenic 50.0%
GCAGCTGATGTGAACTCAGA+AGG - chr7.4:10748608-10748627 MS.gene061865:CDS 50.0%
GGTTGTGAAGGACTATTGGG+TGG + chr7.4:10749734-10749753 None:intergenic 50.0%
GTGGTGGTTGTAGAGGATTG+AGG + chr7.4:10749856-10749875 None:intergenic 50.0%
TCAGTAATTAGTCCACCGGG+CGG - chr7.4:10750067-10750086 MS.gene061865:intron 50.0%
TCCAAGTGCTTCCCATAGTG+TGG + chr7.4:10750654-10750673 None:intergenic 50.0%
! TCACTTGGTGAGAATGGTGG+TGG + chr7.4:10749875-10749894 None:intergenic 50.0%
! TCGTCACTTGGTGAGAATGG+TGG + chr7.4:10749878-10749897 None:intergenic 50.0%
!! AATGGTGGTGGTGGTTGTAG+AGG + chr7.4:10749863-10749882 None:intergenic 50.0%
!! GCTATGCTTGGTGTTGGTGA+AGG + chr7.4:10749902-10749921 None:intergenic 50.0%
GCTGTAATGAGAGGACGCGT+AGG - chr7.4:10748752-10748771 MS.gene061865:intron 55.0%
GGTTGTAGAGGATTGAGGCC+TGG + chr7.4:10749851-10749870 None:intergenic 55.0%
TCTTCTTCCCAAACACCGCC+CGG + chr7.4:10750085-10750104 None:intergenic 55.0%
TGCTTCCCATAGTGTGGCAG+AGG + chr7.4:10750648-10750667 None:intergenic 55.0%
! GGGTCGTCACTTGGTGAGAA+TGG + chr7.4:10749881-10749900 None:intergenic 55.0%
! GTTGGTGAAGGGTCGTCACT+TGG + chr7.4:10749890-10749909 None:intergenic 55.0%
!! CTTGGTGAGAATGGTGGTGG+TGG + chr7.4:10749872-10749891 None:intergenic 55.0%
!! GCCACACTATGGGAAGCACT+TGG - chr7.4:10750650-10750669 MS.gene061865:CDS 55.0%
TAGTCCACCGGGCGGTGTTT+GGG - chr7.4:10750075-10750094 MS.gene061865:intron 60.0%
TTAGTCCACCGGGCGGTGTT+TGG - chr7.4:10750074-10750093 MS.gene061865:intron 60.0%
! TCTGGGTTAGGTCTAGGCGC+AGG - chr7.4:10750476-10750495 MS.gene061865:CDS 60.0%
TCTTCCCAAACACCGCCCGG+TGG + chr7.4:10750082-10750101 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 10748422 10750692 10748422 ID=MS.gene061865
chr7.4 mRNA 10748422 10750692 10748422 ID=MS.gene061865.t1;Parent=MS.gene061865
chr7.4 exon 10750111 10750692 10750111 ID=MS.gene061865.t1.exon1;Parent=MS.gene061865.t1
chr7.4 CDS 10750111 10750692 10750111 ID=cds.MS.gene061865.t1;Parent=MS.gene061865.t1
chr7.4 exon 10748859 10749797 10748859 ID=MS.gene061865.t1.exon2;Parent=MS.gene061865.t1
chr7.4 CDS 10748859 10749797 10748859 ID=cds.MS.gene061865.t1;Parent=MS.gene061865.t1
chr7.4 exon 10748576 10748650 10748576 ID=MS.gene061865.t1.exon3;Parent=MS.gene061865.t1
chr7.4 CDS 10748576 10748650 10748576 ID=cds.MS.gene061865.t1;Parent=MS.gene061865.t1
chr7.4 exon 10748422 10748487 10748422 ID=MS.gene061865.t1.exon4;Parent=MS.gene061865.t1
chr7.4 CDS 10748422 10748487 10748422 ID=cds.MS.gene061865.t1;Parent=MS.gene061865.t1
Gene Sequence

>MS.gene061865

ATGAGAAACCTCTATGATGCATCATTAAAAGGATGTGTGATTAGCTTAAAAGCACTTATCCAAAAAGACCCTCTAATTCTAAGTAGAGTTTCACTCTCTCCATTCTCTGAAACCCCATTACACATAGCTTCTTTACTTGGACATTTAGAATTAAGTCAAATTCTTCTTGACATAAATCCCAACTTAGCAGCTGATGTGAACTCAGAAGGACATTGCCCTCTTCATCTAGCTTCGGCAAAAGGGCACATTGAAATAGTGAAAGCTTTGTTGTTGACAGATCCAGAAACTTGCTTGATTCGCGACAAAGATGACAAACTTTCTCTCCATTTTGCTGTAATGAGAGGACGCGTAGGAACCATTAAGGAGTTGATAAGTGCAATGCCGGAAACAGAAACTATTCGGGTGATGGCTGAGATTGATGATCATGGTTCCATTTTGCACTTGTGTGTTTTCTATAATCATCTAGAGGCATTGAAAATCCTTGTTGAATCAATGAGAGGAGACATTGATCAATTTTTGTCTTCTAAAGACAAAGAGGGTAACAATATTTTGGATTTAGCTATCAAACGAGGACAAATTAAGGTAATGTTTTTTCAACAACAGATAAATTTTGGATTTGCTCACTTTCTAAAAATATTTTCAATTTACAATTTAAAAATCTGAATTCATTTTAAACTGCTAACAATAAGATGAAAGTCTATTGTGACAGACAGAAGGTGAAAGACTTTTTAAGTAGAATACATTTTTAAAAATAATGAAAACAATGTTTTCACATTTTCAAAAATTATAAAAGAAAACTACAAGGAAAATACTGAATCTTGTTTTGAGCCCTTGAAACCTTTTCATATGAATAATTGGATTAAACATTAGTAACAACTTTTATATAACTTTGCAGATCATAAAGTACTTGCTCTCACTATCTGAAATGAGTGAGACAATAAATACCTCCAAAACAGAAGCTTTAAGAGCTTTATATATGTTGGAGCATAGTCCAAGAGATTTTGCTAGCCATACAATTCAACACATTTTGACTGAAGAAAGAGCTCAAACATCTACAAATATAGTTATTGCTCAACAAGATCATGTTAACTCACCAAGGAATGATCCTCGACAGTTACTAGAACAACATTCACAAATCAATGGTCATGAACAATCACAAACTTCATCACCAAACAATGATCCTCCACAAAATCAACAACCATCACAAAACATTGATCCTCCACAACCACAACAATCATCGATAAATGATCCTCAAGTAACTCTAGTCCAATCACCGATTAGTCATCCTCTACAACTAACAAATCCTTCACCACCCAATAGTCCTTCACAACCACCATCTCACAATCCCTCACTAACCAATGAGCCTCAACATCCACAATCACCATCACCACACAATGATCCTACACAAGAAATTACACATTCATCACCAGGCCTCAATCCTCTACAACCACCACCACCATTCTCACCAAGTGACGACCCTTCACCAACACCAAGCATAGCTAATGAACAACATGAACACAATAGATGGGACAGGGTTGAGAGTTTCTGCAACAAATACCTAATAAACCAAGGTTATTGGATAGATAAAAAGACAAGAGAACAATTAATGGTAGCAGCAACTGTGATTGCAACTATGACTTTTCAGTCAGTAATTAGTCCACCGGGCGGTGTTTGGGAAGAAGATACAACAAAAGGTGGTTACGCTTGTCCTGATTATGGTTTTTGTGAAGCAGGAACTGCAGTTGTAGGATATGTTTGGTCACCAGATTATCTTAAATTCATTTTCTTCAACTCTGCTTCTTTCTTTGCATCACTATGTGTGCTTTTGGTTCTCGTAAGTGGATTTCCTCTTCATAATAAGTTTATAGTGTGGGTTTTGGCGGTTTTGATGATAGTTGCAATCACATGTATGTTGCTTACATACATGTGGGCATTGGGATTAATTAGTCCTAATCACATTTTCTATAGAATTCGTGATTTAGGTTATATCTTGGTTGGAATTTGGTCTTTCTTACTTTTTGTTGTTTGTTTGATTCAAATAGCTAGAATTGTGTTCTGGGTTAGGTCTAGGCGCAGGTCCTCGTCCTCCACAAATATCTAAGTTAAAAGTAGAAAAGGTTGCCTACATGACTCTCTTTCATGAACCAAAAACTACATTTGCATATGCCCAACTCCTATCAATTTAAGCTTCATGTGTTGATTTAGGATATCCTTTCTGAAAATCCTCTGCCACACTATGGGAAGCACTTGGAGAAGTGCGATGATTCATAA

Protein sequence

>MS.gene061865.t1

MRNLYDASLKGCVISLKALIQKDPLILSRVSLSPFSETPLHIASLLGHLELSQILLDINPNLAADVNSEGHCPLHLASAKGHIEIVKALLLTDPETCLIRDKDDKLSLHFAVMRGRVGTIKELISAMPETETIRVMAEIDDHGSILHLCVFYNHLEALKILVESMRGDIDQFLSSKDKEGNNILDLAIKRGQIKIIKYLLSLSEMSETINTSKTEALRALYMLEHSPRDFASHTIQHILTEERAQTSTNIVIAQQDHVNSPRNDPRQLLEQHSQINGHEQSQTSSPNNDPPQNQQPSQNIDPPQPQQSSINDPQVTLVQSPISHPLQLTNPSPPNSPSQPPSHNPSLTNEPQHPQSPSPHNDPTQEITHSSPGLNPLQPPPPFSPSDDPSPTPSIANEQHEHNRWDRVESFCNKYLINQGYWIDKKTREQLMVAATVIATMTFQSVISPPGGVWEEDTTKGGYACPDYGFCEAGTAVVGYVWSPDYLKFIFFNSASFFASLCVLLVLLELCSGLGLGAGPRPPQISKLKVEKDILSENPLPHYGKHLEKCDDS