AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061868


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061868.t1 MTR_7g099570 94.499 509 27 1 1 508 6 514 0.0 897
MS.gene061868.t1 MTR_7g099580 68.205 195 61 1 1 194 9 203 5.92e-86 270
MS.gene061868.t1 MTR_7g099580 78.723 47 10 0 419 465 238 284 5.81e-17 82.8
MS.gene061868.t1 MTR_1g069110 37.901 343 158 5 1 339 15 306 2.04e-58 201
MS.gene061868.t1 MTR_1g069110 50.000 128 60 2 381 508 236 359 5.37e-34 134
MS.gene061868.t1 MTR_7g099550 57.143 105 40 1 63 167 136 235 2.95e-29 116
MS.gene061868.t1 MTR_2g101320 25.231 432 247 10 32 461 134 491 1.45e-23 105
MS.gene061868.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 1.92e-21 98.6
MS.gene061868.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 2.65e-21 97.8
MS.gene061868.t1 MTR_7g021090 28.251 223 146 3 4 217 9 226 8.09e-20 92.4
MS.gene061868.t1 MTR_1g059930 30.526 190 118 4 4 184 12 196 3.65e-19 90.5
MS.gene061868.t1 MTR_8g072510 29.834 181 113 3 16 187 22 197 5.81e-18 87.0
MS.gene061868.t1 MTR_8g073260 28.571 203 131 5 7 200 14 211 6.52e-18 87.0
MS.gene061868.t1 MTR_8g068990 28.378 222 134 3 7 220 15 219 8.95e-18 86.7
MS.gene061868.t1 MTR_3g016210 29.834 181 113 4 16 187 22 197 1.07e-17 86.3
MS.gene061868.t1 MTR_8g062410 30.102 196 123 3 4 190 10 200 3.00e-17 84.7
MS.gene061868.t1 MTR_8g069880 31.579 190 116 4 7 187 10 194 3.48e-17 84.7
MS.gene061868.t1 MTR_8g039620 27.536 207 136 3 4 201 14 215 2.82e-16 81.6
MS.gene061868.t1 MTR_1g115575 28.082 292 177 10 4 287 135 401 4.79e-16 81.6
MS.gene061868.t1 MTR_7g451420 30.000 190 119 3 7 187 12 196 5.18e-16 79.7
MS.gene061868.t1 MTR_7g100390 30.542 203 125 5 2 199 82 273 1.03e-15 80.5
MS.gene061868.t1 MTR_8g467780 30.159 189 118 3 7 186 14 197 1.42e-14 76.6
MS.gene061868.t1 MTR_2g096190 29.902 204 127 5 2 200 99 291 2.49e-14 76.3
MS.gene061868.t1 MTR_3g105650 28.022 182 117 3 16 188 17 193 5.82e-14 74.3
MS.gene061868.t1 MTR_4g062100 28.063 253 155 7 4 250 74 305 7.76e-14 74.7
MS.gene061868.t1 MTR_1g032100 27.700 213 142 5 39 250 94 295 1.25e-13 73.9
MS.gene061868.t1 MTR_8g066670 24.436 266 177 6 16 264 1087 1345 4.69e-13 72.8
MS.gene061868.t1 MTR_8g105260 27.230 213 143 5 39 250 101 302 6.05e-13 71.6
MS.gene061868.t1 MTR_7g100430 26.275 255 162 6 39 289 161 393 8.82e-12 68.2
MS.gene061868.t1 MTR_7g117620 37.391 115 66 2 2 112 114 226 2.07e-11 67.0
MS.gene061868.t1 MTR_7g117620 25.359 209 117 5 37 214 82 282 9.12e-11 64.7
MS.gene061868.t1 MTR_7g087540 51.471 68 29 4 414 480 25 89 2.44e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061868.t1 AT4G10720 29.961 257 162 8 4 250 5 253 9.84e-21 95.1
MS.gene061868.t1 AT5G54610 32.569 218 134 5 11 220 12 224 1.25e-20 95.1
MS.gene061868.t1 AT4G10720 29.961 257 162 8 4 250 5 253 2.18e-20 94.4
MS.gene061868.t1 AT5G54620 30.876 217 136 4 2 209 3 214 4.55e-20 93.2
MS.gene061868.t1 AT1G14480 29.612 206 131 5 4 200 5 205 1.52e-17 85.9
MS.gene061868.t1 AT5G51160 30.612 196 116 6 65 250 42 227 4.27e-17 84.3
MS.gene061868.t1 AT5G15500 25.993 277 184 6 2 262 4 275 7.85e-17 83.6
MS.gene061868.t1 AT2G31820 32.843 204 118 6 4 202 193 382 9.72e-17 84.0
MS.gene061868.t1 AT1G14500 28.079 203 132 3 7 200 8 205 1.72e-16 82.4
MS.gene061868.t1 AT1G14480 31.707 164 103 3 4 163 5 163 2.72e-16 81.6
MS.gene061868.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene061868.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene061868.t1 AT3G12360 27.891 294 175 10 4 287 133 399 2.75e-13 73.2
MS.gene061868.t1 AT3G12360 27.891 294 175 10 4 287 121 387 2.89e-13 72.8
MS.gene061868.t1 AT5G60070 29.048 210 100 6 2 206 106 271 4.84e-13 72.0
MS.gene061868.t1 AT3G13950 39.655 116 65 3 397 508 4 118 9.04e-13 68.2
MS.gene061868.t1 AT5G50140 23.894 339 213 12 35 353 26 339 1.05e-12 70.9
MS.gene061868.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061868.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061868.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061868.t1 AT1G05640 29.317 249 144 8 39 282 191 412 4.17e-12 69.3
MS.gene061868.t1 AT3G09550 25.597 293 187 9 4 289 154 422 1.52e-11 67.4
MS.gene061868.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4
MS.gene061868.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4

Find 113 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAGGGTAACAATATTT+TGG 0.140494 7.4:-10736512 MS.gene061868:CDS
TCGCGAATCAAGCAAGTTTC+TGG 0.144507 7.4:+10736763 None:intergenic
TGCACTTATCAACTCCTTAA+TGG 0.167211 7.4:+10736687 None:intergenic
TCCAATAACCTTGGTTTATT+AGG 0.187112 7.4:+10735485 None:intergenic
ACCTAATAAACCAAGGTTAT+TGG 0.210805 7.4:-10735486 MS.gene061868:CDS
CTCTATGATGCATCATTAAA+AGG 0.232530 7.4:-10737033 MS.gene061868:CDS
ACCCGAATAGTTTCTGTTTC+CGG 0.272426 7.4:+10736661 None:intergenic
AACAACATGAACACAATAGA+TGG 0.289553 7.4:-10735537 MS.gene061868:CDS
AAAGACAAGAGAACAATTAA+TGG 0.291148 7.4:-10735455 MS.gene061868:CDS
TGCATCACTATGTGTGCTTT+TGG 0.293332 7.4:-10735236 MS.gene061868:CDS
GGTTACGCTTGTCCTGATTA+TGG 0.311723 7.4:-10735346 MS.gene061868:CDS
GTAAAGAAGCTATGTGTAAT+GGG 0.322353 7.4:+10736929 None:intergenic
GAAAATCCTCTGCCACACTA+TGG 0.322481 7.4:-10734825 MS.gene061868:CDS
TATCAAACGAGGACAAATTA+AGG 0.325515 7.4:-10736482 MS.gene061868:intron
AGCTCTTAAAGCTTCTGTTT+TGG 0.341636 7.4:+10736095 None:intergenic
TGCCGGAAACAGAAACTATT+CGG 0.348258 7.4:-10736663 MS.gene061868:CDS
CTAGAATTGTGTTCTGGGTT+AGG 0.351230 7.4:-10735000 MS.gene061868:CDS
GAAAACACACAAGTGCAAAA+TGG 0.355298 7.4:+10736612 None:intergenic
AAATAGCTAGAATTGTGTTC+TGG 0.368470 7.4:-10735006 MS.gene061868:intron
TTAGTCCACCGGGCGGTGTT+TGG 0.379011 7.4:-10735390 MS.gene061868:CDS
AAAATGAATTTAAGATAATC+TGG 0.381714 7.4:+10735280 None:intergenic
TAGTCCACCGGGCGGTGTTT+GGG 0.381761 7.4:-10735389 MS.gene061868:CDS
TTACACATAGCTTCTTTACT+TGG 0.383128 7.4:-10736925 MS.gene061868:CDS
TGGTGGTTGTGAAGGACTAT+TGG 0.387197 7.4:+10735729 None:intergenic
CTTCATCTAGCTTCGGCAAA+AGG 0.398211 7.4:-10736823 MS.gene061868:CDS
GTCCTCTCATTACAGCAAAA+TGG 0.410295 7.4:+10736719 None:intergenic
GAAACTCTACTTAGAATTAG+AGG 0.414613 7.4:+10736973 None:intergenic
GGTGGTTGTGAAGGACTATT+GGG 0.420600 7.4:+10735730 None:intergenic
AGGACGCGTAGGAACCATTA+AGG 0.421682 7.4:-10736701 MS.gene061868:CDS
AATAGCTAGAATTGTGTTCT+GGG 0.426330 7.4:-10735005 MS.gene061868:intron
TTCACATCAGCTGCTAAGTT+GGG 0.430939 7.4:+10736865 None:intergenic
AGTAAAGAAGCTATGTGTAA+TGG 0.433633 7.4:+10736928 None:intergenic
ATCGATGATTGTTGTGGTTG+TGG 0.434864 7.4:+10735823 None:intergenic
TTGTGTTCTGGGTTAGGTCT+AGG 0.438558 7.4:-10734994 MS.gene061868:CDS
TTTAAGAGCTTTATATATGT+TGG 0.440411 7.4:-10736082 MS.gene061868:CDS
CTGCAGTTGTAGGATATGTT+TGG 0.441485 7.4:-10735306 MS.gene061868:CDS
TGTAATGGGGTTTCAGAGAA+TGG 0.449861 7.4:+10736943 None:intergenic
GTTCACATCAGCTGCTAAGT+TGG 0.450012 7.4:+10736864 None:intergenic
ATCTAAGTTAAAAGTAGAAA+AGG 0.458916 7.4:-10734947 MS.gene061868:intron
TTGTGTGGTGATGGTGATTG+TGG 0.460725 7.4:+10735670 None:intergenic
AGTTGTAGAGGATGACTAAT+CGG 0.467947 7.4:+10735769 None:intergenic
TTGCCCTCTTCATCTAGCTT+CGG 0.469951 7.4:-10736830 MS.gene061868:CDS
TGTTGTTCATTAGCTATGCT+TGG 0.473040 7.4:+10735553 None:intergenic
GCCGGAAACAGAAACTATTC+GGG 0.478264 7.4:-10736662 MS.gene061868:CDS
GAAGCAGGAACTGCAGTTGT+AGG 0.479785 7.4:-10735316 MS.gene061868:CDS
TCATTAGCTATGCTTGGTGT+TGG 0.483018 7.4:+10735559 None:intergenic
TTGTGGATGTTGAGGCTCAT+TGG 0.485922 7.4:+10735687 None:intergenic
TTCATCTAGCTTCGGCAAAA+GGG 0.485961 7.4:-10736822 MS.gene061868:CDS
TCAGTCAGTAATTAGTCCAC+CGG 0.487845 7.4:-10735401 MS.gene061868:CDS
GTATGGCTAGCAAAATCTCT+TGG 0.489498 7.4:+10736051 None:intergenic
GAGGATGACTAATCGGTGAT+TGG 0.491854 7.4:+10735776 None:intergenic
TCAAAATGTGTTGAATTGTA+TGG 0.493536 7.4:+10736034 None:intergenic
GCTATGCTTGGTGTTGGTGA+AGG 0.497302 7.4:+10735565 None:intergenic
GGGTCGTCACTTGGTGAGAA+TGG 0.511325 7.4:+10735586 None:intergenic
AAAATCCTCTGCCACACTAT+GGG 0.517000 7.4:-10734824 MS.gene061868:CDS
GAAGGATTTGTTAGTTGTAG+AGG 0.529973 7.4:+10735757 None:intergenic
AACTGTCGAGGATCATTCCT+TGG 0.530579 7.4:+10735949 None:intergenic
GGAGTTGATAAGTGCAATGC+CGG 0.532038 7.4:-10736680 MS.gene061868:CDS
TGCTTCCCATAGTGTGGCAG+AGG 0.532654 7.4:+10734819 None:intergenic
GAACAACATTCACAAATCAA+TGG 0.538302 7.4:-10735922 MS.gene061868:CDS
TTGTGAGATGGTGGTTGTGA+AGG 0.538920 7.4:+10735721 None:intergenic
AGTGAGGGATTGTGAGATGG+TGG 0.541315 7.4:+10735712 None:intergenic
CTTGGTGAGAATGGTGGTGG+TGG 0.543098 7.4:+10735595 None:intergenic
TGGGAAGAAGATACAACAAA+AGG 0.543938 7.4:-10735370 MS.gene061868:CDS
CTCCTCTCATTGATTCAACA+AGG 0.545286 7.4:+10736563 None:intergenic
AACAGAAACTATTCGGGTGA+TGG 0.549369 7.4:-10736656 MS.gene061868:CDS
TCTTCTTCCCAAACACCGCC+CGG 0.555882 7.4:+10735382 None:intergenic
GCCACACTATGGGAAGCACT+TGG 0.556613 7.4:-10734814 MS.gene061868:CDS
AATGGTGGTGGTGGTTGTAG+AGG 0.556799 7.4:+10735604 None:intergenic
TTTGTCTTCTAAAGACAAAG+AGG 0.558670 7.4:-10736527 MS.gene061868:CDS
ATGAACACAATAGATGGGAC+AGG 0.562692 7.4:-10735531 MS.gene061868:CDS
GAAGGACTATTGGGTGGTGA+AGG 0.565122 7.4:+10735739 None:intergenic
TTGAGGCTCATTGGTTAGTG+AGG 0.568784 7.4:+10735696 None:intergenic
CTATGCTTGGTGTTGGTGAA+GGG 0.569653 7.4:+10735566 None:intergenic
TCCAAGTGCTTCCCATAGTG+TGG 0.571682 7.4:+10734813 None:intergenic
GTAGGATCATTGTGTGGTGA+TGG 0.571721 7.4:+10735661 None:intergenic
CAGTCAGTAATTAGTCCACC+GGG 0.572133 7.4:-10735400 MS.gene061868:CDS
TGAGGCTCATTGGTTAGTGA+GGG 0.573688 7.4:+10735697 None:intergenic
GGTTGTAGAGGATTGAGGCC+TGG 0.573875 7.4:+10735616 None:intergenic
TTGTCTTCTAAAGACAAAGA+GGG 0.575204 7.4:-10736526 MS.gene061868:CDS
TTAGATATTTGTGGAGGACG+AGG 0.576543 7.4:+10734964 None:intergenic
GCAGCTGATGTGAACTCAGA+AGG 0.582169 7.4:-10736856 MS.gene061868:CDS
GTTGGTGAAGGGTCGTCACT+TGG 0.585627 7.4:+10735577 None:intergenic
ATGGCTGAGATTGATGATCA+TGG 0.588724 7.4:-10736637 MS.gene061868:CDS
AAACTCTACTTAGAATTAGA+GGG 0.589124 7.4:+10736974 None:intergenic
GTGGTGGTTGTAGAGGATTG+AGG 0.597688 7.4:+10735611 None:intergenic
TCACTTGGTGAGAATGGTGG+TGG 0.599059 7.4:+10735592 None:intergenic
GATGGTGATTGTGGATGTTG+AGG 0.600949 7.4:+10735679 None:intergenic
TCATTTATCGATGATTGTTG+TGG 0.602451 7.4:+10735817 None:intergenic
TTTGCCGAAGCTAGATGAAG+AGG 0.604364 7.4:+10736826 None:intergenic
ATCCTTGTTGAATCAATGAG+AGG 0.608497 7.4:-10736565 MS.gene061868:CDS
ACAACATGAACACAATAGAT+GGG 0.609468 7.4:-10735536 MS.gene061868:CDS
TCTGGGTTAGGTCTAGGCGC+AGG 0.609783 7.4:-10734988 MS.gene061868:CDS
GAATGTGTAATTTCTTGTGT+AGG 0.616234 7.4:+10735643 None:intergenic
TTGCCGAAGCTAGATGAAGA+GGG 0.617908 7.4:+10736827 None:intergenic
GGTTGTGAAGGACTATTGGG+TGG 0.622829 7.4:+10735733 None:intergenic
GTTAGTGAGGGATTGTGAGA+TGG 0.623672 7.4:+10735709 None:intergenic
GAAGAAGATACAACAAAAGG+TGG 0.625546 7.4:-10735367 MS.gene061868:CDS
GCTGTAATGAGAGGACGCGT+AGG 0.625908 7.4:-10736712 MS.gene061868:CDS
TCGTCACTTGGTGAGAATGG+TGG 0.634283 7.4:+10735589 None:intergenic
TTTAACTTAGATATTTGTGG+AGG 0.636829 7.4:+10734958 None:intergenic
GATTGGACTAGAGTTACTTG+AGG 0.640890 7.4:+10735793 None:intergenic
AACAAATACCTAATAAACCA+AGG 0.645161 7.4:-10735493 MS.gene061868:CDS
TAAAGAAGCTATGTGTAATG+GGG 0.652798 7.4:+10736930 None:intergenic
GAAATTACACATTCATCACC+AGG 0.657014 7.4:-10735634 MS.gene061868:CDS
AAGATCATGTTAACTCACCA+AGG 0.659607 7.4:-10735966 MS.gene061868:CDS
TGTTGTTCTAGTAACTGTCG+AGG 0.660930 7.4:+10735937 None:intergenic
GATGATTGTTGTGGTTGTGG+AGG 0.661128 7.4:+10735826 None:intergenic
TCTTCCCAAACACCGCCCGG+TGG 0.662288 7.4:+10735385 None:intergenic
TCTTGTGTAGGATCATTGTG+TGG 0.698697 7.4:+10735655 None:intergenic
TGAACACAATAGATGGGACA+GGG 0.709494 7.4:-10735530 MS.gene061868:CDS
TTGGATTTAGCTATCAAACG+AGG 0.710414 7.4:-10736493 MS.gene061868:CDS
TCAGTAATTAGTCCACCGGG+CGG 0.788117 7.4:-10735397 MS.gene061868:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAGAAAACTACA+AGG - chr7.4:10735576-10735595 MS.gene061868:CDS 15.0%
!!! AAAATGAATTTAAGATAATC+TGG + chr7.4:10736559-10736578 None:intergenic 15.0%
!! ACTATAAACTTATTATGAAG+AGG + chr7.4:10736643-10736662 None:intergenic 20.0%
!! ATCCAATTATTCATATGAAA+AGG + chr7.4:10735634-10735653 None:intergenic 20.0%
!! ATCTAAGTTAAAAGTAGAAA+AGG - chr7.4:10736889-10736908 MS.gene061868:CDS 20.0%
!! ATTCTATAGAAAATGTGATT+AGG + chr7.4:10736745-10736764 None:intergenic 20.0%
!! TCATAATAAGTTTATAGTGT+GGG - chr7.4:10736645-10736664 MS.gene061868:CDS 20.0%
!! TTCATAATAAGTTTATAGTG+TGG - chr7.4:10736644-10736663 MS.gene061868:CDS 20.0%
!!! AACCTTTTCATATGAATAAT+TGG - chr7.4:10735629-10735648 MS.gene061868:CDS 20.0%
!!! ACTTTTAACTTAGATATTTG+TGG + chr7.4:10736884-10736903 None:intergenic 20.0%
!!! TTTAAGAGCTTTATATATGT+TGG - chr7.4:10735754-10735773 MS.gene061868:CDS 20.0%
!!! TTTCAACAACAGATAAATTT+TGG - chr7.4:10735385-10735404 MS.gene061868:CDS 20.0%
! AAACTCTACTTAGAATTAGA+GGG + chr7.4:10734865-10734884 None:intergenic 25.0%
! AAAGACAAGAGAACAATTAA+TGG - chr7.4:10736381-10736400 MS.gene061868:intron 25.0%
! AACAAATACCTAATAAACCA+AGG - chr7.4:10736343-10736362 MS.gene061868:intron 25.0%
! ATTCATATGAAAAGGTTTCA+AGG + chr7.4:10735626-10735645 None:intergenic 25.0%
! TCAAAATGTGTTGAATTGTA+TGG + chr7.4:10735805-10735824 None:intergenic 25.0%
! TTCATATGAAAAGGTTTCAA+GGG + chr7.4:10735625-10735644 None:intergenic 25.0%
! TTCTATAGAATTCGTGATTT+AGG - chr7.4:10736754-10736773 MS.gene061868:CDS 25.0%
!! TGTTTTCTATAATCATCTAG+AGG - chr7.4:10735240-10735259 MS.gene061868:CDS 25.0%
!! TTTAACTTAGATATTTGTGG+AGG + chr7.4:10736881-10736900 None:intergenic 25.0%
!! TTTTATCTATCCAATAACCT+TGG + chr7.4:10736363-10736382 None:intergenic 25.0%
AAATAGCTAGAATTGTGTTC+TGG - chr7.4:10736830-10736849 MS.gene061868:CDS 30.0%
AACAACATGAACACAATAGA+TGG - chr7.4:10736299-10736318 MS.gene061868:intron 30.0%
AAGCTTAAATTGATAGGAGT+TGG + chr7.4:10736964-10736983 None:intergenic 30.0%
AATAGCTAGAATTGTGTTCT+GGG - chr7.4:10736831-10736850 MS.gene061868:CDS 30.0%
ACAACATGAACACAATAGAT+GGG - chr7.4:10736300-10736319 MS.gene061868:intron 30.0%
ACCTAATAAACCAAGGTTAT+TGG - chr7.4:10736350-10736369 MS.gene061868:intron 30.0%
AGCTTAAATTGATAGGAGTT+GGG + chr7.4:10736963-10736982 None:intergenic 30.0%
AGTAAAGAAGCTATGTGTAA+TGG + chr7.4:10734911-10734930 None:intergenic 30.0%
CACATGAAGCTTAAATTGAT+AGG + chr7.4:10736970-10736989 None:intergenic 30.0%
CTCTATGATGCATCATTAAA+AGG - chr7.4:10734803-10734822 MS.gene061868:CDS 30.0%
GAAACTCTACTTAGAATTAG+AGG + chr7.4:10734866-10734885 None:intergenic 30.0%
GAACAACATTCACAAATCAA+TGG - chr7.4:10735914-10735933 MS.gene061868:CDS 30.0%
GAATGTGTAATTTCTTGTGT+AGG + chr7.4:10736196-10736215 None:intergenic 30.0%
GTAAAGAAGCTATGTGTAAT+GGG + chr7.4:10734910-10734929 None:intergenic 30.0%
GTTATATCTTGGTTGGAATT+TGG - chr7.4:10736776-10736795 MS.gene061868:CDS 30.0%
TAAAGAAGCTATGTGTAATG+GGG + chr7.4:10734909-10734928 None:intergenic 30.0%
TATCAAACGAGGACAAATTA+AGG - chr7.4:10735354-10735373 MS.gene061868:CDS 30.0%
TCATTTATCGATGATTGTTG+TGG + chr7.4:10736022-10736041 None:intergenic 30.0%
TCCAATAACCTTGGTTTATT+AGG + chr7.4:10736354-10736373 None:intergenic 30.0%
TTACACATAGCTTCTTTACT+TGG - chr7.4:10734911-10734930 MS.gene061868:intron 30.0%
! CAAAGAGGGTAACAATATTT+TGG - chr7.4:10735324-10735343 MS.gene061868:CDS 30.0%
! CTTTTAATGATGCATCATAG+AGG + chr7.4:10734805-10734824 None:intergenic 30.0%
! GATTTAGGTTATATCTTGGT+TGG - chr7.4:10736769-10736788 MS.gene061868:CDS 30.0%
! GCATATGCAAATGTAGTTTT+TGG + chr7.4:10736941-10736960 None:intergenic 30.0%
! TAAGTTTATAGTGTGGGTTT+TGG - chr7.4:10736651-10736670 MS.gene061868:CDS 30.0%
! TATGTTGCTTACATACATGT+GGG - chr7.4:10736702-10736721 MS.gene061868:CDS 30.0%
! TCGTGATTTAGGTTATATCT+TGG - chr7.4:10736765-10736784 MS.gene061868:CDS 30.0%
! TTAGAATTAGAGGGTCTTTT+TGG + chr7.4:10734856-10734875 None:intergenic 30.0%
! TTGTCTTCTAAAGACAAAGA+GGG - chr7.4:10735310-10735329 MS.gene061868:CDS 30.0%
! TTTGTCTTCTAAAGACAAAG+AGG - chr7.4:10735309-10735328 MS.gene061868:CDS 30.0%
!! TAAGCTTCATGTGTTGATTT+AGG - chr7.4:10736977-10736996 MS.gene061868:CDS 30.0%
AAGATCATGTTAACTCACCA+AGG - chr7.4:10735870-10735889 MS.gene061868:CDS 35.0%
AGTTGTAGAGGATGACTAAT+CGG + chr7.4:10736070-10736089 None:intergenic 35.0%
ATCCTTGTTGAATCAATGAG+AGG - chr7.4:10735271-10735290 MS.gene061868:CDS 35.0%
GAAAACACACAAGTGCAAAA+TGG + chr7.4:10735227-10735246 None:intergenic 35.0%
GAAATTACACATTCATCACC+AGG - chr7.4:10736202-10736221 MS.gene061868:intron 35.0%
GAAGAAGATACAACAAAAGG+TGG - chr7.4:10736469-10736488 MS.gene061868:intron 35.0%
GCTTCACAAAAACCATAATC+AGG + chr7.4:10736505-10736524 None:intergenic 35.0%
TGCACTTATCAACTCCTTAA+TGG + chr7.4:10735152-10735171 None:intergenic 35.0%
TGGGAAGAAGATACAACAAA+AGG - chr7.4:10736466-10736485 MS.gene061868:intron 35.0%
TGTTGTTCATTAGCTATGCT+TGG + chr7.4:10736286-10736305 None:intergenic 35.0%
TTCATGAAAGAGAGTCATGT+AGG + chr7.4:10736918-10736937 None:intergenic 35.0%
TTGGATTTAGCTATCAAACG+AGG - chr7.4:10735343-10735362 MS.gene061868:CDS 35.0%
! AGCTCTTAAAGCTTCTGTTT+TGG + chr7.4:10735744-10735763 None:intergenic 35.0%
! GATTATGGTTTTTGTGAAGC+AGG - chr7.4:10736505-10736524 MS.gene061868:CDS 35.0%
! GTATGTTGCTTACATACATG+TGG - chr7.4:10736701-10736720 MS.gene061868:CDS 35.0%
! TTTTGTGGAGGATCATTGTT+TGG + chr7.4:10735965-10735984 None:intergenic 35.0%
!! GAAGGATTTGTTAGTTGTAG+AGG + chr7.4:10736082-10736101 None:intergenic 35.0%
!! TCTTAAAGCTTCTGTTTTGG+AGG + chr7.4:10735741-10735760 None:intergenic 35.0%
!!! TGTGATGGTTGTTGATTTTG+TGG + chr7.4:10735980-10735999 None:intergenic 35.0%
AAAATCCTCTGCCACACTAT+GGG - chr7.4:10737012-10737031 MS.gene061868:CDS 40.0%
AACAGAAACTATTCGGGTGA+TGG - chr7.4:10735180-10735199 MS.gene061868:intron 40.0%
ACCCGAATAGTTTCTGTTTC+CGG + chr7.4:10735178-10735197 None:intergenic 40.0%
AGTCTATTGTGACAGACAGA+AGG - chr7.4:10735488-10735507 MS.gene061868:CDS 40.0%
ATCGATGATTGTTGTGGTTG+TGG + chr7.4:10736016-10736035 None:intergenic 40.0%
ATGAACACAATAGATGGGAC+AGG - chr7.4:10736305-10736324 MS.gene061868:intron 40.0%
CTGCAGTTGTAGGATATGTT+TGG - chr7.4:10736530-10736549 MS.gene061868:CDS 40.0%
CTTACATACATGTGGGCATT+GGG - chr7.4:10736709-10736728 MS.gene061868:CDS 40.0%
GTATGGCTAGCAAAATCTCT+TGG + chr7.4:10735788-10735807 None:intergenic 40.0%
GTCCTCTCATTACAGCAAAA+TGG + chr7.4:10735120-10735139 None:intergenic 40.0%
TCAGTCAGTAATTAGTCCAC+CGG - chr7.4:10736435-10736454 MS.gene061868:intron 40.0%
TCTTGTGTAGGATCATTGTG+TGG + chr7.4:10736184-10736203 None:intergenic 40.0%
TGAACACAATAGATGGGACA+GGG - chr7.4:10736306-10736325 MS.gene061868:intron 40.0%
TGCCGGAAACAGAAACTATT+CGG - chr7.4:10735173-10735192 MS.gene061868:intron 40.0%
TGTTGTTCTAGTAACTGTCG+AGG + chr7.4:10735902-10735921 None:intergenic 40.0%
TTAGATATTTGTGGAGGACG+AGG + chr7.4:10736875-10736894 None:intergenic 40.0%
TTCACATCAGCTGCTAAGTT+GGG + chr7.4:10734974-10734993 None:intergenic 40.0%
! ATGGCTGAGATTGATGATCA+TGG - chr7.4:10735199-10735218 MS.gene061868:intron 40.0%
! CTAGAATTGTGTTCTGGGTT+AGG - chr7.4:10736836-10736855 MS.gene061868:CDS 40.0%
! GATTGGACTAGAGTTACTTG+AGG + chr7.4:10736046-10736065 None:intergenic 40.0%
! GGAGGATCAATGTTTTGTGA+TGG + chr7.4:10735995-10736014 None:intergenic 40.0%
! TGCATCACTATGTGTGCTTT+TGG - chr7.4:10736600-10736619 MS.gene061868:CDS 40.0%
! TGTAATGGGGTTTCAGAGAA+TGG + chr7.4:10734896-10734915 None:intergenic 40.0%
! TTCATCTAGCTTCGGCAAAA+GGG - chr7.4:10735014-10735033 MS.gene061868:intron 40.0%
!! CTCCATTTTGCTGTAATGAG+AGG - chr7.4:10735115-10735134 MS.gene061868:intron 40.0%
!! CTCCTCTCATTGATTCAACA+AGG + chr7.4:10735276-10735295 None:intergenic 40.0%
!! GTTTATAGTGTGGGTTTTGG+CGG - chr7.4:10736654-10736673 MS.gene061868:CDS 40.0%
!! TCATTAGCTATGCTTGGTGT+TGG + chr7.4:10736280-10736299 None:intergenic 40.0%
!!! GATGGTTGTTGATTTTGTGG+AGG + chr7.4:10735977-10735996 None:intergenic 40.0%
AACTGTCGAGGATCATTCCT+TGG + chr7.4:10735890-10735909 None:intergenic 45.0%
CAGTCAGTAATTAGTCCACC+GGG - chr7.4:10736436-10736455 MS.gene061868:intron 45.0%
GAAAATCCTCTGCCACACTA+TGG - chr7.4:10737011-10737030 MS.gene061868:CDS 45.0%
GAGGATGACTAATCGGTGAT+TGG + chr7.4:10736063-10736082 None:intergenic 45.0%
GATGATTGTTGTGGTTGTGG+AGG + chr7.4:10736013-10736032 None:intergenic 45.0%
GATGGTGATTGTGGATGTTG+AGG + chr7.4:10736160-10736179 None:intergenic 45.0%
GCCGGAAACAGAAACTATTC+GGG - chr7.4:10735174-10735193 MS.gene061868:intron 45.0%
GCTTACATACATGTGGGCAT+TGG - chr7.4:10736708-10736727 MS.gene061868:CDS 45.0%
GGTGGTTGTGAAGGACTATT+GGG + chr7.4:10736109-10736128 None:intergenic 45.0%
GGTTACGCTTGTCCTGATTA+TGG - chr7.4:10736490-10736509 MS.gene061868:CDS 45.0%
GTAGGATCATTGTGTGGTGA+TGG + chr7.4:10736178-10736197 None:intergenic 45.0%
GTTAGTGAGGGATTGTGAGA+TGG + chr7.4:10736130-10736149 None:intergenic 45.0%
GTTCACATCAGCTGCTAAGT+TGG + chr7.4:10734975-10734994 None:intergenic 45.0%
TCGCGAATCAAGCAAGTTTC+TGG + chr7.4:10735076-10735095 None:intergenic 45.0%
TGGTGGTTGTGAAGGACTAT+TGG + chr7.4:10736110-10736129 None:intergenic 45.0%
TTGCCGAAGCTAGATGAAGA+GGG + chr7.4:10735012-10735031 None:intergenic 45.0%
TTGTGGATGTTGAGGCTCAT+TGG + chr7.4:10736152-10736171 None:intergenic 45.0%
TTTGCCGAAGCTAGATGAAG+AGG + chr7.4:10735013-10735032 None:intergenic 45.0%
! CTTCATCTAGCTTCGGCAAA+AGG - chr7.4:10735013-10735032 MS.gene061868:intron 45.0%
! GTGGCAGAGGATTTTCAGAA+AGG + chr7.4:10737007-10737026 None:intergenic 45.0%
! TGAGGCTCATTGGTTAGTGA+GGG + chr7.4:10736142-10736161 None:intergenic 45.0%
! TTGAGGCTCATTGGTTAGTG+AGG + chr7.4:10736143-10736162 None:intergenic 45.0%
! TTGCCCTCTTCATCTAGCTT+CGG - chr7.4:10735006-10735025 MS.gene061868:intron 45.0%
! TTGTGAGATGGTGGTTGTGA+AGG + chr7.4:10736118-10736137 None:intergenic 45.0%
! TTGTGTTCTGGGTTAGGTCT+AGG - chr7.4:10736842-10736861 MS.gene061868:CDS 45.0%
!! CTATGCTTGGTGTTGGTGAA+GGG + chr7.4:10736273-10736292 None:intergenic 45.0%
!! GGAGTTGATAAGTGCAATGC+CGG - chr7.4:10735156-10735175 MS.gene061868:intron 45.0%
!! TTGTGTGGTGATGGTGATTG+TGG + chr7.4:10736169-10736188 None:intergenic 45.0%
!!! GTGCTTTTGGTTCTCGTAAG+TGG - chr7.4:10736613-10736632 MS.gene061868:CDS 45.0%
AGGACGCGTAGGAACCATTA+AGG - chr7.4:10735135-10735154 MS.gene061868:intron 50.0%
AGTGAGGGATTGTGAGATGG+TGG + chr7.4:10736127-10736146 None:intergenic 50.0%
GAAGCAGGAACTGCAGTTGT+AGG - chr7.4:10736520-10736539 MS.gene061868:CDS 50.0%
GAAGGACTATTGGGTGGTGA+AGG + chr7.4:10736100-10736119 None:intergenic 50.0%
GCAGCTGATGTGAACTCAGA+AGG - chr7.4:10734980-10734999 MS.gene061868:CDS 50.0%
GGTTGTGAAGGACTATTGGG+TGG + chr7.4:10736106-10736125 None:intergenic 50.0%
GTGGTGGTTGTAGAGGATTG+AGG + chr7.4:10736228-10736247 None:intergenic 50.0%
TCAGTAATTAGTCCACCGGG+CGG - chr7.4:10736439-10736458 MS.gene061868:intron 50.0%
TCCAAGTGCTTCCCATAGTG+TGG + chr7.4:10737026-10737045 None:intergenic 50.0%
! TCACTTGGTGAGAATGGTGG+TGG + chr7.4:10736247-10736266 None:intergenic 50.0%
! TCGTCACTTGGTGAGAATGG+TGG + chr7.4:10736250-10736269 None:intergenic 50.0%
!! AATGGTGGTGGTGGTTGTAG+AGG + chr7.4:10736235-10736254 None:intergenic 50.0%
!! GCTATGCTTGGTGTTGGTGA+AGG + chr7.4:10736274-10736293 None:intergenic 50.0%
GCTGTAATGAGAGGACGCGT+AGG - chr7.4:10735124-10735143 MS.gene061868:intron 55.0%
GGTTGTAGAGGATTGAGGCC+TGG + chr7.4:10736223-10736242 None:intergenic 55.0%
TCTTCTTCCCAAACACCGCC+CGG + chr7.4:10736457-10736476 None:intergenic 55.0%
TGCTTCCCATAGTGTGGCAG+AGG + chr7.4:10737020-10737039 None:intergenic 55.0%
! GGGTCGTCACTTGGTGAGAA+TGG + chr7.4:10736253-10736272 None:intergenic 55.0%
! GTTGGTGAAGGGTCGTCACT+TGG + chr7.4:10736262-10736281 None:intergenic 55.0%
!! CTTGGTGAGAATGGTGGTGG+TGG + chr7.4:10736244-10736263 None:intergenic 55.0%
!! GCCACACTATGGGAAGCACT+TGG - chr7.4:10737022-10737041 MS.gene061868:CDS 55.0%
TAGTCCACCGGGCGGTGTTT+GGG - chr7.4:10736447-10736466 MS.gene061868:intron 60.0%
TTAGTCCACCGGGCGGTGTT+TGG - chr7.4:10736446-10736465 MS.gene061868:intron 60.0%
! TCTGGGTTAGGTCTAGGCGC+AGG - chr7.4:10736848-10736867 MS.gene061868:CDS 60.0%
TCTTCCCAAACACCGCCCGG+TGG + chr7.4:10736454-10736473 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 10734794 10737064 10734794 ID=MS.gene061868
chr7.4 mRNA 10734794 10737064 10734794 ID=MS.gene061868.t1;Parent=MS.gene061868
chr7.4 exon 10736483 10737064 10736483 ID=MS.gene061868.t1.exon1;Parent=MS.gene061868.t1
chr7.4 CDS 10736483 10737064 10736483 ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1
chr7.4 exon 10735231 10736169 10735231 ID=MS.gene061868.t1.exon2;Parent=MS.gene061868.t1
chr7.4 CDS 10735231 10736169 10735231 ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1
chr7.4 exon 10734948 10735022 10734948 ID=MS.gene061868.t1.exon3;Parent=MS.gene061868.t1
chr7.4 CDS 10734948 10735022 10734948 ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1
chr7.4 exon 10734794 10734859 10734794 ID=MS.gene061868.t1.exon4;Parent=MS.gene061868.t1
chr7.4 CDS 10734794 10734859 10734794 ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1
Gene Sequence

>MS.gene061868

ATGAGAAACCTCTATGATGCATCATTAAAAGGATGTGTGATTAGCTTAAAAGCACTTATCCAAAAAGACCCTCTAATTCTAAGTAGAGTTTCACTCTCTCCATTCTCTGAAACCCCATTACACATAGCTTCTTTACTTGGACATTTAGAATTAAGTCAAATTCTTCTTGACATAAATCCCAACTTAGCAGCTGATGTGAACTCAGAAGGACATTGCCCTCTTCATCTAGCTTCGGCAAAAGGGCACATTGAAATAGTGAAAGCTTTGTTGTTGACAGATCCAGAAACTTGCTTGATTCGCGACAAAGATGACAAACTTTCTCTCCATTTTGCTGTAATGAGAGGACGCGTAGGAACCATTAAGGAGTTGATAAGTGCAATGCCGGAAACAGAAACTATTCGGGTGATGGCTGAGATTGATGATCATGGTTCCATTTTGCACTTGTGTGTTTTCTATAATCATCTAGAGGCATTGAAAATCCTTGTTGAATCAATGAGAGGAGACATTGATCAATTTTTGTCTTCTAAAGACAAAGAGGGTAACAATATTTTGGATTTAGCTATCAAACGAGGACAAATTAAGGTAATGTTTTTTCAACAACAGATAAATTTTGGATTTGCTCACTTTCTAAAAATATTTTCAATTTACAATTTAAAAATCTGAATTCATTTTAAACTGCTAACAATAAGATGAAAGTCTATTGTGACAGACAGAAGGTGAAAGACTTTTTAAGTAGAATACATTTTTAAAAATAATGAAAACAATGTTTTCACATTTTCAAAAATTATAAAAGAAAACTACAAGGAAAATACTGAATCTTGTTTTGAGCCCTTGAAACCTTTTCATATGAATAATTGGATTAAACATTAGTAACAACTTTTATATAACTTTGCAGATCATAAAGTACTTGCTCTCACTATCTGAAATGAGTGAGACAATAAATACCTCCAAAACAGAAGCTTTAAGAGCTTTATATATGTTGGAGCATAGTCCAAGAGATTTTGCTAGCCATACAATTCAACACATTTTGACTGAAGAAAGAGCTCAAACATCTACAAATATAGTTATTGCTCAACAAGATCATGTTAACTCACCAAGGAATGATCCTCGACAGTTACTAGAACAACATTCACAAATCAATGGTCATGAACAATCACAAACTTCATCACCAAACAATGATCCTCCACAAAATCAACAACCATCACAAAACATTGATCCTCCACAACCACAACAATCATCGATAAATGATCCTCAAGTAACTCTAGTCCAATCACCGATTAGTCATCCTCTACAACTAACAAATCCTTCACCACCCAATAGTCCTTCACAACCACCATCTCACAATCCCTCACTAACCAATGAGCCTCAACATCCACAATCACCATCACCACACAATGATCCTACACAAGAAATTACACATTCATCACCAGGCCTCAATCCTCTACAACCACCACCACCATTCTCACCAAGTGACGACCCTTCACCAACACCAAGCATAGCTAATGAACAACATGAACACAATAGATGGGACAGGGTTGAGAGTTTCTGCAACAAATACCTAATAAACCAAGGTTATTGGATAGATAAAAAGACAAGAGAACAATTAATGGTAGCAGCAACTGTGATTGCAACTATGACTTTTCAGTCAGTAATTAGTCCACCGGGCGGTGTTTGGGAAGAAGATACAACAAAAGGTGGTTACGCTTGTCCTGATTATGGTTTTTGTGAAGCAGGAACTGCAGTTGTAGGATATGTTTGGTCACCAGATTATCTTAAATTCATTTTCTTCAACTCTGCTTCTTTCTTTGCATCACTATGTGTGCTTTTGGTTCTCGTAAGTGGATTTCCTCTTCATAATAAGTTTATAGTGTGGGTTTTGGCGGTTTTGATGATAGTTGCAATCACATGTATGTTGCTTACATACATGTGGGCATTGGGATTAATTAGTCCTAATCACATTTTCTATAGAATTCGTGATTTAGGTTATATCTTGGTTGGAATTTGGTCTTTCTTACTTTTTGTTGTTTGTTTGATTCAAATAGCTAGAATTGTGTTCTGGGTTAGGTCTAGGCGCAGGTCCTCGTCCTCCACAAATATCTAAGTTAAAAGTAGAAAAGGTTGCCTACATGACTCTCTTTCATGAACCAAAAACTACATTTGCATATGCCCAACTCCTATCAATTTAAGCTTCATGTGTTGATTTAGGATATCCTTTCTGAAAATCCTCTGCCACACTATGGGAAGCACTTGGAGAAGTGCGATGATTCATAA

Protein sequence

>MS.gene061868.t1

MRNLYDASLKGCVISLKALIQKDPLILSRVSLSPFSETPLHIASLLGHLELSQILLDINPNLAADVNSEGHCPLHLASAKGHIEIVKALLLTDPETCLIRDKDDKLSLHFAVMRGRVGTIKELISAMPETETIRVMAEIDDHGSILHLCVFYNHLEALKILVESMRGDIDQFLSSKDKEGNNILDLAIKRGQIKIIKYLLSLSEMSETINTSKTEALRALYMLEHSPRDFASHTIQHILTEERAQTSTNIVIAQQDHVNSPRNDPRQLLEQHSQINGHEQSQTSSPNNDPPQNQQPSQNIDPPQPQQSSINDPQVTLVQSPISHPLQLTNPSPPNSPSQPPSHNPSLTNEPQHPQSPSPHNDPTQEITHSSPGLNPLQPPPPFSPSDDPSPTPSIANEQHEHNRWDRVESFCNKYLINQGYWIDKKTREQLMVAATVIATMTFQSVISPPGGVWEEDTTKGGYACPDYGFCEAGTAVVGYVWSPDYLKFIFFNSASFFASLCVLLVLLELCSGLGLGAGPRPPQISKLKVEKDILSENPLPHYGKHLEKCDDS