Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061868.t1 | XP_003625478.1 | 94.5 | 509 | 27 | 1 | 1 | 508 | 6 | 514 | 1.10E-153 | 553.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061868.t1 | A2Q5K6 | 94.5 | 509 | 27 | 1 | 1 | 508 | 6 | 514 | 7.9e-154 | 553.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02648 | MS.gene061868 | PPI |
MS.gene013681 | MS.gene061868 | PPI |
MS.gene02491 | MS.gene061868 | PPI |
MS.gene81951 | MS.gene061868 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061868.t1 | MTR_7g099570 | 94.499 | 509 | 27 | 1 | 1 | 508 | 6 | 514 | 0.0 | 897 |
MS.gene061868.t1 | MTR_7g099580 | 68.205 | 195 | 61 | 1 | 1 | 194 | 9 | 203 | 5.92e-86 | 270 |
MS.gene061868.t1 | MTR_7g099580 | 78.723 | 47 | 10 | 0 | 419 | 465 | 238 | 284 | 5.81e-17 | 82.8 |
MS.gene061868.t1 | MTR_1g069110 | 37.901 | 343 | 158 | 5 | 1 | 339 | 15 | 306 | 2.04e-58 | 201 |
MS.gene061868.t1 | MTR_1g069110 | 50.000 | 128 | 60 | 2 | 381 | 508 | 236 | 359 | 5.37e-34 | 134 |
MS.gene061868.t1 | MTR_7g099550 | 57.143 | 105 | 40 | 1 | 63 | 167 | 136 | 235 | 2.95e-29 | 116 |
MS.gene061868.t1 | MTR_2g101320 | 25.231 | 432 | 247 | 10 | 32 | 461 | 134 | 491 | 1.45e-23 | 105 |
MS.gene061868.t1 | MTR_2g101310 | 26.426 | 333 | 221 | 9 | 32 | 360 | 134 | 446 | 1.92e-21 | 98.6 |
MS.gene061868.t1 | MTR_2g101310 | 26.426 | 333 | 221 | 9 | 32 | 360 | 134 | 446 | 2.65e-21 | 97.8 |
MS.gene061868.t1 | MTR_7g021090 | 28.251 | 223 | 146 | 3 | 4 | 217 | 9 | 226 | 8.09e-20 | 92.4 |
MS.gene061868.t1 | MTR_1g059930 | 30.526 | 190 | 118 | 4 | 4 | 184 | 12 | 196 | 3.65e-19 | 90.5 |
MS.gene061868.t1 | MTR_8g072510 | 29.834 | 181 | 113 | 3 | 16 | 187 | 22 | 197 | 5.81e-18 | 87.0 |
MS.gene061868.t1 | MTR_8g073260 | 28.571 | 203 | 131 | 5 | 7 | 200 | 14 | 211 | 6.52e-18 | 87.0 |
MS.gene061868.t1 | MTR_8g068990 | 28.378 | 222 | 134 | 3 | 7 | 220 | 15 | 219 | 8.95e-18 | 86.7 |
MS.gene061868.t1 | MTR_3g016210 | 29.834 | 181 | 113 | 4 | 16 | 187 | 22 | 197 | 1.07e-17 | 86.3 |
MS.gene061868.t1 | MTR_8g062410 | 30.102 | 196 | 123 | 3 | 4 | 190 | 10 | 200 | 3.00e-17 | 84.7 |
MS.gene061868.t1 | MTR_8g069880 | 31.579 | 190 | 116 | 4 | 7 | 187 | 10 | 194 | 3.48e-17 | 84.7 |
MS.gene061868.t1 | MTR_8g039620 | 27.536 | 207 | 136 | 3 | 4 | 201 | 14 | 215 | 2.82e-16 | 81.6 |
MS.gene061868.t1 | MTR_1g115575 | 28.082 | 292 | 177 | 10 | 4 | 287 | 135 | 401 | 4.79e-16 | 81.6 |
MS.gene061868.t1 | MTR_7g451420 | 30.000 | 190 | 119 | 3 | 7 | 187 | 12 | 196 | 5.18e-16 | 79.7 |
MS.gene061868.t1 | MTR_7g100390 | 30.542 | 203 | 125 | 5 | 2 | 199 | 82 | 273 | 1.03e-15 | 80.5 |
MS.gene061868.t1 | MTR_8g467780 | 30.159 | 189 | 118 | 3 | 7 | 186 | 14 | 197 | 1.42e-14 | 76.6 |
MS.gene061868.t1 | MTR_2g096190 | 29.902 | 204 | 127 | 5 | 2 | 200 | 99 | 291 | 2.49e-14 | 76.3 |
MS.gene061868.t1 | MTR_3g105650 | 28.022 | 182 | 117 | 3 | 16 | 188 | 17 | 193 | 5.82e-14 | 74.3 |
MS.gene061868.t1 | MTR_4g062100 | 28.063 | 253 | 155 | 7 | 4 | 250 | 74 | 305 | 7.76e-14 | 74.7 |
MS.gene061868.t1 | MTR_1g032100 | 27.700 | 213 | 142 | 5 | 39 | 250 | 94 | 295 | 1.25e-13 | 73.9 |
MS.gene061868.t1 | MTR_8g066670 | 24.436 | 266 | 177 | 6 | 16 | 264 | 1087 | 1345 | 4.69e-13 | 72.8 |
MS.gene061868.t1 | MTR_8g105260 | 27.230 | 213 | 143 | 5 | 39 | 250 | 101 | 302 | 6.05e-13 | 71.6 |
MS.gene061868.t1 | MTR_7g100430 | 26.275 | 255 | 162 | 6 | 39 | 289 | 161 | 393 | 8.82e-12 | 68.2 |
MS.gene061868.t1 | MTR_7g117620 | 37.391 | 115 | 66 | 2 | 2 | 112 | 114 | 226 | 2.07e-11 | 67.0 |
MS.gene061868.t1 | MTR_7g117620 | 25.359 | 209 | 117 | 5 | 37 | 214 | 82 | 282 | 9.12e-11 | 64.7 |
MS.gene061868.t1 | MTR_7g087540 | 51.471 | 68 | 29 | 4 | 414 | 480 | 25 | 89 | 2.44e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061868.t1 | AT4G10720 | 29.961 | 257 | 162 | 8 | 4 | 250 | 5 | 253 | 9.84e-21 | 95.1 |
MS.gene061868.t1 | AT5G54610 | 32.569 | 218 | 134 | 5 | 11 | 220 | 12 | 224 | 1.25e-20 | 95.1 |
MS.gene061868.t1 | AT4G10720 | 29.961 | 257 | 162 | 8 | 4 | 250 | 5 | 253 | 2.18e-20 | 94.4 |
MS.gene061868.t1 | AT5G54620 | 30.876 | 217 | 136 | 4 | 2 | 209 | 3 | 214 | 4.55e-20 | 93.2 |
MS.gene061868.t1 | AT1G14480 | 29.612 | 206 | 131 | 5 | 4 | 200 | 5 | 205 | 1.52e-17 | 85.9 |
MS.gene061868.t1 | AT5G51160 | 30.612 | 196 | 116 | 6 | 65 | 250 | 42 | 227 | 4.27e-17 | 84.3 |
MS.gene061868.t1 | AT5G15500 | 25.993 | 277 | 184 | 6 | 2 | 262 | 4 | 275 | 7.85e-17 | 83.6 |
MS.gene061868.t1 | AT2G31820 | 32.843 | 204 | 118 | 6 | 4 | 202 | 193 | 382 | 9.72e-17 | 84.0 |
MS.gene061868.t1 | AT1G14500 | 28.079 | 203 | 132 | 3 | 7 | 200 | 8 | 205 | 1.72e-16 | 82.4 |
MS.gene061868.t1 | AT1G14480 | 31.707 | 164 | 103 | 3 | 4 | 163 | 5 | 163 | 2.72e-16 | 81.6 |
MS.gene061868.t1 | AT1G07710 | 29.279 | 222 | 106 | 6 | 2 | 217 | 99 | 275 | 1.43e-13 | 73.9 |
MS.gene061868.t1 | AT1G07710 | 29.279 | 222 | 106 | 6 | 2 | 217 | 99 | 275 | 1.43e-13 | 73.9 |
MS.gene061868.t1 | AT3G12360 | 27.891 | 294 | 175 | 10 | 4 | 287 | 133 | 399 | 2.75e-13 | 73.2 |
MS.gene061868.t1 | AT3G12360 | 27.891 | 294 | 175 | 10 | 4 | 287 | 121 | 387 | 2.89e-13 | 72.8 |
MS.gene061868.t1 | AT5G60070 | 29.048 | 210 | 100 | 6 | 2 | 206 | 106 | 271 | 4.84e-13 | 72.0 |
MS.gene061868.t1 | AT3G13950 | 39.655 | 116 | 65 | 3 | 397 | 508 | 4 | 118 | 9.04e-13 | 68.2 |
MS.gene061868.t1 | AT5G50140 | 23.894 | 339 | 213 | 12 | 35 | 353 | 26 | 339 | 1.05e-12 | 70.9 |
MS.gene061868.t1 | AT5G02620 | 26.855 | 283 | 174 | 10 | 4 | 279 | 60 | 316 | 2.24e-12 | 70.1 |
MS.gene061868.t1 | AT5G02620 | 26.855 | 283 | 174 | 10 | 4 | 279 | 60 | 316 | 2.24e-12 | 70.1 |
MS.gene061868.t1 | AT5G02620 | 26.855 | 283 | 174 | 10 | 4 | 279 | 60 | 316 | 2.24e-12 | 70.1 |
MS.gene061868.t1 | AT1G05640 | 29.317 | 249 | 144 | 8 | 39 | 282 | 191 | 412 | 4.17e-12 | 69.3 |
MS.gene061868.t1 | AT3G09550 | 25.597 | 293 | 187 | 9 | 4 | 289 | 154 | 422 | 1.52e-11 | 67.4 |
MS.gene061868.t1 | AT3G09550 | 25.597 | 293 | 187 | 9 | 4 | 289 | 147 | 415 | 1.53e-11 | 67.4 |
MS.gene061868.t1 | AT3G09550 | 25.597 | 293 | 187 | 9 | 4 | 289 | 147 | 415 | 1.53e-11 | 67.4 |
Find 113 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAGAGGGTAACAATATTT+TGG | 0.140494 | 7.4:-10736512 | MS.gene061868:CDS |
TCGCGAATCAAGCAAGTTTC+TGG | 0.144507 | 7.4:+10736763 | None:intergenic |
TGCACTTATCAACTCCTTAA+TGG | 0.167211 | 7.4:+10736687 | None:intergenic |
TCCAATAACCTTGGTTTATT+AGG | 0.187112 | 7.4:+10735485 | None:intergenic |
ACCTAATAAACCAAGGTTAT+TGG | 0.210805 | 7.4:-10735486 | MS.gene061868:CDS |
CTCTATGATGCATCATTAAA+AGG | 0.232530 | 7.4:-10737033 | MS.gene061868:CDS |
ACCCGAATAGTTTCTGTTTC+CGG | 0.272426 | 7.4:+10736661 | None:intergenic |
AACAACATGAACACAATAGA+TGG | 0.289553 | 7.4:-10735537 | MS.gene061868:CDS |
AAAGACAAGAGAACAATTAA+TGG | 0.291148 | 7.4:-10735455 | MS.gene061868:CDS |
TGCATCACTATGTGTGCTTT+TGG | 0.293332 | 7.4:-10735236 | MS.gene061868:CDS |
GGTTACGCTTGTCCTGATTA+TGG | 0.311723 | 7.4:-10735346 | MS.gene061868:CDS |
GTAAAGAAGCTATGTGTAAT+GGG | 0.322353 | 7.4:+10736929 | None:intergenic |
GAAAATCCTCTGCCACACTA+TGG | 0.322481 | 7.4:-10734825 | MS.gene061868:CDS |
TATCAAACGAGGACAAATTA+AGG | 0.325515 | 7.4:-10736482 | MS.gene061868:intron |
AGCTCTTAAAGCTTCTGTTT+TGG | 0.341636 | 7.4:+10736095 | None:intergenic |
TGCCGGAAACAGAAACTATT+CGG | 0.348258 | 7.4:-10736663 | MS.gene061868:CDS |
CTAGAATTGTGTTCTGGGTT+AGG | 0.351230 | 7.4:-10735000 | MS.gene061868:CDS |
GAAAACACACAAGTGCAAAA+TGG | 0.355298 | 7.4:+10736612 | None:intergenic |
AAATAGCTAGAATTGTGTTC+TGG | 0.368470 | 7.4:-10735006 | MS.gene061868:intron |
TTAGTCCACCGGGCGGTGTT+TGG | 0.379011 | 7.4:-10735390 | MS.gene061868:CDS |
AAAATGAATTTAAGATAATC+TGG | 0.381714 | 7.4:+10735280 | None:intergenic |
TAGTCCACCGGGCGGTGTTT+GGG | 0.381761 | 7.4:-10735389 | MS.gene061868:CDS |
TTACACATAGCTTCTTTACT+TGG | 0.383128 | 7.4:-10736925 | MS.gene061868:CDS |
TGGTGGTTGTGAAGGACTAT+TGG | 0.387197 | 7.4:+10735729 | None:intergenic |
CTTCATCTAGCTTCGGCAAA+AGG | 0.398211 | 7.4:-10736823 | MS.gene061868:CDS |
GTCCTCTCATTACAGCAAAA+TGG | 0.410295 | 7.4:+10736719 | None:intergenic |
GAAACTCTACTTAGAATTAG+AGG | 0.414613 | 7.4:+10736973 | None:intergenic |
GGTGGTTGTGAAGGACTATT+GGG | 0.420600 | 7.4:+10735730 | None:intergenic |
AGGACGCGTAGGAACCATTA+AGG | 0.421682 | 7.4:-10736701 | MS.gene061868:CDS |
AATAGCTAGAATTGTGTTCT+GGG | 0.426330 | 7.4:-10735005 | MS.gene061868:intron |
TTCACATCAGCTGCTAAGTT+GGG | 0.430939 | 7.4:+10736865 | None:intergenic |
AGTAAAGAAGCTATGTGTAA+TGG | 0.433633 | 7.4:+10736928 | None:intergenic |
ATCGATGATTGTTGTGGTTG+TGG | 0.434864 | 7.4:+10735823 | None:intergenic |
TTGTGTTCTGGGTTAGGTCT+AGG | 0.438558 | 7.4:-10734994 | MS.gene061868:CDS |
TTTAAGAGCTTTATATATGT+TGG | 0.440411 | 7.4:-10736082 | MS.gene061868:CDS |
CTGCAGTTGTAGGATATGTT+TGG | 0.441485 | 7.4:-10735306 | MS.gene061868:CDS |
TGTAATGGGGTTTCAGAGAA+TGG | 0.449861 | 7.4:+10736943 | None:intergenic |
GTTCACATCAGCTGCTAAGT+TGG | 0.450012 | 7.4:+10736864 | None:intergenic |
ATCTAAGTTAAAAGTAGAAA+AGG | 0.458916 | 7.4:-10734947 | MS.gene061868:intron |
TTGTGTGGTGATGGTGATTG+TGG | 0.460725 | 7.4:+10735670 | None:intergenic |
AGTTGTAGAGGATGACTAAT+CGG | 0.467947 | 7.4:+10735769 | None:intergenic |
TTGCCCTCTTCATCTAGCTT+CGG | 0.469951 | 7.4:-10736830 | MS.gene061868:CDS |
TGTTGTTCATTAGCTATGCT+TGG | 0.473040 | 7.4:+10735553 | None:intergenic |
GCCGGAAACAGAAACTATTC+GGG | 0.478264 | 7.4:-10736662 | MS.gene061868:CDS |
GAAGCAGGAACTGCAGTTGT+AGG | 0.479785 | 7.4:-10735316 | MS.gene061868:CDS |
TCATTAGCTATGCTTGGTGT+TGG | 0.483018 | 7.4:+10735559 | None:intergenic |
TTGTGGATGTTGAGGCTCAT+TGG | 0.485922 | 7.4:+10735687 | None:intergenic |
TTCATCTAGCTTCGGCAAAA+GGG | 0.485961 | 7.4:-10736822 | MS.gene061868:CDS |
TCAGTCAGTAATTAGTCCAC+CGG | 0.487845 | 7.4:-10735401 | MS.gene061868:CDS |
GTATGGCTAGCAAAATCTCT+TGG | 0.489498 | 7.4:+10736051 | None:intergenic |
GAGGATGACTAATCGGTGAT+TGG | 0.491854 | 7.4:+10735776 | None:intergenic |
TCAAAATGTGTTGAATTGTA+TGG | 0.493536 | 7.4:+10736034 | None:intergenic |
GCTATGCTTGGTGTTGGTGA+AGG | 0.497302 | 7.4:+10735565 | None:intergenic |
GGGTCGTCACTTGGTGAGAA+TGG | 0.511325 | 7.4:+10735586 | None:intergenic |
AAAATCCTCTGCCACACTAT+GGG | 0.517000 | 7.4:-10734824 | MS.gene061868:CDS |
GAAGGATTTGTTAGTTGTAG+AGG | 0.529973 | 7.4:+10735757 | None:intergenic |
AACTGTCGAGGATCATTCCT+TGG | 0.530579 | 7.4:+10735949 | None:intergenic |
GGAGTTGATAAGTGCAATGC+CGG | 0.532038 | 7.4:-10736680 | MS.gene061868:CDS |
TGCTTCCCATAGTGTGGCAG+AGG | 0.532654 | 7.4:+10734819 | None:intergenic |
GAACAACATTCACAAATCAA+TGG | 0.538302 | 7.4:-10735922 | MS.gene061868:CDS |
TTGTGAGATGGTGGTTGTGA+AGG | 0.538920 | 7.4:+10735721 | None:intergenic |
AGTGAGGGATTGTGAGATGG+TGG | 0.541315 | 7.4:+10735712 | None:intergenic |
CTTGGTGAGAATGGTGGTGG+TGG | 0.543098 | 7.4:+10735595 | None:intergenic |
TGGGAAGAAGATACAACAAA+AGG | 0.543938 | 7.4:-10735370 | MS.gene061868:CDS |
CTCCTCTCATTGATTCAACA+AGG | 0.545286 | 7.4:+10736563 | None:intergenic |
AACAGAAACTATTCGGGTGA+TGG | 0.549369 | 7.4:-10736656 | MS.gene061868:CDS |
TCTTCTTCCCAAACACCGCC+CGG | 0.555882 | 7.4:+10735382 | None:intergenic |
GCCACACTATGGGAAGCACT+TGG | 0.556613 | 7.4:-10734814 | MS.gene061868:CDS |
AATGGTGGTGGTGGTTGTAG+AGG | 0.556799 | 7.4:+10735604 | None:intergenic |
TTTGTCTTCTAAAGACAAAG+AGG | 0.558670 | 7.4:-10736527 | MS.gene061868:CDS |
ATGAACACAATAGATGGGAC+AGG | 0.562692 | 7.4:-10735531 | MS.gene061868:CDS |
GAAGGACTATTGGGTGGTGA+AGG | 0.565122 | 7.4:+10735739 | None:intergenic |
TTGAGGCTCATTGGTTAGTG+AGG | 0.568784 | 7.4:+10735696 | None:intergenic |
CTATGCTTGGTGTTGGTGAA+GGG | 0.569653 | 7.4:+10735566 | None:intergenic |
TCCAAGTGCTTCCCATAGTG+TGG | 0.571682 | 7.4:+10734813 | None:intergenic |
GTAGGATCATTGTGTGGTGA+TGG | 0.571721 | 7.4:+10735661 | None:intergenic |
CAGTCAGTAATTAGTCCACC+GGG | 0.572133 | 7.4:-10735400 | MS.gene061868:CDS |
TGAGGCTCATTGGTTAGTGA+GGG | 0.573688 | 7.4:+10735697 | None:intergenic |
GGTTGTAGAGGATTGAGGCC+TGG | 0.573875 | 7.4:+10735616 | None:intergenic |
TTGTCTTCTAAAGACAAAGA+GGG | 0.575204 | 7.4:-10736526 | MS.gene061868:CDS |
TTAGATATTTGTGGAGGACG+AGG | 0.576543 | 7.4:+10734964 | None:intergenic |
GCAGCTGATGTGAACTCAGA+AGG | 0.582169 | 7.4:-10736856 | MS.gene061868:CDS |
GTTGGTGAAGGGTCGTCACT+TGG | 0.585627 | 7.4:+10735577 | None:intergenic |
ATGGCTGAGATTGATGATCA+TGG | 0.588724 | 7.4:-10736637 | MS.gene061868:CDS |
AAACTCTACTTAGAATTAGA+GGG | 0.589124 | 7.4:+10736974 | None:intergenic |
GTGGTGGTTGTAGAGGATTG+AGG | 0.597688 | 7.4:+10735611 | None:intergenic |
TCACTTGGTGAGAATGGTGG+TGG | 0.599059 | 7.4:+10735592 | None:intergenic |
GATGGTGATTGTGGATGTTG+AGG | 0.600949 | 7.4:+10735679 | None:intergenic |
TCATTTATCGATGATTGTTG+TGG | 0.602451 | 7.4:+10735817 | None:intergenic |
TTTGCCGAAGCTAGATGAAG+AGG | 0.604364 | 7.4:+10736826 | None:intergenic |
ATCCTTGTTGAATCAATGAG+AGG | 0.608497 | 7.4:-10736565 | MS.gene061868:CDS |
ACAACATGAACACAATAGAT+GGG | 0.609468 | 7.4:-10735536 | MS.gene061868:CDS |
TCTGGGTTAGGTCTAGGCGC+AGG | 0.609783 | 7.4:-10734988 | MS.gene061868:CDS |
GAATGTGTAATTTCTTGTGT+AGG | 0.616234 | 7.4:+10735643 | None:intergenic |
TTGCCGAAGCTAGATGAAGA+GGG | 0.617908 | 7.4:+10736827 | None:intergenic |
GGTTGTGAAGGACTATTGGG+TGG | 0.622829 | 7.4:+10735733 | None:intergenic |
GTTAGTGAGGGATTGTGAGA+TGG | 0.623672 | 7.4:+10735709 | None:intergenic |
GAAGAAGATACAACAAAAGG+TGG | 0.625546 | 7.4:-10735367 | MS.gene061868:CDS |
GCTGTAATGAGAGGACGCGT+AGG | 0.625908 | 7.4:-10736712 | MS.gene061868:CDS |
TCGTCACTTGGTGAGAATGG+TGG | 0.634283 | 7.4:+10735589 | None:intergenic |
TTTAACTTAGATATTTGTGG+AGG | 0.636829 | 7.4:+10734958 | None:intergenic |
GATTGGACTAGAGTTACTTG+AGG | 0.640890 | 7.4:+10735793 | None:intergenic |
AACAAATACCTAATAAACCA+AGG | 0.645161 | 7.4:-10735493 | MS.gene061868:CDS |
TAAAGAAGCTATGTGTAATG+GGG | 0.652798 | 7.4:+10736930 | None:intergenic |
GAAATTACACATTCATCACC+AGG | 0.657014 | 7.4:-10735634 | MS.gene061868:CDS |
AAGATCATGTTAACTCACCA+AGG | 0.659607 | 7.4:-10735966 | MS.gene061868:CDS |
TGTTGTTCTAGTAACTGTCG+AGG | 0.660930 | 7.4:+10735937 | None:intergenic |
GATGATTGTTGTGGTTGTGG+AGG | 0.661128 | 7.4:+10735826 | None:intergenic |
TCTTCCCAAACACCGCCCGG+TGG | 0.662288 | 7.4:+10735385 | None:intergenic |
TCTTGTGTAGGATCATTGTG+TGG | 0.698697 | 7.4:+10735655 | None:intergenic |
TGAACACAATAGATGGGACA+GGG | 0.709494 | 7.4:-10735530 | MS.gene061868:CDS |
TTGGATTTAGCTATCAAACG+AGG | 0.710414 | 7.4:-10736493 | MS.gene061868:CDS |
TCAGTAATTAGTCCACCGGG+CGG | 0.788117 | 7.4:-10735397 | MS.gene061868:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATAAAAGAAAACTACA+AGG | - | chr7.4:10735576-10735595 | MS.gene061868:CDS | 15.0% |
!!! | AAAATGAATTTAAGATAATC+TGG | + | chr7.4:10736559-10736578 | None:intergenic | 15.0% |
!! | ACTATAAACTTATTATGAAG+AGG | + | chr7.4:10736643-10736662 | None:intergenic | 20.0% |
!! | ATCCAATTATTCATATGAAA+AGG | + | chr7.4:10735634-10735653 | None:intergenic | 20.0% |
!! | ATCTAAGTTAAAAGTAGAAA+AGG | - | chr7.4:10736889-10736908 | MS.gene061868:CDS | 20.0% |
!! | ATTCTATAGAAAATGTGATT+AGG | + | chr7.4:10736745-10736764 | None:intergenic | 20.0% |
!! | TCATAATAAGTTTATAGTGT+GGG | - | chr7.4:10736645-10736664 | MS.gene061868:CDS | 20.0% |
!! | TTCATAATAAGTTTATAGTG+TGG | - | chr7.4:10736644-10736663 | MS.gene061868:CDS | 20.0% |
!!! | AACCTTTTCATATGAATAAT+TGG | - | chr7.4:10735629-10735648 | MS.gene061868:CDS | 20.0% |
!!! | ACTTTTAACTTAGATATTTG+TGG | + | chr7.4:10736884-10736903 | None:intergenic | 20.0% |
!!! | TTTAAGAGCTTTATATATGT+TGG | - | chr7.4:10735754-10735773 | MS.gene061868:CDS | 20.0% |
!!! | TTTCAACAACAGATAAATTT+TGG | - | chr7.4:10735385-10735404 | MS.gene061868:CDS | 20.0% |
! | AAACTCTACTTAGAATTAGA+GGG | + | chr7.4:10734865-10734884 | None:intergenic | 25.0% |
! | AAAGACAAGAGAACAATTAA+TGG | - | chr7.4:10736381-10736400 | MS.gene061868:intron | 25.0% |
! | AACAAATACCTAATAAACCA+AGG | - | chr7.4:10736343-10736362 | MS.gene061868:intron | 25.0% |
! | ATTCATATGAAAAGGTTTCA+AGG | + | chr7.4:10735626-10735645 | None:intergenic | 25.0% |
! | TCAAAATGTGTTGAATTGTA+TGG | + | chr7.4:10735805-10735824 | None:intergenic | 25.0% |
! | TTCATATGAAAAGGTTTCAA+GGG | + | chr7.4:10735625-10735644 | None:intergenic | 25.0% |
! | TTCTATAGAATTCGTGATTT+AGG | - | chr7.4:10736754-10736773 | MS.gene061868:CDS | 25.0% |
!! | TGTTTTCTATAATCATCTAG+AGG | - | chr7.4:10735240-10735259 | MS.gene061868:CDS | 25.0% |
!! | TTTAACTTAGATATTTGTGG+AGG | + | chr7.4:10736881-10736900 | None:intergenic | 25.0% |
!! | TTTTATCTATCCAATAACCT+TGG | + | chr7.4:10736363-10736382 | None:intergenic | 25.0% |
AAATAGCTAGAATTGTGTTC+TGG | - | chr7.4:10736830-10736849 | MS.gene061868:CDS | 30.0% | |
AACAACATGAACACAATAGA+TGG | - | chr7.4:10736299-10736318 | MS.gene061868:intron | 30.0% | |
AAGCTTAAATTGATAGGAGT+TGG | + | chr7.4:10736964-10736983 | None:intergenic | 30.0% | |
AATAGCTAGAATTGTGTTCT+GGG | - | chr7.4:10736831-10736850 | MS.gene061868:CDS | 30.0% | |
ACAACATGAACACAATAGAT+GGG | - | chr7.4:10736300-10736319 | MS.gene061868:intron | 30.0% | |
ACCTAATAAACCAAGGTTAT+TGG | - | chr7.4:10736350-10736369 | MS.gene061868:intron | 30.0% | |
AGCTTAAATTGATAGGAGTT+GGG | + | chr7.4:10736963-10736982 | None:intergenic | 30.0% | |
AGTAAAGAAGCTATGTGTAA+TGG | + | chr7.4:10734911-10734930 | None:intergenic | 30.0% | |
CACATGAAGCTTAAATTGAT+AGG | + | chr7.4:10736970-10736989 | None:intergenic | 30.0% | |
CTCTATGATGCATCATTAAA+AGG | - | chr7.4:10734803-10734822 | MS.gene061868:CDS | 30.0% | |
GAAACTCTACTTAGAATTAG+AGG | + | chr7.4:10734866-10734885 | None:intergenic | 30.0% | |
GAACAACATTCACAAATCAA+TGG | - | chr7.4:10735914-10735933 | MS.gene061868:CDS | 30.0% | |
GAATGTGTAATTTCTTGTGT+AGG | + | chr7.4:10736196-10736215 | None:intergenic | 30.0% | |
GTAAAGAAGCTATGTGTAAT+GGG | + | chr7.4:10734910-10734929 | None:intergenic | 30.0% | |
GTTATATCTTGGTTGGAATT+TGG | - | chr7.4:10736776-10736795 | MS.gene061868:CDS | 30.0% | |
TAAAGAAGCTATGTGTAATG+GGG | + | chr7.4:10734909-10734928 | None:intergenic | 30.0% | |
TATCAAACGAGGACAAATTA+AGG | - | chr7.4:10735354-10735373 | MS.gene061868:CDS | 30.0% | |
TCATTTATCGATGATTGTTG+TGG | + | chr7.4:10736022-10736041 | None:intergenic | 30.0% | |
TCCAATAACCTTGGTTTATT+AGG | + | chr7.4:10736354-10736373 | None:intergenic | 30.0% | |
TTACACATAGCTTCTTTACT+TGG | - | chr7.4:10734911-10734930 | MS.gene061868:intron | 30.0% | |
! | CAAAGAGGGTAACAATATTT+TGG | - | chr7.4:10735324-10735343 | MS.gene061868:CDS | 30.0% |
! | CTTTTAATGATGCATCATAG+AGG | + | chr7.4:10734805-10734824 | None:intergenic | 30.0% |
! | GATTTAGGTTATATCTTGGT+TGG | - | chr7.4:10736769-10736788 | MS.gene061868:CDS | 30.0% |
! | GCATATGCAAATGTAGTTTT+TGG | + | chr7.4:10736941-10736960 | None:intergenic | 30.0% |
! | TAAGTTTATAGTGTGGGTTT+TGG | - | chr7.4:10736651-10736670 | MS.gene061868:CDS | 30.0% |
! | TATGTTGCTTACATACATGT+GGG | - | chr7.4:10736702-10736721 | MS.gene061868:CDS | 30.0% |
! | TCGTGATTTAGGTTATATCT+TGG | - | chr7.4:10736765-10736784 | MS.gene061868:CDS | 30.0% |
! | TTAGAATTAGAGGGTCTTTT+TGG | + | chr7.4:10734856-10734875 | None:intergenic | 30.0% |
! | TTGTCTTCTAAAGACAAAGA+GGG | - | chr7.4:10735310-10735329 | MS.gene061868:CDS | 30.0% |
! | TTTGTCTTCTAAAGACAAAG+AGG | - | chr7.4:10735309-10735328 | MS.gene061868:CDS | 30.0% |
!! | TAAGCTTCATGTGTTGATTT+AGG | - | chr7.4:10736977-10736996 | MS.gene061868:CDS | 30.0% |
AAGATCATGTTAACTCACCA+AGG | - | chr7.4:10735870-10735889 | MS.gene061868:CDS | 35.0% | |
AGTTGTAGAGGATGACTAAT+CGG | + | chr7.4:10736070-10736089 | None:intergenic | 35.0% | |
ATCCTTGTTGAATCAATGAG+AGG | - | chr7.4:10735271-10735290 | MS.gene061868:CDS | 35.0% | |
GAAAACACACAAGTGCAAAA+TGG | + | chr7.4:10735227-10735246 | None:intergenic | 35.0% | |
GAAATTACACATTCATCACC+AGG | - | chr7.4:10736202-10736221 | MS.gene061868:intron | 35.0% | |
GAAGAAGATACAACAAAAGG+TGG | - | chr7.4:10736469-10736488 | MS.gene061868:intron | 35.0% | |
GCTTCACAAAAACCATAATC+AGG | + | chr7.4:10736505-10736524 | None:intergenic | 35.0% | |
TGCACTTATCAACTCCTTAA+TGG | + | chr7.4:10735152-10735171 | None:intergenic | 35.0% | |
TGGGAAGAAGATACAACAAA+AGG | - | chr7.4:10736466-10736485 | MS.gene061868:intron | 35.0% | |
TGTTGTTCATTAGCTATGCT+TGG | + | chr7.4:10736286-10736305 | None:intergenic | 35.0% | |
TTCATGAAAGAGAGTCATGT+AGG | + | chr7.4:10736918-10736937 | None:intergenic | 35.0% | |
TTGGATTTAGCTATCAAACG+AGG | - | chr7.4:10735343-10735362 | MS.gene061868:CDS | 35.0% | |
! | AGCTCTTAAAGCTTCTGTTT+TGG | + | chr7.4:10735744-10735763 | None:intergenic | 35.0% |
! | GATTATGGTTTTTGTGAAGC+AGG | - | chr7.4:10736505-10736524 | MS.gene061868:CDS | 35.0% |
! | GTATGTTGCTTACATACATG+TGG | - | chr7.4:10736701-10736720 | MS.gene061868:CDS | 35.0% |
! | TTTTGTGGAGGATCATTGTT+TGG | + | chr7.4:10735965-10735984 | None:intergenic | 35.0% |
!! | GAAGGATTTGTTAGTTGTAG+AGG | + | chr7.4:10736082-10736101 | None:intergenic | 35.0% |
!! | TCTTAAAGCTTCTGTTTTGG+AGG | + | chr7.4:10735741-10735760 | None:intergenic | 35.0% |
!!! | TGTGATGGTTGTTGATTTTG+TGG | + | chr7.4:10735980-10735999 | None:intergenic | 35.0% |
AAAATCCTCTGCCACACTAT+GGG | - | chr7.4:10737012-10737031 | MS.gene061868:CDS | 40.0% | |
AACAGAAACTATTCGGGTGA+TGG | - | chr7.4:10735180-10735199 | MS.gene061868:intron | 40.0% | |
ACCCGAATAGTTTCTGTTTC+CGG | + | chr7.4:10735178-10735197 | None:intergenic | 40.0% | |
AGTCTATTGTGACAGACAGA+AGG | - | chr7.4:10735488-10735507 | MS.gene061868:CDS | 40.0% | |
ATCGATGATTGTTGTGGTTG+TGG | + | chr7.4:10736016-10736035 | None:intergenic | 40.0% | |
ATGAACACAATAGATGGGAC+AGG | - | chr7.4:10736305-10736324 | MS.gene061868:intron | 40.0% | |
CTGCAGTTGTAGGATATGTT+TGG | - | chr7.4:10736530-10736549 | MS.gene061868:CDS | 40.0% | |
CTTACATACATGTGGGCATT+GGG | - | chr7.4:10736709-10736728 | MS.gene061868:CDS | 40.0% | |
GTATGGCTAGCAAAATCTCT+TGG | + | chr7.4:10735788-10735807 | None:intergenic | 40.0% | |
GTCCTCTCATTACAGCAAAA+TGG | + | chr7.4:10735120-10735139 | None:intergenic | 40.0% | |
TCAGTCAGTAATTAGTCCAC+CGG | - | chr7.4:10736435-10736454 | MS.gene061868:intron | 40.0% | |
TCTTGTGTAGGATCATTGTG+TGG | + | chr7.4:10736184-10736203 | None:intergenic | 40.0% | |
TGAACACAATAGATGGGACA+GGG | - | chr7.4:10736306-10736325 | MS.gene061868:intron | 40.0% | |
TGCCGGAAACAGAAACTATT+CGG | - | chr7.4:10735173-10735192 | MS.gene061868:intron | 40.0% | |
TGTTGTTCTAGTAACTGTCG+AGG | + | chr7.4:10735902-10735921 | None:intergenic | 40.0% | |
TTAGATATTTGTGGAGGACG+AGG | + | chr7.4:10736875-10736894 | None:intergenic | 40.0% | |
TTCACATCAGCTGCTAAGTT+GGG | + | chr7.4:10734974-10734993 | None:intergenic | 40.0% | |
! | ATGGCTGAGATTGATGATCA+TGG | - | chr7.4:10735199-10735218 | MS.gene061868:intron | 40.0% |
! | CTAGAATTGTGTTCTGGGTT+AGG | - | chr7.4:10736836-10736855 | MS.gene061868:CDS | 40.0% |
! | GATTGGACTAGAGTTACTTG+AGG | + | chr7.4:10736046-10736065 | None:intergenic | 40.0% |
! | GGAGGATCAATGTTTTGTGA+TGG | + | chr7.4:10735995-10736014 | None:intergenic | 40.0% |
! | TGCATCACTATGTGTGCTTT+TGG | - | chr7.4:10736600-10736619 | MS.gene061868:CDS | 40.0% |
! | TGTAATGGGGTTTCAGAGAA+TGG | + | chr7.4:10734896-10734915 | None:intergenic | 40.0% |
! | TTCATCTAGCTTCGGCAAAA+GGG | - | chr7.4:10735014-10735033 | MS.gene061868:intron | 40.0% |
!! | CTCCATTTTGCTGTAATGAG+AGG | - | chr7.4:10735115-10735134 | MS.gene061868:intron | 40.0% |
!! | CTCCTCTCATTGATTCAACA+AGG | + | chr7.4:10735276-10735295 | None:intergenic | 40.0% |
!! | GTTTATAGTGTGGGTTTTGG+CGG | - | chr7.4:10736654-10736673 | MS.gene061868:CDS | 40.0% |
!! | TCATTAGCTATGCTTGGTGT+TGG | + | chr7.4:10736280-10736299 | None:intergenic | 40.0% |
!!! | GATGGTTGTTGATTTTGTGG+AGG | + | chr7.4:10735977-10735996 | None:intergenic | 40.0% |
AACTGTCGAGGATCATTCCT+TGG | + | chr7.4:10735890-10735909 | None:intergenic | 45.0% | |
CAGTCAGTAATTAGTCCACC+GGG | - | chr7.4:10736436-10736455 | MS.gene061868:intron | 45.0% | |
GAAAATCCTCTGCCACACTA+TGG | - | chr7.4:10737011-10737030 | MS.gene061868:CDS | 45.0% | |
GAGGATGACTAATCGGTGAT+TGG | + | chr7.4:10736063-10736082 | None:intergenic | 45.0% | |
GATGATTGTTGTGGTTGTGG+AGG | + | chr7.4:10736013-10736032 | None:intergenic | 45.0% | |
GATGGTGATTGTGGATGTTG+AGG | + | chr7.4:10736160-10736179 | None:intergenic | 45.0% | |
GCCGGAAACAGAAACTATTC+GGG | - | chr7.4:10735174-10735193 | MS.gene061868:intron | 45.0% | |
GCTTACATACATGTGGGCAT+TGG | - | chr7.4:10736708-10736727 | MS.gene061868:CDS | 45.0% | |
GGTGGTTGTGAAGGACTATT+GGG | + | chr7.4:10736109-10736128 | None:intergenic | 45.0% | |
GGTTACGCTTGTCCTGATTA+TGG | - | chr7.4:10736490-10736509 | MS.gene061868:CDS | 45.0% | |
GTAGGATCATTGTGTGGTGA+TGG | + | chr7.4:10736178-10736197 | None:intergenic | 45.0% | |
GTTAGTGAGGGATTGTGAGA+TGG | + | chr7.4:10736130-10736149 | None:intergenic | 45.0% | |
GTTCACATCAGCTGCTAAGT+TGG | + | chr7.4:10734975-10734994 | None:intergenic | 45.0% | |
TCGCGAATCAAGCAAGTTTC+TGG | + | chr7.4:10735076-10735095 | None:intergenic | 45.0% | |
TGGTGGTTGTGAAGGACTAT+TGG | + | chr7.4:10736110-10736129 | None:intergenic | 45.0% | |
TTGCCGAAGCTAGATGAAGA+GGG | + | chr7.4:10735012-10735031 | None:intergenic | 45.0% | |
TTGTGGATGTTGAGGCTCAT+TGG | + | chr7.4:10736152-10736171 | None:intergenic | 45.0% | |
TTTGCCGAAGCTAGATGAAG+AGG | + | chr7.4:10735013-10735032 | None:intergenic | 45.0% | |
! | CTTCATCTAGCTTCGGCAAA+AGG | - | chr7.4:10735013-10735032 | MS.gene061868:intron | 45.0% |
! | GTGGCAGAGGATTTTCAGAA+AGG | + | chr7.4:10737007-10737026 | None:intergenic | 45.0% |
! | TGAGGCTCATTGGTTAGTGA+GGG | + | chr7.4:10736142-10736161 | None:intergenic | 45.0% |
! | TTGAGGCTCATTGGTTAGTG+AGG | + | chr7.4:10736143-10736162 | None:intergenic | 45.0% |
! | TTGCCCTCTTCATCTAGCTT+CGG | - | chr7.4:10735006-10735025 | MS.gene061868:intron | 45.0% |
! | TTGTGAGATGGTGGTTGTGA+AGG | + | chr7.4:10736118-10736137 | None:intergenic | 45.0% |
! | TTGTGTTCTGGGTTAGGTCT+AGG | - | chr7.4:10736842-10736861 | MS.gene061868:CDS | 45.0% |
!! | CTATGCTTGGTGTTGGTGAA+GGG | + | chr7.4:10736273-10736292 | None:intergenic | 45.0% |
!! | GGAGTTGATAAGTGCAATGC+CGG | - | chr7.4:10735156-10735175 | MS.gene061868:intron | 45.0% |
!! | TTGTGTGGTGATGGTGATTG+TGG | + | chr7.4:10736169-10736188 | None:intergenic | 45.0% |
!!! | GTGCTTTTGGTTCTCGTAAG+TGG | - | chr7.4:10736613-10736632 | MS.gene061868:CDS | 45.0% |
AGGACGCGTAGGAACCATTA+AGG | - | chr7.4:10735135-10735154 | MS.gene061868:intron | 50.0% | |
AGTGAGGGATTGTGAGATGG+TGG | + | chr7.4:10736127-10736146 | None:intergenic | 50.0% | |
GAAGCAGGAACTGCAGTTGT+AGG | - | chr7.4:10736520-10736539 | MS.gene061868:CDS | 50.0% | |
GAAGGACTATTGGGTGGTGA+AGG | + | chr7.4:10736100-10736119 | None:intergenic | 50.0% | |
GCAGCTGATGTGAACTCAGA+AGG | - | chr7.4:10734980-10734999 | MS.gene061868:CDS | 50.0% | |
GGTTGTGAAGGACTATTGGG+TGG | + | chr7.4:10736106-10736125 | None:intergenic | 50.0% | |
GTGGTGGTTGTAGAGGATTG+AGG | + | chr7.4:10736228-10736247 | None:intergenic | 50.0% | |
TCAGTAATTAGTCCACCGGG+CGG | - | chr7.4:10736439-10736458 | MS.gene061868:intron | 50.0% | |
TCCAAGTGCTTCCCATAGTG+TGG | + | chr7.4:10737026-10737045 | None:intergenic | 50.0% | |
! | TCACTTGGTGAGAATGGTGG+TGG | + | chr7.4:10736247-10736266 | None:intergenic | 50.0% |
! | TCGTCACTTGGTGAGAATGG+TGG | + | chr7.4:10736250-10736269 | None:intergenic | 50.0% |
!! | AATGGTGGTGGTGGTTGTAG+AGG | + | chr7.4:10736235-10736254 | None:intergenic | 50.0% |
!! | GCTATGCTTGGTGTTGGTGA+AGG | + | chr7.4:10736274-10736293 | None:intergenic | 50.0% |
GCTGTAATGAGAGGACGCGT+AGG | - | chr7.4:10735124-10735143 | MS.gene061868:intron | 55.0% | |
GGTTGTAGAGGATTGAGGCC+TGG | + | chr7.4:10736223-10736242 | None:intergenic | 55.0% | |
TCTTCTTCCCAAACACCGCC+CGG | + | chr7.4:10736457-10736476 | None:intergenic | 55.0% | |
TGCTTCCCATAGTGTGGCAG+AGG | + | chr7.4:10737020-10737039 | None:intergenic | 55.0% | |
! | GGGTCGTCACTTGGTGAGAA+TGG | + | chr7.4:10736253-10736272 | None:intergenic | 55.0% |
! | GTTGGTGAAGGGTCGTCACT+TGG | + | chr7.4:10736262-10736281 | None:intergenic | 55.0% |
!! | CTTGGTGAGAATGGTGGTGG+TGG | + | chr7.4:10736244-10736263 | None:intergenic | 55.0% |
!! | GCCACACTATGGGAAGCACT+TGG | - | chr7.4:10737022-10737041 | MS.gene061868:CDS | 55.0% |
TAGTCCACCGGGCGGTGTTT+GGG | - | chr7.4:10736447-10736466 | MS.gene061868:intron | 60.0% | |
TTAGTCCACCGGGCGGTGTT+TGG | - | chr7.4:10736446-10736465 | MS.gene061868:intron | 60.0% | |
! | TCTGGGTTAGGTCTAGGCGC+AGG | - | chr7.4:10736848-10736867 | MS.gene061868:CDS | 60.0% |
TCTTCCCAAACACCGCCCGG+TGG | + | chr7.4:10736454-10736473 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 10734794 | 10737064 | 10734794 | ID=MS.gene061868 |
chr7.4 | mRNA | 10734794 | 10737064 | 10734794 | ID=MS.gene061868.t1;Parent=MS.gene061868 |
chr7.4 | exon | 10736483 | 10737064 | 10736483 | ID=MS.gene061868.t1.exon1;Parent=MS.gene061868.t1 |
chr7.4 | CDS | 10736483 | 10737064 | 10736483 | ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1 |
chr7.4 | exon | 10735231 | 10736169 | 10735231 | ID=MS.gene061868.t1.exon2;Parent=MS.gene061868.t1 |
chr7.4 | CDS | 10735231 | 10736169 | 10735231 | ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1 |
chr7.4 | exon | 10734948 | 10735022 | 10734948 | ID=MS.gene061868.t1.exon3;Parent=MS.gene061868.t1 |
chr7.4 | CDS | 10734948 | 10735022 | 10734948 | ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1 |
chr7.4 | exon | 10734794 | 10734859 | 10734794 | ID=MS.gene061868.t1.exon4;Parent=MS.gene061868.t1 |
chr7.4 | CDS | 10734794 | 10734859 | 10734794 | ID=cds.MS.gene061868.t1;Parent=MS.gene061868.t1 |
Gene Sequence |
Protein sequence |