Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061871.t1 | XP_003625478.1 | 94.5 | 509 | 27 | 1 | 1 | 508 | 6 | 514 | 1.10E-153 | 553.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061871.t1 | A2Q5K6 | 94.5 | 509 | 27 | 1 | 1 | 508 | 6 | 514 | 7.9e-154 | 553.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81951 | MS.gene061871 | PPI |
MS.gene02648 | MS.gene061871 | PPI |
MS.gene013681 | MS.gene061871 | PPI |
MS.gene02491 | MS.gene061871 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061871.t1 | MTR_7g099570 | 94.499 | 509 | 27 | 1 | 1 | 508 | 6 | 514 | 0.0 | 897 |
MS.gene061871.t1 | MTR_7g099580 | 68.205 | 195 | 61 | 1 | 1 | 194 | 9 | 203 | 5.92e-86 | 270 |
MS.gene061871.t1 | MTR_7g099580 | 78.723 | 47 | 10 | 0 | 419 | 465 | 238 | 284 | 5.81e-17 | 82.8 |
MS.gene061871.t1 | MTR_1g069110 | 37.901 | 343 | 158 | 5 | 1 | 339 | 15 | 306 | 2.04e-58 | 201 |
MS.gene061871.t1 | MTR_1g069110 | 50.000 | 128 | 60 | 2 | 381 | 508 | 236 | 359 | 5.37e-34 | 134 |
MS.gene061871.t1 | MTR_7g099550 | 57.143 | 105 | 40 | 1 | 63 | 167 | 136 | 235 | 2.95e-29 | 116 |
MS.gene061871.t1 | MTR_2g101320 | 25.231 | 432 | 247 | 10 | 32 | 461 | 134 | 491 | 1.45e-23 | 105 |
MS.gene061871.t1 | MTR_2g101310 | 26.426 | 333 | 221 | 9 | 32 | 360 | 134 | 446 | 1.92e-21 | 98.6 |
MS.gene061871.t1 | MTR_2g101310 | 26.426 | 333 | 221 | 9 | 32 | 360 | 134 | 446 | 2.65e-21 | 97.8 |
MS.gene061871.t1 | MTR_7g021090 | 28.251 | 223 | 146 | 3 | 4 | 217 | 9 | 226 | 8.09e-20 | 92.4 |
MS.gene061871.t1 | MTR_1g059930 | 30.526 | 190 | 118 | 4 | 4 | 184 | 12 | 196 | 3.65e-19 | 90.5 |
MS.gene061871.t1 | MTR_8g072510 | 29.834 | 181 | 113 | 3 | 16 | 187 | 22 | 197 | 5.81e-18 | 87.0 |
MS.gene061871.t1 | MTR_8g073260 | 28.571 | 203 | 131 | 5 | 7 | 200 | 14 | 211 | 6.52e-18 | 87.0 |
MS.gene061871.t1 | MTR_8g068990 | 28.378 | 222 | 134 | 3 | 7 | 220 | 15 | 219 | 8.95e-18 | 86.7 |
MS.gene061871.t1 | MTR_3g016210 | 29.834 | 181 | 113 | 4 | 16 | 187 | 22 | 197 | 1.07e-17 | 86.3 |
MS.gene061871.t1 | MTR_8g062410 | 30.102 | 196 | 123 | 3 | 4 | 190 | 10 | 200 | 3.00e-17 | 84.7 |
MS.gene061871.t1 | MTR_8g069880 | 31.579 | 190 | 116 | 4 | 7 | 187 | 10 | 194 | 3.48e-17 | 84.7 |
MS.gene061871.t1 | MTR_8g039620 | 27.536 | 207 | 136 | 3 | 4 | 201 | 14 | 215 | 2.82e-16 | 81.6 |
MS.gene061871.t1 | MTR_1g115575 | 28.082 | 292 | 177 | 10 | 4 | 287 | 135 | 401 | 4.79e-16 | 81.6 |
MS.gene061871.t1 | MTR_7g451420 | 30.000 | 190 | 119 | 3 | 7 | 187 | 12 | 196 | 5.18e-16 | 79.7 |
MS.gene061871.t1 | MTR_7g100390 | 30.542 | 203 | 125 | 5 | 2 | 199 | 82 | 273 | 1.03e-15 | 80.5 |
MS.gene061871.t1 | MTR_8g467780 | 30.159 | 189 | 118 | 3 | 7 | 186 | 14 | 197 | 1.42e-14 | 76.6 |
MS.gene061871.t1 | MTR_2g096190 | 29.902 | 204 | 127 | 5 | 2 | 200 | 99 | 291 | 2.49e-14 | 76.3 |
MS.gene061871.t1 | MTR_3g105650 | 28.022 | 182 | 117 | 3 | 16 | 188 | 17 | 193 | 5.82e-14 | 74.3 |
MS.gene061871.t1 | MTR_4g062100 | 28.063 | 253 | 155 | 7 | 4 | 250 | 74 | 305 | 7.76e-14 | 74.7 |
MS.gene061871.t1 | MTR_1g032100 | 27.700 | 213 | 142 | 5 | 39 | 250 | 94 | 295 | 1.25e-13 | 73.9 |
MS.gene061871.t1 | MTR_8g066670 | 24.436 | 266 | 177 | 6 | 16 | 264 | 1087 | 1345 | 4.69e-13 | 72.8 |
MS.gene061871.t1 | MTR_8g105260 | 27.230 | 213 | 143 | 5 | 39 | 250 | 101 | 302 | 6.05e-13 | 71.6 |
MS.gene061871.t1 | MTR_7g100430 | 26.275 | 255 | 162 | 6 | 39 | 289 | 161 | 393 | 8.82e-12 | 68.2 |
MS.gene061871.t1 | MTR_7g117620 | 37.391 | 115 | 66 | 2 | 2 | 112 | 114 | 226 | 2.07e-11 | 67.0 |
MS.gene061871.t1 | MTR_7g117620 | 25.359 | 209 | 117 | 5 | 37 | 214 | 82 | 282 | 9.12e-11 | 64.7 |
MS.gene061871.t1 | MTR_7g087540 | 51.471 | 68 | 29 | 4 | 414 | 480 | 25 | 89 | 2.44e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061871.t1 | AT4G10720 | 29.961 | 257 | 162 | 8 | 4 | 250 | 5 | 253 | 9.84e-21 | 95.1 |
MS.gene061871.t1 | AT5G54610 | 32.569 | 218 | 134 | 5 | 11 | 220 | 12 | 224 | 1.25e-20 | 95.1 |
MS.gene061871.t1 | AT4G10720 | 29.961 | 257 | 162 | 8 | 4 | 250 | 5 | 253 | 2.18e-20 | 94.4 |
MS.gene061871.t1 | AT5G54620 | 30.876 | 217 | 136 | 4 | 2 | 209 | 3 | 214 | 4.55e-20 | 93.2 |
MS.gene061871.t1 | AT1G14480 | 29.612 | 206 | 131 | 5 | 4 | 200 | 5 | 205 | 1.52e-17 | 85.9 |
MS.gene061871.t1 | AT5G51160 | 30.612 | 196 | 116 | 6 | 65 | 250 | 42 | 227 | 4.27e-17 | 84.3 |
MS.gene061871.t1 | AT5G15500 | 25.993 | 277 | 184 | 6 | 2 | 262 | 4 | 275 | 7.85e-17 | 83.6 |
MS.gene061871.t1 | AT2G31820 | 32.843 | 204 | 118 | 6 | 4 | 202 | 193 | 382 | 9.72e-17 | 84.0 |
MS.gene061871.t1 | AT1G14500 | 28.079 | 203 | 132 | 3 | 7 | 200 | 8 | 205 | 1.72e-16 | 82.4 |
MS.gene061871.t1 | AT1G14480 | 31.707 | 164 | 103 | 3 | 4 | 163 | 5 | 163 | 2.72e-16 | 81.6 |
MS.gene061871.t1 | AT1G07710 | 29.279 | 222 | 106 | 6 | 2 | 217 | 99 | 275 | 1.43e-13 | 73.9 |
MS.gene061871.t1 | AT1G07710 | 29.279 | 222 | 106 | 6 | 2 | 217 | 99 | 275 | 1.43e-13 | 73.9 |
MS.gene061871.t1 | AT3G12360 | 27.891 | 294 | 175 | 10 | 4 | 287 | 133 | 399 | 2.75e-13 | 73.2 |
MS.gene061871.t1 | AT3G12360 | 27.891 | 294 | 175 | 10 | 4 | 287 | 121 | 387 | 2.89e-13 | 72.8 |
MS.gene061871.t1 | AT5G60070 | 29.048 | 210 | 100 | 6 | 2 | 206 | 106 | 271 | 4.84e-13 | 72.0 |
MS.gene061871.t1 | AT3G13950 | 39.655 | 116 | 65 | 3 | 397 | 508 | 4 | 118 | 9.04e-13 | 68.2 |
MS.gene061871.t1 | AT5G50140 | 23.894 | 339 | 213 | 12 | 35 | 353 | 26 | 339 | 1.05e-12 | 70.9 |
MS.gene061871.t1 | AT5G02620 | 26.855 | 283 | 174 | 10 | 4 | 279 | 60 | 316 | 2.24e-12 | 70.1 |
MS.gene061871.t1 | AT5G02620 | 26.855 | 283 | 174 | 10 | 4 | 279 | 60 | 316 | 2.24e-12 | 70.1 |
MS.gene061871.t1 | AT5G02620 | 26.855 | 283 | 174 | 10 | 4 | 279 | 60 | 316 | 2.24e-12 | 70.1 |
MS.gene061871.t1 | AT1G05640 | 29.317 | 249 | 144 | 8 | 39 | 282 | 191 | 412 | 4.17e-12 | 69.3 |
MS.gene061871.t1 | AT3G09550 | 25.597 | 293 | 187 | 9 | 4 | 289 | 154 | 422 | 1.52e-11 | 67.4 |
MS.gene061871.t1 | AT3G09550 | 25.597 | 293 | 187 | 9 | 4 | 289 | 147 | 415 | 1.53e-11 | 67.4 |
MS.gene061871.t1 | AT3G09550 | 25.597 | 293 | 187 | 9 | 4 | 289 | 147 | 415 | 1.53e-11 | 67.4 |
Find 113 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAGAGGGTAACAATATTT+TGG | 0.140494 | 7.4:-10709338 | MS.gene061871:CDS |
TCGCGAATCAAGCAAGTTTC+TGG | 0.144507 | 7.4:+10709589 | None:intergenic |
TGCACTTATCAACTCCTTAA+TGG | 0.167211 | 7.4:+10709513 | None:intergenic |
TCCAATAACCTTGGTTTATT+AGG | 0.187112 | 7.4:+10708311 | None:intergenic |
ACCTAATAAACCAAGGTTAT+TGG | 0.210805 | 7.4:-10708312 | MS.gene061871:CDS |
CTCTATGATGCATCATTAAA+AGG | 0.232530 | 7.4:-10709859 | MS.gene061871:CDS |
ACCCGAATAGTTTCTGTTTC+CGG | 0.272426 | 7.4:+10709487 | None:intergenic |
AACAACATGAACACAATAGA+TGG | 0.289553 | 7.4:-10708363 | MS.gene061871:CDS |
AAAGACAAGAGAACAATTAA+TGG | 0.291148 | 7.4:-10708281 | MS.gene061871:CDS |
TGCATCACTATGTGTGCTTT+TGG | 0.293332 | 7.4:-10708062 | MS.gene061871:CDS |
GGTTACGCTTGTCCTGATTA+TGG | 0.311723 | 7.4:-10708172 | MS.gene061871:CDS |
GTAAAGAAGCTATGTGTAAT+GGG | 0.322353 | 7.4:+10709755 | None:intergenic |
GAAAATCCTCTGCCACACTA+TGG | 0.322481 | 7.4:-10707651 | MS.gene061871:CDS |
TATCAAACGAGGACAAATTA+AGG | 0.325515 | 7.4:-10709308 | MS.gene061871:intron |
AGCTCTTAAAGCTTCTGTTT+TGG | 0.341636 | 7.4:+10708921 | None:intergenic |
TGCCGGAAACAGAAACTATT+CGG | 0.348258 | 7.4:-10709489 | MS.gene061871:CDS |
CTAGAATTGTGTTCTGGGTT+AGG | 0.351230 | 7.4:-10707826 | MS.gene061871:CDS |
GAAAACACACAAGTGCAAAA+TGG | 0.355298 | 7.4:+10709438 | None:intergenic |
AAATAGCTAGAATTGTGTTC+TGG | 0.368470 | 7.4:-10707832 | MS.gene061871:intron |
TTAGTCCACCGGGCGGTGTT+TGG | 0.379011 | 7.4:-10708216 | MS.gene061871:CDS |
AAAATGAATTTAAGATAATC+TGG | 0.381714 | 7.4:+10708106 | None:intergenic |
TAGTCCACCGGGCGGTGTTT+GGG | 0.381761 | 7.4:-10708215 | MS.gene061871:CDS |
TTACACATAGCTTCTTTACT+TGG | 0.383128 | 7.4:-10709751 | MS.gene061871:CDS |
TGGTGGTTGTGAAGGACTAT+TGG | 0.387197 | 7.4:+10708555 | None:intergenic |
CTTCATCTAGCTTCGGCAAA+AGG | 0.398211 | 7.4:-10709649 | MS.gene061871:CDS |
GTCCTCTCATTACAGCAAAA+TGG | 0.410295 | 7.4:+10709545 | None:intergenic |
GAAACTCTACTTAGAATTAG+AGG | 0.414613 | 7.4:+10709799 | None:intergenic |
GGTGGTTGTGAAGGACTATT+GGG | 0.420600 | 7.4:+10708556 | None:intergenic |
AGGACGCGTAGGAACCATTA+AGG | 0.421682 | 7.4:-10709527 | MS.gene061871:CDS |
AATAGCTAGAATTGTGTTCT+GGG | 0.426330 | 7.4:-10707831 | MS.gene061871:intron |
TTCACATCAGCTGCTAAGTT+GGG | 0.430939 | 7.4:+10709691 | None:intergenic |
AGTAAAGAAGCTATGTGTAA+TGG | 0.433633 | 7.4:+10709754 | None:intergenic |
ATCGATGATTGTTGTGGTTG+TGG | 0.434864 | 7.4:+10708649 | None:intergenic |
TTGTGTTCTGGGTTAGGTCT+AGG | 0.438558 | 7.4:-10707820 | MS.gene061871:CDS |
TTTAAGAGCTTTATATATGT+TGG | 0.440411 | 7.4:-10708908 | MS.gene061871:CDS |
CTGCAGTTGTAGGATATGTT+TGG | 0.441485 | 7.4:-10708132 | MS.gene061871:CDS |
TGTAATGGGGTTTCAGAGAA+TGG | 0.449861 | 7.4:+10709769 | None:intergenic |
GTTCACATCAGCTGCTAAGT+TGG | 0.450012 | 7.4:+10709690 | None:intergenic |
ATCTAAGTTAAAAGTAGAAA+AGG | 0.458916 | 7.4:-10707773 | MS.gene061871:intron |
TTGTGTGGTGATGGTGATTG+TGG | 0.460725 | 7.4:+10708496 | None:intergenic |
AGTTGTAGAGGATGACTAAT+CGG | 0.467947 | 7.4:+10708595 | None:intergenic |
TTGCCCTCTTCATCTAGCTT+CGG | 0.469951 | 7.4:-10709656 | MS.gene061871:CDS |
TGTTGTTCATTAGCTATGCT+TGG | 0.473040 | 7.4:+10708379 | None:intergenic |
GCCGGAAACAGAAACTATTC+GGG | 0.478264 | 7.4:-10709488 | MS.gene061871:CDS |
GAAGCAGGAACTGCAGTTGT+AGG | 0.479785 | 7.4:-10708142 | MS.gene061871:CDS |
TCATTAGCTATGCTTGGTGT+TGG | 0.483018 | 7.4:+10708385 | None:intergenic |
TTGTGGATGTTGAGGCTCAT+TGG | 0.485922 | 7.4:+10708513 | None:intergenic |
TTCATCTAGCTTCGGCAAAA+GGG | 0.485961 | 7.4:-10709648 | MS.gene061871:CDS |
TCAGTCAGTAATTAGTCCAC+CGG | 0.487845 | 7.4:-10708227 | MS.gene061871:CDS |
GTATGGCTAGCAAAATCTCT+TGG | 0.489498 | 7.4:+10708877 | None:intergenic |
GAGGATGACTAATCGGTGAT+TGG | 0.491854 | 7.4:+10708602 | None:intergenic |
TCAAAATGTGTTGAATTGTA+TGG | 0.493536 | 7.4:+10708860 | None:intergenic |
GCTATGCTTGGTGTTGGTGA+AGG | 0.497302 | 7.4:+10708391 | None:intergenic |
GGGTCGTCACTTGGTGAGAA+TGG | 0.511325 | 7.4:+10708412 | None:intergenic |
AAAATCCTCTGCCACACTAT+GGG | 0.517000 | 7.4:-10707650 | MS.gene061871:CDS |
GAAGGATTTGTTAGTTGTAG+AGG | 0.529973 | 7.4:+10708583 | None:intergenic |
AACTGTCGAGGATCATTCCT+TGG | 0.530579 | 7.4:+10708775 | None:intergenic |
GGAGTTGATAAGTGCAATGC+CGG | 0.532038 | 7.4:-10709506 | MS.gene061871:CDS |
TGCTTCCCATAGTGTGGCAG+AGG | 0.532654 | 7.4:+10707645 | None:intergenic |
GAACAACATTCACAAATCAA+TGG | 0.538302 | 7.4:-10708748 | MS.gene061871:CDS |
TTGTGAGATGGTGGTTGTGA+AGG | 0.538920 | 7.4:+10708547 | None:intergenic |
AGTGAGGGATTGTGAGATGG+TGG | 0.541315 | 7.4:+10708538 | None:intergenic |
CTTGGTGAGAATGGTGGTGG+TGG | 0.543098 | 7.4:+10708421 | None:intergenic |
TGGGAAGAAGATACAACAAA+AGG | 0.543938 | 7.4:-10708196 | MS.gene061871:CDS |
CTCCTCTCATTGATTCAACA+AGG | 0.545286 | 7.4:+10709389 | None:intergenic |
AACAGAAACTATTCGGGTGA+TGG | 0.549369 | 7.4:-10709482 | MS.gene061871:CDS |
TCTTCTTCCCAAACACCGCC+CGG | 0.555882 | 7.4:+10708208 | None:intergenic |
GCCACACTATGGGAAGCACT+TGG | 0.556613 | 7.4:-10707640 | MS.gene061871:CDS |
AATGGTGGTGGTGGTTGTAG+AGG | 0.556799 | 7.4:+10708430 | None:intergenic |
TTTGTCTTCTAAAGACAAAG+AGG | 0.558670 | 7.4:-10709353 | MS.gene061871:CDS |
ATGAACACAATAGATGGGAC+AGG | 0.562692 | 7.4:-10708357 | MS.gene061871:CDS |
GAAGGACTATTGGGTGGTGA+AGG | 0.565122 | 7.4:+10708565 | None:intergenic |
TTGAGGCTCATTGGTTAGTG+AGG | 0.568784 | 7.4:+10708522 | None:intergenic |
CTATGCTTGGTGTTGGTGAA+GGG | 0.569653 | 7.4:+10708392 | None:intergenic |
TCCAAGTGCTTCCCATAGTG+TGG | 0.571682 | 7.4:+10707639 | None:intergenic |
GTAGGATCATTGTGTGGTGA+TGG | 0.571721 | 7.4:+10708487 | None:intergenic |
CAGTCAGTAATTAGTCCACC+GGG | 0.572133 | 7.4:-10708226 | MS.gene061871:CDS |
TGAGGCTCATTGGTTAGTGA+GGG | 0.573688 | 7.4:+10708523 | None:intergenic |
GGTTGTAGAGGATTGAGGCC+TGG | 0.573875 | 7.4:+10708442 | None:intergenic |
TTGTCTTCTAAAGACAAAGA+GGG | 0.575204 | 7.4:-10709352 | MS.gene061871:CDS |
TTAGATATTTGTGGAGGACG+AGG | 0.576543 | 7.4:+10707790 | None:intergenic |
GCAGCTGATGTGAACTCAGA+AGG | 0.582169 | 7.4:-10709682 | MS.gene061871:CDS |
GTTGGTGAAGGGTCGTCACT+TGG | 0.585627 | 7.4:+10708403 | None:intergenic |
ATGGCTGAGATTGATGATCA+TGG | 0.588724 | 7.4:-10709463 | MS.gene061871:CDS |
AAACTCTACTTAGAATTAGA+GGG | 0.589124 | 7.4:+10709800 | None:intergenic |
GTGGTGGTTGTAGAGGATTG+AGG | 0.597688 | 7.4:+10708437 | None:intergenic |
TCACTTGGTGAGAATGGTGG+TGG | 0.599059 | 7.4:+10708418 | None:intergenic |
GATGGTGATTGTGGATGTTG+AGG | 0.600949 | 7.4:+10708505 | None:intergenic |
TCATTTATCGATGATTGTTG+TGG | 0.602451 | 7.4:+10708643 | None:intergenic |
TTTGCCGAAGCTAGATGAAG+AGG | 0.604364 | 7.4:+10709652 | None:intergenic |
ATCCTTGTTGAATCAATGAG+AGG | 0.608497 | 7.4:-10709391 | MS.gene061871:CDS |
ACAACATGAACACAATAGAT+GGG | 0.609468 | 7.4:-10708362 | MS.gene061871:CDS |
TCTGGGTTAGGTCTAGGCGC+AGG | 0.609783 | 7.4:-10707814 | MS.gene061871:CDS |
GAATGTGTAATTTCTTGTGT+AGG | 0.616234 | 7.4:+10708469 | None:intergenic |
TTGCCGAAGCTAGATGAAGA+GGG | 0.617908 | 7.4:+10709653 | None:intergenic |
GGTTGTGAAGGACTATTGGG+TGG | 0.622829 | 7.4:+10708559 | None:intergenic |
GTTAGTGAGGGATTGTGAGA+TGG | 0.623672 | 7.4:+10708535 | None:intergenic |
GAAGAAGATACAACAAAAGG+TGG | 0.625546 | 7.4:-10708193 | MS.gene061871:CDS |
GCTGTAATGAGAGGACGCGT+AGG | 0.625908 | 7.4:-10709538 | MS.gene061871:CDS |
TCGTCACTTGGTGAGAATGG+TGG | 0.634283 | 7.4:+10708415 | None:intergenic |
TTTAACTTAGATATTTGTGG+AGG | 0.636829 | 7.4:+10707784 | None:intergenic |
GATTGGACTAGAGTTACTTG+AGG | 0.640890 | 7.4:+10708619 | None:intergenic |
AACAAATACCTAATAAACCA+AGG | 0.645161 | 7.4:-10708319 | MS.gene061871:CDS |
TAAAGAAGCTATGTGTAATG+GGG | 0.652798 | 7.4:+10709756 | None:intergenic |
GAAATTACACATTCATCACC+AGG | 0.657014 | 7.4:-10708460 | MS.gene061871:CDS |
AAGATCATGTTAACTCACCA+AGG | 0.659607 | 7.4:-10708792 | MS.gene061871:CDS |
TGTTGTTCTAGTAACTGTCG+AGG | 0.660930 | 7.4:+10708763 | None:intergenic |
GATGATTGTTGTGGTTGTGG+AGG | 0.661128 | 7.4:+10708652 | None:intergenic |
TCTTCCCAAACACCGCCCGG+TGG | 0.662288 | 7.4:+10708211 | None:intergenic |
TCTTGTGTAGGATCATTGTG+TGG | 0.698697 | 7.4:+10708481 | None:intergenic |
TGAACACAATAGATGGGACA+GGG | 0.709494 | 7.4:-10708356 | MS.gene061871:CDS |
TTGGATTTAGCTATCAAACG+AGG | 0.710414 | 7.4:-10709319 | MS.gene061871:CDS |
TCAGTAATTAGTCCACCGGG+CGG | 0.788117 | 7.4:-10708223 | MS.gene061871:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATAAAAGAAAACTACA+AGG | - | chr7.4:10708402-10708421 | MS.gene061871:CDS | 15.0% |
!!! | AAAATGAATTTAAGATAATC+TGG | + | chr7.4:10709385-10709404 | None:intergenic | 15.0% |
!! | ACTATAAACTTATTATGAAG+AGG | + | chr7.4:10709469-10709488 | None:intergenic | 20.0% |
!! | ATCCAATTATTCATATGAAA+AGG | + | chr7.4:10708460-10708479 | None:intergenic | 20.0% |
!! | ATCTAAGTTAAAAGTAGAAA+AGG | - | chr7.4:10709715-10709734 | MS.gene061871:CDS | 20.0% |
!! | ATTCTATAGAAAATGTGATT+AGG | + | chr7.4:10709571-10709590 | None:intergenic | 20.0% |
!! | TCATAATAAGTTTATAGTGT+GGG | - | chr7.4:10709471-10709490 | MS.gene061871:CDS | 20.0% |
!! | TTCATAATAAGTTTATAGTG+TGG | - | chr7.4:10709470-10709489 | MS.gene061871:CDS | 20.0% |
!!! | AACCTTTTCATATGAATAAT+TGG | - | chr7.4:10708455-10708474 | MS.gene061871:CDS | 20.0% |
!!! | ACTTTTAACTTAGATATTTG+TGG | + | chr7.4:10709710-10709729 | None:intergenic | 20.0% |
!!! | TTTAAGAGCTTTATATATGT+TGG | - | chr7.4:10708580-10708599 | MS.gene061871:CDS | 20.0% |
!!! | TTTCAACAACAGATAAATTT+TGG | - | chr7.4:10708211-10708230 | MS.gene061871:CDS | 20.0% |
! | AAACTCTACTTAGAATTAGA+GGG | + | chr7.4:10707691-10707710 | None:intergenic | 25.0% |
! | AAAGACAAGAGAACAATTAA+TGG | - | chr7.4:10709207-10709226 | MS.gene061871:intron | 25.0% |
! | AACAAATACCTAATAAACCA+AGG | - | chr7.4:10709169-10709188 | MS.gene061871:intron | 25.0% |
! | ATTCATATGAAAAGGTTTCA+AGG | + | chr7.4:10708452-10708471 | None:intergenic | 25.0% |
! | TCAAAATGTGTTGAATTGTA+TGG | + | chr7.4:10708631-10708650 | None:intergenic | 25.0% |
! | TTCATATGAAAAGGTTTCAA+GGG | + | chr7.4:10708451-10708470 | None:intergenic | 25.0% |
! | TTCTATAGAATTCGTGATTT+AGG | - | chr7.4:10709580-10709599 | MS.gene061871:CDS | 25.0% |
!! | TGTTTTCTATAATCATCTAG+AGG | - | chr7.4:10708066-10708085 | MS.gene061871:CDS | 25.0% |
!! | TTTAACTTAGATATTTGTGG+AGG | + | chr7.4:10709707-10709726 | None:intergenic | 25.0% |
!! | TTTTATCTATCCAATAACCT+TGG | + | chr7.4:10709189-10709208 | None:intergenic | 25.0% |
AAATAGCTAGAATTGTGTTC+TGG | - | chr7.4:10709656-10709675 | MS.gene061871:CDS | 30.0% | |
AACAACATGAACACAATAGA+TGG | - | chr7.4:10709125-10709144 | MS.gene061871:intron | 30.0% | |
AAGCTTAAATTGATAGGAGT+TGG | + | chr7.4:10709790-10709809 | None:intergenic | 30.0% | |
AATAGCTAGAATTGTGTTCT+GGG | - | chr7.4:10709657-10709676 | MS.gene061871:CDS | 30.0% | |
ACAACATGAACACAATAGAT+GGG | - | chr7.4:10709126-10709145 | MS.gene061871:intron | 30.0% | |
ACCTAATAAACCAAGGTTAT+TGG | - | chr7.4:10709176-10709195 | MS.gene061871:intron | 30.0% | |
AGCTTAAATTGATAGGAGTT+GGG | + | chr7.4:10709789-10709808 | None:intergenic | 30.0% | |
AGTAAAGAAGCTATGTGTAA+TGG | + | chr7.4:10707737-10707756 | None:intergenic | 30.0% | |
CACATGAAGCTTAAATTGAT+AGG | + | chr7.4:10709796-10709815 | None:intergenic | 30.0% | |
CTCTATGATGCATCATTAAA+AGG | - | chr7.4:10707629-10707648 | MS.gene061871:CDS | 30.0% | |
GAAACTCTACTTAGAATTAG+AGG | + | chr7.4:10707692-10707711 | None:intergenic | 30.0% | |
GAACAACATTCACAAATCAA+TGG | - | chr7.4:10708740-10708759 | MS.gene061871:CDS | 30.0% | |
GAATGTGTAATTTCTTGTGT+AGG | + | chr7.4:10709022-10709041 | None:intergenic | 30.0% | |
GTAAAGAAGCTATGTGTAAT+GGG | + | chr7.4:10707736-10707755 | None:intergenic | 30.0% | |
GTTATATCTTGGTTGGAATT+TGG | - | chr7.4:10709602-10709621 | MS.gene061871:CDS | 30.0% | |
TAAAGAAGCTATGTGTAATG+GGG | + | chr7.4:10707735-10707754 | None:intergenic | 30.0% | |
TATCAAACGAGGACAAATTA+AGG | - | chr7.4:10708180-10708199 | MS.gene061871:CDS | 30.0% | |
TCATTTATCGATGATTGTTG+TGG | + | chr7.4:10708848-10708867 | None:intergenic | 30.0% | |
TCCAATAACCTTGGTTTATT+AGG | + | chr7.4:10709180-10709199 | None:intergenic | 30.0% | |
TTACACATAGCTTCTTTACT+TGG | - | chr7.4:10707737-10707756 | MS.gene061871:intron | 30.0% | |
! | CAAAGAGGGTAACAATATTT+TGG | - | chr7.4:10708150-10708169 | MS.gene061871:CDS | 30.0% |
! | CTTTTAATGATGCATCATAG+AGG | + | chr7.4:10707631-10707650 | None:intergenic | 30.0% |
! | GATTTAGGTTATATCTTGGT+TGG | - | chr7.4:10709595-10709614 | MS.gene061871:CDS | 30.0% |
! | GCATATGCAAATGTAGTTTT+TGG | + | chr7.4:10709767-10709786 | None:intergenic | 30.0% |
! | TAAGTTTATAGTGTGGGTTT+TGG | - | chr7.4:10709477-10709496 | MS.gene061871:CDS | 30.0% |
! | TATGTTGCTTACATACATGT+GGG | - | chr7.4:10709528-10709547 | MS.gene061871:CDS | 30.0% |
! | TCGTGATTTAGGTTATATCT+TGG | - | chr7.4:10709591-10709610 | MS.gene061871:CDS | 30.0% |
! | TTAGAATTAGAGGGTCTTTT+TGG | + | chr7.4:10707682-10707701 | None:intergenic | 30.0% |
! | TTGTCTTCTAAAGACAAAGA+GGG | - | chr7.4:10708136-10708155 | MS.gene061871:CDS | 30.0% |
! | TTTGTCTTCTAAAGACAAAG+AGG | - | chr7.4:10708135-10708154 | MS.gene061871:CDS | 30.0% |
!! | TAAGCTTCATGTGTTGATTT+AGG | - | chr7.4:10709803-10709822 | MS.gene061871:CDS | 30.0% |
AAGATCATGTTAACTCACCA+AGG | - | chr7.4:10708696-10708715 | MS.gene061871:CDS | 35.0% | |
AGTTGTAGAGGATGACTAAT+CGG | + | chr7.4:10708896-10708915 | None:intergenic | 35.0% | |
ATCCTTGTTGAATCAATGAG+AGG | - | chr7.4:10708097-10708116 | MS.gene061871:CDS | 35.0% | |
GAAAACACACAAGTGCAAAA+TGG | + | chr7.4:10708053-10708072 | None:intergenic | 35.0% | |
GAAATTACACATTCATCACC+AGG | - | chr7.4:10709028-10709047 | MS.gene061871:intron | 35.0% | |
GAAGAAGATACAACAAAAGG+TGG | - | chr7.4:10709295-10709314 | MS.gene061871:intron | 35.0% | |
GCTTCACAAAAACCATAATC+AGG | + | chr7.4:10709331-10709350 | None:intergenic | 35.0% | |
TGCACTTATCAACTCCTTAA+TGG | + | chr7.4:10707978-10707997 | None:intergenic | 35.0% | |
TGGGAAGAAGATACAACAAA+AGG | - | chr7.4:10709292-10709311 | MS.gene061871:intron | 35.0% | |
TGTTGTTCATTAGCTATGCT+TGG | + | chr7.4:10709112-10709131 | None:intergenic | 35.0% | |
TTCATGAAAGAGAGTCATGT+AGG | + | chr7.4:10709744-10709763 | None:intergenic | 35.0% | |
TTGGATTTAGCTATCAAACG+AGG | - | chr7.4:10708169-10708188 | MS.gene061871:CDS | 35.0% | |
! | AGCTCTTAAAGCTTCTGTTT+TGG | + | chr7.4:10708570-10708589 | None:intergenic | 35.0% |
! | GATTATGGTTTTTGTGAAGC+AGG | - | chr7.4:10709331-10709350 | MS.gene061871:CDS | 35.0% |
! | GTATGTTGCTTACATACATG+TGG | - | chr7.4:10709527-10709546 | MS.gene061871:CDS | 35.0% |
! | TTTTGTGGAGGATCATTGTT+TGG | + | chr7.4:10708791-10708810 | None:intergenic | 35.0% |
!! | GAAGGATTTGTTAGTTGTAG+AGG | + | chr7.4:10708908-10708927 | None:intergenic | 35.0% |
!! | TCTTAAAGCTTCTGTTTTGG+AGG | + | chr7.4:10708567-10708586 | None:intergenic | 35.0% |
!!! | TGTGATGGTTGTTGATTTTG+TGG | + | chr7.4:10708806-10708825 | None:intergenic | 35.0% |
AAAATCCTCTGCCACACTAT+GGG | - | chr7.4:10709838-10709857 | MS.gene061871:CDS | 40.0% | |
AACAGAAACTATTCGGGTGA+TGG | - | chr7.4:10708006-10708025 | MS.gene061871:intron | 40.0% | |
ACCCGAATAGTTTCTGTTTC+CGG | + | chr7.4:10708004-10708023 | None:intergenic | 40.0% | |
AGTCTATTGTGACAGACAGA+AGG | - | chr7.4:10708314-10708333 | MS.gene061871:CDS | 40.0% | |
ATCGATGATTGTTGTGGTTG+TGG | + | chr7.4:10708842-10708861 | None:intergenic | 40.0% | |
ATGAACACAATAGATGGGAC+AGG | - | chr7.4:10709131-10709150 | MS.gene061871:intron | 40.0% | |
CTGCAGTTGTAGGATATGTT+TGG | - | chr7.4:10709356-10709375 | MS.gene061871:CDS | 40.0% | |
CTTACATACATGTGGGCATT+GGG | - | chr7.4:10709535-10709554 | MS.gene061871:CDS | 40.0% | |
GTATGGCTAGCAAAATCTCT+TGG | + | chr7.4:10708614-10708633 | None:intergenic | 40.0% | |
GTCCTCTCATTACAGCAAAA+TGG | + | chr7.4:10707946-10707965 | None:intergenic | 40.0% | |
TCAGTCAGTAATTAGTCCAC+CGG | - | chr7.4:10709261-10709280 | MS.gene061871:intron | 40.0% | |
TCTTGTGTAGGATCATTGTG+TGG | + | chr7.4:10709010-10709029 | None:intergenic | 40.0% | |
TGAACACAATAGATGGGACA+GGG | - | chr7.4:10709132-10709151 | MS.gene061871:intron | 40.0% | |
TGCCGGAAACAGAAACTATT+CGG | - | chr7.4:10707999-10708018 | MS.gene061871:intron | 40.0% | |
TGTTGTTCTAGTAACTGTCG+AGG | + | chr7.4:10708728-10708747 | None:intergenic | 40.0% | |
TTAGATATTTGTGGAGGACG+AGG | + | chr7.4:10709701-10709720 | None:intergenic | 40.0% | |
TTCACATCAGCTGCTAAGTT+GGG | + | chr7.4:10707800-10707819 | None:intergenic | 40.0% | |
! | ATGGCTGAGATTGATGATCA+TGG | - | chr7.4:10708025-10708044 | MS.gene061871:intron | 40.0% |
! | CTAGAATTGTGTTCTGGGTT+AGG | - | chr7.4:10709662-10709681 | MS.gene061871:CDS | 40.0% |
! | GATTGGACTAGAGTTACTTG+AGG | + | chr7.4:10708872-10708891 | None:intergenic | 40.0% |
! | GGAGGATCAATGTTTTGTGA+TGG | + | chr7.4:10708821-10708840 | None:intergenic | 40.0% |
! | TGCATCACTATGTGTGCTTT+TGG | - | chr7.4:10709426-10709445 | MS.gene061871:CDS | 40.0% |
! | TGTAATGGGGTTTCAGAGAA+TGG | + | chr7.4:10707722-10707741 | None:intergenic | 40.0% |
! | TTCATCTAGCTTCGGCAAAA+GGG | - | chr7.4:10707840-10707859 | MS.gene061871:intron | 40.0% |
!! | CTCCATTTTGCTGTAATGAG+AGG | - | chr7.4:10707941-10707960 | MS.gene061871:intron | 40.0% |
!! | CTCCTCTCATTGATTCAACA+AGG | + | chr7.4:10708102-10708121 | None:intergenic | 40.0% |
!! | GTTTATAGTGTGGGTTTTGG+CGG | - | chr7.4:10709480-10709499 | MS.gene061871:CDS | 40.0% |
!! | TCATTAGCTATGCTTGGTGT+TGG | + | chr7.4:10709106-10709125 | None:intergenic | 40.0% |
!!! | GATGGTTGTTGATTTTGTGG+AGG | + | chr7.4:10708803-10708822 | None:intergenic | 40.0% |
AACTGTCGAGGATCATTCCT+TGG | + | chr7.4:10708716-10708735 | None:intergenic | 45.0% | |
CAGTCAGTAATTAGTCCACC+GGG | - | chr7.4:10709262-10709281 | MS.gene061871:intron | 45.0% | |
GAAAATCCTCTGCCACACTA+TGG | - | chr7.4:10709837-10709856 | MS.gene061871:CDS | 45.0% | |
GAGGATGACTAATCGGTGAT+TGG | + | chr7.4:10708889-10708908 | None:intergenic | 45.0% | |
GATGATTGTTGTGGTTGTGG+AGG | + | chr7.4:10708839-10708858 | None:intergenic | 45.0% | |
GATGGTGATTGTGGATGTTG+AGG | + | chr7.4:10708986-10709005 | None:intergenic | 45.0% | |
GCCGGAAACAGAAACTATTC+GGG | - | chr7.4:10708000-10708019 | MS.gene061871:intron | 45.0% | |
GCTTACATACATGTGGGCAT+TGG | - | chr7.4:10709534-10709553 | MS.gene061871:CDS | 45.0% | |
GGTGGTTGTGAAGGACTATT+GGG | + | chr7.4:10708935-10708954 | None:intergenic | 45.0% | |
GGTTACGCTTGTCCTGATTA+TGG | - | chr7.4:10709316-10709335 | MS.gene061871:CDS | 45.0% | |
GTAGGATCATTGTGTGGTGA+TGG | + | chr7.4:10709004-10709023 | None:intergenic | 45.0% | |
GTTAGTGAGGGATTGTGAGA+TGG | + | chr7.4:10708956-10708975 | None:intergenic | 45.0% | |
GTTCACATCAGCTGCTAAGT+TGG | + | chr7.4:10707801-10707820 | None:intergenic | 45.0% | |
TCGCGAATCAAGCAAGTTTC+TGG | + | chr7.4:10707902-10707921 | None:intergenic | 45.0% | |
TGGTGGTTGTGAAGGACTAT+TGG | + | chr7.4:10708936-10708955 | None:intergenic | 45.0% | |
TTGCCGAAGCTAGATGAAGA+GGG | + | chr7.4:10707838-10707857 | None:intergenic | 45.0% | |
TTGTGGATGTTGAGGCTCAT+TGG | + | chr7.4:10708978-10708997 | None:intergenic | 45.0% | |
TTTGCCGAAGCTAGATGAAG+AGG | + | chr7.4:10707839-10707858 | None:intergenic | 45.0% | |
! | CTTCATCTAGCTTCGGCAAA+AGG | - | chr7.4:10707839-10707858 | MS.gene061871:intron | 45.0% |
! | GTGGCAGAGGATTTTCAGAA+AGG | + | chr7.4:10709833-10709852 | None:intergenic | 45.0% |
! | TGAGGCTCATTGGTTAGTGA+GGG | + | chr7.4:10708968-10708987 | None:intergenic | 45.0% |
! | TTGAGGCTCATTGGTTAGTG+AGG | + | chr7.4:10708969-10708988 | None:intergenic | 45.0% |
! | TTGCCCTCTTCATCTAGCTT+CGG | - | chr7.4:10707832-10707851 | MS.gene061871:intron | 45.0% |
! | TTGTGAGATGGTGGTTGTGA+AGG | + | chr7.4:10708944-10708963 | None:intergenic | 45.0% |
! | TTGTGTTCTGGGTTAGGTCT+AGG | - | chr7.4:10709668-10709687 | MS.gene061871:CDS | 45.0% |
!! | CTATGCTTGGTGTTGGTGAA+GGG | + | chr7.4:10709099-10709118 | None:intergenic | 45.0% |
!! | GGAGTTGATAAGTGCAATGC+CGG | - | chr7.4:10707982-10708001 | MS.gene061871:intron | 45.0% |
!! | TTGTGTGGTGATGGTGATTG+TGG | + | chr7.4:10708995-10709014 | None:intergenic | 45.0% |
!!! | GTGCTTTTGGTTCTCGTAAG+TGG | - | chr7.4:10709439-10709458 | MS.gene061871:CDS | 45.0% |
AGGACGCGTAGGAACCATTA+AGG | - | chr7.4:10707961-10707980 | MS.gene061871:intron | 50.0% | |
AGTGAGGGATTGTGAGATGG+TGG | + | chr7.4:10708953-10708972 | None:intergenic | 50.0% | |
GAAGCAGGAACTGCAGTTGT+AGG | - | chr7.4:10709346-10709365 | MS.gene061871:CDS | 50.0% | |
GAAGGACTATTGGGTGGTGA+AGG | + | chr7.4:10708926-10708945 | None:intergenic | 50.0% | |
GCAGCTGATGTGAACTCAGA+AGG | - | chr7.4:10707806-10707825 | MS.gene061871:CDS | 50.0% | |
GGTTGTGAAGGACTATTGGG+TGG | + | chr7.4:10708932-10708951 | None:intergenic | 50.0% | |
GTGGTGGTTGTAGAGGATTG+AGG | + | chr7.4:10709054-10709073 | None:intergenic | 50.0% | |
TCAGTAATTAGTCCACCGGG+CGG | - | chr7.4:10709265-10709284 | MS.gene061871:intron | 50.0% | |
TCCAAGTGCTTCCCATAGTG+TGG | + | chr7.4:10709852-10709871 | None:intergenic | 50.0% | |
! | TCACTTGGTGAGAATGGTGG+TGG | + | chr7.4:10709073-10709092 | None:intergenic | 50.0% |
! | TCGTCACTTGGTGAGAATGG+TGG | + | chr7.4:10709076-10709095 | None:intergenic | 50.0% |
!! | AATGGTGGTGGTGGTTGTAG+AGG | + | chr7.4:10709061-10709080 | None:intergenic | 50.0% |
!! | GCTATGCTTGGTGTTGGTGA+AGG | + | chr7.4:10709100-10709119 | None:intergenic | 50.0% |
GCTGTAATGAGAGGACGCGT+AGG | - | chr7.4:10707950-10707969 | MS.gene061871:intron | 55.0% | |
GGTTGTAGAGGATTGAGGCC+TGG | + | chr7.4:10709049-10709068 | None:intergenic | 55.0% | |
TCTTCTTCCCAAACACCGCC+CGG | + | chr7.4:10709283-10709302 | None:intergenic | 55.0% | |
TGCTTCCCATAGTGTGGCAG+AGG | + | chr7.4:10709846-10709865 | None:intergenic | 55.0% | |
! | GGGTCGTCACTTGGTGAGAA+TGG | + | chr7.4:10709079-10709098 | None:intergenic | 55.0% |
! | GTTGGTGAAGGGTCGTCACT+TGG | + | chr7.4:10709088-10709107 | None:intergenic | 55.0% |
!! | CTTGGTGAGAATGGTGGTGG+TGG | + | chr7.4:10709070-10709089 | None:intergenic | 55.0% |
!! | GCCACACTATGGGAAGCACT+TGG | - | chr7.4:10709848-10709867 | MS.gene061871:CDS | 55.0% |
TAGTCCACCGGGCGGTGTTT+GGG | - | chr7.4:10709273-10709292 | MS.gene061871:intron | 60.0% | |
TTAGTCCACCGGGCGGTGTT+TGG | - | chr7.4:10709272-10709291 | MS.gene061871:intron | 60.0% | |
! | TCTGGGTTAGGTCTAGGCGC+AGG | - | chr7.4:10709674-10709693 | MS.gene061871:CDS | 60.0% |
TCTTCCCAAACACCGCCCGG+TGG | + | chr7.4:10709280-10709299 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 10707620 | 10709890 | 10707620 | ID=MS.gene061871 |
chr7.4 | mRNA | 10707620 | 10709890 | 10707620 | ID=MS.gene061871.t1;Parent=MS.gene061871 |
chr7.4 | exon | 10709309 | 10709890 | 10709309 | ID=MS.gene061871.t1.exon1;Parent=MS.gene061871.t1 |
chr7.4 | CDS | 10709309 | 10709890 | 10709309 | ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1 |
chr7.4 | exon | 10708057 | 10708995 | 10708057 | ID=MS.gene061871.t1.exon2;Parent=MS.gene061871.t1 |
chr7.4 | CDS | 10708057 | 10708995 | 10708057 | ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1 |
chr7.4 | exon | 10707774 | 10707848 | 10707774 | ID=MS.gene061871.t1.exon3;Parent=MS.gene061871.t1 |
chr7.4 | CDS | 10707774 | 10707848 | 10707774 | ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1 |
chr7.4 | exon | 10707620 | 10707685 | 10707620 | ID=MS.gene061871.t1.exon4;Parent=MS.gene061871.t1 |
chr7.4 | CDS | 10707620 | 10707685 | 10707620 | ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1 |
Gene Sequence |
Protein sequence |