AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061871


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061871.t1 MTR_7g099570 94.499 509 27 1 1 508 6 514 0.0 897
MS.gene061871.t1 MTR_7g099580 68.205 195 61 1 1 194 9 203 5.92e-86 270
MS.gene061871.t1 MTR_7g099580 78.723 47 10 0 419 465 238 284 5.81e-17 82.8
MS.gene061871.t1 MTR_1g069110 37.901 343 158 5 1 339 15 306 2.04e-58 201
MS.gene061871.t1 MTR_1g069110 50.000 128 60 2 381 508 236 359 5.37e-34 134
MS.gene061871.t1 MTR_7g099550 57.143 105 40 1 63 167 136 235 2.95e-29 116
MS.gene061871.t1 MTR_2g101320 25.231 432 247 10 32 461 134 491 1.45e-23 105
MS.gene061871.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 1.92e-21 98.6
MS.gene061871.t1 MTR_2g101310 26.426 333 221 9 32 360 134 446 2.65e-21 97.8
MS.gene061871.t1 MTR_7g021090 28.251 223 146 3 4 217 9 226 8.09e-20 92.4
MS.gene061871.t1 MTR_1g059930 30.526 190 118 4 4 184 12 196 3.65e-19 90.5
MS.gene061871.t1 MTR_8g072510 29.834 181 113 3 16 187 22 197 5.81e-18 87.0
MS.gene061871.t1 MTR_8g073260 28.571 203 131 5 7 200 14 211 6.52e-18 87.0
MS.gene061871.t1 MTR_8g068990 28.378 222 134 3 7 220 15 219 8.95e-18 86.7
MS.gene061871.t1 MTR_3g016210 29.834 181 113 4 16 187 22 197 1.07e-17 86.3
MS.gene061871.t1 MTR_8g062410 30.102 196 123 3 4 190 10 200 3.00e-17 84.7
MS.gene061871.t1 MTR_8g069880 31.579 190 116 4 7 187 10 194 3.48e-17 84.7
MS.gene061871.t1 MTR_8g039620 27.536 207 136 3 4 201 14 215 2.82e-16 81.6
MS.gene061871.t1 MTR_1g115575 28.082 292 177 10 4 287 135 401 4.79e-16 81.6
MS.gene061871.t1 MTR_7g451420 30.000 190 119 3 7 187 12 196 5.18e-16 79.7
MS.gene061871.t1 MTR_7g100390 30.542 203 125 5 2 199 82 273 1.03e-15 80.5
MS.gene061871.t1 MTR_8g467780 30.159 189 118 3 7 186 14 197 1.42e-14 76.6
MS.gene061871.t1 MTR_2g096190 29.902 204 127 5 2 200 99 291 2.49e-14 76.3
MS.gene061871.t1 MTR_3g105650 28.022 182 117 3 16 188 17 193 5.82e-14 74.3
MS.gene061871.t1 MTR_4g062100 28.063 253 155 7 4 250 74 305 7.76e-14 74.7
MS.gene061871.t1 MTR_1g032100 27.700 213 142 5 39 250 94 295 1.25e-13 73.9
MS.gene061871.t1 MTR_8g066670 24.436 266 177 6 16 264 1087 1345 4.69e-13 72.8
MS.gene061871.t1 MTR_8g105260 27.230 213 143 5 39 250 101 302 6.05e-13 71.6
MS.gene061871.t1 MTR_7g100430 26.275 255 162 6 39 289 161 393 8.82e-12 68.2
MS.gene061871.t1 MTR_7g117620 37.391 115 66 2 2 112 114 226 2.07e-11 67.0
MS.gene061871.t1 MTR_7g117620 25.359 209 117 5 37 214 82 282 9.12e-11 64.7
MS.gene061871.t1 MTR_7g087540 51.471 68 29 4 414 480 25 89 2.44e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061871.t1 AT4G10720 29.961 257 162 8 4 250 5 253 9.84e-21 95.1
MS.gene061871.t1 AT5G54610 32.569 218 134 5 11 220 12 224 1.25e-20 95.1
MS.gene061871.t1 AT4G10720 29.961 257 162 8 4 250 5 253 2.18e-20 94.4
MS.gene061871.t1 AT5G54620 30.876 217 136 4 2 209 3 214 4.55e-20 93.2
MS.gene061871.t1 AT1G14480 29.612 206 131 5 4 200 5 205 1.52e-17 85.9
MS.gene061871.t1 AT5G51160 30.612 196 116 6 65 250 42 227 4.27e-17 84.3
MS.gene061871.t1 AT5G15500 25.993 277 184 6 2 262 4 275 7.85e-17 83.6
MS.gene061871.t1 AT2G31820 32.843 204 118 6 4 202 193 382 9.72e-17 84.0
MS.gene061871.t1 AT1G14500 28.079 203 132 3 7 200 8 205 1.72e-16 82.4
MS.gene061871.t1 AT1G14480 31.707 164 103 3 4 163 5 163 2.72e-16 81.6
MS.gene061871.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene061871.t1 AT1G07710 29.279 222 106 6 2 217 99 275 1.43e-13 73.9
MS.gene061871.t1 AT3G12360 27.891 294 175 10 4 287 133 399 2.75e-13 73.2
MS.gene061871.t1 AT3G12360 27.891 294 175 10 4 287 121 387 2.89e-13 72.8
MS.gene061871.t1 AT5G60070 29.048 210 100 6 2 206 106 271 4.84e-13 72.0
MS.gene061871.t1 AT3G13950 39.655 116 65 3 397 508 4 118 9.04e-13 68.2
MS.gene061871.t1 AT5G50140 23.894 339 213 12 35 353 26 339 1.05e-12 70.9
MS.gene061871.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061871.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061871.t1 AT5G02620 26.855 283 174 10 4 279 60 316 2.24e-12 70.1
MS.gene061871.t1 AT1G05640 29.317 249 144 8 39 282 191 412 4.17e-12 69.3
MS.gene061871.t1 AT3G09550 25.597 293 187 9 4 289 154 422 1.52e-11 67.4
MS.gene061871.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4
MS.gene061871.t1 AT3G09550 25.597 293 187 9 4 289 147 415 1.53e-11 67.4

Find 113 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAGGGTAACAATATTT+TGG 0.140494 7.4:-10709338 MS.gene061871:CDS
TCGCGAATCAAGCAAGTTTC+TGG 0.144507 7.4:+10709589 None:intergenic
TGCACTTATCAACTCCTTAA+TGG 0.167211 7.4:+10709513 None:intergenic
TCCAATAACCTTGGTTTATT+AGG 0.187112 7.4:+10708311 None:intergenic
ACCTAATAAACCAAGGTTAT+TGG 0.210805 7.4:-10708312 MS.gene061871:CDS
CTCTATGATGCATCATTAAA+AGG 0.232530 7.4:-10709859 MS.gene061871:CDS
ACCCGAATAGTTTCTGTTTC+CGG 0.272426 7.4:+10709487 None:intergenic
AACAACATGAACACAATAGA+TGG 0.289553 7.4:-10708363 MS.gene061871:CDS
AAAGACAAGAGAACAATTAA+TGG 0.291148 7.4:-10708281 MS.gene061871:CDS
TGCATCACTATGTGTGCTTT+TGG 0.293332 7.4:-10708062 MS.gene061871:CDS
GGTTACGCTTGTCCTGATTA+TGG 0.311723 7.4:-10708172 MS.gene061871:CDS
GTAAAGAAGCTATGTGTAAT+GGG 0.322353 7.4:+10709755 None:intergenic
GAAAATCCTCTGCCACACTA+TGG 0.322481 7.4:-10707651 MS.gene061871:CDS
TATCAAACGAGGACAAATTA+AGG 0.325515 7.4:-10709308 MS.gene061871:intron
AGCTCTTAAAGCTTCTGTTT+TGG 0.341636 7.4:+10708921 None:intergenic
TGCCGGAAACAGAAACTATT+CGG 0.348258 7.4:-10709489 MS.gene061871:CDS
CTAGAATTGTGTTCTGGGTT+AGG 0.351230 7.4:-10707826 MS.gene061871:CDS
GAAAACACACAAGTGCAAAA+TGG 0.355298 7.4:+10709438 None:intergenic
AAATAGCTAGAATTGTGTTC+TGG 0.368470 7.4:-10707832 MS.gene061871:intron
TTAGTCCACCGGGCGGTGTT+TGG 0.379011 7.4:-10708216 MS.gene061871:CDS
AAAATGAATTTAAGATAATC+TGG 0.381714 7.4:+10708106 None:intergenic
TAGTCCACCGGGCGGTGTTT+GGG 0.381761 7.4:-10708215 MS.gene061871:CDS
TTACACATAGCTTCTTTACT+TGG 0.383128 7.4:-10709751 MS.gene061871:CDS
TGGTGGTTGTGAAGGACTAT+TGG 0.387197 7.4:+10708555 None:intergenic
CTTCATCTAGCTTCGGCAAA+AGG 0.398211 7.4:-10709649 MS.gene061871:CDS
GTCCTCTCATTACAGCAAAA+TGG 0.410295 7.4:+10709545 None:intergenic
GAAACTCTACTTAGAATTAG+AGG 0.414613 7.4:+10709799 None:intergenic
GGTGGTTGTGAAGGACTATT+GGG 0.420600 7.4:+10708556 None:intergenic
AGGACGCGTAGGAACCATTA+AGG 0.421682 7.4:-10709527 MS.gene061871:CDS
AATAGCTAGAATTGTGTTCT+GGG 0.426330 7.4:-10707831 MS.gene061871:intron
TTCACATCAGCTGCTAAGTT+GGG 0.430939 7.4:+10709691 None:intergenic
AGTAAAGAAGCTATGTGTAA+TGG 0.433633 7.4:+10709754 None:intergenic
ATCGATGATTGTTGTGGTTG+TGG 0.434864 7.4:+10708649 None:intergenic
TTGTGTTCTGGGTTAGGTCT+AGG 0.438558 7.4:-10707820 MS.gene061871:CDS
TTTAAGAGCTTTATATATGT+TGG 0.440411 7.4:-10708908 MS.gene061871:CDS
CTGCAGTTGTAGGATATGTT+TGG 0.441485 7.4:-10708132 MS.gene061871:CDS
TGTAATGGGGTTTCAGAGAA+TGG 0.449861 7.4:+10709769 None:intergenic
GTTCACATCAGCTGCTAAGT+TGG 0.450012 7.4:+10709690 None:intergenic
ATCTAAGTTAAAAGTAGAAA+AGG 0.458916 7.4:-10707773 MS.gene061871:intron
TTGTGTGGTGATGGTGATTG+TGG 0.460725 7.4:+10708496 None:intergenic
AGTTGTAGAGGATGACTAAT+CGG 0.467947 7.4:+10708595 None:intergenic
TTGCCCTCTTCATCTAGCTT+CGG 0.469951 7.4:-10709656 MS.gene061871:CDS
TGTTGTTCATTAGCTATGCT+TGG 0.473040 7.4:+10708379 None:intergenic
GCCGGAAACAGAAACTATTC+GGG 0.478264 7.4:-10709488 MS.gene061871:CDS
GAAGCAGGAACTGCAGTTGT+AGG 0.479785 7.4:-10708142 MS.gene061871:CDS
TCATTAGCTATGCTTGGTGT+TGG 0.483018 7.4:+10708385 None:intergenic
TTGTGGATGTTGAGGCTCAT+TGG 0.485922 7.4:+10708513 None:intergenic
TTCATCTAGCTTCGGCAAAA+GGG 0.485961 7.4:-10709648 MS.gene061871:CDS
TCAGTCAGTAATTAGTCCAC+CGG 0.487845 7.4:-10708227 MS.gene061871:CDS
GTATGGCTAGCAAAATCTCT+TGG 0.489498 7.4:+10708877 None:intergenic
GAGGATGACTAATCGGTGAT+TGG 0.491854 7.4:+10708602 None:intergenic
TCAAAATGTGTTGAATTGTA+TGG 0.493536 7.4:+10708860 None:intergenic
GCTATGCTTGGTGTTGGTGA+AGG 0.497302 7.4:+10708391 None:intergenic
GGGTCGTCACTTGGTGAGAA+TGG 0.511325 7.4:+10708412 None:intergenic
AAAATCCTCTGCCACACTAT+GGG 0.517000 7.4:-10707650 MS.gene061871:CDS
GAAGGATTTGTTAGTTGTAG+AGG 0.529973 7.4:+10708583 None:intergenic
AACTGTCGAGGATCATTCCT+TGG 0.530579 7.4:+10708775 None:intergenic
GGAGTTGATAAGTGCAATGC+CGG 0.532038 7.4:-10709506 MS.gene061871:CDS
TGCTTCCCATAGTGTGGCAG+AGG 0.532654 7.4:+10707645 None:intergenic
GAACAACATTCACAAATCAA+TGG 0.538302 7.4:-10708748 MS.gene061871:CDS
TTGTGAGATGGTGGTTGTGA+AGG 0.538920 7.4:+10708547 None:intergenic
AGTGAGGGATTGTGAGATGG+TGG 0.541315 7.4:+10708538 None:intergenic
CTTGGTGAGAATGGTGGTGG+TGG 0.543098 7.4:+10708421 None:intergenic
TGGGAAGAAGATACAACAAA+AGG 0.543938 7.4:-10708196 MS.gene061871:CDS
CTCCTCTCATTGATTCAACA+AGG 0.545286 7.4:+10709389 None:intergenic
AACAGAAACTATTCGGGTGA+TGG 0.549369 7.4:-10709482 MS.gene061871:CDS
TCTTCTTCCCAAACACCGCC+CGG 0.555882 7.4:+10708208 None:intergenic
GCCACACTATGGGAAGCACT+TGG 0.556613 7.4:-10707640 MS.gene061871:CDS
AATGGTGGTGGTGGTTGTAG+AGG 0.556799 7.4:+10708430 None:intergenic
TTTGTCTTCTAAAGACAAAG+AGG 0.558670 7.4:-10709353 MS.gene061871:CDS
ATGAACACAATAGATGGGAC+AGG 0.562692 7.4:-10708357 MS.gene061871:CDS
GAAGGACTATTGGGTGGTGA+AGG 0.565122 7.4:+10708565 None:intergenic
TTGAGGCTCATTGGTTAGTG+AGG 0.568784 7.4:+10708522 None:intergenic
CTATGCTTGGTGTTGGTGAA+GGG 0.569653 7.4:+10708392 None:intergenic
TCCAAGTGCTTCCCATAGTG+TGG 0.571682 7.4:+10707639 None:intergenic
GTAGGATCATTGTGTGGTGA+TGG 0.571721 7.4:+10708487 None:intergenic
CAGTCAGTAATTAGTCCACC+GGG 0.572133 7.4:-10708226 MS.gene061871:CDS
TGAGGCTCATTGGTTAGTGA+GGG 0.573688 7.4:+10708523 None:intergenic
GGTTGTAGAGGATTGAGGCC+TGG 0.573875 7.4:+10708442 None:intergenic
TTGTCTTCTAAAGACAAAGA+GGG 0.575204 7.4:-10709352 MS.gene061871:CDS
TTAGATATTTGTGGAGGACG+AGG 0.576543 7.4:+10707790 None:intergenic
GCAGCTGATGTGAACTCAGA+AGG 0.582169 7.4:-10709682 MS.gene061871:CDS
GTTGGTGAAGGGTCGTCACT+TGG 0.585627 7.4:+10708403 None:intergenic
ATGGCTGAGATTGATGATCA+TGG 0.588724 7.4:-10709463 MS.gene061871:CDS
AAACTCTACTTAGAATTAGA+GGG 0.589124 7.4:+10709800 None:intergenic
GTGGTGGTTGTAGAGGATTG+AGG 0.597688 7.4:+10708437 None:intergenic
TCACTTGGTGAGAATGGTGG+TGG 0.599059 7.4:+10708418 None:intergenic
GATGGTGATTGTGGATGTTG+AGG 0.600949 7.4:+10708505 None:intergenic
TCATTTATCGATGATTGTTG+TGG 0.602451 7.4:+10708643 None:intergenic
TTTGCCGAAGCTAGATGAAG+AGG 0.604364 7.4:+10709652 None:intergenic
ATCCTTGTTGAATCAATGAG+AGG 0.608497 7.4:-10709391 MS.gene061871:CDS
ACAACATGAACACAATAGAT+GGG 0.609468 7.4:-10708362 MS.gene061871:CDS
TCTGGGTTAGGTCTAGGCGC+AGG 0.609783 7.4:-10707814 MS.gene061871:CDS
GAATGTGTAATTTCTTGTGT+AGG 0.616234 7.4:+10708469 None:intergenic
TTGCCGAAGCTAGATGAAGA+GGG 0.617908 7.4:+10709653 None:intergenic
GGTTGTGAAGGACTATTGGG+TGG 0.622829 7.4:+10708559 None:intergenic
GTTAGTGAGGGATTGTGAGA+TGG 0.623672 7.4:+10708535 None:intergenic
GAAGAAGATACAACAAAAGG+TGG 0.625546 7.4:-10708193 MS.gene061871:CDS
GCTGTAATGAGAGGACGCGT+AGG 0.625908 7.4:-10709538 MS.gene061871:CDS
TCGTCACTTGGTGAGAATGG+TGG 0.634283 7.4:+10708415 None:intergenic
TTTAACTTAGATATTTGTGG+AGG 0.636829 7.4:+10707784 None:intergenic
GATTGGACTAGAGTTACTTG+AGG 0.640890 7.4:+10708619 None:intergenic
AACAAATACCTAATAAACCA+AGG 0.645161 7.4:-10708319 MS.gene061871:CDS
TAAAGAAGCTATGTGTAATG+GGG 0.652798 7.4:+10709756 None:intergenic
GAAATTACACATTCATCACC+AGG 0.657014 7.4:-10708460 MS.gene061871:CDS
AAGATCATGTTAACTCACCA+AGG 0.659607 7.4:-10708792 MS.gene061871:CDS
TGTTGTTCTAGTAACTGTCG+AGG 0.660930 7.4:+10708763 None:intergenic
GATGATTGTTGTGGTTGTGG+AGG 0.661128 7.4:+10708652 None:intergenic
TCTTCCCAAACACCGCCCGG+TGG 0.662288 7.4:+10708211 None:intergenic
TCTTGTGTAGGATCATTGTG+TGG 0.698697 7.4:+10708481 None:intergenic
TGAACACAATAGATGGGACA+GGG 0.709494 7.4:-10708356 MS.gene061871:CDS
TTGGATTTAGCTATCAAACG+AGG 0.710414 7.4:-10709319 MS.gene061871:CDS
TCAGTAATTAGTCCACCGGG+CGG 0.788117 7.4:-10708223 MS.gene061871:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAGAAAACTACA+AGG - chr7.4:10708402-10708421 MS.gene061871:CDS 15.0%
!!! AAAATGAATTTAAGATAATC+TGG + chr7.4:10709385-10709404 None:intergenic 15.0%
!! ACTATAAACTTATTATGAAG+AGG + chr7.4:10709469-10709488 None:intergenic 20.0%
!! ATCCAATTATTCATATGAAA+AGG + chr7.4:10708460-10708479 None:intergenic 20.0%
!! ATCTAAGTTAAAAGTAGAAA+AGG - chr7.4:10709715-10709734 MS.gene061871:CDS 20.0%
!! ATTCTATAGAAAATGTGATT+AGG + chr7.4:10709571-10709590 None:intergenic 20.0%
!! TCATAATAAGTTTATAGTGT+GGG - chr7.4:10709471-10709490 MS.gene061871:CDS 20.0%
!! TTCATAATAAGTTTATAGTG+TGG - chr7.4:10709470-10709489 MS.gene061871:CDS 20.0%
!!! AACCTTTTCATATGAATAAT+TGG - chr7.4:10708455-10708474 MS.gene061871:CDS 20.0%
!!! ACTTTTAACTTAGATATTTG+TGG + chr7.4:10709710-10709729 None:intergenic 20.0%
!!! TTTAAGAGCTTTATATATGT+TGG - chr7.4:10708580-10708599 MS.gene061871:CDS 20.0%
!!! TTTCAACAACAGATAAATTT+TGG - chr7.4:10708211-10708230 MS.gene061871:CDS 20.0%
! AAACTCTACTTAGAATTAGA+GGG + chr7.4:10707691-10707710 None:intergenic 25.0%
! AAAGACAAGAGAACAATTAA+TGG - chr7.4:10709207-10709226 MS.gene061871:intron 25.0%
! AACAAATACCTAATAAACCA+AGG - chr7.4:10709169-10709188 MS.gene061871:intron 25.0%
! ATTCATATGAAAAGGTTTCA+AGG + chr7.4:10708452-10708471 None:intergenic 25.0%
! TCAAAATGTGTTGAATTGTA+TGG + chr7.4:10708631-10708650 None:intergenic 25.0%
! TTCATATGAAAAGGTTTCAA+GGG + chr7.4:10708451-10708470 None:intergenic 25.0%
! TTCTATAGAATTCGTGATTT+AGG - chr7.4:10709580-10709599 MS.gene061871:CDS 25.0%
!! TGTTTTCTATAATCATCTAG+AGG - chr7.4:10708066-10708085 MS.gene061871:CDS 25.0%
!! TTTAACTTAGATATTTGTGG+AGG + chr7.4:10709707-10709726 None:intergenic 25.0%
!! TTTTATCTATCCAATAACCT+TGG + chr7.4:10709189-10709208 None:intergenic 25.0%
AAATAGCTAGAATTGTGTTC+TGG - chr7.4:10709656-10709675 MS.gene061871:CDS 30.0%
AACAACATGAACACAATAGA+TGG - chr7.4:10709125-10709144 MS.gene061871:intron 30.0%
AAGCTTAAATTGATAGGAGT+TGG + chr7.4:10709790-10709809 None:intergenic 30.0%
AATAGCTAGAATTGTGTTCT+GGG - chr7.4:10709657-10709676 MS.gene061871:CDS 30.0%
ACAACATGAACACAATAGAT+GGG - chr7.4:10709126-10709145 MS.gene061871:intron 30.0%
ACCTAATAAACCAAGGTTAT+TGG - chr7.4:10709176-10709195 MS.gene061871:intron 30.0%
AGCTTAAATTGATAGGAGTT+GGG + chr7.4:10709789-10709808 None:intergenic 30.0%
AGTAAAGAAGCTATGTGTAA+TGG + chr7.4:10707737-10707756 None:intergenic 30.0%
CACATGAAGCTTAAATTGAT+AGG + chr7.4:10709796-10709815 None:intergenic 30.0%
CTCTATGATGCATCATTAAA+AGG - chr7.4:10707629-10707648 MS.gene061871:CDS 30.0%
GAAACTCTACTTAGAATTAG+AGG + chr7.4:10707692-10707711 None:intergenic 30.0%
GAACAACATTCACAAATCAA+TGG - chr7.4:10708740-10708759 MS.gene061871:CDS 30.0%
GAATGTGTAATTTCTTGTGT+AGG + chr7.4:10709022-10709041 None:intergenic 30.0%
GTAAAGAAGCTATGTGTAAT+GGG + chr7.4:10707736-10707755 None:intergenic 30.0%
GTTATATCTTGGTTGGAATT+TGG - chr7.4:10709602-10709621 MS.gene061871:CDS 30.0%
TAAAGAAGCTATGTGTAATG+GGG + chr7.4:10707735-10707754 None:intergenic 30.0%
TATCAAACGAGGACAAATTA+AGG - chr7.4:10708180-10708199 MS.gene061871:CDS 30.0%
TCATTTATCGATGATTGTTG+TGG + chr7.4:10708848-10708867 None:intergenic 30.0%
TCCAATAACCTTGGTTTATT+AGG + chr7.4:10709180-10709199 None:intergenic 30.0%
TTACACATAGCTTCTTTACT+TGG - chr7.4:10707737-10707756 MS.gene061871:intron 30.0%
! CAAAGAGGGTAACAATATTT+TGG - chr7.4:10708150-10708169 MS.gene061871:CDS 30.0%
! CTTTTAATGATGCATCATAG+AGG + chr7.4:10707631-10707650 None:intergenic 30.0%
! GATTTAGGTTATATCTTGGT+TGG - chr7.4:10709595-10709614 MS.gene061871:CDS 30.0%
! GCATATGCAAATGTAGTTTT+TGG + chr7.4:10709767-10709786 None:intergenic 30.0%
! TAAGTTTATAGTGTGGGTTT+TGG - chr7.4:10709477-10709496 MS.gene061871:CDS 30.0%
! TATGTTGCTTACATACATGT+GGG - chr7.4:10709528-10709547 MS.gene061871:CDS 30.0%
! TCGTGATTTAGGTTATATCT+TGG - chr7.4:10709591-10709610 MS.gene061871:CDS 30.0%
! TTAGAATTAGAGGGTCTTTT+TGG + chr7.4:10707682-10707701 None:intergenic 30.0%
! TTGTCTTCTAAAGACAAAGA+GGG - chr7.4:10708136-10708155 MS.gene061871:CDS 30.0%
! TTTGTCTTCTAAAGACAAAG+AGG - chr7.4:10708135-10708154 MS.gene061871:CDS 30.0%
!! TAAGCTTCATGTGTTGATTT+AGG - chr7.4:10709803-10709822 MS.gene061871:CDS 30.0%
AAGATCATGTTAACTCACCA+AGG - chr7.4:10708696-10708715 MS.gene061871:CDS 35.0%
AGTTGTAGAGGATGACTAAT+CGG + chr7.4:10708896-10708915 None:intergenic 35.0%
ATCCTTGTTGAATCAATGAG+AGG - chr7.4:10708097-10708116 MS.gene061871:CDS 35.0%
GAAAACACACAAGTGCAAAA+TGG + chr7.4:10708053-10708072 None:intergenic 35.0%
GAAATTACACATTCATCACC+AGG - chr7.4:10709028-10709047 MS.gene061871:intron 35.0%
GAAGAAGATACAACAAAAGG+TGG - chr7.4:10709295-10709314 MS.gene061871:intron 35.0%
GCTTCACAAAAACCATAATC+AGG + chr7.4:10709331-10709350 None:intergenic 35.0%
TGCACTTATCAACTCCTTAA+TGG + chr7.4:10707978-10707997 None:intergenic 35.0%
TGGGAAGAAGATACAACAAA+AGG - chr7.4:10709292-10709311 MS.gene061871:intron 35.0%
TGTTGTTCATTAGCTATGCT+TGG + chr7.4:10709112-10709131 None:intergenic 35.0%
TTCATGAAAGAGAGTCATGT+AGG + chr7.4:10709744-10709763 None:intergenic 35.0%
TTGGATTTAGCTATCAAACG+AGG - chr7.4:10708169-10708188 MS.gene061871:CDS 35.0%
! AGCTCTTAAAGCTTCTGTTT+TGG + chr7.4:10708570-10708589 None:intergenic 35.0%
! GATTATGGTTTTTGTGAAGC+AGG - chr7.4:10709331-10709350 MS.gene061871:CDS 35.0%
! GTATGTTGCTTACATACATG+TGG - chr7.4:10709527-10709546 MS.gene061871:CDS 35.0%
! TTTTGTGGAGGATCATTGTT+TGG + chr7.4:10708791-10708810 None:intergenic 35.0%
!! GAAGGATTTGTTAGTTGTAG+AGG + chr7.4:10708908-10708927 None:intergenic 35.0%
!! TCTTAAAGCTTCTGTTTTGG+AGG + chr7.4:10708567-10708586 None:intergenic 35.0%
!!! TGTGATGGTTGTTGATTTTG+TGG + chr7.4:10708806-10708825 None:intergenic 35.0%
AAAATCCTCTGCCACACTAT+GGG - chr7.4:10709838-10709857 MS.gene061871:CDS 40.0%
AACAGAAACTATTCGGGTGA+TGG - chr7.4:10708006-10708025 MS.gene061871:intron 40.0%
ACCCGAATAGTTTCTGTTTC+CGG + chr7.4:10708004-10708023 None:intergenic 40.0%
AGTCTATTGTGACAGACAGA+AGG - chr7.4:10708314-10708333 MS.gene061871:CDS 40.0%
ATCGATGATTGTTGTGGTTG+TGG + chr7.4:10708842-10708861 None:intergenic 40.0%
ATGAACACAATAGATGGGAC+AGG - chr7.4:10709131-10709150 MS.gene061871:intron 40.0%
CTGCAGTTGTAGGATATGTT+TGG - chr7.4:10709356-10709375 MS.gene061871:CDS 40.0%
CTTACATACATGTGGGCATT+GGG - chr7.4:10709535-10709554 MS.gene061871:CDS 40.0%
GTATGGCTAGCAAAATCTCT+TGG + chr7.4:10708614-10708633 None:intergenic 40.0%
GTCCTCTCATTACAGCAAAA+TGG + chr7.4:10707946-10707965 None:intergenic 40.0%
TCAGTCAGTAATTAGTCCAC+CGG - chr7.4:10709261-10709280 MS.gene061871:intron 40.0%
TCTTGTGTAGGATCATTGTG+TGG + chr7.4:10709010-10709029 None:intergenic 40.0%
TGAACACAATAGATGGGACA+GGG - chr7.4:10709132-10709151 MS.gene061871:intron 40.0%
TGCCGGAAACAGAAACTATT+CGG - chr7.4:10707999-10708018 MS.gene061871:intron 40.0%
TGTTGTTCTAGTAACTGTCG+AGG + chr7.4:10708728-10708747 None:intergenic 40.0%
TTAGATATTTGTGGAGGACG+AGG + chr7.4:10709701-10709720 None:intergenic 40.0%
TTCACATCAGCTGCTAAGTT+GGG + chr7.4:10707800-10707819 None:intergenic 40.0%
! ATGGCTGAGATTGATGATCA+TGG - chr7.4:10708025-10708044 MS.gene061871:intron 40.0%
! CTAGAATTGTGTTCTGGGTT+AGG - chr7.4:10709662-10709681 MS.gene061871:CDS 40.0%
! GATTGGACTAGAGTTACTTG+AGG + chr7.4:10708872-10708891 None:intergenic 40.0%
! GGAGGATCAATGTTTTGTGA+TGG + chr7.4:10708821-10708840 None:intergenic 40.0%
! TGCATCACTATGTGTGCTTT+TGG - chr7.4:10709426-10709445 MS.gene061871:CDS 40.0%
! TGTAATGGGGTTTCAGAGAA+TGG + chr7.4:10707722-10707741 None:intergenic 40.0%
! TTCATCTAGCTTCGGCAAAA+GGG - chr7.4:10707840-10707859 MS.gene061871:intron 40.0%
!! CTCCATTTTGCTGTAATGAG+AGG - chr7.4:10707941-10707960 MS.gene061871:intron 40.0%
!! CTCCTCTCATTGATTCAACA+AGG + chr7.4:10708102-10708121 None:intergenic 40.0%
!! GTTTATAGTGTGGGTTTTGG+CGG - chr7.4:10709480-10709499 MS.gene061871:CDS 40.0%
!! TCATTAGCTATGCTTGGTGT+TGG + chr7.4:10709106-10709125 None:intergenic 40.0%
!!! GATGGTTGTTGATTTTGTGG+AGG + chr7.4:10708803-10708822 None:intergenic 40.0%
AACTGTCGAGGATCATTCCT+TGG + chr7.4:10708716-10708735 None:intergenic 45.0%
CAGTCAGTAATTAGTCCACC+GGG - chr7.4:10709262-10709281 MS.gene061871:intron 45.0%
GAAAATCCTCTGCCACACTA+TGG - chr7.4:10709837-10709856 MS.gene061871:CDS 45.0%
GAGGATGACTAATCGGTGAT+TGG + chr7.4:10708889-10708908 None:intergenic 45.0%
GATGATTGTTGTGGTTGTGG+AGG + chr7.4:10708839-10708858 None:intergenic 45.0%
GATGGTGATTGTGGATGTTG+AGG + chr7.4:10708986-10709005 None:intergenic 45.0%
GCCGGAAACAGAAACTATTC+GGG - chr7.4:10708000-10708019 MS.gene061871:intron 45.0%
GCTTACATACATGTGGGCAT+TGG - chr7.4:10709534-10709553 MS.gene061871:CDS 45.0%
GGTGGTTGTGAAGGACTATT+GGG + chr7.4:10708935-10708954 None:intergenic 45.0%
GGTTACGCTTGTCCTGATTA+TGG - chr7.4:10709316-10709335 MS.gene061871:CDS 45.0%
GTAGGATCATTGTGTGGTGA+TGG + chr7.4:10709004-10709023 None:intergenic 45.0%
GTTAGTGAGGGATTGTGAGA+TGG + chr7.4:10708956-10708975 None:intergenic 45.0%
GTTCACATCAGCTGCTAAGT+TGG + chr7.4:10707801-10707820 None:intergenic 45.0%
TCGCGAATCAAGCAAGTTTC+TGG + chr7.4:10707902-10707921 None:intergenic 45.0%
TGGTGGTTGTGAAGGACTAT+TGG + chr7.4:10708936-10708955 None:intergenic 45.0%
TTGCCGAAGCTAGATGAAGA+GGG + chr7.4:10707838-10707857 None:intergenic 45.0%
TTGTGGATGTTGAGGCTCAT+TGG + chr7.4:10708978-10708997 None:intergenic 45.0%
TTTGCCGAAGCTAGATGAAG+AGG + chr7.4:10707839-10707858 None:intergenic 45.0%
! CTTCATCTAGCTTCGGCAAA+AGG - chr7.4:10707839-10707858 MS.gene061871:intron 45.0%
! GTGGCAGAGGATTTTCAGAA+AGG + chr7.4:10709833-10709852 None:intergenic 45.0%
! TGAGGCTCATTGGTTAGTGA+GGG + chr7.4:10708968-10708987 None:intergenic 45.0%
! TTGAGGCTCATTGGTTAGTG+AGG + chr7.4:10708969-10708988 None:intergenic 45.0%
! TTGCCCTCTTCATCTAGCTT+CGG - chr7.4:10707832-10707851 MS.gene061871:intron 45.0%
! TTGTGAGATGGTGGTTGTGA+AGG + chr7.4:10708944-10708963 None:intergenic 45.0%
! TTGTGTTCTGGGTTAGGTCT+AGG - chr7.4:10709668-10709687 MS.gene061871:CDS 45.0%
!! CTATGCTTGGTGTTGGTGAA+GGG + chr7.4:10709099-10709118 None:intergenic 45.0%
!! GGAGTTGATAAGTGCAATGC+CGG - chr7.4:10707982-10708001 MS.gene061871:intron 45.0%
!! TTGTGTGGTGATGGTGATTG+TGG + chr7.4:10708995-10709014 None:intergenic 45.0%
!!! GTGCTTTTGGTTCTCGTAAG+TGG - chr7.4:10709439-10709458 MS.gene061871:CDS 45.0%
AGGACGCGTAGGAACCATTA+AGG - chr7.4:10707961-10707980 MS.gene061871:intron 50.0%
AGTGAGGGATTGTGAGATGG+TGG + chr7.4:10708953-10708972 None:intergenic 50.0%
GAAGCAGGAACTGCAGTTGT+AGG - chr7.4:10709346-10709365 MS.gene061871:CDS 50.0%
GAAGGACTATTGGGTGGTGA+AGG + chr7.4:10708926-10708945 None:intergenic 50.0%
GCAGCTGATGTGAACTCAGA+AGG - chr7.4:10707806-10707825 MS.gene061871:CDS 50.0%
GGTTGTGAAGGACTATTGGG+TGG + chr7.4:10708932-10708951 None:intergenic 50.0%
GTGGTGGTTGTAGAGGATTG+AGG + chr7.4:10709054-10709073 None:intergenic 50.0%
TCAGTAATTAGTCCACCGGG+CGG - chr7.4:10709265-10709284 MS.gene061871:intron 50.0%
TCCAAGTGCTTCCCATAGTG+TGG + chr7.4:10709852-10709871 None:intergenic 50.0%
! TCACTTGGTGAGAATGGTGG+TGG + chr7.4:10709073-10709092 None:intergenic 50.0%
! TCGTCACTTGGTGAGAATGG+TGG + chr7.4:10709076-10709095 None:intergenic 50.0%
!! AATGGTGGTGGTGGTTGTAG+AGG + chr7.4:10709061-10709080 None:intergenic 50.0%
!! GCTATGCTTGGTGTTGGTGA+AGG + chr7.4:10709100-10709119 None:intergenic 50.0%
GCTGTAATGAGAGGACGCGT+AGG - chr7.4:10707950-10707969 MS.gene061871:intron 55.0%
GGTTGTAGAGGATTGAGGCC+TGG + chr7.4:10709049-10709068 None:intergenic 55.0%
TCTTCTTCCCAAACACCGCC+CGG + chr7.4:10709283-10709302 None:intergenic 55.0%
TGCTTCCCATAGTGTGGCAG+AGG + chr7.4:10709846-10709865 None:intergenic 55.0%
! GGGTCGTCACTTGGTGAGAA+TGG + chr7.4:10709079-10709098 None:intergenic 55.0%
! GTTGGTGAAGGGTCGTCACT+TGG + chr7.4:10709088-10709107 None:intergenic 55.0%
!! CTTGGTGAGAATGGTGGTGG+TGG + chr7.4:10709070-10709089 None:intergenic 55.0%
!! GCCACACTATGGGAAGCACT+TGG - chr7.4:10709848-10709867 MS.gene061871:CDS 55.0%
TAGTCCACCGGGCGGTGTTT+GGG - chr7.4:10709273-10709292 MS.gene061871:intron 60.0%
TTAGTCCACCGGGCGGTGTT+TGG - chr7.4:10709272-10709291 MS.gene061871:intron 60.0%
! TCTGGGTTAGGTCTAGGCGC+AGG - chr7.4:10709674-10709693 MS.gene061871:CDS 60.0%
TCTTCCCAAACACCGCCCGG+TGG + chr7.4:10709280-10709299 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 10707620 10709890 10707620 ID=MS.gene061871
chr7.4 mRNA 10707620 10709890 10707620 ID=MS.gene061871.t1;Parent=MS.gene061871
chr7.4 exon 10709309 10709890 10709309 ID=MS.gene061871.t1.exon1;Parent=MS.gene061871.t1
chr7.4 CDS 10709309 10709890 10709309 ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1
chr7.4 exon 10708057 10708995 10708057 ID=MS.gene061871.t1.exon2;Parent=MS.gene061871.t1
chr7.4 CDS 10708057 10708995 10708057 ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1
chr7.4 exon 10707774 10707848 10707774 ID=MS.gene061871.t1.exon3;Parent=MS.gene061871.t1
chr7.4 CDS 10707774 10707848 10707774 ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1
chr7.4 exon 10707620 10707685 10707620 ID=MS.gene061871.t1.exon4;Parent=MS.gene061871.t1
chr7.4 CDS 10707620 10707685 10707620 ID=cds.MS.gene061871.t1;Parent=MS.gene061871.t1
Gene Sequence

>MS.gene061871

ATGAGAAACCTCTATGATGCATCATTAAAAGGATGTGTGATTAGCTTAAAAGCACTTATCCAAAAAGACCCTCTAATTCTAAGTAGAGTTTCACTCTCTCCATTCTCTGAAACCCCATTACACATAGCTTCTTTACTTGGACATTTAGAATTAAGTCAAATTCTTCTTGACATAAATCCCAACTTAGCAGCTGATGTGAACTCAGAAGGACATTGCCCTCTTCATCTAGCTTCGGCAAAAGGGCACATTGAAATAGTGAAAGCTTTGTTGTTGACAGATCCAGAAACTTGCTTGATTCGCGACAAAGATGACAAACTTTCTCTCCATTTTGCTGTAATGAGAGGACGCGTAGGAACCATTAAGGAGTTGATAAGTGCAATGCCGGAAACAGAAACTATTCGGGTGATGGCTGAGATTGATGATCATGGTTCCATTTTGCACTTGTGTGTTTTCTATAATCATCTAGAGGCATTGAAAATCCTTGTTGAATCAATGAGAGGAGACATTGATCAATTTTTGTCTTCTAAAGACAAAGAGGGTAACAATATTTTGGATTTAGCTATCAAACGAGGACAAATTAAGGTAATGTTTTTTCAACAACAGATAAATTTTGGATTTGCTCACTTTCTAAAAATATTTTCAATTTACAATTTAAAAATCTGAATTCATTTTAAACTGCTAACAATAAGATGAAAGTCTATTGTGACAGACAGAAGGTGAAAGACTTTTTAAGTAGAATACATTTTTAAAAATAATGAAAACAATGTTTTCACATTTTCAAAAATTATAAAAGAAAACTACAAGGAAAATACTGAATCTTGTTTTGAGCCCTTGAAACCTTTTCATATGAATAATTGGATTAAACATTAGTAACAACTTTTATATAACTTTGCAGATCATAAAGTACTTGCTCTCACTATCTGAAATGAGTGAGACAATAAATACCTCCAAAACAGAAGCTTTAAGAGCTTTATATATGTTGGAGCATAGTCCAAGAGATTTTGCTAGCCATACAATTCAACACATTTTGACTGAAGAAAGAGCTCAAACATCTACAAATATAGTTATTGCTCAACAAGATCATGTTAACTCACCAAGGAATGATCCTCGACAGTTACTAGAACAACATTCACAAATCAATGGTCATGAACAATCACAAACTTCATCACCAAACAATGATCCTCCACAAAATCAACAACCATCACAAAACATTGATCCTCCACAACCACAACAATCATCGATAAATGATCCTCAAGTAACTCTAGTCCAATCACCGATTAGTCATCCTCTACAACTAACAAATCCTTCACCACCCAATAGTCCTTCACAACCACCATCTCACAATCCCTCACTAACCAATGAGCCTCAACATCCACAATCACCATCACCACACAATGATCCTACACAAGAAATTACACATTCATCACCAGGCCTCAATCCTCTACAACCACCACCACCATTCTCACCAAGTGACGACCCTTCACCAACACCAAGCATAGCTAATGAACAACATGAACACAATAGATGGGACAGGGTTGAGAGTTTCTGCAACAAATACCTAATAAACCAAGGTTATTGGATAGATAAAAAGACAAGAGAACAATTAATGGTAGCAGCAACTGTGATTGCAACTATGACTTTTCAGTCAGTAATTAGTCCACCGGGCGGTGTTTGGGAAGAAGATACAACAAAAGGTGGTTACGCTTGTCCTGATTATGGTTTTTGTGAAGCAGGAACTGCAGTTGTAGGATATGTTTGGTCACCAGATTATCTTAAATTCATTTTCTTCAACTCTGCTTCTTTCTTTGCATCACTATGTGTGCTTTTGGTTCTCGTAAGTGGATTTCCTCTTCATAATAAGTTTATAGTGTGGGTTTTGGCGGTTTTGATGATAGTTGCAATCACATGTATGTTGCTTACATACATGTGGGCATTGGGATTAATTAGTCCTAATCACATTTTCTATAGAATTCGTGATTTAGGTTATATCTTGGTTGGAATTTGGTCTTTCTTACTTTTTGTTGTTTGTTTGATTCAAATAGCTAGAATTGTGTTCTGGGTTAGGTCTAGGCGCAGGTCCTCGTCCTCCACAAATATCTAAGTTAAAAGTAGAAAAGGTTGCCTACATGACTCTCTTTCATGAACCAAAAACTACATTTGCATATGCCCAACTCCTATCAATTTAAGCTTCATGTGTTGATTTAGGATATCCTTTCTGAAAATCCTCTGCCACACTATGGGAAGCACTTGGAGAAGTGCGATGATTCATAA

Protein sequence

>MS.gene061871.t1

MRNLYDASLKGCVISLKALIQKDPLILSRVSLSPFSETPLHIASLLGHLELSQILLDINPNLAADVNSEGHCPLHLASAKGHIEIVKALLLTDPETCLIRDKDDKLSLHFAVMRGRVGTIKELISAMPETETIRVMAEIDDHGSILHLCVFYNHLEALKILVESMRGDIDQFLSSKDKEGNNILDLAIKRGQIKIIKYLLSLSEMSETINTSKTEALRALYMLEHSPRDFASHTIQHILTEERAQTSTNIVIAQQDHVNSPRNDPRQLLEQHSQINGHEQSQTSSPNNDPPQNQQPSQNIDPPQPQQSSINDPQVTLVQSPISHPLQLTNPSPPNSPSQPPSHNPSLTNEPQHPQSPSPHNDPTQEITHSSPGLNPLQPPPPFSPSDDPSPTPSIANEQHEHNRWDRVESFCNKYLINQGYWIDKKTREQLMVAATVIATMTFQSVISPPGGVWEEDTTKGGYACPDYGFCEAGTAVVGYVWSPDYLKFIFFNSASFFASLCVLLVLLELCSGLGLGAGPRPPQISKLKVEKDILSENPLPHYGKHLEKCDDS