AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062045

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062045.t1 MTR_2g046030 93.606 391 22 1 1 391 1 388 0.0 749
MS.gene062045.t1 MTR_2g045980 92.839 391 25 1 1 391 1 388 0.0 738
MS.gene062045.t1 MTR_3g018740 67.857 392 121 2 1 391 1 388 0.0 514
MS.gene062045.t1 MTR_3g101010 67.008 391 123 2 1 389 1 387 2.27e-177 499
MS.gene062045.t1 MTR_8g027395 64.341 387 132 3 3 389 15 395 8.70e-175 493
MS.gene062045.t1 MTR_4g045707 63.824 387 134 3 4 389 5 386 1.25e-170 482
MS.gene062045.t1 MTR_8g027420 61.499 387 132 3 3 389 4 373 5.90e-162 459
MS.gene062045.t1 MTR_3g048000 60.982 387 128 4 6 391 28 392 1.05e-161 459
MS.gene062045.t1 MTR_8g461160 60.305 393 146 3 5 391 6 394 9.72e-158 449
MS.gene062045.t1 MTR_3g101030 58.750 400 139 6 10 389 34 427 1.15e-155 446
MS.gene062045.t1 MTR_4g088535 60.825 388 128 5 1 386 1 366 1.22e-155 444
MS.gene062045.t1 MTR_4g088525 60.383 366 139 2 24 389 8 367 1.63e-151 432
MS.gene062045.t1 MTR_3g101130 58.163 392 149 5 4 389 5 387 1.32e-150 431
MS.gene062045.t1 MTR_3g101180 57.214 402 155 6 1 389 1 398 1.56e-148 426
MS.gene062045.t1 MTR_7g050810 57.506 393 155 4 5 390 16 403 1.07e-147 424
MS.gene062045.t1 MTR_7g050750 56.709 395 159 4 3 390 6 395 6.86e-147 422
MS.gene062045.t1 MTR_7g451890 55.102 392 166 3 5 390 14 401 2.24e-144 416
MS.gene062045.t1 MTR_7g047780 56.234 393 160 4 5 390 14 401 1.48e-143 414
MS.gene062045.t1 MTR_3g101050 58.656 387 133 8 8 389 32 396 2.50e-140 405
MS.gene062045.t1 MTR_2g046410 75.836 269 53 3 135 391 81 349 3.67e-139 400
MS.gene062045.t1 MTR_3g015620 56.633 392 136 5 5 390 16 379 1.52e-135 392
MS.gene062045.t1 MTR_3g102920 56.250 384 122 8 12 389 65 408 3.34e-126 370
MS.gene062045.t1 MTR_3g101190 49.867 375 123 5 15 389 1 310 1.42e-115 339
MS.gene062045.t1 MTR_3g101200 49.235 392 164 7 3 389 29 390 1.11e-113 337
MS.gene062045.t1 MTR_3g018747 63.774 265 76 4 129 391 9 255 2.03e-108 319
MS.gene062045.t1 MTR_3g100995 60.232 259 96 3 133 390 11 263 4.22e-108 318
MS.gene062045.t1 MTR_3g100010 51.582 316 101 3 28 310 40 336 7.90e-100 300
MS.gene062045.t1 MTR_7g050830 48.903 319 126 4 5 301 16 319 9.06e-96 289
MS.gene062045.t1 MTR_3g111160 66.216 222 69 3 170 389 1 218 2.23e-90 271
MS.gene062045.t1 MTR_3g015760 58.647 266 100 4 128 390 22 280 2.41e-90 274
MS.gene062045.t1 MTR_3g100520 59.276 221 75 3 170 389 1 207 1.94e-84 256
MS.gene062045.t1 MTR_3g099970 60.500 200 58 3 129 328 20 198 6.76e-74 229
MS.gene062045.t1 MTR_3g114310 37.940 398 222 13 6 388 20 407 3.96e-72 231
MS.gene062045.t1 MTR_3g101110 51.852 243 81 5 129 365 68 280 1.03e-69 221
MS.gene062045.t1 MTR_3g111150 56.497 177 53 2 7 183 1 153 3.58e-60 192
MS.gene062045.t1 MTR_3g102870 62.179 156 55 1 192 347 1 152 3.18e-59 190
MS.gene062045.t1 MTR_3g101020 51.852 189 60 3 203 390 1 159 9.05e-57 183
MS.gene062045.t1 MTR_3g101150 58.385 161 57 3 235 389 1 157 5.45e-54 176
MS.gene062045.t1 MTR_3g100990 62.406 133 50 0 1 133 1 133 4.03e-46 165
MS.gene062045.t1 MTR_4g093550 57.471 87 37 0 2 88 3 89 3.52e-26 101
MS.gene062045.t1 MTR_6g046890 67.742 62 20 0 23 84 17 78 1.03e-18 82.4
MS.gene062045.t1 MTR_3g101140 55.224 67 27 1 326 389 48 114 2.12e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062045.t1 AT1G47710 50.508 394 186 5 1 389 1 390 3.56e-135 392
MS.gene062045.t1 AT1G47710 50.508 394 186 5 1 389 28 417 1.77e-134 391
MS.gene062045.t1 AT3G45220 45.226 398 200 6 1 388 1 390 6.10e-114 338
MS.gene062045.t1 AT2G25240 45.750 400 187 10 1 388 1 382 1.16e-109 327
MS.gene062045.t1 AT2G26390 44.888 401 193 9 1 388 1 386 4.23e-109 325
MS.gene062045.t1 AT1G62170 40.108 369 188 5 27 388 89 431 6.36e-90 278
MS.gene062045.t1 AT2G14540 40.759 395 197 8 3 388 31 397 3.29e-87 270
MS.gene062045.t1 AT2G35580 38.636 396 210 9 1 388 1 371 1.70e-84 262
MS.gene062045.t1 AT1G64030 39.950 398 202 10 1 388 1 371 2.36e-84 262
MS.gene062045.t1 AT1G62170 36.816 402 188 6 27 388 89 464 5.37e-83 261
MS.gene062045.t1 AT1G64010 44.545 220 96 4 170 388 1 195 6.50e-59 190
MS.gene062045.t1 AT1G64010 43.415 205 90 4 185 388 2 181 1.00e-51 171
MS.gene062045.t1 AT1G63280 48.305 118 57 2 126 241 5 120 2.96e-29 110
MS.gene062045.t1 AT1G62160 40.437 183 80 4 209 388 62 218 4.11e-29 113
MS.gene062045.t1 AT1G51330 50.467 107 50 3 132 235 34 140 1.80e-21 91.7

Find 75 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATGCATTGTACTTTAT+AGG 0.265047 2.3:+44653430 MS.gene062045:CDS
CTCAGTCAAGGTTCCTTTCA+TGG 0.298539 2.3:+44653519 MS.gene062045:CDS
GAGGAAGAAGTTCTTTAATA+AGG 0.302330 2.3:-44653372 None:intergenic
CGATAAGGCTGAGCACAATT+TGG 0.307568 2.3:-44652428 None:intergenic
ACGGGAACAATCCTCTTTAT+CGG 0.322808 2.3:+44654057 MS.gene062045:CDS
AGCACAATTTGGAGTGATAT+TGG 0.334216 2.3:-44652417 None:intergenic
TTTGGTTAGTGATTGATTCT+TGG 0.347320 2.3:-44652326 None:intergenic
GGCGAAGGAGTTGAGATGAT+TGG 0.358690 2.3:-44652511 None:intergenic
GAAATATGTGAGAAACAAAA+AGG 0.360406 2.3:-44653891 None:intergenic
CCAAGATTCAGTGTTTCATT+CGG 0.367261 2.3:+44653772 MS.gene062045:CDS
CAAGATTCAGTGTTTCATTC+GGG 0.369474 2.3:+44653773 MS.gene062045:CDS
AAAATGGTGGATTCTCTTGC+GGG 0.387201 2.3:+44653862 MS.gene062045:CDS
ATCACGTACTATTTGTTTGA+AGG 0.408161 2.3:-44652640 None:intergenic
TGAAGGAAGGTTGAAGAGAA+AGG 0.413542 2.3:-44652623 None:intergenic
AACAACTTGTCGACTTCCTC+CGG 0.432314 2.3:+44652478 MS.gene062045:CDS
AACCACTCCTAACTCCTTCA+AGG 0.438432 2.3:-44653812 None:intergenic
TGTCGAGGGAAACCTTTGTT+TGG 0.459015 2.3:-44652344 None:intergenic
GAAGGAAGGTTGAAGAGAAA+GGG 0.460189 2.3:-44652622 None:intergenic
GTGCTCAGCCTTATCGCTGC+TGG 0.467549 2.3:+44652435 MS.gene062045:CDS
AGTGATACCTTGAAGGAGTT+AGG 0.474105 2.3:+44653805 MS.gene062045:CDS
GATGATTGGAGGATTTGAAC+CGG 0.477099 2.3:-44652497 None:intergenic
TGAGCACTTGTCCGATAAAG+AGG 0.478855 2.3:-44654068 None:intergenic
TTGTTTCAACAAGAGATGTC+TGG 0.480983 2.3:-44652370 None:intergenic
TTCTCTAATTAGAAACAAGA+AGG 0.481714 2.3:-44654028 None:intergenic
ATCTTCTTGCTTACCATGAA+AGG 0.484270 2.3:-44653532 None:intergenic
ATGCTTGCTGATCTATCAAC+TGG 0.484743 2.3:-44653400 None:intergenic
CCGAATGAAACACTGAATCT+TGG 0.486665 2.3:-44653772 None:intergenic
CTTCAGAACCAGCAGCGATA+AGG 0.486899 2.3:-44652443 None:intergenic
TAACTCCTTCAAGGTATCAC+TGG 0.494067 2.3:-44653803 None:intergenic
CGTACTATTTGTTTGAAGGA+AGG 0.504228 2.3:-44652636 None:intergenic
AAGGACGTTGCTCATGGTGG+TGG 0.504851 2.3:+44652558 MS.gene062045:CDS
TGGTTAACTTCAAAGTTTAG+TGG 0.507541 2.3:-44654003 None:intergenic
AGCAGTAGCTGCAGCAACTT+CGG 0.517350 2.3:-44653947 None:intergenic
TCTAATTAGAGAAGATTTGA+CGG 0.520817 2.3:+44654038 MS.gene062045:CDS
TGAAACCAGTGATACCTTGA+AGG 0.522388 2.3:+44653798 MS.gene062045:CDS
CTAATTAGAGAAGATTTGAC+GGG 0.523712 2.3:+44654039 MS.gene062045:CDS
CTTATCGCTGCTGGTTCTGA+AGG 0.525511 2.3:+44652444 MS.gene062045:CDS
GAAGGAGTTGAGATGATTGG+AGG 0.529448 2.3:-44652508 None:intergenic
TACTGCTGCAAGGTTGAGCA+AGG 0.529910 2.3:+44653963 MS.gene062045:CDS
TTCATCAGAGTAAATGAAGA+AGG 0.535238 2.3:+44653922 MS.gene062045:CDS
TAGGACGGAATGGAGATAAG+AGG 0.535652 2.3:-44652532 None:intergenic
CTACTCAAGGACGTTGCTCA+TGG 0.538812 2.3:+44652552 MS.gene062045:CDS
CGCTTAGATCACTCATCAAG+AGG 0.541825 2.3:-44654093 None:intergenic
TGACTGAGTTTCCATTCAGA+AGG 0.547188 2.3:-44653504 None:intergenic
TAAAGTACAATGCATTGCTA+AGG 0.551895 2.3:-44653426 None:intergenic
CATTGTACTTTATAGGAGCA+TGG 0.558936 2.3:+44653437 MS.gene062045:CDS
GTTAGAAAATCAAGTGAAGC+CGG 0.559637 2.3:-44652678 None:intergenic
AGAGATGTCTGGCGATGTCG+AGG 0.560158 2.3:-44652359 None:intergenic
TCGACAAGTTGTTGTTGTGT+AGG 0.563941 2.3:-44652468 None:intergenic
CGTCCTTGAGTAGGACGGAA+TGG 0.566952 2.3:-44652542 None:intergenic
CAATTGAAACAAGTGAAAGT+AGG 0.570247 2.3:+44653736 MS.gene062045:CDS
CAGTTTATTGAAGCATATGA+CGG 0.572175 2.3:+44653556 MS.gene062045:CDS
TCTCTAATTAGAAACAAGAA+GGG 0.572834 2.3:-44654027 None:intergenic
GTCAAACCTCCAGGAACGAA+TGG 0.572853 2.3:-44653838 None:intergenic
TCTCCATTCCGTCCTACTCA+AGG 0.586314 2.3:+44652539 MS.gene062045:CDS
TTGCTGCAGCTACTGCTGCA+AGG 0.592904 2.3:+44653953 MS.gene062045:CDS
TACCTTGAAGGAGTTAGGAG+TGG 0.601782 2.3:+44653810 MS.gene062045:CDS
CATCGACAAAAGAGAGGTGA+GGG 0.622221 2.3:-44652581 None:intergenic
CTCAAGGACGTTGCTCATGG+TGG 0.626502 2.3:+44652555 MS.gene062045:CDS
CATGAGCAACGTCCTTGAGT+AGG 0.628321 2.3:-44652551 None:intergenic
GGAATGGAGATAAGAGGCGA+AGG 0.632838 2.3:-44652526 None:intergenic
ATCAATCACTAACCAAACAA+AGG 0.635395 2.3:+44652332 MS.gene062045:CDS
TAATTAGAAACAAGAAGGGG+TGG 0.635445 2.3:-44654023 None:intergenic
CTCTAATTAGAAACAAGAAG+GGG 0.642276 2.3:-44654026 None:intergenic
AGCAACGTCCTTGAGTAGGA+CGG 0.642446 2.3:-44652547 None:intergenic
TCTGAATGGAAACTCAGTCA+AGG 0.645177 2.3:+44653507 MS.gene062045:CDS
GAGATGTCTGGCGATGTCGA+GGG 0.645815 2.3:-44652358 None:intergenic
GATTGGAGGATTTGAACCGG+AGG 0.649916 2.3:-44652494 None:intergenic
ATTAAAGAACTTCTTCCTCG+AGG 0.654402 2.3:+44653376 MS.gene062045:CDS
GATCTATCAACTGGTCCTCG+AGG 0.668347 2.3:-44653391 None:intergenic
TTAACTTCAAAGTTTAGTGG+CGG 0.668795 2.3:-44654000 None:intergenic
CCATCGACAAAAGAGAGGTG+AGG 0.669785 2.3:-44652582 None:intergenic
ACTGCTGCAAGGTTGAGCAA+GGG 0.682779 2.3:+44653964 MS.gene062045:CDS
TGATAGTTACAAAGCAACGC+CGG 0.690968 2.3:+44652659 MS.gene062045:CDS
ATACACCATCGACAAAAGAG+AGG 0.698271 2.3:-44652587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAGATATTTAAATACATAAT+TGG - chr2.3:44653096-44653115 None:intergenic 15.0%
!! TGAAAGTTGTATTATATATT+TGG + chr2.3:44652991-44653010 MS.gene062045:intron 15.0%
!!! TAATAAGTTGATTTAGTTAT+CGG + chr2.3:44652817-44652836 MS.gene062045:intron 15.0%
!! AAAAAAAGTGAATTTATGGT+CGG + chr2.3:44653333-44653352 MS.gene062045:CDS 20.0%
!! AAGTTGTATTATATATTTGG+AGG + chr2.3:44652994-44653013 MS.gene062045:intron 20.0%
!! ATAATTGGAATTTCTTTGAT+TGG - chr2.3:44653081-44653100 None:intergenic 20.0%
!! CAACTTTCAATTCAAATAAA+AGG - chr2.3:44652980-44652999 None:intergenic 20.0%
!! TGACAAAAAAAGTGAATTTA+TGG + chr2.3:44653329-44653348 MS.gene062045:CDS 20.0%
!!! AAGTTATTTCATTGATTAAC+AGG - chr2.3:44652735-44652754 None:intergenic 20.0%
!!! CATATAGCCAAAATATTTTA+GGG - chr2.3:44652874-44652893 None:intergenic 20.0%
!!! TCATATAGCCAAAATATTTT+AGG - chr2.3:44652875-44652894 None:intergenic 20.0%
! AATCAATGAAATAACTTCGT+TGG + chr2.3:44652738-44652757 MS.gene062045:intron 25.0%
! AGTAAATCAAATCACATAGA+AGG - chr2.3:44652779-44652798 None:intergenic 25.0%
! CAACTTATTAAAATACATCC+TGG - chr2.3:44652807-44652826 None:intergenic 25.0%
! GAAATATGTGAGAAACAAAA+AGG - chr2.3:44653894-44653913 None:intergenic 25.0%
! TCTAATTAGAGAAGATTTGA+CGG + chr2.3:44654038-44654057 MS.gene062045:CDS 25.0%
! TCTCTAATTAGAAACAAGAA+GGG - chr2.3:44654030-44654049 None:intergenic 25.0%
! TTCTCTAATTAGAAACAAGA+AGG - chr2.3:44654031-44654050 None:intergenic 25.0%
!! ATATATTTGGAGGTATGAAT+TGG + chr2.3:44653004-44653023 MS.gene062045:intron 25.0%
!! ATGCAAACCCTAAAATATTT+TGG + chr2.3:44652864-44652883 MS.gene062045:intron 25.0%
!! TATTTCATTGATTAACAGGA+AGG - chr2.3:44652731-44652750 None:intergenic 25.0%
!!! GTATCTTGACCTTTTTTATA+AGG - chr2.3:44653601-44653620 None:intergenic 25.0%
!!! TGATGCTCTAAAATCATTTT+AGG - chr2.3:44653178-44653197 None:intergenic 25.0%
!!! TGTATTTGATGTGGTTTTAA+AGG + chr2.3:44653297-44653316 MS.gene062045:intron 25.0%
AGCAATGCATTGTACTTTAT+AGG + chr2.3:44653430-44653449 MS.gene062045:CDS 30.0%
ATCAATCACTAACCAAACAA+AGG + chr2.3:44652332-44652351 MS.gene062045:CDS 30.0%
ATCACGTACTATTTGTTTGA+AGG - chr2.3:44652643-44652662 None:intergenic 30.0%
CAATTGAAACAAGTGAAAGT+AGG + chr2.3:44653736-44653755 MS.gene062045:CDS 30.0%
CAGTTTATTGAAGCATATGA+CGG + chr2.3:44653556-44653575 MS.gene062045:CDS 30.0%
CTAATTAGAGAAGATTTGAC+GGG + chr2.3:44654039-44654058 MS.gene062045:CDS 30.0%
CTCTAATTAGAAACAAGAAG+GGG - chr2.3:44654029-44654048 None:intergenic 30.0%
CTTCGTCTTCCTTATAAAAA+AGG + chr2.3:44653589-44653608 MS.gene062045:CDS 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - chr2.3:44653375-44653394 None:intergenic 30.0%
GCTGATTATTGTATTTGATG+TGG + chr2.3:44653288-44653307 MS.gene062045:intron 30.0%
GTAACTATGAACCTATCTTT+AGG - chr2.3:44652929-44652948 None:intergenic 30.0%
TAAAGTACAATGCATTGCTA+AGG - chr2.3:44653429-44653448 None:intergenic 30.0%
TGGTTAACTTCAAAGTTTAG+TGG - chr2.3:44654006-44654025 None:intergenic 30.0%
TTAACTTCAAAGTTTAGTGG+CGG - chr2.3:44654003-44654022 None:intergenic 30.0%
TTCATCAGAGTAAATGAAGA+AGG + chr2.3:44653922-44653941 MS.gene062045:CDS 30.0%
! GATTTGATTTACTTAGTTCC+AGG + chr2.3:44652786-44652805 MS.gene062045:intron 30.0%
! TACTTGGTCTTTAGAAGTAT+TGG - chr2.3:44652905-44652924 None:intergenic 30.0%
! TTCACTTGATTTTCTAACCA+AGG + chr2.3:44652683-44652702 MS.gene062045:CDS 30.0%
! TTTGGTTAGTGATTGATTCT+TGG - chr2.3:44652329-44652348 None:intergenic 30.0%
!!! CACAGTTTTCTGTTTTTGAA+TGG - chr2.3:44653477-44653496 None:intergenic 30.0%
AAAATGAGATATGCACACCT+TGG - chr2.3:44652703-44652722 None:intergenic 35.0%
ATAGTGTAGCTTCATGACTT+CGG + chr2.3:44653038-44653057 MS.gene062045:intron 35.0%
ATCTTCTTGCTTACCATGAA+AGG - chr2.3:44653535-44653554 None:intergenic 35.0%
ATTAAAGAACTTCTTCCTCG+AGG + chr2.3:44653376-44653395 MS.gene062045:CDS 35.0%
CAAGATTCAGTGTTTCATTC+GGG + chr2.3:44653773-44653792 MS.gene062045:CDS 35.0%
CATTGTACTTTATAGGAGCA+TGG + chr2.3:44653437-44653456 MS.gene062045:CDS 35.0%
CCAAGATTCAGTGTTTCATT+CGG + chr2.3:44653772-44653791 MS.gene062045:CDS 35.0%
CGTACTATTTGTTTGAAGGA+AGG - chr2.3:44652639-44652658 None:intergenic 35.0%
GTTAGAAAATCAAGTGAAGC+CGG - chr2.3:44652681-44652700 None:intergenic 35.0%
TAATTAGAAACAAGAAGGGG+TGG - chr2.3:44654026-44654045 None:intergenic 35.0%
TGCTTGAAAACTGTTAGAAG+AGG - chr2.3:44653238-44653257 None:intergenic 35.0%
TTGTTTCAACAAGAGATGTC+TGG - chr2.3:44652373-44652392 None:intergenic 35.0%
! AGCACAATTTGGAGTGATAT+TGG - chr2.3:44652420-44652439 None:intergenic 35.0%
! TGTGATTTTCACCTTCTGAA+TGG + chr2.3:44653493-44653512 MS.gene062045:CDS 35.0%
! TTTTTGCCAAACGCAAAAGA+TGG + chr2.3:44653643-44653662 MS.gene062045:CDS 35.0%
!! AAAAATGGTGGATTCTCTTG+CGG + chr2.3:44653861-44653880 MS.gene062045:CDS 35.0%
!! GGTGAATAGTCTTATGCTAA+AGG - chr2.3:44653157-44653176 None:intergenic 35.0%
ACGGGAACAATCCTCTTTAT+CGG + chr2.3:44654057-44654076 MS.gene062045:CDS 40.0%
AGACCAAGTAGCCTAAAGAT+AGG + chr2.3:44652915-44652934 MS.gene062045:intron 40.0%
AGTGATACCTTGAAGGAGTT+AGG + chr2.3:44653805-44653824 MS.gene062045:CDS 40.0%
ATACACCATCGACAAAAGAG+AGG - chr2.3:44652590-44652609 None:intergenic 40.0%
CCGAATGAAACACTGAATCT+TGG - chr2.3:44653775-44653794 None:intergenic 40.0%
GAACCTATCTTTAGGCTACT+TGG - chr2.3:44652921-44652940 None:intergenic 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - chr2.3:44652625-44652644 None:intergenic 40.0%
GATGATTGGAGGATTTGAAC+CGG - chr2.3:44652500-44652519 None:intergenic 40.0%
TCCTGGAGGTTTGACAAAAA+TGG + chr2.3:44653846-44653865 MS.gene062045:CDS 40.0%
TCTGAATGGAAACTCAGTCA+AGG + chr2.3:44653507-44653526 MS.gene062045:CDS 40.0%
TGAAACCAGTGATACCTTGA+AGG + chr2.3:44653798-44653817 MS.gene062045:CDS 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - chr2.3:44652626-44652645 None:intergenic 40.0%
TGACTGAGTTTCCATTCAGA+AGG - chr2.3:44653507-44653526 None:intergenic 40.0%
TGATAGTTACAAAGCAACGC+CGG + chr2.3:44652659-44652678 MS.gene062045:CDS 40.0%
TGGAGGTTTGACAAAAATGG+TGG + chr2.3:44653849-44653868 MS.gene062045:CDS 40.0%
TGGTCGGAAAAAGAGACAAT+TGG + chr2.3:44653349-44653368 MS.gene062045:CDS 40.0%
TTAGGGTTTGCATCGAATAG+TGG - chr2.3:44652857-44652876 None:intergenic 40.0%
! ATGCTTGCTGATCTATCAAC+TGG - chr2.3:44653403-44653422 None:intergenic 40.0%
! CTCTTTTGTCGATGGTGTAT+GGG + chr2.3:44652590-44652609 MS.gene062045:CDS 40.0%
! TAACTCCTTCAAGGTATCAC+TGG - chr2.3:44653806-44653825 None:intergenic 40.0%
! TCGACAAGTTGTTGTTGTGT+AGG - chr2.3:44652471-44652490 None:intergenic 40.0%
! TCTCTTTTGTCGATGGTGTA+TGG + chr2.3:44652589-44652608 MS.gene062045:CDS 40.0%
!! AAAATGGTGGATTCTCTTGC+GGG + chr2.3:44653862-44653881 MS.gene062045:CDS 40.0%
!! ACCATTTTTGTCAAACCTCC+AGG - chr2.3:44653850-44653869 None:intergenic 40.0%
AACCACTCCTAACTCCTTCA+AGG - chr2.3:44653815-44653834 None:intergenic 45.0%
CATCGACAAAAGAGAGGTGA+GGG - chr2.3:44652584-44652603 None:intergenic 45.0%
CGATAAGGCTGAGCACAATT+TGG - chr2.3:44652431-44652450 None:intergenic 45.0%
CTCAGTCAAGGTTCCTTTCA+TGG + chr2.3:44653519-44653538 MS.gene062045:CDS 45.0%
GAAGGAGTTGAGATGATTGG+AGG - chr2.3:44652511-44652530 None:intergenic 45.0%
TACCTTGAAGGAGTTAGGAG+TGG + chr2.3:44653810-44653829 MS.gene062045:CDS 45.0%
TAGGACGGAATGGAGATAAG+AGG - chr2.3:44652535-44652554 None:intergenic 45.0%
TGAGCACTTGTCCGATAAAG+AGG - chr2.3:44654071-44654090 None:intergenic 45.0%
TGTCGAGGGAAACCTTTGTT+TGG - chr2.3:44652347-44652366 None:intergenic 45.0%
! GACAGTCCATCTTTTGCGTT+TGG - chr2.3:44653652-44653671 None:intergenic 45.0%
! GTTTTACCATTCGTTCCTGG+AGG + chr2.3:44653832-44653851 MS.gene062045:CDS 45.0%
!! AACAACTTGTCGACTTCCTC+CGG + chr2.3:44652478-44652497 MS.gene062045:CDS 45.0%
!! AATCACATAGAAGGCACCAG+AGG - chr2.3:44652770-44652789 None:intergenic 45.0%
!! GTGGTTTTACCATTCGTTCC+TGG + chr2.3:44653829-44653848 MS.gene062045:CDS 45.0%
ACTGCTGCAAGGTTGAGCAA+GGG + chr2.3:44653964-44653983 MS.gene062045:CDS 50.0%
AGCAACGTCCTTGAGTAGGA+CGG - chr2.3:44652550-44652569 None:intergenic 50.0%
AGCAGTAGCTGCAGCAACTT+CGG - chr2.3:44653950-44653969 None:intergenic 50.0%
CATGAGCAACGTCCTTGAGT+AGG - chr2.3:44652554-44652573 None:intergenic 50.0%
CCATCGACAAAAGAGAGGTG+AGG - chr2.3:44652585-44652604 None:intergenic 50.0%
CTACTCAAGGACGTTGCTCA+TGG + chr2.3:44652552-44652571 MS.gene062045:CDS 50.0%
CTTCAGAACCAGCAGCGATA+AGG - chr2.3:44652446-44652465 None:intergenic 50.0%
GATCTATCAACTGGTCCTCG+AGG - chr2.3:44653394-44653413 None:intergenic 50.0%
GATTGGAGGATTTGAACCGG+AGG - chr2.3:44652497-44652516 None:intergenic 50.0%
GGAATGGAGATAAGAGGCGA+AGG - chr2.3:44652529-44652548 None:intergenic 50.0%
GGCGAAGGAGTTGAGATGAT+TGG - chr2.3:44652514-44652533 None:intergenic 50.0%
GTCAAACCTCCAGGAACGAA+TGG - chr2.3:44653841-44653860 None:intergenic 50.0%
TACTGCTGCAAGGTTGAGCA+AGG + chr2.3:44653963-44653982 MS.gene062045:CDS 50.0%
TCTCCATTCCGTCCTACTCA+AGG + chr2.3:44652539-44652558 MS.gene062045:CDS 50.0%
! CCTCACCTCTCTTTTGTCGA+TGG + chr2.3:44652582-44652601 MS.gene062045:CDS 50.0%
!! ACTTCGTTGGTGCTATCCTC+TGG + chr2.3:44652751-44652770 MS.gene062045:intron 50.0%
!! CTTATCGCTGCTGGTTCTGA+AGG + chr2.3:44652444-44652463 MS.gene062045:CDS 50.0%
AAGGACGTTGCTCATGGTGG+TGG + chr2.3:44652558-44652577 MS.gene062045:CDS 55.0%
AGAGATGTCTGGCGATGTCG+AGG - chr2.3:44652362-44652381 None:intergenic 55.0%
CGTCCTTGAGTAGGACGGAA+TGG - chr2.3:44652545-44652564 None:intergenic 55.0%
CTCAAGGACGTTGCTCATGG+TGG + chr2.3:44652555-44652574 MS.gene062045:CDS 55.0%
GAGATGTCTGGCGATGTCGA+GGG - chr2.3:44652361-44652380 None:intergenic 55.0%
TTGCTGCAGCTACTGCTGCA+AGG + chr2.3:44653953-44653972 MS.gene062045:CDS 55.0%
! GTGCTCAGCCTTATCGCTGC+TGG + chr2.3:44652435-44652454 MS.gene062045:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 44652318 44654107 44652318 ID=MS.gene062045
chr2.3 mRNA 44652318 44654107 44652318 ID=MS.gene062045.t1;Parent=MS.gene062045
chr2.3 exon 44652318 44652704 44652318 ID=MS.gene062045.t1.exon1;Parent=MS.gene062045.t1
chr2.3 CDS 44652318 44652704 44652318 ID=cds.MS.gene062045.t1;Parent=MS.gene062045.t1
chr2.3 exon 44653319 44654107 44653319 ID=MS.gene062045.t1.exon2;Parent=MS.gene062045.t1
chr2.3 CDS 44653319 44654107 44653319 ID=cds.MS.gene062045.t1;Parent=MS.gene062045.t1
Gene Sequence

>MS.gene062045

ATGGCTCTCCAAGAATCAATCACTAACCAAACAAAGGTTTCCCTCGACATCGCCAGACATCTCTTGTTGAAACAATCAGACAAGAACGTCGTTTTTTCGCCAATATCACTCCAAATTGTGCTCAGCCTTATCGCTGCTGGTTCTGAAGGTCCTACACAACAACAACTTGTCGACTTCCTCCGGTTCAAATCCTCCAATCATCTCAACTCCTTCGCCTCTTATCTCCATTCCGTCCTACTCAAGGACGTTGCTCATGGTGGTGGCCCTCACCTCTCTTTTGTCGATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAACAAATAGTACGTGATAGTTACAAAGCAACGCCGGCTTCACTTGATTTTCTAACCAAGGTGTGCATATCTCATTTTTTTTTCCTTCCTGTTAATCAATGAAATAACTTCGTTGGTGCTATCCTCTGGTGCCTTCTATGTGATTTGATTTACTTAGTTCCAGGATGTATTTTAATAAGTTGATTTAGTTATCGGAAAAAAAAAAAATACCACTATTCGATGCAAACCCTAAAATATTTTGGCTATATGATAATATACCAATACTTCTAAAGACCAAGTAGCCTAAAGATAGGTTCATAGTTACAATGTTTTGCATTGCATTTATTTGTTTTCCTTTTATTTGAATTGAAAGTTGTATTATATATTTGGAGGTATGAATTGGTTTATATTTTGATAGTGTAGCTTCATGACTTCGGTAAATACAAATTCTAAACCAATCAAAGAAATTCCAATTATGTATTTAAATATCTCTTCAAATTTTACAGTACTAAAGAGAAATAAACTTTAATCCTTTAGCATAAGACTATTCACCTAAAATGATTTTAGAGCATCAATCAACTTCTATGAAAATAATTGACGAATACAACTTTCCTCTTCTAACAGTTTTCAAGCATTCGACTAATTTTTTCAACATATTTGCATAGCTGATTATTGTATTTGATGTGGTTTTAAAGGTTGTTGAAGTGACAAAAAAAGTGAATTTATGGTCGGAAAAAGAGACAATTGGCCTTATTAAAGAACTTCTTCCTCGAGGACCAGTTGATAGATCAGCAAGCATCATCCTTAGCAATGCATTGTACTTTATAGGAGCATGGAATGAGAAGTTCGACCATTCAAAAACAGAAAACTGTGATTTTCACCTTCTGAATGGAAACTCAGTCAAGGTTCCTTTCATGGTAAGCAAGAAGATGCAGTTTATTGAAGCATATGACGGTTCTAAAGTTCTTCGTCTTCCTTATAAAAAAGGTCAAGATACGCGTCAATTCTCTATGTATATTTTTTTGCCAAACGCAAAAGATGGACTGTCAGCTTTAATTGAGAAGATGACTTCAAAATATGAATTACTACACGAAAAGCTTAGTTTTTATGATCAATTGAAACAAGTGAAAGTAGGTGACTTTAAAATTCCAAGATTCAGTGTTTCATTCGGGCTTGAAACCAGTGATACCTTGAAGGAGTTAGGAGTGGTTTTACCATTCGTTCCTGGAGGTTTGACAAAAATGGTGGATTCTCTTGCGGGTCGAAGCCTTTTTGTTTCTCACATATTTCACAAGTCTTTCATCAGAGTAAATGAAGAAGGTACCGAAGTTGCTGCAGCTACTGCTGCAAGGTTGAGCAAGGGTTGTTCATTTTCTCCGCCACTAAACTTTGAAGTTAACCACCCCTTCTTGTTTCTAATTAGAGAAGATTTGACGGGAACAATCCTCTTTATCGGACAAGTGCTCAATCCTCTTGATGAGTGA
Protein sequence

>MS.gene062045.t1

MALQESITNQTKVSLDIARHLLLKQSDKNVVFSPISLQIVLSLIAAGSEGPTQQQLVDFLRFKSSNHLNSFASYLHSVLLKDVAHGGGPHLSFVDGVWVEQTLSLQPSFKQIVRDSYKATPASLDFLTKVVEVTKKVNLWSEKETIGLIKELLPRGPVDRSASIILSNALYFIGAWNEKFDHSKTENCDFHLLNGNSVKVPFMVSKKMQFIEAYDGSKVLRLPYKKGQDTRQFSMYIFLPNAKDGLSALIEKMTSKYELLHEKLSFYDQLKQVKVGDFKIPRFSVSFGLETSDTLKELGVVLPFVPGGLTKMVDSLAGRSLFVSHIFHKSFIRVNEEGTEVAAATAARLSKGCSFSPPLNFEVNHPFLFLIREDLTGTILFIGQVLNPLDE