Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06244.t1 | XP_003602771.2 | 96.2 | 426 | 16 | 0 | 1 | 426 | 1 | 426 | 6.50E-239 | 836.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06244.t1 | Q9M306 | 52.7 | 444 | 187 | 6 | 5 | 426 | 13 | 455 | 3.2e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06244.t1 | G7J3C1 | 96.2 | 426 | 16 | 0 | 1 | 426 | 1 | 426 | 4.7e-239 | 836.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055520 | MS.gene06244 | 0.885629 | 6.90E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06244.t1 | MTR_3g098840 | 96.244 | 426 | 16 | 0 | 1 | 426 | 1 | 426 | 0.0 | 860 |
| MS.gene06244.t1 | MTR_6g033315 | 54.801 | 427 | 174 | 3 | 4 | 413 | 5 | 429 | 2.14e-166 | 474 |
| MS.gene06244.t1 | MTR_7g083480 | 53.687 | 434 | 179 | 5 | 4 | 424 | 5 | 429 | 4.56e-151 | 435 |
| MS.gene06244.t1 | MTR_1g098390 | 48.635 | 403 | 177 | 7 | 21 | 397 | 5 | 403 | 1.38e-133 | 390 |
| MS.gene06244.t1 | MTR_6g038020 | 49.239 | 394 | 168 | 8 | 32 | 397 | 14 | 403 | 2.81e-124 | 367 |
| MS.gene06244.t1 | MTR_6g038020 | 49.239 | 394 | 168 | 8 | 32 | 397 | 17 | 406 | 3.00e-124 | 367 |
| MS.gene06244.t1 | MTR_7g088360 | 53.156 | 301 | 128 | 4 | 21 | 315 | 29 | 322 | 2.44e-109 | 328 |
| MS.gene06244.t1 | MTR_7g088350 | 51.438 | 313 | 138 | 4 | 11 | 315 | 15 | 321 | 1.83e-107 | 325 |
| MS.gene06244.t1 | MTR_5g023230 | 36.264 | 182 | 97 | 6 | 147 | 321 | 144 | 313 | 1.60e-21 | 95.1 |
| MS.gene06244.t1 | MTR_5g023230 | 36.264 | 182 | 97 | 6 | 147 | 321 | 164 | 333 | 2.31e-21 | 95.1 |
| MS.gene06244.t1 | MTR_4g023760 | 28.571 | 266 | 141 | 9 | 51 | 297 | 27 | 262 | 2.48e-21 | 94.0 |
| MS.gene06244.t1 | MTR_7g114080 | 29.947 | 187 | 111 | 3 | 151 | 318 | 160 | 345 | 7.27e-21 | 94.0 |
| MS.gene06244.t1 | MTR_4g116160 | 28.968 | 252 | 150 | 7 | 86 | 325 | 322 | 556 | 7.69e-21 | 95.5 |
| MS.gene06244.t1 | MTR_4g116160 | 28.968 | 252 | 150 | 7 | 86 | 325 | 149 | 383 | 8.78e-21 | 94.7 |
| MS.gene06244.t1 | MTR_7g114080 | 28.718 | 195 | 112 | 3 | 151 | 318 | 160 | 354 | 1.39e-19 | 90.5 |
| MS.gene06244.t1 | MTR_1g112830 | 30.568 | 229 | 122 | 7 | 87 | 307 | 416 | 615 | 1.75e-19 | 91.3 |
| MS.gene06244.t1 | MTR_1g094610 | 28.440 | 218 | 115 | 6 | 87 | 292 | 53 | 241 | 2.25e-18 | 85.1 |
| MS.gene06244.t1 | MTR_7g114080 | 33.803 | 142 | 74 | 2 | 151 | 272 | 160 | 301 | 2.26e-17 | 83.2 |
| MS.gene06244.t1 | MTR_4g092760 | 29.577 | 213 | 124 | 8 | 93 | 292 | 316 | 515 | 2.61e-17 | 84.3 |
| MS.gene06244.t1 | MTR_4g021795 | 27.650 | 217 | 110 | 6 | 103 | 301 | 76 | 263 | 3.46e-17 | 82.0 |
| MS.gene06244.t1 | MTR_4g116160 | 31.852 | 135 | 79 | 3 | 86 | 219 | 322 | 444 | 5.18e-17 | 83.6 |
| MS.gene06244.t1 | MTR_4g092760 | 32.903 | 155 | 89 | 5 | 151 | 292 | 274 | 426 | 7.62e-17 | 82.8 |
| MS.gene06244.t1 | MTR_7g114080 | 52.542 | 59 | 28 | 0 | 151 | 209 | 160 | 218 | 8.84e-15 | 75.5 |
| MS.gene06244.t1 | MTR_7g118050 | 29.245 | 212 | 110 | 10 | 103 | 297 | 83 | 271 | 3.19e-14 | 73.6 |
| MS.gene06244.t1 | MTR_5g023230 | 37.349 | 83 | 48 | 2 | 148 | 230 | 165 | 243 | 5.71e-13 | 68.9 |
| MS.gene06244.t1 | MTR_4g082560 | 32.824 | 131 | 78 | 3 | 152 | 272 | 180 | 310 | 1.20e-12 | 70.1 |
| MS.gene06244.t1 | MTR_7g118050 | 38.298 | 94 | 48 | 3 | 103 | 194 | 83 | 168 | 1.38e-12 | 67.0 |
| MS.gene06244.t1 | MTR_3g115950 | 28.788 | 132 | 82 | 3 | 152 | 272 | 75 | 205 | 4.51e-11 | 65.1 |
| MS.gene06244.t1 | MTR_3g115950 | 28.788 | 132 | 82 | 3 | 152 | 272 | 149 | 279 | 8.12e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06244.t1 | AT3G48760 | 54.439 | 428 | 172 | 6 | 19 | 423 | 26 | 453 | 5.30e-164 | 470 |
| MS.gene06244.t1 | AT3G26935 | 53.623 | 414 | 168 | 5 | 4 | 397 | 5 | 414 | 6.40e-159 | 456 |
| MS.gene06244.t1 | AT5G41060 | 55.639 | 399 | 153 | 6 | 6 | 386 | 7 | 399 | 1.58e-154 | 443 |
| MS.gene06244.t1 | AT5G41060 | 56.684 | 374 | 141 | 5 | 31 | 386 | 14 | 384 | 1.90e-148 | 427 |
| MS.gene06244.t1 | AT4G24630 | 52.299 | 348 | 153 | 5 | 21 | 364 | 4 | 342 | 2.45e-131 | 384 |
| MS.gene06244.t1 | AT5G41060 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.82e-129 | 377 |
| MS.gene06244.t1 | AT5G41060 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 1.82e-129 | 377 |
| MS.gene06244.t1 | AT5G50020 | 56.711 | 298 | 127 | 2 | 21 | 316 | 4 | 301 | 2.81e-126 | 372 |
| MS.gene06244.t1 | AT5G50020 | 56.711 | 298 | 127 | 2 | 21 | 316 | 34 | 331 | 8.40e-126 | 372 |
| MS.gene06244.t1 | AT5G50020 | 54.698 | 298 | 126 | 3 | 21 | 316 | 4 | 294 | 3.48e-118 | 351 |
| MS.gene06244.t1 | AT3G56930 | 52.288 | 306 | 140 | 2 | 16 | 315 | 5 | 310 | 2.38e-111 | 336 |
| MS.gene06244.t1 | AT5G05070 | 52.805 | 303 | 129 | 5 | 20 | 315 | 36 | 331 | 2.23e-108 | 326 |
| MS.gene06244.t1 | AT2G40990 | 39.713 | 418 | 217 | 9 | 5 | 411 | 12 | 405 | 1.94e-95 | 293 |
| MS.gene06244.t1 | AT3G56920 | 43.824 | 340 | 172 | 4 | 21 | 357 | 10 | 333 | 2.28e-92 | 282 |
| MS.gene06244.t1 | AT3G56930 | 47.195 | 303 | 118 | 3 | 19 | 315 | 8 | 274 | 1.24e-89 | 279 |
| MS.gene06244.t1 | AT3G51390 | 31.048 | 248 | 123 | 6 | 86 | 300 | 73 | 305 | 1.53e-20 | 92.4 |
| MS.gene06244.t1 | AT3G51390 | 33.684 | 190 | 111 | 4 | 118 | 300 | 129 | 310 | 7.80e-20 | 90.5 |
| MS.gene06244.t1 | AT3G60800 | 28.814 | 236 | 129 | 6 | 77 | 297 | 59 | 270 | 6.12e-19 | 87.4 |
| MS.gene06244.t1 | AT3G04970 | 31.973 | 147 | 80 | 2 | 151 | 277 | 73 | 219 | 2.76e-18 | 85.5 |
| MS.gene06244.t1 | AT2G14255 | 31.818 | 154 | 92 | 4 | 151 | 292 | 363 | 515 | 6.50e-18 | 86.3 |
| MS.gene06244.t1 | AT4G00840 | 29.930 | 284 | 143 | 13 | 37 | 297 | 5 | 255 | 9.47e-18 | 83.6 |
| MS.gene06244.t1 | AT5G04270 | 29.651 | 172 | 95 | 3 | 103 | 274 | 66 | 211 | 1.63e-17 | 82.8 |
| MS.gene06244.t1 | AT4G22750 | 28.295 | 258 | 135 | 10 | 80 | 313 | 50 | 281 | 2.30e-17 | 82.8 |
| MS.gene06244.t1 | AT3G04970 | 31.973 | 147 | 80 | 2 | 151 | 277 | 160 | 306 | 2.35e-17 | 84.0 |
| MS.gene06244.t1 | AT3G09320 | 30.275 | 218 | 105 | 7 | 102 | 301 | 66 | 254 | 2.03e-16 | 79.7 |
| MS.gene06244.t1 | AT5G20350 | 25.581 | 258 | 164 | 8 | 84 | 330 | 315 | 555 | 1.25e-15 | 79.3 |
| MS.gene06244.t1 | AT4G00840 | 32.530 | 166 | 88 | 6 | 37 | 194 | 5 | 154 | 2.37e-15 | 75.5 |
| MS.gene06244.t1 | AT3G04970 | 31.690 | 142 | 77 | 2 | 151 | 272 | 160 | 301 | 6.31e-15 | 75.9 |
| MS.gene06244.t1 | AT1G69420 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.05e-14 | 74.3 |
| MS.gene06244.t1 | AT1G69420 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.05e-14 | 74.3 |
| MS.gene06244.t1 | AT4G01730 | 27.820 | 133 | 86 | 2 | 150 | 272 | 157 | 289 | 6.20e-12 | 67.8 |
| MS.gene06244.t1 | AT3G22180 | 31.061 | 132 | 79 | 5 | 152 | 272 | 173 | 303 | 9.46e-12 | 67.4 |
Find 99 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATTCTGTTGGTTCTTT+TGG | 0.104120 | 3.1:+78735193 | None:intergenic |
| TCACTTCCATCATAATTATC+TGG | 0.213227 | 3.1:+78736547 | None:intergenic |
| TCAATTAGCCCTTTGTTATA+AGG | 0.231915 | 3.1:+78735280 | None:intergenic |
| CTTGGAGGGAGGTTTATATT+TGG | 0.257102 | 3.1:-78738071 | MS.gene06244:CDS |
| GGGAACAAAGCAGCAGAAAA+TGG | 0.266208 | 3.1:-78734982 | MS.gene06244:CDS |
| CGAAGGATCAACGGTATTTC+CGG | 0.276497 | 3.1:+78738214 | None:intergenic |
| GACAAGTTGCTTCCTTTCTA+AGG | 0.282513 | 3.1:-78735015 | MS.gene06244:CDS |
| CAATTAGCCCTTTGTTATAA+GGG | 0.322127 | 3.1:+78735281 | None:intergenic |
| TTCATTGCTGTCTGGTTTGT+TGG | 0.334463 | 3.1:-78735526 | MS.gene06244:CDS |
| GATTATAAAGACGAGGAATA+TGG | 0.354047 | 3.1:-78735106 | MS.gene06244:CDS |
| TCCATTGACAATTACTTCCT+TGG | 0.361235 | 3.1:+78736480 | None:intergenic |
| AAAGCACAGAAAACAGCAAC+AGG | 0.373823 | 3.1:+78738002 | None:intergenic |
| CTTTCTAAGGCAGTCCTTGT+GGG | 0.391361 | 3.1:-78735002 | MS.gene06244:CDS |
| TGTTATAAGGGTTGACTTGT+CGG | 0.392823 | 3.1:+78735293 | None:intergenic |
| AGTGATACATCTGAGGATTT+AGG | 0.394520 | 3.1:-78735067 | MS.gene06244:CDS |
| CATTGTAAACTGGCATCATA+AGG | 0.394852 | 3.1:+78735149 | None:intergenic |
| ATTGAATATCCAGAGTGATT+AGG | 0.410341 | 3.1:+78737951 | None:intergenic |
| AGCAAAAGGCATGAACATAA+AGG | 0.422939 | 3.1:+78735644 | None:intergenic |
| TCATCAGCCTCATTGTAAAC+TGG | 0.432467 | 3.1:+78735139 | None:intergenic |
| GTAAATATAGATTTCACATC+AGG | 0.435683 | 3.1:+78738047 | None:intergenic |
| ATTATTAGTGCAATGGAAGC+AGG | 0.437732 | 3.1:+78735556 | None:intergenic |
| CCATGGGTTGGTCAGTGTAT+TGG | 0.450019 | 3.1:-78736349 | MS.gene06244:CDS |
| TTGTGCTGATTAGATATGTA+TGG | 0.451420 | 3.1:+78735488 | None:intergenic |
| GGAACAAAGCAGCAGAAAAT+GGG | 0.455188 | 3.1:-78734981 | MS.gene06244:CDS |
| CATGAACATAAAGGCAAAGC+AGG | 0.455937 | 3.1:+78735653 | None:intergenic |
| TATACACATTCATTGCTGTC+TGG | 0.456264 | 3.1:-78735534 | MS.gene06244:CDS |
| ATTGCTGTCTGGTTTGTTGG+AGG | 0.458351 | 3.1:-78735523 | MS.gene06244:CDS |
| GCTACTGAGTTCGCCGGCGC+CGG | 0.464541 | 3.1:+78738236 | None:intergenic |
| GCAGTATGCTTCACACAGAA+AGG | 0.468722 | 3.1:-78735045 | MS.gene06244:CDS |
| AAACAAACATGTAGTAGAAC+CGG | 0.470642 | 3.1:+78735686 | None:intergenic |
| TACTGAGCAATGAGAGCAGC+GGG | 0.473275 | 3.1:+78736408 | None:intergenic |
| CTGACCTCAGGAAGAGATCC+TGG | 0.475106 | 3.1:-78736601 | MS.gene06244:CDS |
| CACTTCCATCATAATTATCT+GGG | 0.480034 | 3.1:+78736548 | None:intergenic |
| CACGGCGACAGCGCAATTAC+CGG | 0.481466 | 3.1:-78735705 | MS.gene06244:intron |
| CAGTATGCTTCACACAGAAA+GGG | 0.481949 | 3.1:-78735044 | MS.gene06244:CDS |
| CTTTGTCTAGATGATTCTGT+TGG | 0.483481 | 3.1:+78735184 | None:intergenic |
| CCTTTCTAAGGCAGTCCTTG+TGG | 0.491773 | 3.1:-78735003 | MS.gene06244:CDS |
| GGTTGACTTGTCGGTCATAC+CGG | 0.492971 | 3.1:+78735302 | None:intergenic |
| TCCAAGGAAGTAATTGTCAA+TGG | 0.493913 | 3.1:-78736481 | MS.gene06244:CDS |
| CCACTCCCAGATAATTATGA+TGG | 0.500454 | 3.1:-78736553 | MS.gene06244:CDS |
| GAATTGCGAGGCACTATGCC+AGG | 0.501439 | 3.1:+78736583 | None:intergenic |
| AGCACAGAAAACAGCAACAG+GGG | 0.504125 | 3.1:+78738004 | None:intergenic |
| ACAAATGCATCCTCCGGCGC+CGG | 0.518692 | 3.1:-78738249 | None:intergenic |
| ACTCAGAGGAGATATCGATC+TGG | 0.527358 | 3.1:-78735597 | MS.gene06244:CDS |
| TTTGCTGGGTTTACATCATG+AGG | 0.527634 | 3.1:-78735627 | MS.gene06244:CDS |
| AAGCGGATCACCAGTGATAG+TGG | 0.528062 | 3.1:-78734911 | MS.gene06244:CDS |
| ATTTCCTTTCCAAGCGCGAT+AGG | 0.533436 | 3.1:+78738181 | None:intergenic |
| CATGATGTAAACCCAGCAAA+AGG | 0.534339 | 3.1:+78735630 | None:intergenic |
| CCACAAGGACTGCCTTAGAA+AGG | 0.535328 | 3.1:+78735003 | None:intergenic |
| TTATTAGTGCAATGGAAGCA+GGG | 0.535975 | 3.1:+78735557 | None:intergenic |
| GATTTGATCATCACTGCCCA+TGG | 0.538217 | 3.1:-78736366 | MS.gene06244:CDS |
| TCATCAGAACCTATCGCGCT+TGG | 0.540838 | 3.1:-78738190 | MS.gene06244:CDS |
| AAGTCAACCCTTATAACAAA+GGG | 0.541030 | 3.1:-78735288 | MS.gene06244:CDS |
| ATTGTAAACTGGCATCATAA+GGG | 0.543614 | 3.1:+78735150 | None:intergenic |
| AAGCACAGAAAACAGCAACA+GGG | 0.545403 | 3.1:+78738003 | None:intergenic |
| TCAAACACAAATGCATCCTC+CGG | 0.547234 | 3.1:-78738255 | None:intergenic |
| TTTCCGGCTACTGAGTTCGC+CGG | 0.553399 | 3.1:+78738230 | None:intergenic |
| AGAACCTATCGCGCTTGGAA+AGG | 0.560307 | 3.1:-78738185 | MS.gene06244:CDS |
| GATCATCACTGCCCATGGGT+TGG | 0.560369 | 3.1:-78736361 | MS.gene06244:CDS |
| ACTGAGTTCGCCGGCGCCGG+AGG | 0.561048 | 3.1:+78738239 | None:intergenic |
| ATTGCTCTTATACTGACCTC+AGG | 0.563603 | 3.1:-78736613 | MS.gene06244:CDS |
| CCATCATAATTATCTGGGAG+TGG | 0.563784 | 3.1:+78736553 | None:intergenic |
| AGGTTCATTACCACTATCAC+TGG | 0.565407 | 3.1:+78734901 | None:intergenic |
| ACCACATTTACCACGATCCA+AGG | 0.572679 | 3.1:-78736497 | MS.gene06244:CDS |
| ACAATTACTTCCTTGGATCG+TGG | 0.582722 | 3.1:+78736487 | None:intergenic |
| TCTGCTGCTTTGTTCCCACA+AGG | 0.583203 | 3.1:+78734988 | None:intergenic |
| CCAATACACTGACCAACCCA+TGG | 0.583973 | 3.1:+78736349 | None:intergenic |
| GCGCCGGCGAACTCAGTAGC+CGG | 0.585327 | 3.1:-78738233 | MS.gene06244:CDS |
| TGTGTATATTATTAGTGCAA+TGG | 0.589926 | 3.1:+78735549 | None:intergenic |
| TTACAATGAGGCTGATGAGG+TGG | 0.589928 | 3.1:-78735134 | MS.gene06244:CDS |
| ACAGAATCATCTAGACAAAG+AGG | 0.591209 | 3.1:-78735181 | MS.gene06244:CDS |
| CAAGTCAACCCTTATAACAA+AGG | 0.591481 | 3.1:-78735289 | MS.gene06244:CDS |
| GATCGTGGTAAATGTGGTGG+TGG | 0.591714 | 3.1:+78736502 | None:intergenic |
| ATTTGATCATCACTGCCCAT+GGG | 0.600506 | 3.1:-78736365 | MS.gene06244:CDS |
| TCTGATGAGCGAAGGATCAA+CGG | 0.601917 | 3.1:+78738205 | None:intergenic |
| AGTATGCTTCACACAGAAAG+GGG | 0.616574 | 3.1:-78735043 | MS.gene06244:CDS |
| TATTAGTGCAATGGAAGCAG+GGG | 0.618463 | 3.1:+78735558 | None:intergenic |
| CGATAGGTTCTGATGAGCGA+AGG | 0.621597 | 3.1:+78738197 | None:intergenic |
| TCCTTGGATCGTGGTAAATG+TGG | 0.622600 | 3.1:+78736496 | None:intergenic |
| GGTTGGTCAGTGTATTGGAC+TGG | 0.624376 | 3.1:-78736344 | MS.gene06244:intron |
| TGATTTAAGTGATACATCTG+AGG | 0.629280 | 3.1:-78735074 | MS.gene06244:CDS |
| TCATAATTATCTGGGAGTGG+AGG | 0.634751 | 3.1:+78736556 | None:intergenic |
| AGTTTACAATGAGGCTGATG+AGG | 0.639849 | 3.1:-78735137 | MS.gene06244:CDS |
| TATGATGCCAGTTTACAATG+AGG | 0.640744 | 3.1:-78735146 | MS.gene06244:CDS |
| ATATCTAATCAGCACAAACC+AGG | 0.643061 | 3.1:-78735482 | MS.gene06244:intron |
| AGCTTCTGATGTTCTTGACG+AGG | 0.657463 | 3.1:-78734954 | MS.gene06244:CDS |
| ATGAACATAAAGGCAAAGCA+GGG | 0.663108 | 3.1:+78735654 | None:intergenic |
| TTGGATCGTGGTAAATGTGG+TGG | 0.667113 | 3.1:+78736499 | None:intergenic |
| CAATACACTGACCAACCCAT+GGG | 0.670201 | 3.1:+78736350 | None:intergenic |
| ATACTGAGCAATGAGAGCAG+CGG | 0.679203 | 3.1:+78736407 | None:intergenic |
| AGTGATAGTGGTAATGAACC+TGG | 0.679603 | 3.1:-78734899 | MS.gene06244:CDS |
| TATGCCAGGATCTCTTCCTG+AGG | 0.701986 | 3.1:+78736597 | None:intergenic |
| AGTGGAGGATAAGAATTGCG+AGG | 0.702045 | 3.1:+78736571 | None:intergenic |
| CATGAGGATCAAGAACTCAG+AGG | 0.703307 | 3.1:-78735611 | MS.gene06244:CDS |
| GAGCAATGAGAGCAGCGGGG+AGG | 0.704186 | 3.1:+78736412 | None:intergenic |
| CTCAGTATGTGATAACTGTG+TGG | 0.713980 | 3.1:-78736392 | MS.gene06244:CDS |
| ACGAAGACGACGAATCAAAG+CGG | 0.721141 | 3.1:-78734928 | MS.gene06244:CDS |
| ACTGAGCAATGAGAGCAGCG+GGG | 0.779041 | 3.1:+78736409 | None:intergenic |
| GATAGTGGTAATGAACCTGG+TGG | 0.817967 | 3.1:-78734896 | MS.gene06244:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTCCATTTCTAATT+AGG | + | chr3.1:78737195-78737214 | None:intergenic | 15.0% |
| !!! | CTTCAAAAATTTTATACAAT+CGG | - | chr3.1:78735491-78735510 | MS.gene06244:CDS | 15.0% |
| !!! | TTGTATAAAATTTTTGAAGT+AGG | + | chr3.1:78735490-78735509 | None:intergenic | 15.0% |
| !!! | TTTGTAATGAAATATTTTCT+TGG | - | chr3.1:78736239-78736258 | MS.gene06244:intron | 15.0% |
| !! | AAACTATAAGAGAAACTATT+TGG | - | chr3.1:78735956-78735975 | MS.gene06244:intron | 20.0% |
| !! | AAACTTCTTCTATTCTAAAT+AGG | + | chr3.1:78735571-78735590 | None:intergenic | 20.0% |
| !! | AACAGAAAAGCTTAATTATT+AGG | + | chr3.1:78734974-78734993 | None:intergenic | 20.0% |
| !! | AGATTTAGATATTAATGAGT+TGG | - | chr3.1:78735981-78736000 | MS.gene06244:intron | 20.0% |
| !! | ATTAAAATGATAGCACAAAT+TGG | + | chr3.1:78736838-78736857 | None:intergenic | 20.0% |
| !! | CTAGATATAAATAAGATTTC+TGG | - | chr3.1:78735662-78735681 | MS.gene06244:CDS | 20.0% |
| !! | TGAATAAAAATGACTTACAA+AGG | + | chr3.1:78735217-78735236 | None:intergenic | 20.0% |
| !!! | AATGCTACTTTTTATTTTTC+AGG | - | chr3.1:78735014-78735033 | MS.gene06244:CDS | 20.0% |
| !!! | CATATGAAAATTTTAGATAC+CGG | - | chr3.1:78737795-78737814 | MS.gene06244:intron | 20.0% |
| !!! | TGTATAGCTAGATATTATTT+TGG | - | chr3.1:78735624-78735643 | MS.gene06244:CDS | 20.0% |
| !!! | TTTTTTTTACCTGATTACTA+TGG | + | chr3.1:78736158-78736177 | None:intergenic | 20.0% |
| ! | AATAGAAGAAGTTTAGCATT+TGG | - | chr3.1:78735577-78735596 | MS.gene06244:CDS | 25.0% |
| ! | ACAAAAGGAACAATCATTAA+CGG | + | chr3.1:78737760-78737779 | None:intergenic | 25.0% |
| ! | AGTTATTCTTAACTCATCAT+GGG | - | chr3.1:78735450-78735469 | MS.gene06244:intron | 25.0% |
| ! | ATAGTAAGTAGTCTCATTTA+AGG | + | chr3.1:78737691-78737710 | None:intergenic | 25.0% |
| ! | ATGAGTTAAGAATAACTAAC+AGG | + | chr3.1:78735447-78735466 | None:intergenic | 25.0% |
| ! | ATTTACCTCCTAATTAGAAA+TGG | - | chr3.1:78737184-78737203 | MS.gene06244:intron | 25.0% |
| ! | CTATATAGTAGAAAAGATAG+TGG | - | chr3.1:78735819-78735838 | MS.gene06244:intron | 25.0% |
| ! | GTAAATATAGATTTCACATC+AGG | + | chr3.1:78735072-78735091 | None:intergenic | 25.0% |
| ! | TAGTTATTCTTAACTCATCA+TGG | - | chr3.1:78735449-78735468 | MS.gene06244:intron | 25.0% |
| ! | TATATCTAGCTAAGTATACT+TGG | + | chr3.1:78735651-78735670 | None:intergenic | 25.0% |
| ! | TGTGTATATTATTAGTGCAA+TGG | + | chr3.1:78737570-78737589 | None:intergenic | 25.0% |
| ! | TTAGCATTTGGACAAATTTA+TGG | - | chr3.1:78735589-78735608 | MS.gene06244:CDS | 25.0% |
| ! | TTATTCCATTTCTAATTAGG+AGG | + | chr3.1:78737192-78737211 | None:intergenic | 25.0% |
| ! | TTCATAACTTGAATCCATTA+GGG | - | chr3.1:78735385-78735404 | MS.gene06244:intron | 25.0% |
| !! | CACTATCTTTTCTACTATAT+AGG | + | chr3.1:78735821-78735840 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTCAT+AGG | + | chr3.1:78735952-78735971 | None:intergenic | 25.0% |
| !! | TATTGTTGTTGTAAACTCTA+TGG | - | chr3.1:78736063-78736082 | MS.gene06244:intron | 25.0% |
| !! | TGAAATATTTTCTTGGTGAA+TGG | - | chr3.1:78736246-78736265 | MS.gene06244:intron | 25.0% |
| !! | TTGTTTCTTTGCATGTATAT+TGG | - | chr3.1:78737233-78737252 | MS.gene06244:intron | 25.0% |
| !!! | ATTTTTCAGGTGTTTTTTCT+TGG | - | chr3.1:78735027-78735046 | MS.gene06244:CDS | 25.0% |
| !!! | CTGAAATTGTTTTTGGATAT+GGG | + | chr3.1:78737893-78737912 | None:intergenic | 25.0% |
| !!! | TAGAAAAGATAGTGGAAAAT+AGG | - | chr3.1:78735827-78735846 | MS.gene06244:intron | 25.0% |
| AAACAAACATGTAGTAGAAC+CGG | + | chr3.1:78737433-78737452 | None:intergenic | 30.0% | |
| AAGTCAACCCTTATAACAAA+GGG | - | chr3.1:78737828-78737847 | MS.gene06244:intron | 30.0% | |
| AATTGACAGCTTAGTCAATA+AGG | + | chr3.1:78737144-78737163 | None:intergenic | 30.0% | |
| AGTTAGATTACAAGAGATAG+AGG | - | chr3.1:78735922-78735941 | MS.gene06244:intron | 30.0% | |
| ATTGAATATCCAGAGTGATT+AGG | + | chr3.1:78735168-78735187 | None:intergenic | 30.0% | |
| ATTGACAGCTTAGTCAATAA+GGG | + | chr3.1:78737143-78737162 | None:intergenic | 30.0% | |
| ATTGTAAACTGGCATCATAA+GGG | + | chr3.1:78737969-78737988 | None:intergenic | 30.0% | |
| CACTTCCATCATAATTATCT+GGG | + | chr3.1:78736571-78736590 | None:intergenic | 30.0% | |
| CCATATCCAAAAACAATTTC+AGG | - | chr3.1:78737891-78737910 | MS.gene06244:intron | 30.0% | |
| CTCTTTGCTTTATATGTACA+CGG | - | chr3.1:78737393-78737412 | MS.gene06244:intron | 30.0% | |
| CTTCATAACTTGAATCCATT+AGG | - | chr3.1:78735384-78735403 | MS.gene06244:intron | 30.0% | |
| GATTATAAAGACGAGGAATA+TGG | - | chr3.1:78738010-78738029 | MS.gene06244:CDS | 30.0% | |
| GGAAAAAGATTATAAAGACG+AGG | - | chr3.1:78738003-78738022 | MS.gene06244:CDS | 30.0% | |
| GTAAGAAAAACGAACTAGAA+AGG | + | chr3.1:78737735-78737754 | None:intergenic | 30.0% | |
| GTCAATTTACTGTGATCAAA+TGG | - | chr3.1:78737157-78737176 | MS.gene06244:intron | 30.0% | |
| TACGCATCATAAACCATATT+TGG | + | chr3.1:78736009-78736028 | None:intergenic | 30.0% | |
| TATTATTGTTGTCGATGTGT+CGG | - | chr3.1:78735342-78735361 | MS.gene06244:intron | 30.0% | |
| TCACTTCCATCATAATTATC+TGG | + | chr3.1:78736572-78736591 | None:intergenic | 30.0% | |
| TCCACTAAAATTGTTTGTTC+AGG | + | chr3.1:78736926-78736945 | None:intergenic | 30.0% | |
| TGATAACTGATAAGACTAGA+CGG | - | chr3.1:78735752-78735771 | MS.gene06244:intron | 30.0% | |
| TGATTTAAGTGATACATCTG+AGG | - | chr3.1:78738042-78738061 | MS.gene06244:CDS | 30.0% | |
| ! | AACATTGACTAAGTTGTCAA+AGG | - | chr3.1:78736945-78736964 | MS.gene06244:intron | 30.0% |
| ! | ACATTGACTAAGTTGTCAAA+GGG | - | chr3.1:78736946-78736965 | MS.gene06244:intron | 30.0% |
| ! | AGCTATATCCAACTTTTAGA+GGG | - | chr3.1:78736306-78736325 | MS.gene06244:intron | 30.0% |
| ! | ATACAATCGGTTAGTTGAAA+AGG | - | chr3.1:78735504-78735523 | MS.gene06244:CDS | 30.0% |
| ! | CAATTAGCCCTTTGTTATAA+GGG | + | chr3.1:78737838-78737857 | None:intergenic | 30.0% |
| ! | CATAATTACCCTCTAAAAGT+TGG | + | chr3.1:78736317-78736336 | None:intergenic | 30.0% |
| ! | TAACGTGTTTAGGATTAAAG+TGG | + | chr3.1:78736464-78736483 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr3.1:78735993-78736012 | MS.gene06244:intron | 30.0% |
| ! | TAGCTATATCCAACTTTTAG+AGG | - | chr3.1:78736305-78736324 | MS.gene06244:intron | 30.0% |
| ! | TCAATTAGCCCTTTGTTATA+AGG | + | chr3.1:78737839-78737858 | None:intergenic | 30.0% |
| ! | TCCTGAACAAACAATTTTAG+TGG | - | chr3.1:78736922-78736941 | MS.gene06244:intron | 30.0% |
| !! | TTGTGCTGATTAGATATGTA+TGG | + | chr3.1:78737631-78737650 | None:intergenic | 30.0% |
| !!! | ATTGTTTTTGGATATGGGAA+TGG | + | chr3.1:78737888-78737907 | None:intergenic | 30.0% |
| !!! | CCTGAAATTGTTTTTGGATA+TGG | + | chr3.1:78737894-78737913 | None:intergenic | 30.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr3.1:78735842-78735861 | MS.gene06244:intron | 35.0% | |
| AAAATGAAGCGAAATGTGTC+AGG | - | chr3.1:78736126-78736145 | MS.gene06244:intron | 35.0% | |
| ACAGAATCATCTAGACAAAG+AGG | - | chr3.1:78737935-78737954 | MS.gene06244:CDS | 35.0% | |
| AGTAAGAAGAGTAGATCAGA+TGG | - | chr3.1:78735894-78735913 | MS.gene06244:intron | 35.0% | |
| AGTGATACATCTGAGGATTT+AGG | - | chr3.1:78738049-78738068 | MS.gene06244:CDS | 35.0% | |
| AGTTAAGTAGTGTTCAAACC+TGG | + | chr3.1:78737655-78737674 | None:intergenic | 35.0% | |
| AGTTGAGATAACTTCTTGCA+TGG | + | chr3.1:78736206-78736225 | None:intergenic | 35.0% | |
| ATAATTCAATGTGTCAGCGT+CGG | + | chr3.1:78735306-78735325 | None:intergenic | 35.0% | |
| ATATCTAATCAGCACAAACC+AGG | - | chr3.1:78737634-78737653 | MS.gene06244:intron | 35.0% | |
| ATGAACATAAAGGCAAAGCA+GGG | + | chr3.1:78737465-78737484 | None:intergenic | 35.0% | |
| ATTATTAGTGCAATGGAAGC+AGG | + | chr3.1:78737563-78737582 | None:intergenic | 35.0% | |
| CAAGTCAACCCTTATAACAA+AGG | - | chr3.1:78737827-78737846 | MS.gene06244:intron | 35.0% | |
| CATTGTAAACTGGCATCATA+AGG | + | chr3.1:78737970-78737989 | None:intergenic | 35.0% | |
| CGTGTACATATAAAGCAAAG+AGG | + | chr3.1:78737395-78737414 | None:intergenic | 35.0% | |
| CTTTGTCTAGATGATTCTGT+TGG | + | chr3.1:78737935-78737954 | None:intergenic | 35.0% | |
| GATAACTGATAAGACTAGAC+GGG | - | chr3.1:78735753-78735772 | MS.gene06244:intron | 35.0% | |
| GCAATACATGTAACGTGTTT+AGG | + | chr3.1:78736474-78736493 | None:intergenic | 35.0% | |
| GGACTACTTGTGTTAAGAAA+TGG | - | chr3.1:78736084-78736103 | MS.gene06244:intron | 35.0% | |
| GTTAAGAATAACTAACAGGC+AGG | + | chr3.1:78735443-78735462 | None:intergenic | 35.0% | |
| GTTGTTGTCATGTGATTGAA+AGG | - | chr3.1:78736990-78737009 | MS.gene06244:intron | 35.0% | |
| TAGACTGCACATAGAACAAA+AGG | + | chr3.1:78737775-78737794 | None:intergenic | 35.0% | |
| TATACACATTCATTGCTGTC+TGG | - | chr3.1:78737582-78737601 | MS.gene06244:intron | 35.0% | |
| TATGATGCCAGTTTACAATG+AGG | - | chr3.1:78737970-78737989 | MS.gene06244:CDS | 35.0% | |
| TCCAAGGAAGTAATTGTCAA+TGG | - | chr3.1:78736635-78736654 | MS.gene06244:intron | 35.0% | |
| TCCATTGACAATTACTTCCT+TGG | + | chr3.1:78736639-78736658 | None:intergenic | 35.0% | |
| TGTGTTAAGAAATGGAGCTA+GGG | - | chr3.1:78736092-78736111 | MS.gene06244:intron | 35.0% | |
| TTATTAGTGCAATGGAAGCA+GGG | + | chr3.1:78737562-78737581 | None:intergenic | 35.0% | |
| TTGTGTTAAGAAATGGAGCT+AGG | - | chr3.1:78736091-78736110 | MS.gene06244:intron | 35.0% | |
| ! | AGATTTCTGGATATTGCTTG+TGG | - | chr3.1:78735675-78735694 | MS.gene06244:CDS | 35.0% |
| ! | AGCAAAAGGCATGAACATAA+AGG | + | chr3.1:78737475-78737494 | None:intergenic | 35.0% |
| ! | AGTAGTCTCATTTAAGGTCA+AGG | + | chr3.1:78737685-78737704 | None:intergenic | 35.0% |
| ! | ATTAGGGTAGTGCTTTAAGT+AGG | - | chr3.1:78735401-78735420 | MS.gene06244:intron | 35.0% |
| ! | CAAAAACAATTTCAGGTCCA+AGG | - | chr3.1:78737898-78737917 | MS.gene06244:intron | 35.0% |
| ! | CATTGACTAAGTTGTCAAAG+GGG | - | chr3.1:78736947-78736966 | MS.gene06244:intron | 35.0% |
| ! | CTTGGACCTGAAATTGTTTT+TGG | + | chr3.1:78737900-78737919 | None:intergenic | 35.0% |
| ! | GATGATTTTCCTAATCACTC+TGG | - | chr3.1:78735156-78735175 | MS.gene06244:CDS | 35.0% |
| ! | GTAGTCTCATTTAAGGTCAA+GGG | + | chr3.1:78737684-78737703 | None:intergenic | 35.0% |
| ! | TACTTAAAGCACTACCCTAA+TGG | + | chr3.1:78735402-78735421 | None:intergenic | 35.0% |
| ! | TGGATTCAAGTTATGAAGCA+CGG | + | chr3.1:78735382-78735401 | None:intergenic | 35.0% |
| ! | TTATGTTCATGCCTTTTGCT+GGG | - | chr3.1:78737475-78737494 | MS.gene06244:intron | 35.0% |
| ! | TTTATGTTCATGCCTTTTGC+TGG | - | chr3.1:78737474-78737493 | MS.gene06244:intron | 35.0% |
| !! | AGATAGTGGAAAATAGGCTT+AGG | - | chr3.1:78735833-78735852 | MS.gene06244:intron | 35.0% |
| !! | AGGTTTTGACCATAGTAATC+AGG | - | chr3.1:78736146-78736165 | MS.gene06244:intron | 35.0% |
| !! | TGTTATAAGGGTTGACTTGT+CGG | + | chr3.1:78737826-78737845 | None:intergenic | 35.0% |
| !!! | CTTACCCTGTTTTTTTACAC+AGG | + | chr3.1:78737044-78737063 | None:intergenic | 35.0% |
| !!! | GATGATTCTGTTGGTTCTTT+TGG | + | chr3.1:78737926-78737945 | None:intergenic | 35.0% |
| !!! | TTCAGGTGTTTTTTCTTGGA+GGG | - | chr3.1:78735031-78735050 | MS.gene06244:CDS | 35.0% |
| !!! | TTTCAGGTGTTTTTTCTTGG+AGG | - | chr3.1:78735030-78735049 | MS.gene06244:CDS | 35.0% |
| AAAGCACAGAAAACAGCAAC+AGG | + | chr3.1:78735117-78735136 | None:intergenic | 40.0% | |
| AACAACAATATCCCACCAAG+TGG | + | chr3.1:78736053-78736072 | None:intergenic | 40.0% | |
| AACACGTTACATGTATTGCC+AGG | - | chr3.1:78736475-78736494 | MS.gene06244:CDS | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr3.1:78735897-78735916 | MS.gene06244:intron | 40.0% | |
| AAGCACAGAAAACAGCAACA+GGG | + | chr3.1:78735116-78735135 | None:intergenic | 40.0% | |
| ACAACAATATCCCACCAAGT+GGG | + | chr3.1:78736052-78736071 | None:intergenic | 40.0% | |
| ACAATTACTTCCTTGGATCG+TGG | + | chr3.1:78736632-78736651 | None:intergenic | 40.0% | |
| AGCCTCCTGTGTAAAAAAAC+AGG | - | chr3.1:78737036-78737055 | MS.gene06244:intron | 40.0% | |
| AGGTTCATTACCACTATCAC+TGG | + | chr3.1:78738218-78738237 | None:intergenic | 40.0% | |
| AGTATGCTTCACACAGAAAG+GGG | - | chr3.1:78738073-78738092 | MS.gene06244:CDS | 40.0% | |
| AGTTTACAATGAGGCTGATG+AGG | - | chr3.1:78737979-78737998 | MS.gene06244:CDS | 40.0% | |
| ATAACTAACAGGCAGGTCAT+AGG | + | chr3.1:78735436-78735455 | None:intergenic | 40.0% | |
| ATTGCTCTTATACTGACCTC+AGG | - | chr3.1:78736503-78736522 | MS.gene06244:CDS | 40.0% | |
| ATTTGATCATCACTGCCCAT+GGG | - | chr3.1:78736751-78736770 | MS.gene06244:intron | 40.0% | |
| CAGTATGCTTCACACAGAAA+GGG | - | chr3.1:78738072-78738091 | MS.gene06244:CDS | 40.0% | |
| CATGAACATAAAGGCAAAGC+AGG | + | chr3.1:78737466-78737485 | None:intergenic | 40.0% | |
| CATGATGTAAACCCAGCAAA+AGG | + | chr3.1:78737489-78737508 | None:intergenic | 40.0% | |
| CCACTCCCAGATAATTATGA+TGG | - | chr3.1:78736563-78736582 | MS.gene06244:CDS | 40.0% | |
| CCATCATAATTATCTGGGAG+TGG | + | chr3.1:78736566-78736585 | None:intergenic | 40.0% | |
| CGTAATTTGATCCATGTAGC+CGG | - | chr3.1:78736025-78736044 | MS.gene06244:intron | 40.0% | |
| CTCAGTATGTGATAACTGTG+TGG | - | chr3.1:78736724-78736743 | MS.gene06244:intron | 40.0% | |
| CTGCGTACAATACACCAAAA+TGG | - | chr3.1:78737065-78737084 | MS.gene06244:intron | 40.0% | |
| CTTGGAGGGAGGTTTATATT+TGG | - | chr3.1:78735045-78735064 | MS.gene06244:CDS | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3.1:78735841-78735860 | MS.gene06244:intron | 40.0% | |
| GACAAGTTGCTTCCTTTCTA+AGG | - | chr3.1:78738101-78738120 | MS.gene06244:intron | 40.0% | |
| GACCAATGAGTGTGATGTTT+GGG | + | chr3.1:78737275-78737294 | None:intergenic | 40.0% | |
| GCCTCCTGTGTAAAAAAACA+GGG | - | chr3.1:78737037-78737056 | MS.gene06244:intron | 40.0% | |
| GGAACAAAGCAGCAGAAAAT+GGG | - | chr3.1:78738135-78738154 | MS.gene06244:intron | 40.0% | |
| GTATAAGAGCAATCAGAACC+TGG | + | chr3.1:78736496-78736515 | None:intergenic | 40.0% | |
| TAGTGGAAAATAGGCTTAGG+TGG | - | chr3.1:78735836-78735855 | MS.gene06244:intron | 40.0% | |
| TATTAGTGCAATGGAAGCAG+GGG | + | chr3.1:78737561-78737580 | None:intergenic | 40.0% | |
| TCATAATTATCTGGGAGTGG+AGG | + | chr3.1:78736563-78736582 | None:intergenic | 40.0% | |
| TCATCAGCCTCATTGTAAAC+TGG | + | chr3.1:78737980-78737999 | None:intergenic | 40.0% | |
| TGACACATTAGAGAGAGAGT+TGG | - | chr3.1:78735788-78735807 | MS.gene06244:intron | 40.0% | |
| TGACCAATGAGTGTGATGTT+TGG | + | chr3.1:78737276-78737295 | None:intergenic | 40.0% | |
| TTCCCAAACATCACACTCAT+TGG | - | chr3.1:78737270-78737289 | MS.gene06244:intron | 40.0% | |
| TTTGCTGGGTTTACATCATG+AGG | - | chr3.1:78737489-78737508 | MS.gene06244:intron | 40.0% | |
| ! | GGTTAGTTGAAAAGGACTTG+AGG | - | chr3.1:78735512-78735531 | MS.gene06244:CDS | 40.0% |
| ! | TTCATTGCTGTCTGGTTTGT+TGG | - | chr3.1:78737590-78737609 | MS.gene06244:intron | 40.0% |
| !! | AGTGATAGTGGTAATGAACC+TGG | - | chr3.1:78738217-78738236 | MS.gene06244:CDS | 40.0% |
| !!! | ACCCTGTTTTTTTACACAGG+AGG | + | chr3.1:78737041-78737060 | None:intergenic | 40.0% |
| !!! | TGTTGGTTCTTTTGGAACCT+TGG | + | chr3.1:78737918-78737937 | None:intergenic | 40.0% |
| AAAATGGTTGAACCTCGTCC+CGG | - | chr3.1:78737081-78737100 | MS.gene06244:intron | 45.0% | |
| AAGGTCACAGATTCTAGTCC+TGG | - | chr3.1:78737009-78737028 | MS.gene06244:intron | 45.0% | |
| AAGTTGTCAAAGGGGAGTCT+TGG | - | chr3.1:78736955-78736974 | MS.gene06244:intron | 45.0% | |
| ACCACATTTACCACGATCCA+AGG | - | chr3.1:78736619-78736638 | MS.gene06244:CDS | 45.0% | |
| ACGAAGACGACGAATCAAAG+CGG | - | chr3.1:78738188-78738207 | MS.gene06244:CDS | 45.0% | |
| ACTCAGAGGAGATATCGATC+TGG | - | chr3.1:78737519-78737538 | MS.gene06244:intron | 45.0% | |
| AGCACAGAAAACAGCAACAG+GGG | + | chr3.1:78735115-78735134 | None:intergenic | 45.0% | |
| AGCTTCTGATGTTCTTGACG+AGG | - | chr3.1:78738162-78738181 | MS.gene06244:intron | 45.0% | |
| AGTGGAGGATAAGAATTGCG+AGG | + | chr3.1:78736548-78736567 | None:intergenic | 45.0% | |
| ATACTGAGCAATGAGAGCAG+CGG | + | chr3.1:78736712-78736731 | None:intergenic | 45.0% | |
| ATTTCCTTTCCAAGCGCGAT+AGG | + | chr3.1:78734938-78734957 | None:intergenic | 45.0% | |
| CAACAATATCCCACCAAGTG+GGG | + | chr3.1:78736051-78736070 | None:intergenic | 45.0% | |
| CAATACACTGACCAACCCAT+GGG | + | chr3.1:78736769-78736788 | None:intergenic | 45.0% | |
| CATGAGGATCAAGAACTCAG+AGG | - | chr3.1:78737505-78737524 | MS.gene06244:intron | 45.0% | |
| CGAAGGATCAACGGTATTTC+CGG | + | chr3.1:78734905-78734924 | None:intergenic | 45.0% | |
| CTTAGTCAATAAGGGAAGCC+CGG | + | chr3.1:78737135-78737154 | None:intergenic | 45.0% | |
| GATTTGATCATCACTGCCCA+TGG | - | chr3.1:78736750-78736769 | MS.gene06244:intron | 45.0% | |
| GCAGTATGCTTCACACAGAA+AGG | - | chr3.1:78738071-78738090 | MS.gene06244:CDS | 45.0% | |
| GGGAACAAAGCAGCAGAAAA+TGG | - | chr3.1:78738134-78738153 | MS.gene06244:intron | 45.0% | |
| GTTAAGAAATGGAGCTAGGG+AGG | - | chr3.1:78736095-78736114 | MS.gene06244:intron | 45.0% | |
| TCCTTGGATCGTGGTAAATG+TGG | + | chr3.1:78736623-78736642 | None:intergenic | 45.0% | |
| TCTGATGAGCGAAGGATCAA+CGG | + | chr3.1:78734914-78734933 | None:intergenic | 45.0% | |
| TTACAATGAGGCTGATGAGG+TGG | - | chr3.1:78737982-78738001 | MS.gene06244:CDS | 45.0% | |
| TTGGATCGTGGTAAATGTGG+TGG | + | chr3.1:78736620-78736639 | None:intergenic | 45.0% | |
| ! | GATAGTGGTAATGAACCTGG+TGG | - | chr3.1:78738220-78738239 | MS.gene06244:CDS | 45.0% |
| !! | ATTGCTGTCTGGTTTGTTGG+AGG | - | chr3.1:78737593-78737612 | MS.gene06244:intron | 45.0% |
| !! | CTTTCTAAGGCAGTCCTTGT+GGG | - | chr3.1:78738114-78738133 | MS.gene06244:intron | 45.0% |
| !! | GTTTTTGTTGAGTTGCCACC+AGG | + | chr3.1:78738238-78738257 | None:intergenic | 45.0% |
| !!! | AGGTGTTTTTTCTTGGAGGG+AGG | - | chr3.1:78735034-78735053 | MS.gene06244:CDS | 45.0% |
| !! | AATATAATAAAAAATAGTAA+TGG | - | chr3.1:78737210-78737229 | MS.gene06244:intron | 5.0% |
| AAGCGGATCACCAGTGATAG+TGG | - | chr3.1:78738205-78738224 | MS.gene06244:CDS | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr3.1:78737109-78737128 | None:intergenic | 50.0% | |
| AGAACCTATCGCGCTTGGAA+AGG | - | chr3.1:78734931-78734950 | MS.gene06244:CDS | 50.0% | |
| CCAATACACTGACCAACCCA+TGG | + | chr3.1:78736770-78736789 | None:intergenic | 50.0% | |
| CCACAAGGACTGCCTTAGAA+AGG | + | chr3.1:78738116-78738135 | None:intergenic | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr3.1:78737108-78737127 | None:intergenic | 50.0% | |
| GATCGTGGTAAATGTGGTGG+TGG | + | chr3.1:78736617-78736636 | None:intergenic | 50.0% | |
| TACTGAGCAATGAGAGCAGC+GGG | + | chr3.1:78736711-78736730 | None:intergenic | 50.0% | |
| TATGCCAGGATCTCTTCCTG+AGG | + | chr3.1:78736522-78736541 | None:intergenic | 50.0% | |
| TCATCAGAACCTATCGCGCT+TGG | - | chr3.1:78734926-78734945 | MS.gene06244:CDS | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr3.1:78737113-78737132 | MS.gene06244:intron | 50.0% |
| ! | CGATAGGTTCTGATGAGCGA+AGG | + | chr3.1:78734922-78734941 | None:intergenic | 50.0% |
| ! | GGGACGAGGTTCAACCATTT+TGG | + | chr3.1:78737082-78737101 | None:intergenic | 50.0% |
| ! | GGTTGGTCAGTGTATTGGAC+TGG | - | chr3.1:78736772-78736791 | MS.gene06244:intron | 50.0% |
| ! | TTACACAGGAGGCTGTTTCC+AGG | + | chr3.1:78737030-78737049 | None:intergenic | 50.0% |
| !! | CCATGGGTTGGTCAGTGTAT+TGG | - | chr3.1:78736767-78736786 | MS.gene06244:intron | 50.0% |
| !! | CCTTTCTAAGGCAGTCCTTG+TGG | - | chr3.1:78738113-78738132 | MS.gene06244:intron | 50.0% |
| !! | GGTTGACTTGTCGGTCATAC+CGG | + | chr3.1:78737817-78737836 | None:intergenic | 50.0% |
| !! | TCTGCTGCTTTGTTCCCACA+AGG | + | chr3.1:78738131-78738150 | None:intergenic | 50.0% |
| AATATCCCACCAAGTGGGGC+CGG | + | chr3.1:78736047-78736066 | None:intergenic | 55.0% | |
| ACTGAGCAATGAGAGCAGCG+GGG | + | chr3.1:78736710-78736729 | None:intergenic | 55.0% | |
| CTGACCTCAGGAAGAGATCC+TGG | - | chr3.1:78736515-78736534 | MS.gene06244:CDS | 55.0% | |
| GATCATCACTGCCCATGGGT+TGG | - | chr3.1:78736755-78736774 | MS.gene06244:intron | 55.0% | |
| TTTCCGGCTACTGAGTTCGC+CGG | + | chr3.1:78734889-78734908 | None:intergenic | 55.0% | |
| ! | GAATTGCGAGGCACTATGCC+AGG | + | chr3.1:78736536-78736555 | None:intergenic | 55.0% |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr3.1:78737114-78737133 | MS.gene06244:intron | 55.0% |
| CACGGCGACAGCGCAATTAC+CGG | - | chr3.1:78737411-78737430 | MS.gene06244:intron | 60.0% | |
| ACCAAGTGGGGCCGGCTACA+TGG | + | chr3.1:78736039-78736058 | None:intergenic | 65.0% | |
| ATGTAGCCGGCCCCACTTGG+TGG | - | chr3.1:78736038-78736057 | MS.gene06244:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr3.1:78737102-78737121 | None:intergenic | 65.0% | |
| GAGCAATGAGAGCAGCGGGG+AGG | + | chr3.1:78736707-78736726 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr3.1:78737103-78737122 | None:intergenic | 65.0% | |
| TCCATGTAGCCGGCCCCACT+TGG | - | chr3.1:78736035-78736054 | MS.gene06244:intron | 65.0% | |
| TGTAGCCGGCCCCACTTGGT+GGG | - | chr3.1:78736039-78736058 | MS.gene06244:intron | 65.0% | |
| CATACGCAGGGTCCGGGACG+AGG | + | chr3.1:78737096-78737115 | None:intergenic | 70.0% | |
| GCTACTGAGTTCGCCGGCGC+CGG | + | chr3.1:78734883-78734902 | None:intergenic | 70.0% | |
| GTCCCGGACCCTGCGTATGC+AGG | - | chr3.1:78737097-78737116 | MS.gene06244:intron | 70.0% | |
| ! | GCGCCGGCGAACTCAGTAGC+CGG | - | chr3.1:78734883-78734902 | MS.gene06244:CDS | 70.0% |
| ! | ACTGAGTTCGCCGGCGCCGG+AGG | + | chr3.1:78734880-78734899 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78734871 | 78738267 | 78734871 | ID=MS.gene06244 |
| chr3.1 | mRNA | 78734871 | 78738267 | 78734871 | ID=MS.gene06244.t1;Parent=MS.gene06244 |
| chr3.1 | exon | 78738178 | 78738267 | 78738178 | ID=MS.gene06244.t1.exon1;Parent=MS.gene06244.t1 |
| chr3.1 | CDS | 78738178 | 78738267 | 78738178 | ID=cds.MS.gene06244.t1;Parent=MS.gene06244.t1 |
| chr3.1 | exon | 78737920 | 78738102 | 78737920 | ID=MS.gene06244.t1.exon2;Parent=MS.gene06244.t1 |
| chr3.1 | CDS | 78737920 | 78738102 | 78737920 | ID=cds.MS.gene06244.t1;Parent=MS.gene06244.t1 |
| chr3.1 | exon | 78736345 | 78736641 | 78736345 | ID=MS.gene06244.t1.exon3;Parent=MS.gene06244.t1 |
| chr3.1 | CDS | 78736345 | 78736641 | 78736345 | ID=cds.MS.gene06244.t1;Parent=MS.gene06244.t1 |
| chr3.1 | exon | 78735483 | 78735716 | 78735483 | ID=MS.gene06244.t1.exon4;Parent=MS.gene06244.t1 |
| chr3.1 | CDS | 78735483 | 78735716 | 78735483 | ID=cds.MS.gene06244.t1;Parent=MS.gene06244.t1 |
| chr3.1 | exon | 78734871 | 78735347 | 78734871 | ID=MS.gene06244.t1.exon5;Parent=MS.gene06244.t1 |
| chr3.1 | CDS | 78734871 | 78735347 | 78734871 | ID=cds.MS.gene06244.t1;Parent=MS.gene06244.t1 |
| Gene Sequence |
| Protein sequence |
