Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062507.t1 | XP_003597487.1 | 80.3 | 573 | 82 | 3 | 1 | 543 | 1 | 572 | 2.00E-253 | 884.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062507.t1 | Q84RR0 | 62.8 | 541 | 155 | 4 | 1 | 508 | 1 | 528 | 1.7e-200 | 700.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062507.t1 | G7IHR6 | 80.3 | 573 | 82 | 3 | 1 | 543 | 1 | 572 | 1.5e-253 | 884.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058515 | MS.gene062507 | 0.81745 | 3.28E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062507.t1 | MTR_2g098580 | 80.977 | 573 | 78 | 3 | 1 | 543 | 1 | 572 | 0.0 | 909 |
| MS.gene062507.t1 | MTR_3g065380 | 73.264 | 576 | 97 | 6 | 1 | 543 | 1 | 552 | 0.0 | 828 |
| MS.gene062507.t1 | MTR_4g066650 | 69.123 | 570 | 136 | 4 | 1 | 540 | 1 | 560 | 0.0 | 779 |
| MS.gene062507.t1 | MTR_3g065410 | 71.503 | 572 | 92 | 7 | 1 | 543 | 1 | 530 | 0.0 | 777 |
| MS.gene062507.t1 | MTR_5g097670 | 84.615 | 312 | 20 | 1 | 231 | 514 | 4 | 315 | 0.0 | 546 |
| MS.gene062507.t1 | MTR_4g075010 | 39.158 | 475 | 192 | 12 | 65 | 496 | 2 | 422 | 5.72e-104 | 324 |
| MS.gene062507.t1 | MTR_4g075030 | 40.260 | 385 | 180 | 12 | 37 | 406 | 8 | 357 | 1.15e-78 | 252 |
| MS.gene062507.t1 | MTR_4g068940 | 28.991 | 545 | 312 | 17 | 15 | 509 | 1 | 520 | 2.86e-61 | 212 |
| MS.gene062507.t1 | MTR_4g068940 | 28.991 | 545 | 312 | 17 | 15 | 509 | 1 | 520 | 3.68e-61 | 212 |
| MS.gene062507.t1 | MTR_3g462590 | 26.293 | 232 | 156 | 8 | 114 | 337 | 66 | 290 | 1.54e-17 | 84.0 |
| MS.gene062507.t1 | MTR_4g096720 | 54.545 | 66 | 27 | 1 | 251 | 313 | 58 | 123 | 2.63e-16 | 77.0 |
| MS.gene062507.t1 | MTR_3g462570 | 27.074 | 229 | 144 | 10 | 132 | 351 | 33 | 247 | 1.29e-13 | 73.9 |
| MS.gene062507.t1 | MTR_2g044420 | 26.214 | 206 | 140 | 6 | 123 | 321 | 65 | 265 | 1.40e-13 | 71.6 |
| MS.gene062507.t1 | MTR_5g078410 | 27.459 | 244 | 137 | 10 | 109 | 339 | 116 | 332 | 2.93e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062507.t1 | AT2G31510 | 62.218 | 577 | 167 | 6 | 1 | 542 | 1 | 561 | 0.0 | 716 |
| MS.gene062507.t1 | AT1G05890 | 62.646 | 514 | 159 | 3 | 26 | 511 | 16 | 524 | 0.0 | 677 |
| MS.gene062507.t1 | AT1G65430 | 62.852 | 533 | 151 | 6 | 16 | 512 | 4 | 525 | 0.0 | 675 |
| MS.gene062507.t1 | AT2G31510 | 63.209 | 511 | 142 | 4 | 1 | 478 | 1 | 498 | 0.0 | 671 |
| MS.gene062507.t1 | AT2G31510 | 66.191 | 491 | 133 | 3 | 82 | 542 | 2 | 489 | 0.0 | 670 |
| MS.gene062507.t1 | AT1G05890 | 65.328 | 473 | 134 | 2 | 67 | 511 | 96 | 566 | 0.0 | 668 |
| MS.gene062507.t1 | AT2G31770 | 50.195 | 514 | 194 | 8 | 36 | 502 | 2 | 500 | 0.0 | 525 |
| MS.gene062507.t1 | AT2G31760 | 48.842 | 518 | 214 | 7 | 31 | 514 | 2 | 502 | 8.11e-178 | 511 |
| MS.gene062507.t1 | AT2G31780 | 50.545 | 459 | 184 | 6 | 3 | 457 | 20 | 439 | 9.72e-166 | 478 |
| MS.gene062507.t1 | AT1G05880 | 35.573 | 506 | 255 | 13 | 45 | 506 | 12 | 490 | 2.79e-90 | 286 |
| MS.gene062507.t1 | AT1G05880 | 35.573 | 506 | 248 | 15 | 45 | 506 | 12 | 483 | 3.79e-86 | 275 |
| MS.gene062507.t1 | AT1G05880 | 36.099 | 446 | 242 | 12 | 45 | 474 | 12 | 430 | 6.57e-82 | 264 |
| MS.gene062507.t1 | AT3G27710 | 31.702 | 470 | 263 | 13 | 70 | 496 | 45 | 499 | 3.68e-63 | 216 |
| MS.gene062507.t1 | AT4G34370 | 30.669 | 538 | 275 | 20 | 17 | 496 | 2 | 499 | 9.60e-63 | 216 |
| MS.gene062507.t1 | AT2G16090 | 29.511 | 532 | 293 | 17 | 15 | 496 | 1 | 500 | 6.68e-61 | 210 |
| MS.gene062507.t1 | AT2G16090 | 29.511 | 532 | 293 | 17 | 15 | 496 | 1 | 500 | 1.50e-60 | 210 |
| MS.gene062507.t1 | AT2G16090 | 29.511 | 532 | 293 | 17 | 15 | 496 | 1 | 500 | 1.63e-60 | 210 |
| MS.gene062507.t1 | AT2G16090 | 31.072 | 457 | 246 | 15 | 90 | 496 | 3 | 440 | 9.25e-56 | 195 |
| MS.gene062507.t1 | AT2G16090 | 31.072 | 457 | 246 | 15 | 90 | 496 | 3 | 440 | 1.50e-55 | 195 |
| MS.gene062507.t1 | AT5G63750 | 28.138 | 494 | 279 | 14 | 68 | 499 | 9 | 488 | 1.08e-50 | 182 |
| MS.gene062507.t1 | AT5G08730 | 25.586 | 469 | 289 | 9 | 68 | 503 | 8 | 449 | 4.53e-48 | 174 |
| MS.gene062507.t1 | AT4G34370 | 33.618 | 351 | 161 | 13 | 195 | 496 | 5 | 332 | 6.87e-45 | 164 |
| MS.gene062507.t1 | AT3G27720 | 32.727 | 330 | 169 | 10 | 207 | 496 | 143 | 459 | 1.06e-41 | 157 |
| MS.gene062507.t1 | AT5G63760 | 26.230 | 427 | 250 | 14 | 121 | 501 | 2 | 409 | 7.15e-37 | 142 |
| MS.gene062507.t1 | AT5G63760 | 26.230 | 427 | 250 | 14 | 121 | 501 | 2 | 409 | 7.15e-37 | 142 |
| MS.gene062507.t1 | AT5G63760 | 26.230 | 427 | 250 | 14 | 121 | 501 | 2 | 409 | 7.15e-37 | 142 |
| MS.gene062507.t1 | AT5G63730 | 25.684 | 475 | 281 | 14 | 68 | 499 | 9 | 454 | 4.03e-36 | 141 |
| MS.gene062507.t1 | AT5G63760 | 27.187 | 320 | 181 | 10 | 216 | 501 | 2 | 303 | 4.26e-28 | 115 |
| MS.gene062507.t1 | AT5G37560 | 26.400 | 250 | 160 | 9 | 102 | 340 | 142 | 378 | 2.12e-12 | 69.7 |
| MS.gene062507.t1 | AT1G32340 | 25.359 | 209 | 130 | 6 | 145 | 333 | 378 | 580 | 3.63e-12 | 69.7 |
| MS.gene062507.t1 | AT3G14250 | 26.923 | 208 | 130 | 9 | 145 | 338 | 95 | 294 | 8.49e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTACTTCGTCATTATAAT+TGG | 0.164956 | 5.1:-78603934 | MS.gene062507:CDS |
| CCCGCCTGCACTCAACTATT+TGG | 0.208083 | 5.1:+78602589 | None:intergenic |
| TCATGCTGGGGAGGATATAT+TGG | 0.292821 | 5.1:-78603728 | MS.gene062507:CDS |
| CTTCAATGTAAGATCTAATA+AGG | 0.303852 | 5.1:+78603576 | None:intergenic |
| GTCATAGCTGTAGTCATCTT+TGG | 0.333863 | 5.1:+78604162 | None:intergenic |
| GCATTAGGATTCTCATAAAC+TGG | 0.344755 | 5.1:+78603836 | None:intergenic |
| TTACATTGAAGACAATAAAA+AGG | 0.360499 | 5.1:-78603564 | MS.gene062507:intron |
| GCAGCTCTTTGAGTACTTGC+AGG | 0.365534 | 5.1:-78602508 | MS.gene062507:CDS |
| AGGGAAGAAGCGGAAGAGGA+AGG | 0.377086 | 5.1:-78602205 | MS.gene062507:CDS |
| CAGGAGAAAAGTTGGCTTGT+TGG | 0.384380 | 5.1:-78603864 | MS.gene062507:CDS |
| CTATATGAACCGTTTGCATC+TGG | 0.398869 | 5.1:+78602676 | None:intergenic |
| CACTTCAATTAACGATGGTC+CGG | 0.414083 | 5.1:-78603705 | MS.gene062507:CDS |
| CAGAATCTGAAAACACAAAC+TGG | 0.427753 | 5.1:-78603016 | MS.gene062507:CDS |
| GGAAGAAGCGGAAGAGGAAG+GGG | 0.429867 | 5.1:-78602203 | MS.gene062507:CDS |
| GGGAAGAAGCGGAAGAGGAA+GGG | 0.433537 | 5.1:-78602204 | MS.gene062507:CDS |
| AATACGGCAAAATTTATCTC+AGG | 0.435326 | 5.1:+78604043 | None:intergenic |
| AGTAGGATGCTTGCAGCAAC+TGG | 0.437632 | 5.1:+78603950 | None:intergenic |
| AGAAATGGCAAAGAATTCAT+TGG | 0.440218 | 5.1:-78602772 | MS.gene062507:CDS |
| TTCAATCGGTCTCTTACACT+TGG | 0.440721 | 5.1:+78602968 | None:intergenic |
| CATGGTCAGACCATGGTAGA+AGG | 0.447223 | 5.1:-78602872 | MS.gene062507:CDS |
| ACCAAGTGGTGTCCTGCTCC+TGG | 0.450476 | 5.1:-78603188 | MS.gene062507:CDS |
| TTGGTTAGTGCATTAGAGAA+TGG | 0.450983 | 5.1:-78602303 | MS.gene062507:CDS |
| GCTGGCTATGCCTTGGTGCA+TGG | 0.452799 | 5.1:-78602890 | MS.gene062507:CDS |
| GATATCTGATTCTTTCAATA+CGG | 0.457053 | 5.1:+78604027 | None:intergenic |
| GATAGAGTCAGGAGAAAAGT+TGG | 0.459646 | 5.1:-78603872 | MS.gene062507:CDS |
| GAAGCAGTGTGAATCTTAGA+AGG | 0.471251 | 5.1:+78603773 | None:intergenic |
| AGAAAGGGAAGAAGCGGAAG+AGG | 0.474631 | 5.1:-78602209 | MS.gene062507:CDS |
| GACACTGTGCCACAATCCAC+TGG | 0.478077 | 5.1:+78603062 | None:intergenic |
| TCGGTAATGTTAATGAAGCT+TGG | 0.479756 | 5.1:-78603907 | MS.gene062507:CDS |
| ATCAACAGCTGCACCACAAG+CGG | 0.482168 | 5.1:+78603655 | None:intergenic |
| ATTATCATAAGTTATTCTGC+TGG | 0.489502 | 5.1:+78602161 | None:intergenic |
| TATTGAAAGAATCAGATATC+CGG | 0.498546 | 5.1:-78604024 | MS.gene062507:CDS |
| CGTCATTATAATTGGAATGT+CGG | 0.500654 | 5.1:-78603926 | MS.gene062507:CDS |
| ATCAGATATCCGGAAAAGGC+AGG | 0.502816 | 5.1:-78604014 | MS.gene062507:CDS |
| GCTTGCAGCAACTGGTGGTA+TGG | 0.503549 | 5.1:+78603958 | None:intergenic |
| TTGAAGTGGACATATGCATA+TGG | 0.505690 | 5.1:-78602564 | MS.gene062507:CDS |
| ATGTCATATGCATGCACCCT+AGG | 0.505969 | 5.1:+78602940 | None:intergenic |
| GGGCTAGCAACCAATCTTCA+AGG | 0.506634 | 5.1:-78602722 | MS.gene062507:CDS |
| TTAAGTTCATAACCGAGGCT+TGG | 0.509435 | 5.1:-78602614 | MS.gene062507:CDS |
| TCAATCGGTCTCTTACACTT+GGG | 0.509904 | 5.1:+78602969 | None:intergenic |
| TCCAAATAGTTGAGTGCAGG+CGG | 0.516702 | 5.1:-78602590 | MS.gene062507:CDS |
| ACTTAAGCTCTGCTTCAGCT+TGG | 0.521950 | 5.1:+78602631 | None:intergenic |
| AACTATTTGGAACCAAGCCT+CGG | 0.525306 | 5.1:+78602602 | None:intergenic |
| AATGTTGCAGGGAGCAGAAA+GGG | 0.527319 | 5.1:-78602224 | MS.gene062507:CDS |
| TTGCTGACGAAGATAGAGTC+AGG | 0.530108 | 5.1:-78603883 | MS.gene062507:CDS |
| TGTAAGATCTAATAAGGAAA+CGG | 0.530247 | 5.1:+78603582 | None:intergenic |
| GGTTCCAAATAGTTGAGTGC+AGG | 0.533830 | 5.1:-78602593 | MS.gene062507:CDS |
| AAGAATCAGATATCCGGAAA+AGG | 0.538730 | 5.1:-78604018 | MS.gene062507:CDS |
| GCTGCACCACAAGCGGGATC+AGG | 0.541374 | 5.1:+78603662 | None:intergenic |
| TCAGACCATGGTAGAAGGAC+AGG | 0.545302 | 5.1:-78602867 | MS.gene062507:CDS |
| GTGCATATCATCAGAATCCA+TGG | 0.553746 | 5.1:+78604234 | None:intergenic |
| TCCAATTATAATGACGAAGT+AGG | 0.562132 | 5.1:+78603933 | None:intergenic |
| AACCGCCTGTCCTTCTACCA+TGG | 0.564614 | 5.1:+78602862 | None:intergenic |
| GATAATGATTACTTTCATGA+TGG | 0.565105 | 5.1:-78604088 | MS.gene062507:CDS |
| GGGAGCAGAAAGGGAAGAAG+CGG | 0.565609 | 5.1:-78602215 | MS.gene062507:CDS |
| GCATGTTCACAACCAGGAGC+AGG | 0.569609 | 5.1:+78603176 | None:intergenic |
| ACTTCAATTAACGATGGTCC+GGG | 0.571072 | 5.1:-78603704 | MS.gene062507:CDS |
| AAATGTTGCAGGGAGCAGAA+AGG | 0.572457 | 5.1:-78602225 | MS.gene062507:CDS |
| ACCAGGAGCAGGACACCACT+TGG | 0.572721 | 5.1:+78603187 | None:intergenic |
| AGATGTCCTGATCCCGCTTG+TGG | 0.575504 | 5.1:-78603668 | MS.gene062507:CDS |
| CAGCTCTTTGAGTACTTGCA+GGG | 0.579891 | 5.1:-78602507 | MS.gene062507:intron |
| CCAAATAGTTGAGTGCAGGC+GGG | 0.581218 | 5.1:-78602589 | MS.gene062507:CDS |
| CATCTCAGCATCAAGCATCC+CGG | 0.582457 | 5.1:+78603686 | None:intergenic |
| ACACACATTATTATGAGCGG+TGG | 0.585129 | 5.1:-78602743 | MS.gene062507:CDS |
| AGAGAATGGTTTATGTGATG+TGG | 0.585426 | 5.1:-78602289 | MS.gene062507:CDS |
| AAGATTCACACTGCTTCTTG+CGG | 0.591226 | 5.1:-78603767 | MS.gene062507:CDS |
| AGTGCAGGCGGGTATTGAAG+TGG | 0.592470 | 5.1:-78602578 | MS.gene062507:CDS |
| GCTCACCGTCCAGTGGATTG+TGG | 0.593545 | 5.1:-78603071 | MS.gene062507:CDS |
| TGATCTACACCAGATGCAAA+CGG | 0.597629 | 5.1:-78602685 | MS.gene062507:CDS |
| TCAACAGCTGCACCACAAGC+GGG | 0.598994 | 5.1:+78603656 | None:intergenic |
| GGTCTCTTACACTTGGGACA+CGG | 0.599781 | 5.1:+78602975 | None:intergenic |
| CAGCAAAATTCAAAATTGCA+AGG | 0.602082 | 5.1:+78602909 | None:intergenic |
| GGCAGGAGGATGATATCAGT+AGG | 0.602221 | 5.1:-78603997 | MS.gene062507:CDS |
| TTATGTGATGTGGATAGTAA+TGG | 0.606906 | 5.1:-78602279 | MS.gene062507:CDS |
| AGCAAAAGCTATTTGAACAG+AGG | 0.611407 | 5.1:+78603111 | None:intergenic |
| CACACATTATTATGAGCGGT+GGG | 0.617387 | 5.1:-78602742 | MS.gene062507:CDS |
| TCCCTCGATGACGATTTCTA+CGG | 0.622027 | 5.1:-78604193 | MS.gene062507:CDS |
| ACCGTAGAAATCGTCATCGA+GGG | 0.623981 | 5.1:+78604192 | None:intergenic |
| TGAAGATGCTCACCGTCCAG+TGG | 0.630686 | 5.1:-78603078 | MS.gene062507:CDS |
| CAAAATTTATCTCAGGAGCA+AGG | 0.634073 | 5.1:+78604050 | None:intergenic |
| CTGTGCCACAATCCACTGGA+CGG | 0.642823 | 5.1:+78603066 | None:intergenic |
| TGGCAAAGAATTCATTGGAG+AGG | 0.643713 | 5.1:-78602767 | MS.gene062507:CDS |
| GCAGGAGGATGATATCAGTA+GGG | 0.649047 | 5.1:-78603996 | MS.gene062507:CDS |
| AGGATGCTTGCAGCAACTGG+TGG | 0.656384 | 5.1:+78603953 | None:intergenic |
| CTCGATGACGATTTCTACGG+TGG | 0.658535 | 5.1:-78604190 | MS.gene062507:CDS |
| CACCGTAGAAATCGTCATCG+AGG | 0.661533 | 5.1:+78604191 | None:intergenic |
| ATTGGCACTTCAATTAACGA+TGG | 0.666421 | 5.1:-78603710 | MS.gene062507:CDS |
| AGAGCTTAAGTTCATAACCG+AGG | 0.673682 | 5.1:-78602619 | MS.gene062507:CDS |
| ATTGTGGCACAGTGTCGAAG+TGG | 0.679812 | 5.1:-78603055 | MS.gene062507:CDS |
| GACCATGGTAGAAGGACAGG+CGG | 0.685594 | 5.1:-78602864 | MS.gene062507:CDS |
| AGATATCCGGAAAAGGCAGG+AGG | 0.690418 | 5.1:-78604011 | MS.gene062507:CDS |
| TTAACTGCATGTTCACAACC+AGG | 0.709158 | 5.1:+78603170 | None:intergenic |
| CTTGGTGCATGGTCAGACCA+TGG | 0.709540 | 5.1:-78602879 | MS.gene062507:CDS |
| CATGGTCTGACCATGCACCA+AGG | 0.709916 | 5.1:+78602880 | None:intergenic |
| GGTACACACATTATTATGAG+CGG | 0.716244 | 5.1:-78602746 | MS.gene062507:CDS |
| CAAAATTCAAAATTGCAAGG+CGG | 0.738971 | 5.1:+78602912 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAAAAGAAGAGAAA+TGG | - | chr5.1:78603600-78603619 | MS.gene062507:CDS | 20.0% |
| !! | TAAAAACTTCTTCAAGAATT+TGG | - | chr5.1:78604065-78604084 | MS.gene062507:CDS | 20.0% |
| !! | TTACATTGAAGACAATAAAA+AGG | - | chr5.1:78602823-78602842 | MS.gene062507:CDS | 20.0% |
| !!! | TATGAAAACTCTAAAAAAGA+GGG | - | chr5.1:78603565-78603584 | MS.gene062507:CDS | 20.0% |
| !!! | TTATGAAAACTCTAAAAAAG+AGG | - | chr5.1:78603564-78603583 | MS.gene062507:intron | 20.0% |
| ! | AAATCGTTGAATTCTTTAGA+CGG | + | chr5.1:78603982-78604001 | None:intergenic | 25.0% |
| ! | ATTATCATAAGTTATTCTGC+TGG | + | chr5.1:78604229-78604248 | None:intergenic | 25.0% |
| ! | CTTCAATGTAAGATCTAATA+AGG | + | chr5.1:78602814-78602833 | None:intergenic | 25.0% |
| ! | GAGTTTAAAAAAATGTTGCA+GGG | - | chr5.1:78604152-78604171 | MS.gene062507:CDS | 25.0% |
| ! | GATAATGATTACTTTCATGA+TGG | - | chr5.1:78602299-78602318 | MS.gene062507:CDS | 25.0% |
| ! | GATATCTGATTCTTTCAATA+CGG | + | chr5.1:78602363-78602382 | None:intergenic | 25.0% |
| ! | TATTGAAAGAATCAGATATC+CGG | - | chr5.1:78602363-78602382 | MS.gene062507:CDS | 25.0% |
| ! | TGACTAAAATAAAAGAGAGT+TGG | + | chr5.1:78603050-78603069 | None:intergenic | 25.0% |
| ! | TGTAAGATCTAATAAGGAAA+CGG | + | chr5.1:78602808-78602827 | None:intergenic | 25.0% |
| !! | ATGAAAACTCTAAAAAAGAG+GGG | - | chr5.1:78603566-78603585 | MS.gene062507:CDS | 25.0% |
| AATACGGCAAAATTTATCTC+AGG | + | chr5.1:78602347-78602366 | None:intergenic | 30.0% | |
| AATCGTTGAATTCTTTAGAC+GGG | + | chr5.1:78603981-78604000 | None:intergenic | 30.0% | |
| AATGCTAAAAAGCTTACTTG+CGG | - | chr5.1:78602569-78602588 | MS.gene062507:CDS | 30.0% | |
| AGAAATGGCAAAGAATTCAT+TGG | - | chr5.1:78603615-78603634 | MS.gene062507:CDS | 30.0% | |
| CAAAATTCAAAATTGCAAGG+CGG | + | chr5.1:78603478-78603497 | None:intergenic | 30.0% | |
| CAGAAGAAATAAGATCGTTA+TGG | + | chr5.1:78603160-78603179 | None:intergenic | 30.0% | |
| CAGCAAAATTCAAAATTGCA+AGG | + | chr5.1:78603481-78603500 | None:intergenic | 30.0% | |
| CGAGTTTAAAAAAATGTTGC+AGG | - | chr5.1:78604151-78604170 | MS.gene062507:CDS | 30.0% | |
| CGTCATTATAATTGGAATGT+CGG | - | chr5.1:78602461-78602480 | MS.gene062507:intron | 30.0% | |
| TCCAATTATAATGACGAAGT+AGG | + | chr5.1:78602457-78602476 | None:intergenic | 30.0% | |
| TCCTACTTCGTCATTATAAT+TGG | - | chr5.1:78602453-78602472 | MS.gene062507:intron | 30.0% | |
| TGGATTGTATAACAACAAGA+GGG | + | chr5.1:78603140-78603159 | None:intergenic | 30.0% | |
| TTATGTGATGTGGATAGTAA+TGG | - | chr5.1:78604108-78604127 | MS.gene062507:CDS | 30.0% | |
| TTCCAAAATTGTGTAATGTG+TGG | - | chr5.1:78603003-78603022 | MS.gene062507:CDS | 30.0% | |
| ! | AACCACACATTACACAATTT+TGG | + | chr5.1:78603008-78603027 | None:intergenic | 30.0% |
| ! | ATGGATTGTATAACAACAAG+AGG | + | chr5.1:78603141-78603160 | None:intergenic | 30.0% |
| ! | CTTGCAATTTTGAATTTTGC+TGG | - | chr5.1:78603479-78603498 | MS.gene062507:intron | 30.0% |
| ! | TGAAAACTCTAAAAAAGAGG+GGG | - | chr5.1:78603567-78603586 | MS.gene062507:CDS | 30.0% |
| !! | CAAGTAAGCTTTTTAGCATT+AGG | + | chr5.1:78602569-78602588 | None:intergenic | 30.0% |
| !!! | TTAGTCATTGCTATTTTGCA+TGG | - | chr5.1:78603063-78603082 | MS.gene062507:CDS | 30.0% |
| !!! | TTTGTTTTGTTTAGACCAAG+TGG | - | chr5.1:78603185-78603204 | MS.gene062507:CDS | 30.0% |
| AAGAATCAGATATCCGGAAA+AGG | - | chr5.1:78602369-78602388 | MS.gene062507:CDS | 35.0% | |
| AATAATTCTTTGCGTGTTGG+TGG | - | chr5.1:78602936-78602955 | MS.gene062507:CDS | 35.0% | |
| ACGAATAATTCTTTGCGTGT+TGG | - | chr5.1:78602933-78602952 | MS.gene062507:CDS | 35.0% | |
| AGACCGATTGAAAAAAACCT+AGG | - | chr5.1:78603430-78603449 | MS.gene062507:intron | 35.0% | |
| AGAGAATGGTTTATGTGATG+TGG | - | chr5.1:78604098-78604117 | MS.gene062507:CDS | 35.0% | |
| AGCAAAAGCTATTTGAACAG+AGG | + | chr5.1:78603279-78603298 | None:intergenic | 35.0% | |
| ATTGGCACTTCAATTAACGA+TGG | - | chr5.1:78602677-78602696 | MS.gene062507:CDS | 35.0% | |
| ATTTGCCCTAATTTATCACC+TGG | - | chr5.1:78602965-78602984 | MS.gene062507:CDS | 35.0% | |
| CAAAATTTATCTCAGGAGCA+AGG | + | chr5.1:78602340-78602359 | None:intergenic | 35.0% | |
| CAGAATCTGAAAACACAAAC+TGG | - | chr5.1:78603371-78603390 | MS.gene062507:intron | 35.0% | |
| GACCGATTGAAAAAAACCTA+GGG | - | chr5.1:78603431-78603450 | MS.gene062507:intron | 35.0% | |
| GCATTAGGATTCTCATAAAC+TGG | + | chr5.1:78602554-78602573 | None:intergenic | 35.0% | |
| GGTACACACATTATTATGAG+CGG | - | chr5.1:78603641-78603660 | MS.gene062507:CDS | 35.0% | |
| TCAGAATCCATGCAAAATAG+AGG | + | chr5.1:78603112-78603131 | None:intergenic | 35.0% | |
| TCGGTAATGTTAATGAAGCT+TGG | - | chr5.1:78602480-78602499 | MS.gene062507:intron | 35.0% | |
| TGTAGCCAGGTGATAAATTA+GGG | + | chr5.1:78602973-78602992 | None:intergenic | 35.0% | |
| TTGAAGTGGACATATGCATA+TGG | - | chr5.1:78603823-78603842 | MS.gene062507:CDS | 35.0% | |
| TTGGTTAGTGCATTAGAGAA+TGG | - | chr5.1:78604084-78604103 | MS.gene062507:CDS | 35.0% | |
| ! | ATAATTCTTTGCGTGTTGGT+GGG | - | chr5.1:78602937-78602956 | MS.gene062507:CDS | 35.0% |
| ! | ATCTTTGCCTCTATTTTGCA+TGG | - | chr5.1:78603102-78603121 | MS.gene062507:CDS | 35.0% |
| ! | GCAGTTAATTTTGTTGCTGA+TGG | - | chr5.1:78603232-78603251 | MS.gene062507:intron | 35.0% |
| ! | TCTGTTCAAATAGCTTTTGC+TGG | - | chr5.1:78603278-78603297 | MS.gene062507:intron | 35.0% |
| !! | ATCCATACTGTTTTTCATGC+TGG | - | chr5.1:78602645-78602664 | MS.gene062507:CDS | 35.0% |
| !! | TCCATACTGTTTTTCATGCT+GGG | - | chr5.1:78602646-78602665 | MS.gene062507:CDS | 35.0% |
| !!! | CACCCTAGGTTTTTTTCAAT+CGG | + | chr5.1:78603436-78603455 | None:intergenic | 35.0% |
| !!! | GAAGAAGTTTTTAGTCACAC+TGG | + | chr5.1:78604058-78604077 | None:intergenic | 35.0% |
| AAGATTCACACTGCTTCTTG+CGG | - | chr5.1:78602620-78602639 | MS.gene062507:CDS | 40.0% | |
| ACACACATTATTATGAGCGG+TGG | - | chr5.1:78603644-78603663 | MS.gene062507:CDS | 40.0% | |
| ACTTCAATTAACGATGGTCC+GGG | - | chr5.1:78602683-78602702 | MS.gene062507:CDS | 40.0% | |
| AGAGCTTAAGTTCATAACCG+AGG | - | chr5.1:78603768-78603787 | MS.gene062507:CDS | 40.0% | |
| ATTTATCACCTGGCTACACT+TGG | - | chr5.1:78602975-78602994 | MS.gene062507:CDS | 40.0% | |
| CACACATTATTATGAGCGGT+GGG | - | chr5.1:78603645-78603664 | MS.gene062507:CDS | 40.0% | |
| CACTTCAATTAACGATGGTC+CGG | - | chr5.1:78602682-78602701 | MS.gene062507:CDS | 40.0% | |
| CTATATGAACCGTTTGCATC+TGG | + | chr5.1:78603714-78603733 | None:intergenic | 40.0% | |
| GAAGCAGTGTGAATCTTAGA+AGG | + | chr5.1:78602617-78602636 | None:intergenic | 40.0% | |
| GATAGAGTCAGGAGAAAAGT+TGG | - | chr5.1:78602515-78602534 | MS.gene062507:CDS | 40.0% | |
| GTCATAGCTGTAGTCATCTT+TGG | + | chr5.1:78602228-78602247 | None:intergenic | 40.0% | |
| GTGTAGCCAGGTGATAAATT+AGG | + | chr5.1:78602974-78602993 | None:intergenic | 40.0% | |
| TCAATCGGTCTCTTACACTT+GGG | + | chr5.1:78603421-78603440 | None:intergenic | 40.0% | |
| TGATCTACACCAGATGCAAA+CGG | - | chr5.1:78603702-78603721 | MS.gene062507:CDS | 40.0% | |
| TGGCAAAGAATTCATTGGAG+AGG | - | chr5.1:78603620-78603639 | MS.gene062507:CDS | 40.0% | |
| TTAACTGCATGTTCACAACC+AGG | + | chr5.1:78603220-78603239 | None:intergenic | 40.0% | |
| TTAAGTTCATAACCGAGGCT+TGG | - | chr5.1:78603773-78603792 | MS.gene062507:CDS | 40.0% | |
| TTCAATCGGTCTCTTACACT+TGG | + | chr5.1:78603422-78603441 | None:intergenic | 40.0% | |
| TTTATCACCTGGCTACACTT+GGG | - | chr5.1:78602976-78602995 | MS.gene062507:CDS | 40.0% | |
| ! | AACTATTTGGAACCAAGCCT+CGG | + | chr5.1:78603788-78603807 | None:intergenic | 40.0% |
| ! | GAGCTTTTTGCCTTGAAGAT+TGG | + | chr5.1:78603678-78603697 | None:intergenic | 40.0% |
| ! | GATTTTCGCTCAAAACTAGC+TGG | - | chr5.1:78604027-78604046 | MS.gene062507:CDS | 40.0% |
| !! | CCATACTGTTTTTCATGCTG+GGG | - | chr5.1:78602647-78602666 | MS.gene062507:CDS | 40.0% |
| !! | CTTCAGTTCTGAGGAATACT+TGG | + | chr5.1:78603957-78603976 | None:intergenic | 40.0% |
| AAATGTTGCAGGGAGCAGAA+AGG | - | chr5.1:78604162-78604181 | MS.gene062507:CDS | 45.0% | |
| AATGTTGCAGGGAGCAGAAA+GGG | - | chr5.1:78604163-78604182 | MS.gene062507:CDS | 45.0% | |
| ACCGTAGAAATCGTCATCGA+GGG | + | chr5.1:78602198-78602217 | None:intergenic | 45.0% | |
| ACTTAAGCTCTGCTTCAGCT+TGG | + | chr5.1:78603759-78603778 | None:intergenic | 45.0% | |
| ACTTCATCAATGCGCGGAAA+AGG | - | chr5.1:78603927-78603946 | MS.gene062507:CDS | 45.0% | |
| ATCAGATATCCGGAAAAGGC+AGG | - | chr5.1:78602373-78602392 | MS.gene062507:CDS | 45.0% | |
| ATGTCATATGCATGCACCCT+AGG | + | chr5.1:78603450-78603469 | None:intergenic | 45.0% | |
| CAGCTCTTTGAGTACTTGCA+GGG | - | chr5.1:78603880-78603899 | MS.gene062507:CDS | 45.0% | |
| CCCCAGCATGAAAAACAGTA+TGG | + | chr5.1:78602650-78602669 | None:intergenic | 45.0% | |
| GCAGGAGGATGATATCAGTA+GGG | - | chr5.1:78602391-78602410 | MS.gene062507:intron | 45.0% | |
| GGTTCCAAATAGTTGAGTGC+AGG | - | chr5.1:78603794-78603813 | MS.gene062507:CDS | 45.0% | |
| TCATGCTGGGGAGGATATAT+TGG | - | chr5.1:78602659-78602678 | MS.gene062507:CDS | 45.0% | |
| TCCAAATAGTTGAGTGCAGG+CGG | - | chr5.1:78603797-78603816 | MS.gene062507:CDS | 45.0% | |
| TCCCTCGATGACGATTTCTA+CGG | - | chr5.1:78602194-78602213 | MS.gene062507:CDS | 45.0% | |
| TTGCTGACGAAGATAGAGTC+AGG | - | chr5.1:78602504-78602523 | MS.gene062507:intron | 45.0% | |
| ! | TATCATCCTCCTGCCTTTTC+CGG | + | chr5.1:78602385-78602404 | None:intergenic | 45.0% |
| !! | CAGGAGAAAAGTTGGCTTGT+TGG | - | chr5.1:78602523-78602542 | MS.gene062507:CDS | 45.0% |
| !! | GAATTTTGCTGGCTATGCCT+TGG | - | chr5.1:78603490-78603509 | MS.gene062507:intron | 45.0% |
| !! | TACTGTTTTTCATGCTGGGG+AGG | - | chr5.1:78602650-78602669 | MS.gene062507:CDS | 45.0% |
| AGAAAGGGAAGAAGCGGAAG+AGG | - | chr5.1:78604178-78604197 | MS.gene062507:CDS | 50.0% | |
| AGATATCCGGAAAAGGCAGG+AGG | - | chr5.1:78602376-78602395 | MS.gene062507:intron | 50.0% | |
| AGTAGGATGCTTGCAGCAAC+TGG | + | chr5.1:78602440-78602459 | None:intergenic | 50.0% | |
| ATCAACAGCTGCACCACAAG+CGG | + | chr5.1:78602735-78602754 | None:intergenic | 50.0% | |
| CACCGTAGAAATCGTCATCG+AGG | + | chr5.1:78602199-78602218 | None:intergenic | 50.0% | |
| CATCTCAGCATCAAGCATCC+CGG | + | chr5.1:78602704-78602723 | None:intergenic | 50.0% | |
| CATGGTCAGACCATGGTAGA+AGG | - | chr5.1:78603515-78603534 | MS.gene062507:intron | 50.0% | |
| CCAAATAGTTGAGTGCAGGC+GGG | - | chr5.1:78603798-78603817 | MS.gene062507:CDS | 50.0% | |
| CGAGAGACTTCATCAATGCG+CGG | - | chr5.1:78603921-78603940 | MS.gene062507:CDS | 50.0% | |
| CTCGATGACGATTTCTACGG+TGG | - | chr5.1:78602197-78602216 | MS.gene062507:CDS | 50.0% | |
| CTTTGAGTACTTGCAGGGTG+AGG | - | chr5.1:78603885-78603904 | MS.gene062507:CDS | 50.0% | |
| GAATTCACCCAAGTGTAGCC+AGG | + | chr5.1:78602986-78603005 | None:intergenic | 50.0% | |
| GCAGCTCTTTGAGTACTTGC+AGG | - | chr5.1:78603879-78603898 | MS.gene062507:CDS | 50.0% | |
| GGCAGGAGGATGATATCAGT+AGG | - | chr5.1:78602390-78602409 | MS.gene062507:intron | 50.0% | |
| GGTCTCTTACACTTGGGACA+CGG | + | chr5.1:78603415-78603434 | None:intergenic | 50.0% | |
| TAGACGGGTCTTCAGTTCTG+AGG | + | chr5.1:78603966-78603985 | None:intergenic | 50.0% | |
| TCAGACCATGGTAGAAGGAC+AGG | - | chr5.1:78603520-78603539 | MS.gene062507:intron | 50.0% | |
| ! | ATTGTGGCACAGTGTCGAAG+TGG | - | chr5.1:78603332-78603351 | MS.gene062507:intron | 50.0% |
| ! | GGGCTAGCAACCAATCTTCA+AGG | - | chr5.1:78603665-78603684 | MS.gene062507:CDS | 50.0% |
| AACCGCCTGTCCTTCTACCA+TGG | + | chr5.1:78603528-78603547 | None:intergenic | 55.0% | |
| AGATGTCCTGATCCCGCTTG+TGG | - | chr5.1:78602719-78602738 | MS.gene062507:CDS | 55.0% | |
| AGGATGCTTGCAGCAACTGG+TGG | + | chr5.1:78602437-78602456 | None:intergenic | 55.0% | |
| AGGGAAGAAGCGGAAGAGGA+AGG | - | chr5.1:78604182-78604201 | MS.gene062507:CDS | 55.0% | |
| CATGGTCTGACCATGCACCA+AGG | + | chr5.1:78603510-78603529 | None:intergenic | 55.0% | |
| CCCGCCTGCACTCAACTATT+TGG | + | chr5.1:78603801-78603820 | None:intergenic | 55.0% | |
| CTGTGCCACAATCCACTGGA+CGG | + | chr5.1:78603324-78603343 | None:intergenic | 55.0% | |
| GACACTGTGCCACAATCCAC+TGG | + | chr5.1:78603328-78603347 | None:intergenic | 55.0% | |
| GACCATGGTAGAAGGACAGG+CGG | - | chr5.1:78603523-78603542 | MS.gene062507:intron | 55.0% | |
| GCATGTTCACAACCAGGAGC+AGG | + | chr5.1:78603214-78603233 | None:intergenic | 55.0% | |
| GCTTGCAGCAACTGGTGGTA+TGG | + | chr5.1:78602432-78602451 | None:intergenic | 55.0% | |
| GGAAGAAGCGGAAGAGGAAG+GGG | - | chr5.1:78604184-78604203 | MS.gene062507:CDS | 55.0% | |
| GGGAAGAAGCGGAAGAGGAA+GGG | - | chr5.1:78604183-78604202 | MS.gene062507:CDS | 55.0% | |
| GGGAGCAGAAAGGGAAGAAG+CGG | - | chr5.1:78604172-78604191 | MS.gene062507:CDS | 55.0% | |
| TCAACAGCTGCACCACAAGC+GGG | + | chr5.1:78602734-78602753 | None:intergenic | 55.0% | |
| TGAAGATGCTCACCGTCCAG+TGG | - | chr5.1:78603309-78603328 | MS.gene062507:intron | 55.0% | |
| ! | CTTGGTGCATGGTCAGACCA+TGG | - | chr5.1:78603508-78603527 | MS.gene062507:intron | 55.0% |
| !! | AGTGCAGGCGGGTATTGAAG+TGG | - | chr5.1:78603809-78603828 | MS.gene062507:CDS | 55.0% |
| ACCAAGTGGTGTCCTGCTCC+TGG | - | chr5.1:78603199-78603218 | MS.gene062507:intron | 60.0% | |
| ACCAGGAGCAGGACACCACT+TGG | + | chr5.1:78603203-78603222 | None:intergenic | 60.0% | |
| ! | GCTGGCTATGCCTTGGTGCA+TGG | - | chr5.1:78603497-78603516 | MS.gene062507:intron | 60.0% |
| !! | GCTCACCGTCCAGTGGATTG+TGG | - | chr5.1:78603316-78603335 | MS.gene062507:intron | 60.0% |
| GCTGCACCACAAGCGGGATC+AGG | + | chr5.1:78602728-78602747 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 78602155 | 78604254 | 78602155 | ID=MS.gene062507 |
| chr5.1 | mRNA | 78602155 | 78604254 | 78602155 | ID=MS.gene062507.t1;Parent=MS.gene062507 |
| chr5.1 | exon | 78603565 | 78604254 | 78603565 | ID=MS.gene062507.t1.exon1;Parent=MS.gene062507.t1 |
| chr5.1 | CDS | 78603565 | 78604254 | 78603565 | ID=cds.MS.gene062507.t1;Parent=MS.gene062507.t1 |
| chr5.1 | exon | 78602508 | 78603210 | 78602508 | ID=MS.gene062507.t1.exon2;Parent=MS.gene062507.t1 |
| chr5.1 | CDS | 78602508 | 78603210 | 78602508 | ID=cds.MS.gene062507.t1;Parent=MS.gene062507.t1 |
| chr5.1 | exon | 78602155 | 78602393 | 78602155 | ID=MS.gene062507.t1.exon3;Parent=MS.gene062507.t1 |
| chr5.1 | CDS | 78602155 | 78602393 | 78602155 | ID=cds.MS.gene062507.t1;Parent=MS.gene062507.t1 |
| Gene Sequence |
| Protein sequence |
