Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062557.t1 | KEH30062.1 | 96.7 | 846 | 28 | 0 | 1 | 846 | 1 | 846 | 0.00E+00 | 1646.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062557.t1 | Q680Q4 | 61.1 | 843 | 311 | 12 | 1 | 839 | 1 | 830 | 2.3e-297 | 1022.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062557.t1 | A0A072UK34 | 96.7 | 846 | 28 | 0 | 1 | 846 | 1 | 846 | 0.0e+00 | 1646.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene062557.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057682 | MS.gene062557 | 0.832211 | 1.08E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062557.t1 | MTR_4g060510 | 98.700 | 846 | 11 | 0 | 1 | 846 | 1 | 846 | 0.0 | 1721 |
| MS.gene062557.t1 | MTR_4g060510 | 98.451 | 839 | 13 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1704 |
| MS.gene062557.t1 | MTR_4g060510 | 98.451 | 839 | 13 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1702 |
| MS.gene062557.t1 | MTR_2g093730 | 71.838 | 838 | 224 | 6 | 2 | 836 | 3 | 831 | 0.0 | 1196 |
| MS.gene062557.t1 | MTR_5g009920 | 30.556 | 108 | 72 | 1 | 351 | 458 | 302 | 406 | 4.85e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062557.t1 | AT5G60410 | 62.159 | 843 | 302 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1054 |
| MS.gene062557.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1052 |
| MS.gene062557.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1052 |
| MS.gene062557.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1052 |
| MS.gene062557.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1052 |
| MS.gene062557.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1051 |
Find 236 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTAATGAAGATGATTT+TGG | 0.169950 | 4.3:+41857206 | MS.gene062557:CDS |
| GAAAGTGAACGTCTGGATTT+AGG | 0.177524 | 4.3:+41856579 | MS.gene062557:CDS |
| TTGTCTCAGTTTCCAGAATA+TGG | 0.204078 | 4.3:+41852386 | MS.gene062557:intron |
| AACCATCTGCAATATCATTT+TGG | 0.221232 | 4.3:-41857106 | None:intergenic |
| TTTCCCAACAGCATTCTTCT+TGG | 0.230199 | 4.3:-41852410 | None:intergenic |
| CTGGTTGTGGCCAACTTTAC+AGG | 0.240074 | 4.3:-41853937 | None:intergenic |
| GCAAATACTTTGGCTGATTC+TGG | 0.265030 | 4.3:+41857701 | MS.gene062557:CDS |
| CGTCTGGATTTAGGGATTCT+TGG | 0.266687 | 4.3:+41856588 | MS.gene062557:CDS |
| TTTCAATCGCATCACTTCTA+TGG | 0.279502 | 4.3:+41856406 | MS.gene062557:CDS |
| CCAGATCCCAAAGCAGTTTC+GGG | 0.280923 | 4.3:-41857380 | None:intergenic |
| ACCTTGCTCATCTGAGAGTA+TGG | 0.290977 | 4.3:-41851781 | None:intergenic |
| GCCAGATCCCAAAGCAGTTT+CGG | 0.293735 | 4.3:-41857381 | None:intergenic |
| ACTCCTTTGGAATTAAGTTT+AGG | 0.304656 | 4.3:-41855909 | None:intergenic |
| GGTGATGCTTCCACTCAAAA+TGG | 0.305594 | 4.3:+41857638 | MS.gene062557:CDS |
| ATTCTTCTTGGCCCATATTC+TGG | 0.317429 | 4.3:-41852398 | None:intergenic |
| GAAGTGATGCGATTGAAATA+AGG | 0.318290 | 4.3:-41856401 | None:intergenic |
| GAAAGAGCAGGTGGCAAAAT+TGG | 0.320071 | 4.3:+41852429 | MS.gene062557:CDS |
| CTGGTTTAAAACTTGGCATT+AGG | 0.321743 | 4.3:+41856718 | MS.gene062557:CDS |
| GGAGGAATCGCAATGGGAAT+TGG | 0.324383 | 4.3:+41856739 | MS.gene062557:CDS |
| ACTCAGGAAAATGCAGATAT+CGG | 0.327194 | 4.3:+41852693 | MS.gene062557:intron |
| TATACAGACCTAGCAGTTAA+TGG | 0.329641 | 4.3:+41854679 | MS.gene062557:CDS |
| CCCGAAACTGCTTTGGGATC+TGG | 0.333745 | 4.3:+41857380 | MS.gene062557:CDS |
| AAGAACATTTATGAATTAGA+AGG | 0.340056 | 4.3:-41857740 | None:intergenic |
| TGCTGATAGCGACAGTGATT+TGG | 0.342121 | 4.3:+41856005 | MS.gene062557:CDS |
| CACGCGTCTGTCGTTGTGTT+GGG | 0.342273 | 4.3:+41855962 | MS.gene062557:CDS |
| ATTCCAAAATCATCTTCATT+AGG | 0.342360 | 4.3:-41857209 | None:intergenic |
| CTCGGTGGAAGTTCATGCTT+GGG | 0.346082 | 4.3:+41857179 | MS.gene062557:CDS |
| GTCATTGCCTTCTGCATCTC+AGG | 0.353133 | 4.3:+41857244 | MS.gene062557:CDS |
| ATTGGCTCCCGAAACTGCTT+TGG | 0.354081 | 4.3:+41857373 | MS.gene062557:CDS |
| TGAACGACAAGGTTCCATTC+AGG | 0.356491 | 4.3:+41854641 | MS.gene062557:CDS |
| GACAACCCATTGGCATTTGC+TGG | 0.356540 | 4.3:+41857464 | MS.gene062557:CDS |
| ATCACCATCCCGACCACTTT+CGG | 0.356985 | 4.3:-41856865 | None:intergenic |
| AAAGTGAACGTCTGGATTTA+GGG | 0.357301 | 4.3:+41856580 | MS.gene062557:CDS |
| AGTTCACAATAAAATTTATC+AGG | 0.361374 | 4.3:-41853165 | None:intergenic |
| GGCCAATGGCATCTTCCTAA+TGG | 0.367292 | 4.3:+41856609 | MS.gene062557:CDS |
| AGTGTTAACCAGGGTGGTGG+TGG | 0.369509 | 4.3:+41856894 | MS.gene062557:CDS |
| TTGGCTCCCGAAACTGCTTT+GGG | 0.370189 | 4.3:+41857374 | MS.gene062557:CDS |
| AGTGATGAGGTGCAATTAAT+AGG | 0.378729 | 4.3:-41857338 | None:intergenic |
| CAGTATAAGCCTTCGTTGTC+CGG | 0.381422 | 4.3:+41856047 | MS.gene062557:CDS |
| CATTGTCTCTGGATGGGACT+TGG | 0.386225 | 4.3:-41857676 | None:intergenic |
| ATGCCTTCCATAGGTTTCTC+TGG | 0.386479 | 4.3:-41853132 | None:intergenic |
| TGTGGAAGTACATTGGAAAC+AGG | 0.389365 | 4.3:+41852838 | MS.gene062557:CDS |
| AGTATTTGCGCCATTGTCTC+TGG | 0.389636 | 4.3:-41857687 | None:intergenic |
| GACGACTCAGCTGGTCTTGT+GGG | 0.390350 | 4.3:-41857515 | None:intergenic |
| CTTACTCTCGGAGGTGGTGC+TGG | 0.391540 | 4.3:+41857605 | MS.gene062557:CDS |
| GTTCTCTCCACGCACTGCAC+TGG | 0.391843 | 4.3:-41854464 | None:intergenic |
| CAGCACCACCTCCGAGAGTA+AGG | 0.392682 | 4.3:-41857604 | None:intergenic |
| AACACTGAAGCAAGTAAAAC+AGG | 0.397029 | 4.3:+41856674 | MS.gene062557:CDS |
| GGTCTATTAGTTGTTCGAAT+AGG | 0.398032 | 4.3:-41854854 | None:intergenic |
| ATGGTGTTTCCACTGAAGAT+TGG | 0.399962 | 4.3:+41857576 | MS.gene062557:CDS |
| CAATAAAATTTATCAGGAAC+TGG | 0.400321 | 4.3:-41853159 | None:intergenic |
| AATGCAAGGTTTGAATCTTC+CGG | 0.401374 | 4.3:-41856180 | None:intergenic |
| TGTCTCAGTTTCCAGAATAT+GGG | 0.403486 | 4.3:+41852387 | MS.gene062557:intron |
| CTGCATCAGAACCGAACAAT+TGG | 0.403934 | 4.3:-41857280 | None:intergenic |
| AGATTCTGATCTTCAGTGTA+TGG | 0.405129 | 4.3:-41857158 | None:intergenic |
| GAGACAACAAACACCTCTTC+TGG | 0.405142 | 4.3:+41856777 | MS.gene062557:CDS |
| TGATGGCTCTTGGCGTGTTA+AGG | 0.415872 | 4.3:+41856548 | MS.gene062557:CDS |
| TCAGTTAGGACTTTCAAAAC+AGG | 0.417332 | 4.3:+41851521 | MS.gene062557:CDS |
| GAAGAGGTGTTTGTTGTCTC+GGG | 0.417393 | 4.3:-41856774 | None:intergenic |
| CAGAAGGCGCAGTTTGCAAC+AGG | 0.417817 | 4.3:+41855131 | MS.gene062557:CDS |
| AGAAGAGGTGTTTGTTGTCT+CGG | 0.418486 | 4.3:-41856775 | None:intergenic |
| AAGTGATGCGATTGAAATAA+GGG | 0.420028 | 4.3:-41856400 | None:intergenic |
| ATTGGAATAACAACTTGTTC+AGG | 0.423238 | 4.3:-41856828 | None:intergenic |
| TGAAGAAGACAATGACATAT+TGG | 0.426237 | 4.3:+41857055 | MS.gene062557:CDS |
| TCCCTTTGTACTTCTACTGC+TGG | 0.427026 | 4.3:+41856633 | MS.gene062557:CDS |
| TGGTGGTTGTTATTTGCAAT+TGG | 0.428837 | 4.3:-41857086 | None:intergenic |
| GGCTCACCGTCAGACTCCTT+TGG | 0.429043 | 4.3:-41855922 | None:intergenic |
| GGTCCAGGATTCCAATTGTT+CGG | 0.430991 | 4.3:+41857269 | MS.gene062557:CDS |
| TCGGAGCCACTGCTGCTCAT+TGG | 0.433629 | 4.3:-41856846 | None:intergenic |
| TTCTCTCCACGCACTGCACT+GGG | 0.434383 | 4.3:-41854463 | None:intergenic |
| GATCAAGCAAATGTCTCTAA+TGG | 0.441265 | 4.3:+41857557 | MS.gene062557:CDS |
| AAGGATGTGCTGACTCAGTT+AGG | 0.444292 | 4.3:+41851507 | MS.gene062557:CDS |
| TCCTTTGTTACCTGTAAAGT+TGG | 0.445895 | 4.3:+41853927 | MS.gene062557:CDS |
| GAGGAATCGCAATGGGAATT+GGG | 0.446679 | 4.3:+41856740 | MS.gene062557:CDS |
| GGTTCAAGAATGAAGATTGC+CGG | 0.447230 | 4.3:+41856161 | MS.gene062557:CDS |
| GCGAGCATCACATACTGTTA+AGG | 0.451776 | 4.3:-41855082 | None:intergenic |
| CTCTTACAAGATTCCTCTGC+TGG | 0.453644 | 4.3:+41857407 | MS.gene062557:CDS |
| TGCTGACTTAAACGGTGGTT+TGG | 0.454513 | 4.3:+41857439 | MS.gene062557:CDS |
| GGACCTGCTGGTTTAAAACT+TGG | 0.454520 | 4.3:+41856711 | MS.gene062557:CDS |
| TCTGCATCTCAGGCTGGTCC+AGG | 0.454585 | 4.3:+41857254 | MS.gene062557:CDS |
| TTGCCTTCTGCATCTCAGGC+TGG | 0.454882 | 4.3:+41857248 | MS.gene062557:CDS |
| GAAGTACAAAGGGATCCATT+AGG | 0.456957 | 4.3:-41856624 | None:intergenic |
| CGGACAGATGCTGACTTAAA+CGG | 0.458317 | 4.3:+41857431 | MS.gene062557:CDS |
| GTGGAAATGGATTTGGTAGC+CGG | 0.462405 | 4.3:+41850199 | None:intergenic |
| CACATCTGCTCAGGTGGGTG+GGG | 0.465487 | 4.3:+41857007 | MS.gene062557:CDS |
| ATGCAGAAGGCAATGACCAC+AGG | 0.465646 | 4.3:-41857238 | None:intergenic |
| TCACCCATCAGTCGGAATAC+TGG | 0.470078 | 4.3:-41853956 | None:intergenic |
| AGGTTCCATTCAGGATTCAA+TGG | 0.470932 | 4.3:+41854650 | MS.gene062557:CDS |
| TGTAGTAGATTGAATTTGAA+AGG | 0.471804 | 4.3:-41852794 | None:intergenic |
| CAGTGGCTCCGAAAGTGGTC+GGG | 0.478789 | 4.3:+41856857 | MS.gene062557:CDS |
| TGCAGAGGCCTCTGATGCAT+TGG | 0.480231 | 4.3:+41857298 | MS.gene062557:CDS |
| AGACCTGGTTCTCAGTTGCT+TGG | 0.480715 | 4.3:+41854872 | MS.gene062557:CDS |
| AGACAATGGCGCAAATACTT+TGG | 0.481858 | 4.3:+41857691 | MS.gene062557:CDS |
| GGTTACTCCATGCCACCTCC+TGG | 0.482671 | 4.3:+41857125 | MS.gene062557:CDS |
| CGTGCAAGAGCATCTTCAAA+AGG | 0.484446 | 4.3:-41855943 | None:intergenic |
| AAAGAGTGAAAGTGAACGTC+TGG | 0.487302 | 4.3:+41856572 | MS.gene062557:CDS |
| GCACGCGTCTGTCGTTGTGT+TGG | 0.491160 | 4.3:+41855961 | MS.gene062557:CDS |
| CTCAGGAAAATGCAGATATC+GGG | 0.492701 | 4.3:+41852694 | MS.gene062557:intron |
| AATTGGTGGATGACACATAT+AGG | 0.496338 | 4.3:+41852446 | MS.gene062557:CDS |
| AAAACAAGAATTTGATGTTG+AGG | 0.498260 | 4.3:+41854523 | MS.gene062557:CDS |
| AGGTGAAGCCTGATGGCTCT+TGG | 0.500229 | 4.3:+41856538 | MS.gene062557:CDS |
| TGATCTAGCATCAAAGGGTC+AGG | 0.502689 | 4.3:+41852723 | MS.gene062557:CDS |
| GTGTATGGGTCAACAATTCC+AGG | 0.503406 | 4.3:-41857143 | None:intergenic |
| TTTGCGCCATTGTCTCTGGA+TGG | 0.506095 | 4.3:-41857683 | None:intergenic |
| ATTGATTATTCTACTACCAA+TGG | 0.508427 | 4.3:+41856921 | MS.gene062557:CDS |
| AACTGATGTGTTGCCACACT+TGG | 0.509642 | 4.3:-41853098 | None:intergenic |
| GGAAACAGGGGATTTGATCA+AGG | 0.511350 | 4.3:+41852852 | MS.gene062557:CDS |
| GAACCGAACAATTGGAATCC+TGG | 0.511458 | 4.3:-41857272 | None:intergenic |
| GTGTTAACCAGGGTGGTGGT+GGG | 0.511734 | 4.3:+41856895 | MS.gene062557:CDS |
| AGCCACTGATCTAGCATCAA+AGG | 0.512610 | 4.3:+41852717 | MS.gene062557:CDS |
| AATAATGTTGATTTAGCTCG+TGG | 0.515010 | 4.3:+41856969 | MS.gene062557:CDS |
| TCTCGGTGGAAGTTCATGCT+TGG | 0.515187 | 4.3:+41857178 | MS.gene062557:CDS |
| CATTTATGAATTAGAAGGGT+CGG | 0.519992 | 4.3:-41857735 | None:intergenic |
| TACTACCAATGGAATTGAGA+TGG | 0.520220 | 4.3:+41856932 | MS.gene062557:CDS |
| GGAGCTAACGGTCGTGATGA+TGG | 0.522397 | 4.3:+41854893 | MS.gene062557:CDS |
| TTGCGCCATTGTCTCTGGAT+GGG | 0.523797 | 4.3:-41857682 | None:intergenic |
| TTAACACGCCAAGAGCCATC+AGG | 0.524906 | 4.3:-41856546 | None:intergenic |
| ACACATCTGCTCAGGTGGGT+GGG | 0.527629 | 4.3:+41857006 | MS.gene062557:CDS |
| TAAAATTTATCAGGAACTGG+TGG | 0.527907 | 4.3:-41853156 | None:intergenic |
| TCTCAGTTGCTTGGAGCTAA+CGG | 0.528194 | 4.3:+41854881 | MS.gene062557:CDS |
| GTTTAAAACTTGGCATTAGG+AGG | 0.528847 | 4.3:+41856721 | MS.gene062557:CDS |
| TCCAGCAGTAGAAGTACAAA+GGG | 0.531371 | 4.3:-41856634 | None:intergenic |
| AGCAGCAGTGGCTCCGAAAG+TGG | 0.531558 | 4.3:+41856852 | MS.gene062557:CDS |
| AACAATTCCAGGAGGTGGCA+TGG | 0.531645 | 4.3:-41857132 | None:intergenic |
| GCATTAGGAGGAATCGCAAT+GGG | 0.531717 | 4.3:+41856733 | MS.gene062557:CDS |
| TGAAGATGTTACAGAGGTTG+AGG | 0.533950 | 4.3:+41856518 | MS.gene062557:CDS |
| ACCACCACCCTGGTTAACAC+TGG | 0.535166 | 4.3:-41856892 | None:intergenic |
| ATTCAAACCTTGCATTCACA+TGG | 0.535289 | 4.3:+41856187 | MS.gene062557:CDS |
| TGAAAGTACCATTAACTGCT+AGG | 0.535333 | 4.3:-41854687 | None:intergenic |
| AACACATCTGCTCAGGTGGG+TGG | 0.535405 | 4.3:+41857005 | MS.gene062557:CDS |
| CATCTCCAGCAAATGCCAAT+GGG | 0.537152 | 4.3:-41857469 | None:intergenic |
| ATTTAGGGATTCTTGGCCAA+TGG | 0.537251 | 4.3:+41856595 | MS.gene062557:CDS |
| TTCAAAACAGGGAAAGAAGC+AGG | 0.537787 | 4.3:+41851533 | MS.gene062557:CDS |
| TATTATTCCAGAGAAACCTA+TGG | 0.538683 | 4.3:+41853125 | MS.gene062557:CDS |
| GCATAACACATCTGCTCAGG+TGG | 0.539010 | 4.3:+41857001 | MS.gene062557:CDS |
| AATGAATCAACGGTCAAGAA+AGG | 0.539654 | 4.3:+41856238 | MS.gene062557:CDS |
| GGATTTGGTAGCCGGTATCA+AGG | 0.542036 | 4.3:+41850207 | MS.gene062557:CDS |
| ATCAGTCGGAATACTGGTTG+TGG | 0.542117 | 4.3:-41853950 | None:intergenic |
| TGATGATCCCAGTGTTAACC+AGG | 0.542672 | 4.3:+41856884 | MS.gene062557:CDS |
| GCTCCAAGCAACTGAGAACC+AGG | 0.545103 | 4.3:-41854875 | None:intergenic |
| GGTGGTGCTGGCGGTAGTAA+TGG | 0.547848 | 4.3:+41857617 | MS.gene062557:CDS |
| TACGCATAACACATCTGCTC+AGG | 0.550755 | 4.3:+41856998 | MS.gene062557:CDS |
| TAGCGACAGTGATTTGGAAG+TGG | 0.551318 | 4.3:+41856011 | MS.gene062557:CDS |
| TGGTTGTTATTTGCAATTGG+AGG | 0.553691 | 4.3:-41857083 | None:intergenic |
| ACAACCAGTATTCCGACTGA+TGG | 0.554333 | 4.3:+41853952 | MS.gene062557:CDS |
| ATCACTGAACGGTTATGCAT+TGG | 0.555537 | 4.3:+41857355 | MS.gene062557:CDS |
| ACTGGTGGGATGCCTTCCAT+AGG | 0.557028 | 4.3:-41853141 | None:intergenic |
| TCATCTCCAGCAAATGCCAA+TGG | 0.557087 | 4.3:-41857470 | None:intergenic |
| TGGGCCAAGAAGAATGCTGT+TGG | 0.557207 | 4.3:+41852406 | MS.gene062557:CDS |
| AGAACATTTATGAATTAGAA+GGG | 0.557697 | 4.3:-41857739 | None:intergenic |
| GCCACTGATCTAGCATCAAA+GGG | 0.557914 | 4.3:+41852718 | MS.gene062557:CDS |
| CCCAGTGTTAACCAGGGTGG+TGG | 0.558647 | 4.3:+41856891 | MS.gene062557:CDS |
| GATCCTAAACTTAATTCCAA+AGG | 0.559168 | 4.3:+41855906 | MS.gene062557:intron |
| GCAGTGGCTCCGAAAGTGGT+CGG | 0.559727 | 4.3:+41856856 | MS.gene062557:CDS |
| GGGCCAAGAAGAATGCTGTT+GGG | 0.560934 | 4.3:+41852407 | MS.gene062557:CDS |
| TTCTGTAGGATCTCGTCGAT+CGG | 0.560941 | 4.3:+41851751 | MS.gene062557:intron |
| CACCAAAATGATATTGCAGA+TGG | 0.562331 | 4.3:+41857104 | MS.gene062557:CDS |
| CCACCACCCTGGTTAACACT+GGG | 0.563823 | 4.3:-41856891 | None:intergenic |
| ACAGATGCTGACTTAAACGG+TGG | 0.564719 | 4.3:+41857434 | MS.gene062557:CDS |
| TTCTGGTCATATATTAAGAG+AGG | 0.564933 | 4.3:+41856794 | MS.gene062557:CDS |
| AGAATCCATCTCAATTCCAT+TGG | 0.565368 | 4.3:-41856937 | None:intergenic |
| GGGTCAACAATTCCAGGAGG+TGG | 0.565780 | 4.3:-41857137 | None:intergenic |
| ACGCGTCTGTCGTTGTGTTG+GGG | 0.565862 | 4.3:+41855963 | MS.gene062557:CDS |
| AGACGACTCAGCTGGTCTTG+TGG | 0.566685 | 4.3:-41857516 | None:intergenic |
| GGCTCCGAAAGTGGTCGGGA+TGG | 0.567316 | 4.3:+41856861 | MS.gene062557:CDS |
| AGAGCAGGTGGCAAAATTGG+TGG | 0.568651 | 4.3:+41852432 | MS.gene062557:CDS |
| GATTCTGATCTTCAGTGTAT+GGG | 0.568709 | 4.3:-41857157 | None:intergenic |
| ATGATGATATACCTTGATAC+CGG | 0.569499 | 4.3:-41850218 | None:intergenic |
| TGTGGCCATTGAATCCTGAA+TGG | 0.572530 | 4.3:-41854655 | None:intergenic |
| CTGTCTCTGTGGAAGTACAT+TGG | 0.572912 | 4.3:+41852831 | MS.gene062557:CDS |
| CTCCACGCACTGCACTGGGT+TGG | 0.574223 | 4.3:-41854459 | None:intergenic |
| CTCCAGCAGTAGAAGTACAA+AGG | 0.578719 | 4.3:-41856635 | None:intergenic |
| ACCCTTTGATGCTAGATCAG+TGG | 0.579842 | 4.3:-41852719 | None:intergenic |
| TTTCCGTATAAAAGAGCTCA+AGG | 0.582643 | 4.3:+41851488 | MS.gene062557:CDS |
| TTCTGCATAGACGACTCAGC+TGG | 0.582789 | 4.3:-41857524 | None:intergenic |
| TACACTGAAGATCAGAATCT+CGG | 0.583134 | 4.3:+41857161 | MS.gene062557:CDS |
| TGGTTTGGTTGACAACCCAT+TGG | 0.583485 | 4.3:+41857454 | MS.gene062557:CDS |
| CAAATGAACCAATGCATCAG+AGG | 0.583738 | 4.3:-41857306 | None:intergenic |
| TAGGGGTTCGAATTGTCAGA+AGG | 0.586441 | 4.3:+41855115 | MS.gene062557:CDS |
| ATCCATTAGGAAGATGCCAT+TGG | 0.587077 | 4.3:-41856611 | None:intergenic |
| AAACAACCCATGTGAATGCA+AGG | 0.588755 | 4.3:-41856194 | None:intergenic |
| GTCAGATAGTAGTAATGTGA+AGG | 0.588763 | 4.3:+41852750 | MS.gene062557:CDS |
| GAGGTTGAGGTGAAGCCTGA+TGG | 0.589171 | 4.3:+41856531 | MS.gene062557:CDS |
| TCTTAATATATGACCAGAAG+AGG | 0.589965 | 4.3:-41856790 | None:intergenic |
| TATTACCATTTATAGATGAG+TGG | 0.593609 | 4.3:+41856140 | MS.gene062557:intron |
| GATTGGACATCCCTTACTCT+CGG | 0.594442 | 4.3:+41857593 | MS.gene062557:CDS |
| GAATGCTGTTGGGAAAGAGC+AGG | 0.595394 | 4.3:+41852417 | MS.gene062557:CDS |
| TGCATAACCGTTCAGTGATG+AGG | 0.596581 | 4.3:-41857351 | None:intergenic |
| TCAACTCACAAGAGCAGACA+AGG | 0.599982 | 4.3:+41854490 | MS.gene062557:CDS |
| GTTATTCCAATGAGCAGCAG+TGG | 0.601585 | 4.3:+41856840 | MS.gene062557:CDS |
| ATTGTTCGGTTCTGATGCAG+AGG | 0.604658 | 4.3:+41857283 | MS.gene062557:CDS |
| AAAATTTATCAGGAACTGGT+GGG | 0.607402 | 4.3:-41853155 | None:intergenic |
| AAGGGATGTCCAATCTTCAG+TGG | 0.608756 | 4.3:-41857585 | None:intergenic |
| CAACCAGTATTCCGACTGAT+GGG | 0.609101 | 4.3:+41853953 | MS.gene062557:CDS |
| ATCACGCCGCATACAAAAGA+CGG | 0.610322 | 4.3:+41855045 | MS.gene062557:CDS |
| AGCATCTGTCCGTCCAGCAG+AGG | 0.610516 | 4.3:-41857420 | None:intergenic |
| CAGTTAGGACTTTCAAAACA+GGG | 0.613916 | 4.3:+41851522 | MS.gene062557:CDS |
| ACTCTCGGAGGTGGTGCTGG+CGG | 0.614564 | 4.3:+41857608 | MS.gene062557:CDS |
| GGCATTAGGAGGAATCGCAA+TGG | 0.614693 | 4.3:+41856732 | MS.gene062557:CDS |
| ACATCCCTTACTCTCGGAGG+TGG | 0.615368 | 4.3:+41857599 | MS.gene062557:CDS |
| CGCGTCTGTCGTTGTGTTGG+GGG | 0.617331 | 4.3:+41855964 | MS.gene062557:CDS |
| TGCTGTTGGGAAAGAGCAGG+TGG | 0.617341 | 4.3:+41852420 | MS.gene062557:CDS |
| TACAAGATTCCTCTGCTGGA+CGG | 0.618020 | 4.3:+41857411 | MS.gene062557:CDS |
| TTCAAACCTTGCATTCACAT+GGG | 0.620953 | 4.3:+41856188 | MS.gene062557:CDS |
| GTGGAAGTACATTGGAAACA+GGG | 0.621176 | 4.3:+41852839 | MS.gene062557:CDS |
| TGCAGAAGGCAATGACCACA+GGG | 0.622669 | 4.3:-41857237 | None:intergenic |
| ACAAAGATTCGCTGTCTCTG+TGG | 0.626008 | 4.3:+41852820 | MS.gene062557:CDS |
| CAATATGCCCACCACCACCC+TGG | 0.626286 | 4.3:-41856902 | None:intergenic |
| TCGGTGGAAGTTCATGCTTG+GGG | 0.626592 | 4.3:+41857180 | MS.gene062557:CDS |
| TACCAACCCAGTGCAGTGCG+TGG | 0.627424 | 4.3:+41854457 | MS.gene062557:CDS |
| AGCACCACCTCCGAGAGTAA+GGG | 0.628927 | 4.3:-41857603 | None:intergenic |
| TTAATTCCAAAGGAGTCTGA+CGG | 0.634359 | 4.3:+41855916 | MS.gene062557:CDS |
| CAAGTCCCATCCAGAGACAA+TGG | 0.637497 | 4.3:+41857677 | MS.gene062557:CDS |
| GGACCAGCCTGAGATGCAGA+AGG | 0.640187 | 4.3:-41857251 | None:intergenic |
| CCATGTACTCACCCATCAGT+CGG | 0.640779 | 4.3:-41853964 | None:intergenic |
| GCCAACTTTACAGGTAACAA+AGG | 0.641343 | 4.3:-41853928 | None:intergenic |
| AATTGCACCTCATCACTGAA+CGG | 0.645687 | 4.3:+41857344 | MS.gene062557:CDS |
| ATTCCAGAGAAACCTATGGA+AGG | 0.646238 | 4.3:+41853129 | MS.gene062557:CDS |
| CTGAAGCAAGTAAAACAGGA+AGG | 0.648396 | 4.3:+41856678 | MS.gene062557:CDS |
| TCCATACTCTCAGATGAGCA+AGG | 0.650138 | 4.3:+41851780 | MS.gene062557:CDS |
| GTGTATGCTTCTGAACGACA+AGG | 0.650450 | 4.3:+41854630 | MS.gene062557:CDS |
| TTGCGGTGAAGATGTTACAG+AGG | 0.656546 | 4.3:+41856512 | MS.gene062557:CDS |
| ACGACTCAGCTGGTCTTGTG+GGG | 0.660023 | 4.3:-41857514 | None:intergenic |
| CATAACACATCTGCTCAGGT+GGG | 0.660429 | 4.3:+41857002 | MS.gene062557:CDS |
| ATTCGAACAACTAATAGACC+TGG | 0.670126 | 4.3:+41854857 | MS.gene062557:CDS |
| CTGGTACAGATGATTAATTG+CGG | 0.671508 | 4.3:+41856495 | MS.gene062557:intron |
| CACAAGAGCAGACAAGGACA+TGG | 0.672436 | 4.3:+41854496 | MS.gene062557:CDS |
| TGGAAGTACATTGGAAACAG+GGG | 0.683506 | 4.3:+41852840 | MS.gene062557:CDS |
| AAAGCCTTACCGGACAACGA+AGG | 0.691607 | 4.3:-41856056 | None:intergenic |
| ACTGAAGATCAGAATCTCGG+TGG | 0.691772 | 4.3:+41857164 | MS.gene062557:CDS |
| ATGATGCAAGATGCCAAGTG+TGG | 0.722474 | 4.3:+41853085 | MS.gene062557:CDS |
| ACTGCTAGGTCTGTATACTG+TGG | 0.722592 | 4.3:-41854673 | None:intergenic |
| TGGACATCCCTTACTCTCGG+AGG | 0.740031 | 4.3:+41857596 | MS.gene062557:CDS |
| GATGATCCCAGTGTTAACCA+GGG | 0.753201 | 4.3:+41856885 | MS.gene062557:CDS |
| TATGGGTCAACAATTCCAGG+AGG | 0.765207 | 4.3:-41857140 | None:intergenic |
| GATCCCAGTGTTAACCAGGG+TGG | 0.772459 | 4.3:+41856888 | MS.gene062557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 41850205 | 41857754 | 41850205 | ID=MS.gene062557 |
| chr4.3 | mRNA | 41850205 | 41857754 | 41850205 | ID=MS.gene062557.t1;Parent=MS.gene062557 |
| chr4.3 | exon | 41850205 | 41850228 | 41850205 | ID=MS.gene062557.t1.exon1;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41850205 | 41850228 | 41850205 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41851474 | 41851554 | 41851474 | ID=MS.gene062557.t1.exon2;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41851474 | 41851554 | 41851474 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41851759 | 41851801 | 41851759 | ID=MS.gene062557.t1.exon3;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41851759 | 41851801 | 41851759 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41852395 | 41852467 | 41852395 | ID=MS.gene062557.t1.exon4;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41852395 | 41852467 | 41852395 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41852699 | 41852873 | 41852699 | ID=MS.gene062557.t1.exon5;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41852699 | 41852873 | 41852699 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41853081 | 41853211 | 41853081 | ID=MS.gene062557.t1.exon6;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41853081 | 41853211 | 41853081 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41853906 | 41853974 | 41853906 | ID=MS.gene062557.t1.exon7;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41853906 | 41853974 | 41853906 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41854457 | 41854544 | 41854457 | ID=MS.gene062557.t1.exon8;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41854457 | 41854544 | 41854457 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41854625 | 41854700 | 41854625 | ID=MS.gene062557.t1.exon9;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41854625 | 41854700 | 41854625 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41854849 | 41854922 | 41854849 | ID=MS.gene062557.t1.exon10;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41854849 | 41854922 | 41854849 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41855045 | 41855152 | 41855045 | ID=MS.gene062557.t1.exon11;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41855045 | 41855152 | 41855045 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41855907 | 41856068 | 41855907 | ID=MS.gene062557.t1.exon12;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41855907 | 41856068 | 41855907 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41856155 | 41856259 | 41856155 | ID=MS.gene062557.t1.exon13;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41856155 | 41856259 | 41856155 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41856347 | 41856427 | 41856347 | ID=MS.gene062557.t1.exon14;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41856347 | 41856427 | 41856347 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| chr4.3 | exon | 41856504 | 41857754 | 41856504 | ID=MS.gene062557.t1.exon15;Parent=MS.gene062557.t1 |
| chr4.3 | CDS | 41856504 | 41857754 | 41856504 | ID=cds.MS.gene062557.t1;Parent=MS.gene062557.t1 |
| Gene Sequence |
| Protein sequence |
