Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062566.t1 | XP_003606412.1 | 90.4 | 291 | 28 | 0 | 1 | 291 | 1 | 291 | 7.90E-87 | 330.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062566.t1 | Q8LEE9 | 55.2 | 145 | 63 | 2 | 78 | 221 | 44 | 187 | 3.5e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062566.t1 | G7JPF4 | 90.4 | 291 | 28 | 0 | 1 | 291 | 1 | 291 | 5.7e-87 | 330.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene062566 | 0.916132 | 2.57E-85 | -1.69E-46 |
| MS.gene058848 | MS.gene062566 | 0.892394 | 1.65E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062566.t1 | MTR_4g059840 | 92.388 | 289 | 22 | 0 | 1 | 289 | 1 | 289 | 0.0 | 501 |
| MS.gene062566.t1 | MTR_4g059790 | 94.845 | 291 | 15 | 0 | 1 | 291 | 1 | 291 | 8.46e-175 | 484 |
| MS.gene062566.t1 | MTR_4g053380 | 80.623 | 289 | 50 | 4 | 1 | 283 | 2 | 290 | 1.29e-145 | 410 |
| MS.gene062566.t1 | MTR_2g093970 | 57.746 | 284 | 105 | 7 | 9 | 283 | 8 | 285 | 1.40e-96 | 286 |
| MS.gene062566.t1 | MTR_8g087450 | 57.143 | 210 | 77 | 3 | 22 | 220 | 17 | 224 | 3.00e-75 | 232 |
| MS.gene062566.t1 | MTR_2g017970 | 55.455 | 220 | 88 | 3 | 73 | 291 | 68 | 278 | 1.70e-74 | 229 |
| MS.gene062566.t1 | MTR_2g017960 | 58.000 | 200 | 75 | 2 | 73 | 272 | 68 | 258 | 2.11e-72 | 224 |
| MS.gene062566.t1 | MTR_2g093980 | 45.051 | 293 | 140 | 6 | 5 | 289 | 3 | 282 | 1.32e-71 | 222 |
| MS.gene062566.t1 | MTR_2g017950 | 44.089 | 313 | 133 | 11 | 1 | 289 | 1 | 295 | 8.23e-69 | 216 |
| MS.gene062566.t1 | MTR_4g059780 | 55.838 | 197 | 78 | 3 | 30 | 222 | 48 | 239 | 8.54e-67 | 211 |
| MS.gene062566.t1 | MTR_8g087460 | 51.883 | 239 | 89 | 8 | 5 | 220 | 7 | 242 | 9.96e-67 | 211 |
| MS.gene062566.t1 | MTR_8g087470 | 52.301 | 239 | 88 | 8 | 5 | 220 | 7 | 242 | 1.71e-66 | 210 |
| MS.gene062566.t1 | MTR_4g059720 | 50.698 | 215 | 74 | 5 | 11 | 225 | 10 | 192 | 6.28e-59 | 189 |
| MS.gene062566.t1 | MTR_2g093990 | 44.811 | 212 | 111 | 4 | 73 | 283 | 41 | 247 | 4.93e-51 | 168 |
| MS.gene062566.t1 | MTR_7g101080 | 44.937 | 158 | 85 | 2 | 65 | 221 | 32 | 188 | 9.60e-39 | 137 |
| MS.gene062566.t1 | MTR_2g090765 | 39.394 | 198 | 112 | 2 | 66 | 256 | 31 | 227 | 9.79e-31 | 115 |
| MS.gene062566.t1 | MTR_7g075453 | 32.222 | 180 | 117 | 2 | 66 | 245 | 177 | 351 | 5.18e-19 | 86.7 |
| MS.gene062566.t1 | MTR_5g098060 | 29.778 | 225 | 142 | 7 | 72 | 291 | 47 | 260 | 1.89e-16 | 77.8 |
| MS.gene062566.t1 | MTR_5g098420 | 29.442 | 197 | 124 | 7 | 40 | 235 | 167 | 349 | 9.74e-13 | 68.2 |
| MS.gene062566.t1 | MTR_2g437700 | 30.519 | 154 | 100 | 4 | 72 | 221 | 194 | 344 | 6.69e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062566.t1 | AT5G60490 | 54.000 | 150 | 67 | 2 | 73 | 221 | 39 | 187 | 2.40e-47 | 159 |
| MS.gene062566.t1 | AT5G03170 | 47.305 | 167 | 87 | 1 | 66 | 231 | 29 | 195 | 2.73e-47 | 159 |
| MS.gene062566.t1 | AT5G44130 | 36.816 | 201 | 113 | 6 | 72 | 268 | 35 | 225 | 1.27e-28 | 110 |
| MS.gene062566.t1 | AT2G20520 | 35.714 | 238 | 131 | 7 | 52 | 286 | 19 | 237 | 3.42e-28 | 109 |
| MS.gene062566.t1 | AT1G03870 | 33.636 | 220 | 134 | 6 | 72 | 289 | 38 | 247 | 5.41e-26 | 103 |
| MS.gene062566.t1 | AT3G60900 | 29.121 | 182 | 124 | 2 | 66 | 247 | 183 | 359 | 2.86e-16 | 79.0 |
| MS.gene062566.t1 | AT3G46550 | 31.183 | 186 | 114 | 7 | 58 | 233 | 193 | 374 | 3.26e-14 | 72.8 |
| MS.gene062566.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.97e-13 | 67.8 |
| MS.gene062566.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.97e-13 | 67.8 |
Find 83 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4.3:-42139504 | None:intergenic |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.281291 | 4.3:-42139188 | None:intergenic |
| GCTGTATCGGTTGAAGGTTC+TGG | 0.299723 | 4.3:-42139695 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.306273 | 4.3:-42139732 | None:intergenic |
| ACCGGGGAAGGCACCATCTT+TGG | 0.311761 | 4.3:+42139670 | MS.gene062566:CDS |
| GTAAATAGCAAGACGTTTAT+CGG | 0.328237 | 4.3:-42139597 | None:intergenic |
| CCAACTCAATTCACAACTAT+TGG | 0.336498 | 4.3:+42139286 | MS.gene062566:CDS |
| CGTCTTGCTATTTACAAAGT+TGG | 0.358413 | 4.3:+42139605 | MS.gene062566:CDS |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4.3:-42139503 | None:intergenic |
| TAGTGGTGGTTGAATACAAT+AGG | 0.367638 | 4.3:-42139043 | None:intergenic |
| AATGAAGGTACCAATGGTTT+AGG | 0.368336 | 4.3:-42139140 | None:intergenic |
| GCCTTTGCTGTATCGGTTGA+AGG | 0.385363 | 4.3:-42139701 | None:intergenic |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4.3:+42139625 | MS.gene062566:CDS |
| GATGTATCTTTATCGGGTTT+AGG | 0.388759 | 4.3:-42139725 | None:intergenic |
| CACCTTTCCGGGTTTAGCTC+CGG | 0.406609 | 4.3:-42139492 | None:intergenic |
| ACTTGGAGTTGTATTAGCTT+TGG | 0.415071 | 4.3:+42139826 | MS.gene062566:CDS |
| TCTGATGATGTATCTTTATC+GGG | 0.424899 | 4.3:-42139731 | None:intergenic |
| TTTAGGTGCCTTTGCTGTAT+CGG | 0.426276 | 4.3:-42139708 | None:intergenic |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4.3:-42139113 | None:intergenic |
| AATCCAACTGAAGACAAATC+TGG | 0.437545 | 4.3:+42139770 | MS.gene062566:CDS |
| GCCCATCGGAAAGAGAGTTT+AGG | 0.440037 | 4.3:-42139379 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4.3:-42139223 | None:intergenic |
| CCGGATGACAGTGCCTTCTC+AGG | 0.460688 | 4.3:+42139341 | MS.gene062566:CDS |
| GAGCCAGATTTGTCTTCAGT+TGG | 0.465037 | 4.3:-42139773 | None:intergenic |
| TGGAGTTGTATTAGCTTTGG+CGG | 0.475137 | 4.3:+42139829 | MS.gene062566:CDS |
| GGCTCTATGAAGATTGTGTA+TGG | 0.477473 | 4.3:+42139791 | MS.gene062566:CDS |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4.3:-42139119 | None:intergenic |
| CCTGAGAAGGCACTGTCATC+CGG | 0.484418 | 4.3:-42139341 | None:intergenic |
| CGTTGCTAAGGCACCGGGGA+AGG | 0.485444 | 4.3:+42139658 | MS.gene062566:CDS |
| GCTGGTAGTGTAGGTTGTAC+AGG | 0.487178 | 4.3:-42139095 | None:intergenic |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4.3:-42139104 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.494928 | 4.3:-42139671 | None:intergenic |
| AGTGGTGGTTGAATACAATA+GGG | 0.497408 | 4.3:-42139042 | None:intergenic |
| GCTCCGGCCAGCGTTCTCAC+AGG | 0.497948 | 4.3:-42139476 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.499317 | 4.3:-42139286 | None:intergenic |
| TTCCTAAACTCTCTTTCCGA+TGG | 0.502985 | 4.3:+42139377 | MS.gene062566:CDS |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4.3:-42139187 | None:intergenic |
| GGTTGTACAGGAGCAGTAGC+AGG | 0.514138 | 4.3:-42139083 | None:intergenic |
| GGAAGTGTGAACATATCGAC+AGG | 0.521296 | 4.3:+42139539 | MS.gene062566:CDS |
| GAAGTGAACACGACAATCAA+TGG | 0.521491 | 4.3:+42139563 | MS.gene062566:CDS |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4.3:-42139155 | None:intergenic |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4.3:-42139183 | None:intergenic |
| AACCCTGTGAGAACGCTGGC+CGG | 0.532314 | 4.3:+42139473 | MS.gene062566:CDS |
| GAAGGTTCTGGTGCCAAAGA+TGG | 0.536850 | 4.3:-42139683 | None:intergenic |
| GCCTTCTCAGGACTCAAGGC+GGG | 0.537555 | 4.3:+42139353 | MS.gene062566:CDS |
| CTCCGGCCAGCGTTCTCACA+GGG | 0.540068 | 4.3:-42139475 | None:intergenic |
| GGCCAGCGTTCTCACAGGGT+TGG | 0.540193 | 4.3:-42139471 | None:intergenic |
| TGGATTAACAATTCTTGCAC+CGG | 0.540856 | 4.3:+42139322 | MS.gene062566:CDS |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4.3:+42139130 | MS.gene062566:CDS |
| TGAAGATTGTGTATGGAAAG+TGG | 0.544324 | 4.3:+42139798 | MS.gene062566:CDS |
| TCCTAAACTCTCTTTCCGAT+GGG | 0.544697 | 4.3:+42139378 | MS.gene062566:CDS |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4.3:-42139164 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.560113 | 4.3:+42139515 | MS.gene062566:CDS |
| CATCGTCGGAATCCTGAGAA+AGG | 0.569747 | 4.3:+42139211 | MS.gene062566:CDS |
| GCAACGGAAAAGAAATCCAT+AGG | 0.570178 | 4.3:-42139641 | None:intergenic |
| ACGCTGGCCGGAGCTAAACC+CGG | 0.577289 | 4.3:+42139485 | MS.gene062566:CDS |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4.3:+42139179 | MS.gene062566:CDS |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4.3:+42139742 | MS.gene062566:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4.3:-42139173 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+TGG | 0.585762 | 4.3:-42139146 | None:intergenic |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4.3:-42139186 | None:intergenic |
| CTTCCCCGGTGCCTTAGCAA+CGG | 0.588968 | 4.3:-42139657 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.591338 | 4.3:+42139809 | MS.gene062566:CDS |
| GGCCGGAGCTAAACCCGGAA+AGG | 0.591999 | 4.3:+42139490 | MS.gene062566:CDS |
| AACTAGTATTGTAACTGAGA+AGG | 0.595775 | 4.3:-42139018 | None:intergenic |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4.3:-42139128 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4.3:-42139123 | None:intergenic |
| CAGTGCCTTCTCAGGACTCA+AGG | 0.598053 | 4.3:+42139349 | MS.gene062566:CDS |
| TCCCGCCTTGAGTCCTGAGA+AGG | 0.611208 | 4.3:-42139354 | None:intergenic |
| ACCTTCAACCGATACAGCAA+AGG | 0.611839 | 4.3:+42139700 | MS.gene062566:CDS |
| GACGATGTCAACAGTGCCTG+CGG | 0.612466 | 4.3:-42139195 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.622312 | 4.3:+42139217 | MS.gene062566:CDS |
| CGGAGCTAAACCCGGAAAGG+TGG | 0.630972 | 4.3:+42139493 | MS.gene062566:CDS |
| GCAGGCACTGTTGACATCGT+CGG | 0.636937 | 4.3:+42139197 | MS.gene062566:CDS |
| AACCAACCCTGTGAGAACGC+TGG | 0.641203 | 4.3:+42139469 | MS.gene062566:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4.3:-42139424 | None:intergenic |
| TAATTCAGATAAAGTAGTGG+TGG | 0.645296 | 4.3:-42139057 | None:intergenic |
| TGCCTTCTCAGGACTCAAGG+CGG | 0.646819 | 4.3:+42139352 | MS.gene062566:CDS |
| CTGAATGTTGTGAGTTACGG+TGG | 0.651196 | 4.3:+42139518 | MS.gene062566:CDS |
| TGATAATTCAGATAAAGTAG+TGG | 0.674305 | 4.3:-42139060 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.702439 | 4.3:+42139540 | MS.gene062566:CDS |
| AAGTGTGAACATATCGACAG+GGG | 0.748121 | 4.3:+42139541 | MS.gene062566:CDS |
| TTTCCGTTGCTAAGGCACCG+GGG | 0.751333 | 4.3:+42139654 | MS.gene062566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATAATTCAGATAAAGTAG+TGG | - | chr4.3:42139063-42139082 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | - | chr4.3:42139427-42139446 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | - | chr4.3:42139735-42139754 | None:intergenic | 25.0% |
| AACTAGTATTGTAACTGAGA+AGG | - | chr4.3:42139021-42139040 | None:intergenic | 30.0% | |
| GTAAATAGCAAGACGTTTAT+CGG | - | chr4.3:42139600-42139619 | None:intergenic | 30.0% | |
| TAATTCAGATAAAGTAGTGG+TGG | - | chr4.3:42139060-42139079 | None:intergenic | 30.0% | |
| ! | TCTGATGATGTATCTTTATC+GGG | - | chr4.3:42139734-42139753 | None:intergenic | 30.0% |
| AATCCAACTGAAGACAAATC+TGG | + | chr4.3:42139770-42139789 | MS.gene062566:CDS | 35.0% | |
| AGTGGTGGTTGAATACAATA+GGG | - | chr4.3:42139045-42139064 | None:intergenic | 35.0% | |
| CAACTATTGGCAACAAAAAC+AGG | + | chr4.3:42139299-42139318 | MS.gene062566:CDS | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | + | chr4.3:42139286-42139305 | MS.gene062566:CDS | 35.0% | |
| CCAATAGTTGTGAATTGAGT+TGG | - | chr4.3:42139289-42139308 | None:intergenic | 35.0% | |
| GAACTGAATGTTGTGAGTTA+CGG | + | chr4.3:42139515-42139534 | MS.gene062566:CDS | 35.0% | |
| GATGTATCTTTATCGGGTTT+AGG | - | chr4.3:42139728-42139747 | None:intergenic | 35.0% | |
| TAGTGGTGGTTGAATACAAT+AGG | - | chr4.3:42139046-42139065 | None:intergenic | 35.0% | |
| TGAAGATTGTGTATGGAAAG+TGG | + | chr4.3:42139798-42139817 | MS.gene062566:CDS | 35.0% | |
| TGGATTAACAATTCTTGCAC+CGG | + | chr4.3:42139322-42139341 | MS.gene062566:CDS | 35.0% | |
| ! | ACTTGGAGTTGTATTAGCTT+TGG | + | chr4.3:42139826-42139845 | MS.gene062566:CDS | 35.0% |
| !! | AATGAAGGTACCAATGGTTT+AGG | - | chr4.3:42139143-42139162 | None:intergenic | 35.0% |
| !! | CGTCTTGCTATTTACAAAGT+TGG | + | chr4.3:42139605-42139624 | MS.gene062566:CDS | 35.0% |
| AACATTCAGTTCCACCTTTC+CGG | - | chr4.3:42139507-42139526 | None:intergenic | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | + | chr4.3:42139541-42139560 | MS.gene062566:CDS | 40.0% | |
| CTATTGGCAACAAAAACAGG+TGG | + | chr4.3:42139302-42139321 | MS.gene062566:CDS | 40.0% | |
| GAAGTGAACACGACAATCAA+TGG | + | chr4.3:42139563-42139582 | MS.gene062566:CDS | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | + | chr4.3:42139540-42139559 | MS.gene062566:CDS | 40.0% | |
| GCAACGGAAAAGAAATCCAT+AGG | - | chr4.3:42139644-42139663 | None:intergenic | 40.0% | |
| GGCTCTATGAAGATTGTGTA+TGG | + | chr4.3:42139791-42139810 | MS.gene062566:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | + | chr4.3:42139809-42139828 | MS.gene062566:CDS | 40.0% | |
| TCCTAAACTCTCTTTCCGAT+GGG | + | chr4.3:42139378-42139397 | MS.gene062566:CDS | 40.0% | |
| TTCCTAAACTCTCTTTCCGA+TGG | + | chr4.3:42139377-42139396 | MS.gene062566:CDS | 40.0% | |
| ! | GGATTTCTTTTCCGTTGCTA+AGG | + | chr4.3:42139646-42139665 | MS.gene062566:CDS | 40.0% |
| ! | TTTAGGTGCCTTTGCTGTAT+CGG | - | chr4.3:42139711-42139730 | None:intergenic | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+TGG | - | chr4.3:42139149-42139168 | None:intergenic | 40.0% |
| !! | TGGAGTTGTATTAGCTTTGG+CGG | + | chr4.3:42139829-42139848 | MS.gene062566:CDS | 40.0% |
| ACATTCAGTTCCACCTTTCC+GGG | - | chr4.3:42139506-42139525 | None:intergenic | 45.0% | |
| ACCTTCAACCGATACAGCAA+AGG | + | chr4.3:42139700-42139719 | MS.gene062566:CDS | 45.0% | |
| CTGAATGTTGTGAGTTACGG+TGG | + | chr4.3:42139518-42139537 | MS.gene062566:CDS | 45.0% | |
| GAGCCAGATTTGTCTTCAGT+TGG | - | chr4.3:42139776-42139795 | None:intergenic | 45.0% | |
| TACATCATCAGATTCGTCGC+AGG | + | chr4.3:42139742-42139761 | MS.gene062566:CDS | 45.0% | |
| ! | CTAGGTGACTCTGGTAATGA+AGG | - | chr4.3:42139158-42139177 | None:intergenic | 45.0% |
| ! | GGAAGTGTGAACATATCGAC+AGG | + | chr4.3:42139539-42139558 | MS.gene062566:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | + | chr4.3:42139625-42139644 | MS.gene062566:CDS | 45.0% |
| AATGGTTTAGGAGCTGCAGC+TGG | - | chr4.3:42139131-42139150 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | + | chr4.3:42139130-42139149 | MS.gene062566:CDS | 50.0% | |
| CATCGTCGGAATCCTGAGAA+AGG | + | chr4.3:42139211-42139230 | MS.gene062566:CDS | 50.0% | |
| GCCCATCGGAAAGAGAGTTT+AGG | - | chr4.3:42139382-42139401 | None:intergenic | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | - | chr4.3:42139167-42139186 | None:intergenic | 50.0% | |
| TGTATGCCTTCGCCTTTCTC+AGG | - | chr4.3:42139226-42139245 | None:intergenic | 50.0% | |
| ! | CAACTCGAGCTTTTGCCCAT+CGG | - | chr4.3:42139396-42139415 | None:intergenic | 50.0% |
| ! | CTTTTCCGTTGCTAAGGCAC+CGG | + | chr4.3:42139652-42139671 | MS.gene062566:CDS | 50.0% |
| ! | GAAGGTTCTGGTGCCAAAGA+TGG | - | chr4.3:42139686-42139705 | None:intergenic | 50.0% |
| ! | GCTGGTAGTGTAGGTTGTAC+AGG | - | chr4.3:42139098-42139117 | None:intergenic | 50.0% |
| !! | GCCTTTGCTGTATCGGTTGA+AGG | - | chr4.3:42139704-42139723 | None:intergenic | 50.0% |
| !! | GCTGTATCGGTTGAAGGTTC+TGG | - | chr4.3:42139698-42139717 | None:intergenic | 50.0% |
| !! | TTTTCCGTTGCTAAGGCACC+GGG | + | chr4.3:42139653-42139672 | MS.gene062566:CDS | 50.0% |
| AACCAACCCTGTGAGAACGC+TGG | + | chr4.3:42139469-42139488 | MS.gene062566:CDS | 55.0% | |
| CAGTGCCTTCTCAGGACTCA+AGG | + | chr4.3:42139349-42139368 | MS.gene062566:CDS | 55.0% | |
| CGGAATCCTGAGAAAGGCGA+AGG | + | chr4.3:42139217-42139236 | MS.gene062566:CDS | 55.0% | |
| GACGATGTCAACAGTGCCTG+CGG | - | chr4.3:42139198-42139217 | None:intergenic | 55.0% | |
| GGTTGTACAGGAGCAGTAGC+AGG | - | chr4.3:42139086-42139105 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | - | chr4.3:42139176-42139195 | None:intergenic | 55.0% | |
| TGCCTTCTCAGGACTCAAGG+CGG | + | chr4.3:42139352-42139371 | MS.gene062566:CDS | 55.0% | |
| TTTAGGAGCTGCAGCTGGTG+TGG | - | chr4.3:42139126-42139145 | None:intergenic | 55.0% | |
| ! | CACCTTTCCGGGTTTAGCTC+CGG | - | chr4.3:42139495-42139514 | None:intergenic | 55.0% |
| ! | GCAGGCACTGTTGACATCGT+CGG | + | chr4.3:42139197-42139216 | MS.gene062566:CDS | 55.0% |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | - | chr4.3:42139107-42139126 | None:intergenic | 55.0% |
| !! | CCTGAGAAGGCACTGTCATC+CGG | - | chr4.3:42139344-42139363 | None:intergenic | 55.0% |
| !! | TTTCCGTTGCTAAGGCACCG+GGG | + | chr4.3:42139654-42139673 | MS.gene062566:CDS | 55.0% |
| AACCCTGTGAGAACGCTGGC+CGG | + | chr4.3:42139473-42139492 | MS.gene062566:CDS | 60.0% | |
| CCGGATGACAGTGCCTTCTC+AGG | + | chr4.3:42139341-42139360 | MS.gene062566:CDS | 60.0% | |
| CGGAGCTAAACCCGGAAAGG+TGG | + | chr4.3:42139493-42139512 | MS.gene062566:CDS | 60.0% | |
| CTTCCCCGGTGCCTTAGCAA+CGG | - | chr4.3:42139660-42139679 | None:intergenic | 60.0% | |
| GCCAAAGATGGTGCCTTCCC+CGG | - | chr4.3:42139674-42139693 | None:intergenic | 60.0% | |
| GCCTTCTCAGGACTCAAGGC+GGG | + | chr4.3:42139353-42139372 | MS.gene062566:CDS | 60.0% | |
| TCAACAGTGCCTGCGGTGTC+AGG | - | chr4.3:42139191-42139210 | None:intergenic | 60.0% | |
| TCCCGCCTTGAGTCCTGAGA+AGG | - | chr4.3:42139357-42139376 | None:intergenic | 60.0% | |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | - | chr4.3:42139189-42139208 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | - | chr4.3:42139190-42139209 | None:intergenic | 60.0% |
| !! | ACCGGGGAAGGCACCATCTT+TGG | + | chr4.3:42139670-42139689 | MS.gene062566:CDS | 60.0% |
| ACGCTGGCCGGAGCTAAACC+CGG | + | chr4.3:42139485-42139504 | MS.gene062566:CDS | 65.0% | |
| CTCCGGCCAGCGTTCTCACA+GGG | - | chr4.3:42139478-42139497 | None:intergenic | 65.0% | |
| GATTCCACCCCTGACACCGC+AGG | + | chr4.3:42139179-42139198 | MS.gene062566:CDS | 65.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | - | chr4.3:42139116-42139135 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | - | chr4.3:42139122-42139141 | None:intergenic | 65.0% | |
| GGCCAGCGTTCTCACAGGGT+TGG | - | chr4.3:42139474-42139493 | None:intergenic | 65.0% | |
| GGCCGGAGCTAAACCCGGAA+AGG | + | chr4.3:42139490-42139509 | MS.gene062566:CDS | 65.0% | |
| !! | CGTTGCTAAGGCACCGGGGA+AGG | + | chr4.3:42139658-42139677 | MS.gene062566:CDS | 65.0% |
| GCTCCGGCCAGCGTTCTCAC+AGG | - | chr4.3:42139479-42139498 | None:intergenic | 70.0% | |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | - | chr4.3:42139186-42139205 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 42138993 | 42139868 | 42138993 | ID=MS.gene062566 |
| chr4.3 | mRNA | 42138993 | 42139868 | 42138993 | ID=MS.gene062566.t1;Parent=MS.gene062566 |
| chr4.3 | exon | 42138993 | 42139868 | 42138993 | ID=MS.gene062566.t1.exon1;Parent=MS.gene062566.t1 |
| chr4.3 | CDS | 42138993 | 42139868 | 42138993 | ID=cds.MS.gene062566.t1;Parent=MS.gene062566.t1 |
| Gene Sequence |
| Protein sequence |
