Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062570.t1 | XP_003606412.1 | 89.3 | 291 | 31 | 0 | 1 | 291 | 1 | 291 | 4.60E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062570.t1 | Q8LEE9 | 55.2 | 145 | 63 | 2 | 78 | 221 | 44 | 187 | 3.5e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062570.t1 | G7JPF4 | 89.3 | 291 | 31 | 0 | 1 | 291 | 1 | 291 | 3.3e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene062570 | 0.9084 | 1.78E-81 | -1.69E-46 |
| MS.gene058848 | MS.gene062570 | 0.850223 | 1.95E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062570.t1 | MTR_4g059790 | 96.564 | 291 | 10 | 0 | 1 | 291 | 1 | 291 | 0.0 | 553 |
| MS.gene062570.t1 | MTR_4g059840 | 92.042 | 289 | 23 | 0 | 1 | 289 | 1 | 289 | 4.08e-180 | 498 |
| MS.gene062570.t1 | MTR_4g053380 | 78.840 | 293 | 58 | 3 | 1 | 289 | 2 | 294 | 3.39e-145 | 410 |
| MS.gene062570.t1 | MTR_2g093970 | 69.953 | 213 | 59 | 3 | 9 | 220 | 8 | 216 | 1.32e-95 | 284 |
| MS.gene062570.t1 | MTR_2g017970 | 55.909 | 220 | 87 | 3 | 73 | 291 | 68 | 278 | 5.04e-75 | 231 |
| MS.gene062570.t1 | MTR_8g087450 | 56.667 | 210 | 78 | 3 | 22 | 220 | 17 | 224 | 1.00e-74 | 231 |
| MS.gene062570.t1 | MTR_2g017960 | 53.731 | 268 | 113 | 4 | 5 | 272 | 2 | 258 | 2.41e-73 | 226 |
| MS.gene062570.t1 | MTR_2g093980 | 45.704 | 291 | 141 | 6 | 5 | 289 | 3 | 282 | 3.99e-71 | 221 |
| MS.gene062570.t1 | MTR_2g017950 | 44.771 | 306 | 128 | 11 | 1 | 283 | 1 | 288 | 5.82e-69 | 216 |
| MS.gene062570.t1 | MTR_8g087460 | 51.883 | 239 | 89 | 8 | 5 | 220 | 7 | 242 | 1.16e-66 | 211 |
| MS.gene062570.t1 | MTR_4g059780 | 55.330 | 197 | 79 | 3 | 30 | 222 | 48 | 239 | 1.76e-66 | 210 |
| MS.gene062570.t1 | MTR_8g087470 | 52.720 | 239 | 87 | 8 | 5 | 220 | 7 | 242 | 2.63e-66 | 210 |
| MS.gene062570.t1 | MTR_4g059720 | 50.233 | 215 | 74 | 5 | 7 | 221 | 8 | 189 | 6.28e-59 | 189 |
| MS.gene062570.t1 | MTR_2g093990 | 54.362 | 149 | 67 | 1 | 73 | 221 | 41 | 188 | 1.72e-50 | 167 |
| MS.gene062570.t1 | MTR_7g101080 | 44.304 | 158 | 86 | 2 | 65 | 221 | 32 | 188 | 2.42e-38 | 135 |
| MS.gene062570.t1 | MTR_2g090765 | 44.231 | 156 | 86 | 1 | 66 | 221 | 31 | 185 | 6.89e-30 | 113 |
| MS.gene062570.t1 | MTR_7g075453 | 32.778 | 180 | 116 | 2 | 66 | 245 | 177 | 351 | 1.85e-19 | 88.2 |
| MS.gene062570.t1 | MTR_5g098060 | 30.601 | 183 | 115 | 4 | 72 | 252 | 47 | 219 | 4.44e-17 | 79.3 |
| MS.gene062570.t1 | MTR_5g098420 | 28.934 | 197 | 125 | 7 | 40 | 235 | 167 | 349 | 1.68e-12 | 67.8 |
| MS.gene062570.t1 | MTR_2g437700 | 31.169 | 154 | 99 | 4 | 72 | 221 | 194 | 344 | 2.34e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062570.t1 | AT5G03170 | 47.904 | 167 | 86 | 1 | 66 | 231 | 29 | 195 | 1.92e-47 | 159 |
| MS.gene062570.t1 | AT5G60490 | 54.000 | 150 | 67 | 2 | 73 | 221 | 39 | 187 | 3.72e-47 | 158 |
| MS.gene062570.t1 | AT5G44130 | 36.316 | 190 | 115 | 3 | 72 | 256 | 35 | 223 | 1.11e-28 | 110 |
| MS.gene062570.t1 | AT2G20520 | 36.667 | 210 | 127 | 4 | 52 | 258 | 19 | 225 | 2.75e-28 | 109 |
| MS.gene062570.t1 | AT1G03870 | 33.333 | 213 | 131 | 5 | 72 | 283 | 38 | 240 | 1.08e-25 | 102 |
| MS.gene062570.t1 | AT3G60900 | 29.444 | 180 | 122 | 2 | 66 | 245 | 183 | 357 | 5.97e-16 | 77.8 |
| MS.gene062570.t1 | AT3G46550 | 30.286 | 175 | 113 | 6 | 58 | 227 | 193 | 363 | 4.82e-14 | 72.4 |
| MS.gene062570.t1 | AT2G45470 | 28.105 | 153 | 105 | 2 | 73 | 225 | 189 | 336 | 8.22e-11 | 62.8 |
Find 72 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4.3:+42202683 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.286537 | 4.3:+42202455 | None:intergenic |
| CCGGATGACAGCGCCTTTGC+AGG | 0.296032 | 4.3:-42202846 | MS.gene062570:CDS |
| GCTGTATCGGTTGAAGGTTC+TGG | 0.299723 | 4.3:+42202492 | None:intergenic |
| ACCGGGGAAGGCACCATCTT+TGG | 0.311761 | 4.3:-42202517 | MS.gene062570:CDS |
| CCAACTCAATTCACAACTAT+TGG | 0.341146 | 4.3:-42202901 | MS.gene062570:CDS |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.354935 | 4.3:+42202999 | None:intergenic |
| CGTCTTGCTATTTACAAAGT+TGG | 0.358413 | 4.3:-42202582 | MS.gene062570:CDS |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4.3:+42202684 | None:intergenic |
| AATGAAGGTACCAATGGTTT+AGG | 0.368336 | 4.3:+42203047 | None:intergenic |
| CCTGCAAAGGCGCTGTCATC+CGG | 0.387064 | 4.3:+42202846 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4.3:-42202714 | MS.gene062570:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4.3:-42202562 | MS.gene062570:CDS |
| GCCTTTGCTGTATCGGTTGA+AGG | 0.393378 | 4.3:+42202486 | None:intergenic |
| TGGACTTGTATTAGCTTTGA+CGG | 0.406700 | 4.3:-42202358 | MS.gene062570:CDS |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4.3:+42203074 | None:intergenic |
| GGCTCTATCAAGATTGTGTA+TGG | 0.434280 | 4.3:-42202396 | MS.gene062570:CDS |
| GCTGGTAGTGTAGGTTGTAT+AGG | 0.438970 | 4.3:+42203092 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4.3:+42202964 | None:intergenic |
| TTTAGGCGCCTTTGCTGTAT+CGG | 0.457045 | 4.3:+42202479 | None:intergenic |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4.3:-42202417 | MS.gene062570:CDS |
| GTCCATCGGAAAGAGAGTTA+AGG | 0.464359 | 4.3:+42202808 | None:intergenic |
| CGTTTCTAAGGCACCGGGGA+AGG | 0.474089 | 4.3:-42202529 | MS.gene062570:CDS |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4.3:+42203068 | None:intergenic |
| GATGTATCTTTATCGGCTTT+AGG | 0.486485 | 4.3:+42202462 | None:intergenic |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4.3:+42203083 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.494928 | 4.3:+42202516 | None:intergenic |
| TTCCTTAACTCTCTTTCCGA+TGG | 0.505029 | 4.3:-42202810 | MS.gene062570:CDS |
| GCCTTTGCAGGACTCAAAGC+AGG | 0.505794 | 4.3:-42202834 | MS.gene062570:CDS |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4.3:+42203000 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.509984 | 4.3:+42202901 | None:intergenic |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4.3:+42202711 | None:intergenic |
| GGAAGTGTGAACATATCGAC+AGG | 0.523735 | 4.3:-42202648 | MS.gene062570:CDS |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4.3:+42203032 | None:intergenic |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4.3:+42203004 | None:intergenic |
| GCAGGCACTGTTGACATTGT+CGG | 0.533562 | 4.3:-42202990 | MS.gene062570:CDS |
| GAAGTGAACACAACAATCAA+TGG | 0.536466 | 4.3:-42202624 | MS.gene062570:CDS |
| GAAGGTTCTGGTGCCAAAGA+TGG | 0.536850 | 4.3:+42202504 | None:intergenic |
| TGGATTAACGATTCTTGCAC+CGG | 0.540187 | 4.3:-42202865 | MS.gene062570:CDS |
| CTTCCCCGGTGCCTTAGAAA+CGG | 0.542193 | 4.3:+42202530 | None:intergenic |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4.3:-42203057 | MS.gene062570:CDS |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4.3:+42203023 | None:intergenic |
| GAAACGGAAAAGAAATCCAT+AGG | 0.554500 | 4.3:+42202546 | None:intergenic |
| AGCAAGTGTTCTCACAGGGT+TGG | 0.556533 | 4.3:+42202716 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.564207 | 4.3:-42202672 | MS.gene062570:CDS |
| CATTGTCGGAATCCTGAGAA+AGG | 0.566305 | 4.3:-42202976 | MS.gene062570:CDS |
| AACTAGTAGTGCAAGTGAGA+AGG | 0.570303 | 4.3:+42203169 | None:intergenic |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.574947 | 4.3:+42202712 | None:intergenic |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4.3:-42203008 | MS.gene062570:CDS |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4.3:-42202697 | MS.gene062570:CDS |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4.3:-42202445 | MS.gene062570:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4.3:+42203014 | None:intergenic |
| GGTTGTATAGGAGCAGTAGC+TGG | 0.582821 | 4.3:+42203104 | None:intergenic |
| TCAAGATTGTGTATGGAAAG+TGG | 0.583724 | 4.3:-42202389 | MS.gene062570:CDS |
| TCTGGTAATGAAGGTACCAA+TGG | 0.585762 | 4.3:+42203041 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4.3:-42202378 | MS.gene062570:CDS |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4.3:+42203001 | None:intergenic |
| TCCTGCTTTGAGTCCTGCAA+AGG | 0.587782 | 4.3:+42202833 | None:intergenic |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4.3:-42202702 | MS.gene062570:CDS |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4.3:+42203059 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4.3:+42203064 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.598403 | 4.3:-42202970 | MS.gene062570:CDS |
| ACCTTCAACCGATACAGCAA+AGG | 0.611839 | 4.3:-42202487 | MS.gene062570:CDS |
| GACAATGTCAACAGTGCCTG+CGG | 0.617535 | 4.3:+42202992 | None:intergenic |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4.3:-42202694 | MS.gene062570:CDS |
| CTGAATGTTGTGAGTTACGG+AGG | 0.642257 | 4.3:-42202669 | MS.gene062570:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4.3:+42202763 | None:intergenic |
| TAGTTGAGATAAACTAGTGG+TGG | 0.696029 | 4.3:+42203130 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.704878 | 4.3:-42202647 | MS.gene062570:CDS |
| AAGTGTGAACATATCGACAG+GGG | 0.734548 | 4.3:-42202646 | MS.gene062570:CDS |
| TGATAGTTGAGATAAACTAG+TGG | 0.789490 | 4.3:+42203127 | None:intergenic |
| TTTCCGTTTCTAAGGCACCG+GGG | 0.799303 | 4.3:-42202533 | MS.gene062570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAGTCTGAAATAACA+TGG | + | chr4.3:42202775-42202794 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | + | chr4.3:42203083-42203102 | None:intergenic | 25.0% |
| TGATAGTTGAGATAAACTAG+TGG | + | chr4.3:42202411-42202430 | None:intergenic | 30.0% | |
| AATCCAACTGAAAACAAGTC+TGG | - | chr4.3:42203118-42203137 | MS.gene062570:CDS | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | - | chr4.3:42202634-42202653 | MS.gene062570:CDS | 35.0% | |
| CCAATAGTTGTGAATTGAGT+TGG | + | chr4.3:42202637-42202656 | None:intergenic | 35.0% | |
| GAAACGGAAAAGAAATCCAT+AGG | + | chr4.3:42202992-42203011 | None:intergenic | 35.0% | |
| GAACTGAATGTTGTGAGTTA+CGG | - | chr4.3:42202863-42202882 | MS.gene062570:CDS | 35.0% | |
| GAAGTGAACACAACAATCAA+TGG | - | chr4.3:42202911-42202930 | MS.gene062570:CDS | 35.0% | |
| TAGTTGAGATAAACTAGTGG+TGG | + | chr4.3:42202408-42202427 | None:intergenic | 35.0% | |
| TCAAGATTGTGTATGGAAAG+TGG | - | chr4.3:42203146-42203165 | MS.gene062570:CDS | 35.0% | |
| ! | CAACTATTGGCTACAAAAAC+AGG | - | chr4.3:42202647-42202666 | MS.gene062570:CDS | 35.0% |
| ! | GGATTTCTTTTCCGTTTCTA+AGG | - | chr4.3:42202994-42203013 | MS.gene062570:CDS | 35.0% |
| !! | AATGAAGGTACCAATGGTTT+AGG | + | chr4.3:42202491-42202510 | None:intergenic | 35.0% |
| !! | CGTCTTGCTATTTACAAAGT+TGG | - | chr4.3:42202953-42202972 | MS.gene062570:CDS | 35.0% |
| !! | GATGTATCTTTATCGGCTTT+AGG | + | chr4.3:42203076-42203095 | None:intergenic | 35.0% |
| !! | TGGACTTGTATTAGCTTTGA+CGG | - | chr4.3:42203177-42203196 | MS.gene062570:CDS | 35.0% |
| AACATTCAGTTCCACCTTTC+CGG | + | chr4.3:42202855-42202874 | None:intergenic | 40.0% | |
| AACTAGTAGTGCAAGTGAGA+AGG | + | chr4.3:42202369-42202388 | None:intergenic | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | - | chr4.3:42202889-42202908 | MS.gene062570:CDS | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | - | chr4.3:42202888-42202907 | MS.gene062570:CDS | 40.0% | |
| GGCTCTATCAAGATTGTGTA+TGG | - | chr4.3:42203139-42203158 | MS.gene062570:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | - | chr4.3:42203157-42203176 | MS.gene062570:CDS | 40.0% | |
| TGGATTAACGATTCTTGCAC+CGG | - | chr4.3:42202670-42202689 | MS.gene062570:CDS | 40.0% | |
| TTCCTTAACTCTCTTTCCGA+TGG | - | chr4.3:42202725-42202744 | MS.gene062570:CDS | 40.0% | |
| ! | CTATTGGCTACAAAAACAGG+TGG | - | chr4.3:42202650-42202669 | MS.gene062570:CDS | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+TGG | + | chr4.3:42202497-42202516 | None:intergenic | 40.0% |
| ACATTCAGTTCCACCTTTCC+GGG | + | chr4.3:42202854-42202873 | None:intergenic | 45.0% | |
| ACCTTCAACCGATACAGCAA+AGG | - | chr4.3:42203048-42203067 | MS.gene062570:CDS | 45.0% | |
| CATTGTCGGAATCCTGAGAA+AGG | - | chr4.3:42202559-42202578 | MS.gene062570:CDS | 45.0% | |
| CTGAATGTTGTGAGTTACGG+AGG | - | chr4.3:42202866-42202885 | MS.gene062570:CDS | 45.0% | |
| GTCCATCGGAAAGAGAGTTA+AGG | + | chr4.3:42202730-42202749 | None:intergenic | 45.0% | |
| TACATCATCAGATTCGTCGC+AGG | - | chr4.3:42203090-42203109 | MS.gene062570:CDS | 45.0% | |
| ! | CAACTCGAGCTTTTGTCCAT+CGG | + | chr4.3:42202744-42202763 | None:intergenic | 45.0% |
| ! | CTAGGTGACTCTGGTAATGA+AGG | + | chr4.3:42202506-42202525 | None:intergenic | 45.0% |
| ! | GCTGGTAGTGTAGGTTGTAT+AGG | + | chr4.3:42202446-42202465 | None:intergenic | 45.0% |
| ! | GGAAGTGTGAACATATCGAC+AGG | - | chr4.3:42202887-42202906 | MS.gene062570:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | - | chr4.3:42202973-42202992 | MS.gene062570:CDS | 45.0% |
| ! | TTTAGGCGCCTTTGCTGTAT+CGG | + | chr4.3:42203059-42203078 | None:intergenic | 45.0% |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | + | chr4.3:42203124-42203143 | None:intergenic | 45.0% |
| !!! | CTTTTCCGTTTCTAAGGCAC+CGG | - | chr4.3:42203000-42203019 | MS.gene062570:CDS | 45.0% |
| !!! | TTTTCCGTTTCTAAGGCACC+GGG | - | chr4.3:42203001-42203020 | MS.gene062570:CDS | 45.0% |
| AACCCTGTGAGAACACTTGC+TGG | - | chr4.3:42202821-42202840 | MS.gene062570:CDS | 50.0% | |
| AATGGTTTAGGAGCTGCAGC+TGG | + | chr4.3:42202479-42202498 | None:intergenic | 50.0% | |
| AGCAAGTGTTCTCACAGGGT+TGG | + | chr4.3:42202822-42202841 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | - | chr4.3:42202478-42202497 | MS.gene062570:CDS | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | + | chr4.3:42202826-42202845 | None:intergenic | 50.0% | |
| GACAATGTCAACAGTGCCTG+CGG | + | chr4.3:42202546-42202565 | None:intergenic | 50.0% | |
| GGTTGTATAGGAGCAGTAGC+TGG | + | chr4.3:42202434-42202453 | None:intergenic | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | + | chr4.3:42202515-42202534 | None:intergenic | 50.0% | |
| TGTATGCCTTCGCCTTTCTC+AGG | + | chr4.3:42202574-42202593 | None:intergenic | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | - | chr4.3:42202833-42202852 | MS.gene062570:CDS | 50.0% |
| ! | GAAGGTTCTGGTGCCAAAGA+TGG | + | chr4.3:42203034-42203053 | None:intergenic | 50.0% |
| ! | GCAGGCACTGTTGACATTGT+CGG | - | chr4.3:42202545-42202564 | MS.gene062570:CDS | 50.0% |
| ! | TCCTGCTTTGAGTCCTGCAA+AGG | + | chr4.3:42202705-42202724 | None:intergenic | 50.0% |
| !! | GCCTTTGCTGTATCGGTTGA+AGG | + | chr4.3:42203052-42203071 | None:intergenic | 50.0% |
| !! | GCTGTATCGGTTGAAGGTTC+TGG | + | chr4.3:42203046-42203065 | None:intergenic | 50.0% |
| !! | TTTCCGTTTCTAAGGCACCG+GGG | - | chr4.3:42203002-42203021 | MS.gene062570:CDS | 50.0% |
| CGGAATCCTGAGAAAGGCGA+AGG | - | chr4.3:42202565-42202584 | MS.gene062570:CDS | 55.0% | |
| CTTCCCCGGTGCCTTAGAAA+CGG | + | chr4.3:42203008-42203027 | None:intergenic | 55.0% | |
| GCCTTTGCAGGACTCAAAGC+AGG | - | chr4.3:42202701-42202720 | MS.gene062570:CDS | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | + | chr4.3:42202827-42202846 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | + | chr4.3:42202524-42202543 | None:intergenic | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | - | chr4.3:42202838-42202857 | MS.gene062570:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | - | chr4.3:42202841-42202860 | MS.gene062570:CDS | 55.0% | |
| TTTAGGAGCTGCAGCTGGTG+TGG | + | chr4.3:42202474-42202493 | None:intergenic | 55.0% | |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | + | chr4.3:42202455-42202474 | None:intergenic | 55.0% |
| GCCAAAGATGGTGCCTTCCC+CGG | + | chr4.3:42203022-42203041 | None:intergenic | 60.0% | |
| TCAACAGTGCCTGCGGTGTC+AGG | + | chr4.3:42202539-42202558 | None:intergenic | 60.0% | |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | + | chr4.3:42202537-42202556 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | + | chr4.3:42202538-42202557 | None:intergenic | 60.0% |
| !! | ACCGGGGAAGGCACCATCTT+TGG | - | chr4.3:42203018-42203037 | MS.gene062570:CDS | 60.0% |
| !! | CCTGCAAAGGCGCTGTCATC+CGG | + | chr4.3:42202692-42202711 | None:intergenic | 60.0% |
| !! | CGTTTCTAAGGCACCGGGGA+AGG | - | chr4.3:42203006-42203025 | MS.gene062570:CDS | 60.0% |
| CCGGATGACAGCGCCTTTGC+AGG | - | chr4.3:42202689-42202708 | MS.gene062570:CDS | 65.0% | |
| GATTCCACCCCTGACACCGC+AGG | - | chr4.3:42202527-42202546 | MS.gene062570:CDS | 65.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | + | chr4.3:42202464-42202483 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | + | chr4.3:42202470-42202489 | None:intergenic | 65.0% | |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | + | chr4.3:42202534-42202553 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 42202341 | 42203216 | 42202341 | ID=MS.gene062570 |
| chr4.3 | mRNA | 42202341 | 42203216 | 42202341 | ID=MS.gene062570.t1;Parent=MS.gene062570 |
| chr4.3 | exon | 42202341 | 42203216 | 42202341 | ID=MS.gene062570.t1.exon1;Parent=MS.gene062570.t1 |
| chr4.3 | CDS | 42202341 | 42203216 | 42202341 | ID=cds.MS.gene062570.t1;Parent=MS.gene062570.t1 |
| Gene Sequence |
| Protein sequence |
