Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062705.t1 | XP_013466065.1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 1.90E-145 | 525 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062705.t1 | Q93VG8 | 61.9 | 147 | 56 | 0 | 42 | 188 | 26 | 172 | 2.2e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062705.t1 | A0A072VDJ9 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 1.4e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049695 | MS.gene062705 | 0.832733 | 7.99E-56 | -1.69E-46 |
| MS.gene059154 | MS.gene062705 | 0.805762 | 1.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062705.t1 | MTR_1g022015 | 99.603 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 0.0 | 521 |
| MS.gene062705.t1 | MTR_1g034490 | 70.000 | 240 | 67 | 2 | 1 | 240 | 1 | 235 | 1.25e-122 | 349 |
| MS.gene062705.t1 | MTR_1g013110 | 57.216 | 194 | 75 | 1 | 39 | 232 | 14 | 199 | 5.88e-81 | 242 |
| MS.gene062705.t1 | MTR_3g106240 | 64.024 | 164 | 59 | 0 | 39 | 202 | 14 | 177 | 3.67e-80 | 240 |
| MS.gene062705.t1 | MTR_4g100500 | 64.000 | 150 | 54 | 0 | 41 | 190 | 21 | 170 | 8.92e-74 | 224 |
| MS.gene062705.t1 | MTR_5g013040 | 62.162 | 148 | 56 | 0 | 41 | 188 | 22 | 169 | 9.97e-72 | 219 |
| MS.gene062705.t1 | MTR_4g008530 | 54.595 | 185 | 80 | 2 | 25 | 206 | 10 | 193 | 4.05e-69 | 213 |
| MS.gene062705.t1 | MTR_5g013040 | 60.811 | 148 | 55 | 1 | 41 | 188 | 22 | 166 | 2.05e-67 | 208 |
| MS.gene062705.t1 | MTR_4g113720 | 59.740 | 154 | 61 | 1 | 44 | 196 | 31 | 184 | 2.62e-67 | 208 |
| MS.gene062705.t1 | MTR_4g113720 | 59.740 | 154 | 61 | 1 | 44 | 196 | 31 | 184 | 2.64e-67 | 207 |
| MS.gene062705.t1 | MTR_2g054770 | 54.194 | 155 | 71 | 0 | 49 | 203 | 33 | 187 | 4.28e-65 | 202 |
| MS.gene062705.t1 | MTR_5g013040 | 54.167 | 144 | 59 | 2 | 46 | 188 | 20 | 157 | 5.46e-55 | 176 |
| MS.gene062705.t1 | MTR_1g100100 | 34.965 | 143 | 74 | 5 | 44 | 170 | 4 | 143 | 3.18e-18 | 81.3 |
| MS.gene062705.t1 | MTR_6g048290 | 33.103 | 145 | 81 | 4 | 42 | 171 | 2 | 145 | 1.82e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062705.t1 | AT1G47740 | 71.875 | 256 | 63 | 4 | 1 | 252 | 29 | 279 | 6.80e-127 | 361 |
| MS.gene062705.t1 | AT1G47740 | 71.875 | 256 | 63 | 4 | 1 | 252 | 29 | 279 | 6.80e-127 | 361 |
| MS.gene062705.t1 | AT1G47740 | 71.875 | 256 | 63 | 4 | 1 | 252 | 29 | 279 | 6.80e-127 | 361 |
| MS.gene062705.t1 | AT5G25170 | 63.855 | 166 | 58 | 1 | 39 | 202 | 15 | 180 | 4.94e-77 | 232 |
| MS.gene062705.t1 | AT1G80690 | 56.044 | 182 | 79 | 1 | 28 | 209 | 2 | 182 | 4.79e-74 | 225 |
| MS.gene062705.t1 | AT2G25190 | 60.736 | 163 | 64 | 0 | 40 | 202 | 15 | 177 | 2.33e-73 | 224 |
| MS.gene062705.t1 | AT5G47310 | 64.828 | 145 | 51 | 0 | 42 | 186 | 28 | 172 | 8.97e-73 | 223 |
| MS.gene062705.t1 | AT1G80690 | 54.839 | 186 | 79 | 2 | 28 | 209 | 2 | 186 | 4.64e-72 | 220 |
| MS.gene062705.t1 | AT4G17486 | 58.974 | 156 | 64 | 0 | 33 | 188 | 17 | 172 | 1.30e-71 | 219 |
| MS.gene062705.t1 | AT4G31980 | 59.756 | 164 | 58 | 2 | 27 | 187 | 7 | 165 | 2.17e-63 | 210 |
| MS.gene062705.t1 | AT4G17486 | 60.145 | 138 | 55 | 0 | 33 | 170 | 17 | 154 | 2.10e-62 | 194 |
| MS.gene062705.t1 | AT5G25170 | 58.519 | 135 | 54 | 1 | 70 | 202 | 2 | 136 | 2.61e-53 | 170 |
| MS.gene062705.t1 | AT4G25680 | 32.639 | 144 | 87 | 4 | 28 | 169 | 8 | 143 | 3.98e-16 | 75.9 |
| MS.gene062705.t1 | AT4G25660 | 32.639 | 144 | 87 | 4 | 28 | 169 | 8 | 143 | 9.45e-16 | 75.1 |
Find 55 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATAAACAGCCTCTTAA+AGG | 0.165224 | 1.4:-2397549 | None:intergenic |
| GAAGAAATTCTTAGTGCTTC+TGG | 0.179953 | 1.4:-2397396 | None:intergenic |
| ATTGTGCCTCTTCATTTAAA+AGG | 0.274662 | 1.4:+2396004 | MS.gene062705:CDS |
| GACATATGCTACAAGCTTAC+AGG | 0.302536 | 1.4:+2396718 | MS.gene062705:CDS |
| CTTTGAATCCTGTTCAGGTT+AGG | 0.313137 | 1.4:+2396614 | MS.gene062705:CDS |
| TACATCTTTGAATCCTGTTC+AGG | 0.336718 | 1.4:+2396609 | MS.gene062705:CDS |
| CTATCATGTGCCTCATGATT+AGG | 0.345697 | 1.4:-2397432 | None:intergenic |
| ATCTATTAACCGTTCCTTCA+AGG | 0.354021 | 1.4:+2397599 | MS.gene062705:CDS |
| CAATTCCAACTTGGGTAAAT+CGG | 0.354741 | 1.4:+2396746 | MS.gene062705:CDS |
| TCATACACATTAAGATAAAC+TGG | 0.373779 | 1.4:-2396097 | None:intergenic |
| CCAATACACATAACCATTCA+TGG | 0.376837 | 1.4:-2396128 | None:intergenic |
| TGTTCAGGTTAGGGAGTTCA+TGG | 0.381216 | 1.4:+2396624 | MS.gene062705:CDS |
| AAACAGTTACCTTTCCTTGA+AGG | 0.382205 | 1.4:-2397613 | None:intergenic |
| TTTGAATCCTGTTCAGGTTA+GGG | 0.385241 | 1.4:+2396615 | MS.gene062705:CDS |
| TTTCTACAATCACCTTTAAG+AGG | 0.386624 | 1.4:+2397537 | MS.gene062705:CDS |
| TTGTAGAAACAATGAAGATT+TGG | 0.406339 | 1.4:-2397523 | None:intergenic |
| CATGGTGTAGAATATGCATT+TGG | 0.412888 | 1.4:+2396496 | MS.gene062705:CDS |
| CAGGGAAATCAATTCCAACT+TGG | 0.414012 | 1.4:+2396737 | MS.gene062705:CDS |
| CATGAATGGTTATGTGTATT+GGG | 0.415496 | 1.4:+2396129 | MS.gene062705:CDS |
| TATGTGTATTGGGCCGGTCT+TGG | 0.423862 | 1.4:+2396139 | MS.gene062705:CDS |
| CCATGAATGGTTATGTGTAT+TGG | 0.424620 | 1.4:+2396128 | MS.gene062705:CDS |
| ATGAACTCCCTAACCTGAAC+AGG | 0.425276 | 1.4:-2396622 | None:intergenic |
| GCAAGCCGATTTACCCAAGT+TGG | 0.426198 | 1.4:-2396751 | None:intergenic |
| AATGCCCAGGCTTCAAGTTC+AGG | 0.427519 | 1.4:+2396566 | MS.gene062705:CDS |
| GACTTCCTGAACTTGAAGCC+TGG | 0.467872 | 1.4:-2396571 | None:intergenic |
| TATCATCAAAGTGGCCATCA+TGG | 0.473681 | 1.4:+2397565 | MS.gene062705:CDS |
| GCACTAAGAATTTCTTCTGT+GGG | 0.486160 | 1.4:+2397402 | MS.gene062705:CDS |
| ATGAAATTGAAGTCTAAGAA+AGG | 0.507796 | 1.4:+2395971 | MS.gene062705:CDS |
| ACTTCCTGAACTTGAAGCCT+GGG | 0.521778 | 1.4:-2396570 | None:intergenic |
| GATTTGCTCAATTCCCATGA+TGG | 0.523695 | 1.4:-2397579 | None:intergenic |
| AATTGAAGTCTAAGAAAGGA+TGG | 0.524868 | 1.4:+2395975 | MS.gene062705:CDS |
| GTTGAACCTCGGCAATGCCC+AGG | 0.525057 | 1.4:+2396553 | MS.gene062705:CDS |
| ATCTATCACTCTGGTGTCGA+AGG | 0.531982 | 1.4:+2396163 | MS.gene062705:CDS |
| ATCATCAAAGTGGCCATCAT+GGG | 0.535412 | 1.4:+2397566 | MS.gene062705:CDS |
| TTAACCGTTCCTTCAAGGAA+AGG | 0.547458 | 1.4:+2397604 | MS.gene062705:CDS |
| AGGGAAATCAATTCCAACTT+GGG | 0.551036 | 1.4:+2396738 | MS.gene062705:CDS |
| GGTCTTGGTATCTATCACTC+TGG | 0.557082 | 1.4:+2396154 | MS.gene062705:CDS |
| GTAAATCGGCTTGCTAAGCT+AGG | 0.560765 | 1.4:+2396760 | MS.gene062705:CDS |
| TTCAGGAAGTCGATATTCAT+CGG | 0.566691 | 1.4:+2396583 | MS.gene062705:CDS |
| CAATACACATAACCATTCAT+GGG | 0.567668 | 1.4:-2396127 | None:intergenic |
| GTTACCTTTCCTTGAAGGAA+CGG | 0.569265 | 1.4:-2397608 | None:intergenic |
| TCATTTAAAAGGAAAATCAC+CGG | 0.579187 | 1.4:+2396015 | MS.gene062705:CDS |
| TTGAAGCCTGGGCATTGCCG+AGG | 0.584621 | 1.4:-2396559 | None:intergenic |
| AATTCAGCTAGCCATGGACC+TGG | 0.589659 | 1.4:+2396067 | MS.gene062705:CDS |
| AATGGTTATGTGTATTGGGC+CGG | 0.593181 | 1.4:+2396133 | MS.gene062705:CDS |
| TATGACTTGACACCCATGAA+TGG | 0.598526 | 1.4:+2396115 | MS.gene062705:CDS |
| ACATATGCTACAAGCTTACA+GGG | 0.604015 | 1.4:+2396719 | MS.gene062705:CDS |
| AGCACTAAGAATTTCTTCTG+TGG | 0.616876 | 1.4:+2397401 | MS.gene062705:CDS |
| GAGGCTGTTTATCATCAAAG+TGG | 0.631803 | 1.4:+2397556 | MS.gene062705:CDS |
| CACTAAGAATTTCTTCTGTG+GGG | 0.635774 | 1.4:+2397403 | MS.gene062705:CDS |
| AGAGTGATAGATACCAAGAC+CGG | 0.635910 | 1.4:-2396152 | None:intergenic |
| AAAGTAAATTCAGCTAGCCA+TGG | 0.644369 | 1.4:+2396061 | MS.gene062705:CDS |
| GGGGCATGATCCTAATCATG+AGG | 0.671130 | 1.4:+2397422 | MS.gene062705:CDS |
| GCTCATGACTACCCAACAAG+CGG | 0.680057 | 1.4:+2396520 | MS.gene062705:CDS |
| TGTGAGTGTGCAAACTACAA+CGG | 0.683483 | 1.4:+2396649 | MS.gene062705:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAACAATATTAGCAT+TGG | - | chr1.4:2397197-2397216 | None:intergenic | 15.0% |
| !! | ATTGTGAAATTGAATAAGAA+AGG | + | chr1.4:2397150-2397169 | MS.gene062705:intron | 20.0% |
| !!! | AGTCAAATGTTTTTAATGAT+CGG | - | chr1.4:2396351-2396370 | None:intergenic | 20.0% |
| ! | ATGAAATTGAAGTCTAAGAA+AGG | + | chr1.4:2395971-2395990 | MS.gene062705:CDS | 25.0% |
| ! | CAAATGAAGAAGAAAAACAT+TGG | - | chr1.4:2397317-2397336 | None:intergenic | 25.0% |
| ! | TCATACACATTAAGATAAAC+TGG | - | chr1.4:2396100-2396119 | None:intergenic | 25.0% |
| ! | TCATTTAAAAGGAAAATCAC+CGG | + | chr1.4:2396015-2396034 | MS.gene062705:CDS | 25.0% |
| ! | TTGTAGAAACAATGAAGATT+TGG | - | chr1.4:2397526-2397545 | None:intergenic | 25.0% |
| !! | CAATGTTTTTCTTCTTCATT+TGG | + | chr1.4:2397315-2397334 | MS.gene062705:intron | 25.0% |
| !! | GATTTTCCTTTTAAATGAAG+AGG | - | chr1.4:2396013-2396032 | None:intergenic | 25.0% |
| !!! | GTCAAATGTTTTTAATGATC+GGG | - | chr1.4:2396350-2396369 | None:intergenic | 25.0% |
| AAGAATATCCTAAAGACTAG+AGG | - | chr1.4:2396846-2396865 | None:intergenic | 30.0% | |
| AATTGAAGTCTAAGAAAGGA+TGG | + | chr1.4:2395975-2395994 | MS.gene062705:CDS | 30.0% | |
| AGAAGAAAAACATTGGCATA+AGG | - | chr1.4:2397310-2397329 | None:intergenic | 30.0% | |
| ATTGTGCCTCTTCATTTAAA+AGG | + | chr1.4:2396004-2396023 | MS.gene062705:CDS | 30.0% | |
| CAATACACATAACCATTCAT+GGG | - | chr1.4:2396130-2396149 | None:intergenic | 30.0% | |
| CATGAATGGTTATGTGTATT+GGG | + | chr1.4:2396129-2396148 | MS.gene062705:CDS | 30.0% | |
| CTTATTCAATTTCACAATCC+AGG | - | chr1.4:2397148-2397167 | None:intergenic | 30.0% | |
| GCATATGACTTAAATTAACC+TGG | + | chr1.4:2396242-2396261 | MS.gene062705:intron | 30.0% | |
| TGAACTGTAAAATACAGGTA+TGG | - | chr1.4:2396478-2396497 | None:intergenic | 30.0% | |
| TTTCTACAATCACCTTTAAG+AGG | + | chr1.4:2397537-2397556 | MS.gene062705:CDS | 30.0% | |
| ! | CACATGATAGTGAAAAAAGA+AGG | + | chr1.4:2397445-2397464 | MS.gene062705:CDS | 30.0% |
| ! | GCTTTGAATCAGATATTGAT+TGG | + | chr1.4:2396949-2396968 | MS.gene062705:intron | 30.0% |
| ! | TACCTGTATTTTACAGTTCA+TGG | + | chr1.4:2396478-2396497 | MS.gene062705:intron | 30.0% |
| !!! | AATAACTTTTAGCCTTATGC+CGG | + | chr1.4:2397215-2397234 | MS.gene062705:intron | 30.0% |
| !!! | GTCTTTAGGATATTCTTTTG+CGG | + | chr1.4:2396849-2396868 | MS.gene062705:intron | 30.0% |
| !!! | TCTTTAGGATATTCTTTTGC+GGG | + | chr1.4:2396850-2396869 | MS.gene062705:intron | 30.0% |
| AAAGTAAATTCAGCTAGCCA+TGG | + | chr1.4:2396061-2396080 | MS.gene062705:CDS | 35.0% | |
| AATAACGAAAAACGAGTCAC+CGG | - | chr1.4:2396037-2396056 | None:intergenic | 35.0% | |
| ACACTGTCAATCAATCGTAA+TGG | + | chr1.4:2396324-2396343 | MS.gene062705:intron | 35.0% | |
| ACATATGCTACAAGCTTACA+GGG | + | chr1.4:2396719-2396738 | MS.gene062705:CDS | 35.0% | |
| ACTACATTTGAGAAAAAGCC+AGG | - | chr1.4:2396263-2396282 | None:intergenic | 35.0% | |
| AGCACTAAGAATTTCTTCTG+TGG | + | chr1.4:2397401-2397420 | MS.gene062705:CDS | 35.0% | |
| AGGGAAATCAATTCCAACTT+GGG | + | chr1.4:2396738-2396757 | MS.gene062705:CDS | 35.0% | |
| ATCTATTAACCGTTCCTTCA+AGG | + | chr1.4:2397599-2397618 | MS.gene062705:CDS | 35.0% | |
| ATGCATGATCCATATCACAT+GGG | - | chr1.4:2397088-2397107 | None:intergenic | 35.0% | |
| ATGGTTAGAGGTTACTGAAT+AGG | + | chr1.4:2396983-2397002 | MS.gene062705:intron | 35.0% | |
| CAATTCCAACTTGGGTAAAT+CGG | + | chr1.4:2396746-2396765 | MS.gene062705:CDS | 35.0% | |
| CACCATGAACTGTAAAATAC+AGG | - | chr1.4:2396483-2396502 | None:intergenic | 35.0% | |
| CACTAAGAATTTCTTCTGTG+GGG | + | chr1.4:2397403-2397422 | MS.gene062705:CDS | 35.0% | |
| CATGGTGTAGAATATGCATT+TGG | + | chr1.4:2396496-2396515 | MS.gene062705:CDS | 35.0% | |
| CCAATACACATAACCATTCA+TGG | - | chr1.4:2396131-2396150 | None:intergenic | 35.0% | |
| CCATGAATGGTTATGTGTAT+TGG | + | chr1.4:2396128-2396147 | MS.gene062705:CDS | 35.0% | |
| CGTTAAGGAGTAGAGTAATT+AGG | - | chr1.4:2397264-2397283 | None:intergenic | 35.0% | |
| GAAAAACATTGGCATAAGGT+TGG | - | chr1.4:2397306-2397325 | None:intergenic | 35.0% | |
| GAAGAAATTCTTAGTGCTTC+TGG | - | chr1.4:2397399-2397418 | None:intergenic | 35.0% | |
| GATGATAAACAGCCTCTTAA+AGG | - | chr1.4:2397552-2397571 | None:intergenic | 35.0% | |
| GCACTAAGAATTTCTTCTGT+GGG | + | chr1.4:2397402-2397421 | MS.gene062705:CDS | 35.0% | |
| GGTCAATTGACTGATTGAAA+TGG | + | chr1.4:2397171-2397190 | MS.gene062705:intron | 35.0% | |
| TACATCTTTGAATCCTGTTC+AGG | + | chr1.4:2396609-2396628 | MS.gene062705:CDS | 35.0% | |
| TATTGACACTTTGTGATGAC+AGG | + | chr1.4:2397351-2397370 | MS.gene062705:intron | 35.0% | |
| TCTGATTCAAAGCAATAGCA+AGG | - | chr1.4:2396942-2396961 | None:intergenic | 35.0% | |
| TTCAGGAAGTCGATATTCAT+CGG | + | chr1.4:2396583-2396602 | MS.gene062705:CDS | 35.0% | |
| ! | AAACATCACACACACAGTTT+TGG | - | chr1.4:2396906-2396925 | None:intergenic | 35.0% |
| ! | AGATAAACTGGAGTTTTTCC+AGG | - | chr1.4:2396088-2396107 | None:intergenic | 35.0% |
| ! | TTTGAATCCTGTTCAGGTTA+GGG | + | chr1.4:2396615-2396634 | MS.gene062705:CDS | 35.0% |
| !!! | CTTTAGGATATTCTTTTGCG+GGG | + | chr1.4:2396851-2396870 | MS.gene062705:intron | 35.0% |
| AAAAAGTTCATCGCCACTAC+CGG | - | chr1.4:2397237-2397256 | None:intergenic | 40.0% | |
| AATCGGAGTGAAATAGATCC+TGG | + | chr1.4:2397127-2397146 | MS.gene062705:intron | 40.0% | |
| AATGGTTATGTGTATTGGGC+CGG | + | chr1.4:2396133-2396152 | MS.gene062705:CDS | 40.0% | |
| AGAGTGATAGATACCAAGAC+CGG | - | chr1.4:2396155-2396174 | None:intergenic | 40.0% | |
| ATCATCAAAGTGGCCATCAT+GGG | + | chr1.4:2397566-2397585 | MS.gene062705:CDS | 40.0% | |
| CAGGGAAATCAATTCCAACT+TGG | + | chr1.4:2396737-2396756 | MS.gene062705:CDS | 40.0% | |
| CATGCATGATCCATATCACA+TGG | - | chr1.4:2397089-2397108 | None:intergenic | 40.0% | |
| CATGCTCTGTCTCTTAATCT+TGG | + | chr1.4:2396220-2396239 | MS.gene062705:intron | 40.0% | |
| CTATCATGTGCCTCATGATT+AGG | - | chr1.4:2397435-2397454 | None:intergenic | 40.0% | |
| GACATATGCTACAAGCTTAC+AGG | + | chr1.4:2396718-2396737 | MS.gene062705:CDS | 40.0% | |
| GAGGCTGTTTATCATCAAAG+TGG | + | chr1.4:2397556-2397575 | MS.gene062705:CDS | 40.0% | |
| GATCGCATTCTGAGCAAAAT+CGG | + | chr1.4:2397110-2397129 | MS.gene062705:intron | 40.0% | |
| TATCATCAAAGTGGCCATCA+TGG | + | chr1.4:2397565-2397584 | MS.gene062705:CDS | 40.0% | |
| TATGACTTGACACCCATGAA+TGG | + | chr1.4:2396115-2396134 | MS.gene062705:CDS | 40.0% | |
| TGTGAGTGTGCAAACTACAA+CGG | + | chr1.4:2396649-2396668 | MS.gene062705:CDS | 40.0% | |
| TTAACCGTTCCTTCAAGGAA+AGG | + | chr1.4:2397604-2397623 | MS.gene062705:CDS | 40.0% | |
| ! | ACATTGGCATAAGGTTGGTT+TGG | - | chr1.4:2397301-2397320 | None:intergenic | 40.0% |
| ! | CTTTGAATCCTGTTCAGGTT+AGG | + | chr1.4:2396614-2396633 | MS.gene062705:CDS | 40.0% |
| ! | GATTTGCTCAATTCCCATGA+TGG | - | chr1.4:2397582-2397601 | None:intergenic | 40.0% |
| ! | TGTTGCAACCTCTAGTCTTT+AGG | + | chr1.4:2396835-2396854 | MS.gene062705:intron | 40.0% |
| ! | TTTTGCGGGGAAGGAATAAA+AGG | + | chr1.4:2396864-2396883 | MS.gene062705:intron | 40.0% |
| !! | GGTGTCGAAGGTATGATTTT+AGG | + | chr1.4:2396175-2396194 | MS.gene062705:intron | 40.0% |
| !!! | ATCACACACACAGTTTTGGA+TGG | - | chr1.4:2396902-2396921 | None:intergenic | 40.0% |
| !!! | GTGTTTTTGAGGTTGAACCT+CGG | + | chr1.4:2396542-2396561 | MS.gene062705:CDS | 40.0% |
| ACCTCAAAAACACCGCTTGT+TGG | - | chr1.4:2396535-2396554 | None:intergenic | 45.0% | |
| ACTTCCTGAACTTGAAGCCT+GGG | - | chr1.4:2396573-2396592 | None:intergenic | 45.0% | |
| ATGAACTCCCTAACCTGAAC+AGG | - | chr1.4:2396625-2396644 | None:intergenic | 45.0% | |
| CCTCAAAAACACCGCTTGTT+GGG | - | chr1.4:2396534-2396553 | None:intergenic | 45.0% | |
| CTTACCAGTCCCATGTGATA+TGG | + | chr1.4:2397076-2397095 | MS.gene062705:intron | 45.0% | |
| GGTCTTGGTATCTATCACTC+TGG | + | chr1.4:2396154-2396173 | MS.gene062705:CDS | 45.0% | |
| TGATCCATATCACATGGGAC+TGG | - | chr1.4:2397083-2397102 | None:intergenic | 45.0% | |
| ! | ACCTCTAACCATCTAGCTTC+AGG | - | chr1.4:2396975-2396994 | None:intergenic | 45.0% |
| ! | AGGATATTCTTTTGCGGGGA+AGG | + | chr1.4:2396855-2396874 | MS.gene062705:intron | 45.0% |
| ! | ATCTATCACTCTGGTGTCGA+AGG | + | chr1.4:2396163-2396182 | MS.gene062705:CDS | 45.0% |
| ! | TGTTCAGGTTAGGGAGTTCA+TGG | + | chr1.4:2396624-2396643 | MS.gene062705:CDS | 45.0% |
| !! | ATAAGGTTGGTTTGGTGGCT+AGG | - | chr1.4:2397293-2397312 | None:intergenic | 45.0% |
| !! | GTAAATCGGCTTGCTAAGCT+AGG | + | chr1.4:2396760-2396779 | MS.gene062705:CDS | 45.0% |
| !! | TTGATTGGCCTGAAGCTAGA+TGG | + | chr1.4:2396964-2396983 | MS.gene062705:intron | 45.0% |
| !! | TTGGCATAAGGTTGGTTTGG+TGG | - | chr1.4:2397298-2397317 | None:intergenic | 45.0% |
| !!! | TTTTAGCCTTATGCCGGTAG+TGG | + | chr1.4:2397221-2397240 | MS.gene062705:intron | 45.0% |
| AATTCAGCTAGCCATGGACC+TGG | + | chr1.4:2396067-2396086 | MS.gene062705:CDS | 50.0% | |
| GACTTCCTGAACTTGAAGCC+TGG | - | chr1.4:2396574-2396593 | None:intergenic | 50.0% | |
| GCCTGAAGCTAGATGGTTAG+AGG | + | chr1.4:2396971-2396990 | MS.gene062705:intron | 50.0% | |
| GCTCATGACTACCCAACAAG+CGG | + | chr1.4:2396520-2396539 | MS.gene062705:CDS | 50.0% | |
| GGGGCATGATCCTAATCATG+AGG | + | chr1.4:2397422-2397441 | MS.gene062705:CDS | 50.0% | |
| TATGTGTATTGGGCCGGTCT+TGG | + | chr1.4:2396139-2396158 | MS.gene062705:CDS | 50.0% | |
| ! | AATGCCCAGGCTTCAAGTTC+AGG | + | chr1.4:2396566-2396585 | MS.gene062705:CDS | 50.0% |
| ! | CTGGAGTTTTTCCAGGTCCA+TGG | - | chr1.4:2396081-2396100 | None:intergenic | 50.0% |
| ! | GCAAGCCGATTTACCCAAGT+TGG | - | chr1.4:2396754-2396773 | None:intergenic | 50.0% |
| !! | CCCAACAAGCGGTGTTTTTG+AGG | + | chr1.4:2396531-2396550 | MS.gene062705:CDS | 50.0% |
| TCATCGCCACTACCGGCATA+AGG | - | chr1.4:2397230-2397249 | None:intergenic | 55.0% | |
| !! | AGGTTGGTTTGGTGGCTAGG+TGG | - | chr1.4:2397290-2397309 | None:intergenic | 55.0% |
| !! | TTGGTTTGGTGGCTAGGTGG+AGG | - | chr1.4:2397287-2397306 | None:intergenic | 55.0% |
| GTTGAACCTCGGCAATGCCC+AGG | + | chr1.4:2396553-2396572 | MS.gene062705:CDS | 60.0% | |
| ! | TTGAAGCCTGGGCATTGCCG+AGG | - | chr1.4:2396562-2396581 | None:intergenic | 60.0% |
| !! | GTGGCTAGGTGGAGGCGTTA+AGG | - | chr1.4:2397279-2397298 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2395971 | 2397629 | 2395971 | ID=MS.gene062705 |
| chr1.4 | mRNA | 2395971 | 2397629 | 2395971 | ID=MS.gene062705.t1;Parent=MS.gene062705 |
| chr1.4 | exon | 2395971 | 2396184 | 2395971 | ID=MS.gene062705.t1.exon1;Parent=MS.gene062705.t1 |
| chr1.4 | CDS | 2395971 | 2396184 | 2395971 | ID=cds.MS.gene062705.t1;Parent=MS.gene062705.t1 |
| chr1.4 | exon | 2396494 | 2396781 | 2396494 | ID=MS.gene062705.t1.exon2;Parent=MS.gene062705.t1 |
| chr1.4 | CDS | 2396494 | 2396781 | 2396494 | ID=cds.MS.gene062705.t1;Parent=MS.gene062705.t1 |
| chr1.4 | exon | 2397373 | 2397629 | 2397373 | ID=MS.gene062705.t1.exon3;Parent=MS.gene062705.t1 |
| chr1.4 | CDS | 2397373 | 2397629 | 2397373 | ID=cds.MS.gene062705.t1;Parent=MS.gene062705.t1 |
| Gene Sequence |
| Protein sequence |
