Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062719.t1 | RHN77417.1 | 97.8 | 232 | 5 | 0 | 1 | 232 | 3 | 234 | 1.30E-119 | 439.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062719.t1 | Q09463 | 48.8 | 123 | 52 | 4 | 26 | 147 | 20 | 132 | 3.1e-26 | 120.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062719.t1 | A0A072VF61 | 97.8 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 9.1e-120 | 439.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41663 | MS.gene062719 | PPI |
| MS.gene013177 | MS.gene062719 | PPI |
| MS.gene06250 | MS.gene062719 | PPI |
| MS.gene055526 | MS.gene062719 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062719.t1 | MTR_1g021895 | 99.138 | 232 | 2 | 0 | 1 | 232 | 1 | 232 | 8.87e-173 | 474 |
| MS.gene062719.t1 | MTR_5g019300 | 56.067 | 239 | 95 | 4 | 1 | 231 | 1 | 237 | 1.47e-77 | 233 |
| MS.gene062719.t1 | MTR_8g465910 | 33.186 | 226 | 120 | 9 | 19 | 230 | 34 | 242 | 3.13e-30 | 112 |
| MS.gene062719.t1 | MTR_2g090325 | 52.222 | 90 | 37 | 2 | 21 | 110 | 10 | 93 | 8.04e-30 | 110 |
| MS.gene062719.t1 | MTR_2g090330 | 48.958 | 96 | 44 | 2 | 22 | 112 | 22 | 117 | 1.44e-28 | 106 |
| MS.gene062719.t1 | MTR_2g090330 | 48.958 | 96 | 44 | 2 | 22 | 112 | 25 | 120 | 1.67e-28 | 105 |
| MS.gene062719.t1 | MTR_7g093390 | 51.163 | 86 | 40 | 1 | 30 | 115 | 170 | 253 | 5.23e-28 | 110 |
| MS.gene062719.t1 | MTR_2g090295 | 50.000 | 94 | 39 | 2 | 25 | 110 | 35 | 128 | 3.94e-27 | 104 |
| MS.gene062719.t1 | MTR_1g054210 | 41.379 | 116 | 65 | 2 | 3 | 115 | 93 | 208 | 7.70e-27 | 103 |
| MS.gene062719.t1 | MTR_1g054280 | 47.191 | 89 | 44 | 3 | 25 | 111 | 71 | 158 | 1.41e-25 | 100 |
| MS.gene062719.t1 | MTR_1g054260 | 38.843 | 121 | 64 | 2 | 7 | 117 | 64 | 184 | 1.27e-24 | 97.1 |
| MS.gene062719.t1 | MTR_4g088870 | 38.406 | 138 | 67 | 5 | 30 | 149 | 32 | 169 | 4.00e-24 | 95.5 |
| MS.gene062719.t1 | MTR_4g029440 | 38.793 | 116 | 64 | 2 | 30 | 138 | 126 | 241 | 2.37e-23 | 97.4 |
| MS.gene062719.t1 | MTR_2g013550 | 52.857 | 70 | 26 | 1 | 26 | 88 | 23 | 92 | 2.81e-23 | 94.4 |
| MS.gene062719.t1 | MTR_4g029440 | 38.793 | 116 | 64 | 2 | 30 | 138 | 132 | 247 | 2.81e-23 | 97.4 |
| MS.gene062719.t1 | MTR_4g088875 | 48.889 | 90 | 35 | 3 | 30 | 108 | 31 | 120 | 3.94e-23 | 94.0 |
| MS.gene062719.t1 | MTR_1g054465 | 42.308 | 104 | 46 | 3 | 19 | 108 | 40 | 143 | 4.31e-23 | 92.8 |
| MS.gene062719.t1 | MTR_2g061230 | 38.636 | 88 | 53 | 1 | 30 | 116 | 107 | 194 | 2.82e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062719.t1 | AT1G19310 | 67.347 | 196 | 47 | 6 | 30 | 215 | 21 | 209 | 8.77e-85 | 251 |
| MS.gene062719.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
| MS.gene062719.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
| MS.gene062719.t1 | AT2G23780 | 55.760 | 217 | 86 | 5 | 20 | 231 | 16 | 227 | 3.82e-79 | 237 |
| MS.gene062719.t1 | AT1G74990 | 55.639 | 133 | 56 | 2 | 20 | 151 | 7 | 137 | 1.88e-48 | 156 |
| MS.gene062719.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene062719.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene062719.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene062719.t1 | AT4G03510 | 31.624 | 234 | 135 | 7 | 10 | 230 | 26 | 247 | 4.49e-32 | 117 |
| MS.gene062719.t1 | AT4G27470 | 44.828 | 116 | 51 | 3 | 25 | 127 | 37 | 152 | 4.67e-27 | 104 |
| MS.gene062719.t1 | AT4G28270 | 46.875 | 96 | 32 | 3 | 28 | 110 | 17 | 106 | 1.88e-25 | 99.0 |
| MS.gene062719.t1 | AT2G42030 | 45.055 | 91 | 47 | 2 | 25 | 115 | 134 | 221 | 3.83e-25 | 102 |
| MS.gene062719.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene062719.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene062719.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene062719.t1 | AT3G58030 | 45.055 | 91 | 47 | 3 | 25 | 115 | 132 | 219 | 1.70e-23 | 98.2 |
| MS.gene062719.t1 | AT2G44410 | 40.659 | 91 | 51 | 2 | 28 | 116 | 121 | 210 | 3.11e-19 | 85.9 |
Find 76 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAATTGGTTCCTTTATA+TGG | 0.186055 | 1.4:+2570144 | MS.gene062719:CDS |
| TCAGGTGGAGGTGCAGTTTC+AGG | 0.199841 | 1.4:-2570246 | None:intergenic |
| GGAGCTGCTGGTTTCCCTTA+TGG | 0.211929 | 1.4:+2570450 | MS.gene062719:CDS |
| CCAAATCCATGTTGAGAAAA+AGG | 0.224751 | 1.4:-2570276 | None:intergenic |
| GAGCTGCTGGTTTCCCTTAT+GGG | 0.235535 | 1.4:+2570451 | MS.gene062719:CDS |
| TTTGGATTCACAGGTGGATT+AGG | 0.251366 | 1.4:+2570294 | MS.gene062719:CDS |
| TTCACATTTGCTGCCGGATT+TGG | 0.272552 | 1.4:+2570354 | MS.gene062719:CDS |
| TACAGATGGCAAGTGGGTTT+GGG | 0.276615 | 1.4:+2569905 | None:intergenic |
| GCTGCCGGATTTGGTGGATT+GGG | 0.286886 | 1.4:+2570363 | MS.gene062719:CDS |
| TTGGATTCACAGGTGGATTA+GGG | 0.303936 | 1.4:+2570295 | MS.gene062719:CDS |
| GATGATTGAGGAGGAGAAAT+TGG | 0.306323 | 1.4:+2570131 | MS.gene062719:CDS |
| CCGGCAACAACTGCAAGATT+TGG | 0.331916 | 1.4:+2570327 | MS.gene062719:CDS |
| TGACCACACAAAGTAATAAT+AGG | 0.332316 | 1.4:-2570033 | None:intergenic |
| TTACAGATGGCAAGTGGGTT+TGG | 0.332494 | 1.4:+2569904 | None:intergenic |
| TGCTGCCGGATTTGGTGGAT+TGG | 0.350270 | 1.4:+2570362 | MS.gene062719:CDS |
| CCAAATCTTGCAGTTGTTGC+CGG | 0.353767 | 1.4:-2570327 | None:intergenic |
| ATGCAACTGAAAGTTAAATA+AGG | 0.360551 | 1.4:-2570400 | None:intergenic |
| GTTGGCCTTGTCTTTACAAA+TGG | 0.380746 | 1.4:+2570064 | MS.gene062719:CDS |
| TCCGAGGTCGAAATCTATTC+CGG | 0.384427 | 1.4:+2570188 | MS.gene062719:CDS |
| AGAAATTGGTTCCTTTATAT+GGG | 0.388973 | 1.4:+2570145 | MS.gene062719:CDS |
| GTCTTTCCTCTCCCATATAA+AGG | 0.393313 | 1.4:-2570156 | None:intergenic |
| GCCATGTATGGTGGAGCTGC+TGG | 0.395626 | 1.4:+2570438 | MS.gene062719:CDS |
| TACTCGAGTAAGGAGGGCTT+GGG | 0.406878 | 1.4:-2569948 | None:intergenic |
| CTGCCGGATTTGGTGGATTG+GGG | 0.407237 | 1.4:+2570364 | MS.gene062719:CDS |
| CGGCAACAACTGCAAGATTT+GGG | 0.413932 | 1.4:+2570328 | MS.gene062719:CDS |
| TCAATCATCGCTTTACAAAC+CGG | 0.418409 | 1.4:-2570117 | None:intergenic |
| TTTCACGGTGGGGCCATGTA+TGG | 0.430081 | 1.4:+2570426 | MS.gene062719:CDS |
| TTATTATTATTACTCGAGTA+AGG | 0.430340 | 1.4:-2569958 | None:intergenic |
| CAACATGGATTTGGATTCAC+AGG | 0.439413 | 1.4:+2570285 | MS.gene062719:CDS |
| AATAATAATAACAGTGATGC+TGG | 0.448158 | 1.4:+2569970 | MS.gene062719:CDS |
| ACATTTGCTGCCGGATTTGG+TGG | 0.448518 | 1.4:+2570357 | MS.gene062719:CDS |
| TTACTCGAGTAAGGAGGGCT+TGG | 0.452550 | 1.4:-2569949 | None:intergenic |
| CTCCCAGTCACGAGAATGCC+CGG | 0.453449 | 1.4:+2570098 | MS.gene062719:CDS |
| CCGAGGTCGAAATCTATTCC+GGG | 0.463757 | 1.4:+2570189 | MS.gene062719:CDS |
| AAACCGGGCATTCTCGTGAC+TGG | 0.466413 | 1.4:-2570101 | None:intergenic |
| TTATTTAACTTTCAGTTGCA+TGG | 0.466871 | 1.4:+2570402 | MS.gene062719:CDS |
| AATGCATTAGAAAACCCATA+AGG | 0.474862 | 1.4:-2570465 | None:intergenic |
| GTGTGGTACTTGCTTTACTT+TGG | 0.475767 | 1.4:+2570580 | MS.gene062719:CDS |
| GATCCTATTATTACTTTGTG+TGG | 0.482342 | 1.4:+2570030 | MS.gene062719:CDS |
| ATGCATTAGAAAACCCATAA+GGG | 0.492861 | 1.4:-2570464 | None:intergenic |
| TTGGTTCCTTTATATGGGAG+AGG | 0.500872 | 1.4:+2570150 | MS.gene062719:CDS |
| GGGAATTTCACATTTGCTGC+CGG | 0.503544 | 1.4:+2570348 | MS.gene062719:CDS |
| ACCAGCAGCTCCACCATACA+TGG | 0.508328 | 1.4:-2570439 | None:intergenic |
| AATATCCCTCATCGTCCTGC+CGG | 0.511349 | 1.4:+2570216 | MS.gene062719:CDS |
| CACGGTGGGGCCATGTATGG+TGG | 0.514031 | 1.4:+2570429 | MS.gene062719:CDS |
| AAAGGATTTGATTCAGGTGG+AGG | 0.516952 | 1.4:-2570258 | None:intergenic |
| TGCCGGATTTGGTGGATTGG+GGG | 0.524202 | 1.4:+2570365 | MS.gene062719:CDS |
| TATCCTCTGCACACAGGTCA+AGG | 0.531811 | 1.4:+2570510 | MS.gene062719:CDS |
| GTTTCAGGTCTCTGACCGGC+AGG | 0.546908 | 1.4:-2570231 | None:intergenic |
| TATTATTACTCGAGTAAGGA+GGG | 0.550496 | 1.4:-2569954 | None:intergenic |
| TGCAGTTTCAGGTCTCTGAC+CGG | 0.558086 | 1.4:-2570235 | None:intergenic |
| GGATTCACAGGTGGATTAGG+GGG | 0.558493 | 1.4:+2570297 | MS.gene062719:CDS |
| CAATCATCGCTTTACAAACC+GGG | 0.560492 | 1.4:-2570116 | None:intergenic |
| CATGGATTTGGATTCACAGG+TGG | 0.560706 | 1.4:+2570288 | MS.gene062719:CDS |
| ACAGATGGCAAGTGGGTTTG+GGG | 0.562002 | 1.4:+2569906 | None:intergenic |
| CTCTGACCGGCAGGACGATG+AGG | 0.563898 | 1.4:-2570222 | None:intergenic |
| AACAAGATTATTATCTGAAG+AGG | 0.566850 | 1.4:+2570535 | MS.gene062719:CDS |
| AACCGGGCATTCTCGTGACT+GGG | 0.572439 | 1.4:-2570100 | None:intergenic |
| ACTCGAGTAAGGAGGGCTTG+GGG | 0.581186 | 1.4:-2569947 | None:intergenic |
| AACTGAAAGTTAAATAAGGA+TGG | 0.582621 | 1.4:-2570396 | None:intergenic |
| TTATTATTACTCGAGTAAGG+AGG | 0.589072 | 1.4:-2569955 | None:intergenic |
| GCCGGATTTGGTGGATTGGG+GGG | 0.591932 | 1.4:+2570366 | MS.gene062719:CDS |
| CTCGAGTAAGGAGGGCTTGG+GGG | 0.592036 | 1.4:-2569946 | None:intergenic |
| TGCCCTTGACCTGTGTGCAG+AGG | 0.596436 | 1.4:-2570513 | None:intergenic |
| ATCCTCTGCACACAGGTCAA+GGG | 0.610816 | 1.4:+2570511 | MS.gene062719:CDS |
| TCTGACCGGCAGGACGATGA+GGG | 0.614884 | 1.4:-2570221 | None:intergenic |
| CCCGGAATAGATTTCGACCT+CGG | 0.616864 | 1.4:-2570189 | None:intergenic |
| TGGATTCACAGGTGGATTAG+GGG | 0.620475 | 1.4:+2570296 | MS.gene062719:CDS |
| GGTTTGGGGAATCAACAAGC+AGG | 0.622199 | 1.4:+2569920 | MS.gene062719:CDS |
| CATAGATATCCTCTGCACAC+AGG | 0.625097 | 1.4:+2570504 | MS.gene062719:CDS |
| CGATGAGGGATATTAACACC+CGG | 0.632199 | 1.4:-2570207 | None:intergenic |
| GGTTTGTAAAGCGATGATTG+AGG | 0.642603 | 1.4:+2570119 | MS.gene062719:CDS |
| TTGTAAAGCGATGATTGAGG+AGG | 0.645599 | 1.4:+2570122 | MS.gene062719:CDS |
| TGAAGCCATTTGTAAAGACA+AGG | 0.646514 | 1.4:-2570069 | None:intergenic |
| GCAGAGGATATCTATGAACA+TGG | 0.651368 | 1.4:-2570497 | None:intergenic |
| GAAAGACTTCAACTGATCCG+AGG | 0.691424 | 1.4:+2570172 | MS.gene062719:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTACTCGAGTA+AGG | - | chr1.4:2569961-2569980 | None:intergenic | 20.0% |
| ! | AACAAGATTATTATCTGAAG+AGG | + | chr1.4:2570535-2570554 | MS.gene062719:CDS | 25.0% |
| ! | AACTGAAAGTTAAATAAGGA+TGG | - | chr1.4:2570399-2570418 | None:intergenic | 25.0% |
| ! | AATAATAATAACAGTGATGC+TGG | + | chr1.4:2569970-2569989 | MS.gene062719:CDS | 25.0% |
| ! | ATGCAACTGAAAGTTAAATA+AGG | - | chr1.4:2570403-2570422 | None:intergenic | 25.0% |
| !! | AGAAATTGGTTCCTTTATAT+GGG | + | chr1.4:2570145-2570164 | MS.gene062719:CDS | 25.0% |
| !! | TTATTTAACTTTCAGTTGCA+TGG | + | chr1.4:2570402-2570421 | MS.gene062719:CDS | 25.0% |
| !!! | GATGTTTGTTATTTTTTGTG+TGG | + | chr1.4:2570563-2570582 | MS.gene062719:CDS | 25.0% |
| AATGCATTAGAAAACCCATA+AGG | - | chr1.4:2570468-2570487 | None:intergenic | 30.0% | |
| ATGCATTAGAAAACCCATAA+GGG | - | chr1.4:2570467-2570486 | None:intergenic | 30.0% | |
| GATCCTATTATTACTTTGTG+TGG | + | chr1.4:2570030-2570049 | MS.gene062719:CDS | 30.0% | |
| TATTATTACTCGAGTAAGGA+GGG | - | chr1.4:2569957-2569976 | None:intergenic | 30.0% | |
| TGACCACACAAAGTAATAAT+AGG | - | chr1.4:2570036-2570055 | None:intergenic | 30.0% | |
| TGAGAAAAAGGATTTGATTC+AGG | - | chr1.4:2570267-2570286 | None:intergenic | 30.0% | |
| TTATTATTACTCGAGTAAGG+AGG | - | chr1.4:2569958-2569977 | None:intergenic | 30.0% | |
| ! | GAGAAATTGGTTCCTTTATA+TGG | + | chr1.4:2570144-2570163 | MS.gene062719:CDS | 30.0% |
| ! | TCAAATCCTTTTTCTCAACA+TGG | + | chr1.4:2570270-2570289 | MS.gene062719:CDS | 30.0% |
| CCAAATCCATGTTGAGAAAA+AGG | - | chr1.4:2570279-2570298 | None:intergenic | 35.0% | |
| GAAAAAGGATTTGATTCAGG+TGG | - | chr1.4:2570264-2570283 | None:intergenic | 35.0% | |
| TCAATCATCGCTTTACAAAC+CGG | - | chr1.4:2570120-2570139 | None:intergenic | 35.0% | |
| TGAAGCCATTTGTAAAGACA+AGG | - | chr1.4:2570072-2570091 | None:intergenic | 35.0% | |
| ! | CCTTTTTCTCAACATGGATT+TGG | + | chr1.4:2570276-2570295 | MS.gene062719:CDS | 35.0% |
| ! | GGGTTTTCTAATGCATTTCA+CGG | + | chr1.4:2570471-2570490 | MS.gene062719:CDS | 35.0% |
| ! | TTTCAGTTGCATGGTTTTCA+CGG | + | chr1.4:2570411-2570430 | MS.gene062719:CDS | 35.0% |
| ! | TTTTCTAATGCATTTCACGG+TGG | + | chr1.4:2570474-2570493 | MS.gene062719:CDS | 35.0% |
| AAAGGATTTGATTCAGGTGG+AGG | - | chr1.4:2570261-2570280 | None:intergenic | 40.0% | |
| CAACATGGATTTGGATTCAC+AGG | + | chr1.4:2570285-2570304 | MS.gene062719:CDS | 40.0% | |
| CAATCATCGCTTTACAAACC+GGG | - | chr1.4:2570119-2570138 | None:intergenic | 40.0% | |
| GATGATTGAGGAGGAGAAAT+TGG | + | chr1.4:2570131-2570150 | MS.gene062719:CDS | 40.0% | |
| GCAGAGGATATCTATGAACA+TGG | - | chr1.4:2570500-2570519 | None:intergenic | 40.0% | |
| GGTTTGTAAAGCGATGATTG+AGG | + | chr1.4:2570119-2570138 | MS.gene062719:CDS | 40.0% | |
| GTCTTTCCTCTCCCATATAA+AGG | - | chr1.4:2570159-2570178 | None:intergenic | 40.0% | |
| GTGTGGTACTTGCTTTACTT+TGG | + | chr1.4:2570580-2570599 | MS.gene062719:CDS | 40.0% | |
| TTGGTTCCTTTATATGGGAG+AGG | + | chr1.4:2570150-2570169 | MS.gene062719:CDS | 40.0% | |
| TTGTAAAGCGATGATTGAGG+AGG | + | chr1.4:2570122-2570141 | MS.gene062719:CDS | 40.0% | |
| ! | TGTGTGGTCATCTTTTCTGT+TGG | + | chr1.4:2570046-2570065 | MS.gene062719:CDS | 40.0% |
| ! | TTTGGATTCACAGGTGGATT+AGG | + | chr1.4:2570294-2570313 | MS.gene062719:CDS | 40.0% |
| !! | GTTGGCCTTGTCTTTACAAA+TGG | + | chr1.4:2570064-2570083 | MS.gene062719:CDS | 40.0% |
| !! | TTGGATTCACAGGTGGATTA+GGG | + | chr1.4:2570295-2570314 | MS.gene062719:CDS | 40.0% |
| CATAGATATCCTCTGCACAC+AGG | + | chr1.4:2570504-2570523 | MS.gene062719:CDS | 45.0% | |
| CATGGATTTGGATTCACAGG+TGG | + | chr1.4:2570288-2570307 | MS.gene062719:CDS | 45.0% | |
| CCAAATCTTGCAGTTGTTGC+CGG | - | chr1.4:2570330-2570349 | None:intergenic | 45.0% | |
| CGATGAGGGATATTAACACC+CGG | - | chr1.4:2570210-2570229 | None:intergenic | 45.0% | |
| CGGCAACAACTGCAAGATTT+GGG | + | chr1.4:2570328-2570347 | MS.gene062719:CDS | 45.0% | |
| GAAAGACTTCAACTGATCCG+AGG | + | chr1.4:2570172-2570191 | MS.gene062719:CDS | 45.0% | |
| TCCGAGGTCGAAATCTATTC+CGG | + | chr1.4:2570188-2570207 | MS.gene062719:CDS | 45.0% | |
| ! | AGTTGCATGGTTTTCACGGT+GGG | + | chr1.4:2570415-2570434 | MS.gene062719:CDS | 45.0% |
| ! | GGGAATTTCACATTTGCTGC+CGG | + | chr1.4:2570348-2570367 | MS.gene062719:CDS | 45.0% |
| ! | TGGATTAGGGGGATTTGTAC+CGG | + | chr1.4:2570308-2570327 | MS.gene062719:CDS | 45.0% |
| ! | TTCACATTTGCTGCCGGATT+TGG | + | chr1.4:2570354-2570373 | MS.gene062719:CDS | 45.0% |
| !! | TGGATTCACAGGTGGATTAG+GGG | + | chr1.4:2570296-2570315 | MS.gene062719:CDS | 45.0% |
| AATATCCCTCATCGTCCTGC+CGG | + | chr1.4:2570216-2570235 | MS.gene062719:CDS | 50.0% | |
| ATCCTCTGCACACAGGTCAA+GGG | + | chr1.4:2570511-2570530 | MS.gene062719:CDS | 50.0% | |
| CCCGGAATAGATTTCGACCT+CGG | - | chr1.4:2570192-2570211 | None:intergenic | 50.0% | |
| CCGAGGTCGAAATCTATTCC+GGG | + | chr1.4:2570189-2570208 | MS.gene062719:CDS | 50.0% | |
| CCGGCAACAACTGCAAGATT+TGG | + | chr1.4:2570327-2570346 | MS.gene062719:CDS | 50.0% | |
| GGTTTGGGGAATCAACAAGC+AGG | + | chr1.4:2569920-2569939 | MS.gene062719:CDS | 50.0% | |
| TACTCGAGTAAGGAGGGCTT+GGG | - | chr1.4:2569951-2569970 | None:intergenic | 50.0% | |
| TATCCTCTGCACACAGGTCA+AGG | + | chr1.4:2570510-2570529 | MS.gene062719:CDS | 50.0% | |
| TTACTCGAGTAAGGAGGGCT+TGG | - | chr1.4:2569952-2569971 | None:intergenic | 50.0% | |
| ! | ACATTTGCTGCCGGATTTGG+TGG | + | chr1.4:2570357-2570376 | MS.gene062719:CDS | 50.0% |
| ! | CAGTTGCATGGTTTTCACGG+TGG | + | chr1.4:2570414-2570433 | MS.gene062719:CDS | 50.0% |
| ! | GTTGCATGGTTTTCACGGTG+GGG | + | chr1.4:2570416-2570435 | MS.gene062719:CDS | 50.0% |
| ! | TGCAGTTTCAGGTCTCTGAC+CGG | - | chr1.4:2570238-2570257 | None:intergenic | 50.0% |
| !! | GAGCTGCTGGTTTCCCTTAT+GGG | + | chr1.4:2570451-2570470 | MS.gene062719:CDS | 50.0% |
| !! | GGATTCACAGGTGGATTAGG+GGG | + | chr1.4:2570297-2570316 | MS.gene062719:CDS | 50.0% |
| AAACCGGGCATTCTCGTGAC+TGG | - | chr1.4:2570104-2570123 | None:intergenic | 55.0% | |
| AACCGGGCATTCTCGTGACT+GGG | - | chr1.4:2570103-2570122 | None:intergenic | 55.0% | |
| ACCAGCAGCTCCACCATACA+TGG | - | chr1.4:2570442-2570461 | None:intergenic | 55.0% | |
| ACTCGAGTAAGGAGGGCTTG+GGG | - | chr1.4:2569950-2569969 | None:intergenic | 55.0% | |
| TCCCCCCAATCCACCAAATC+CGG | - | chr1.4:2570370-2570389 | None:intergenic | 55.0% | |
| TTTCACGGTGGGGCCATGTA+TGG | + | chr1.4:2570426-2570445 | MS.gene062719:CDS | 55.0% | |
| ! | TCAGGTGGAGGTGCAGTTTC+AGG | - | chr1.4:2570249-2570268 | None:intergenic | 55.0% |
| !! | CTGCCGGATTTGGTGGATTG+GGG | + | chr1.4:2570364-2570383 | MS.gene062719:CDS | 55.0% |
| !! | GCTGCCGGATTTGGTGGATT+GGG | + | chr1.4:2570363-2570382 | MS.gene062719:CDS | 55.0% |
| !! | GGAGCTGCTGGTTTCCCTTA+TGG | + | chr1.4:2570450-2570469 | MS.gene062719:CDS | 55.0% |
| !! | TGCCGGATTTGGTGGATTGG+GGG | + | chr1.4:2570365-2570384 | MS.gene062719:CDS | 55.0% |
| !! | TGCTGCCGGATTTGGTGGAT+TGG | + | chr1.4:2570362-2570381 | MS.gene062719:CDS | 55.0% |
| CTCCCAGTCACGAGAATGCC+CGG | + | chr1.4:2570098-2570117 | MS.gene062719:CDS | 60.0% | |
| CTCGAGTAAGGAGGGCTTGG+GGG | - | chr1.4:2569949-2569968 | None:intergenic | 60.0% | |
| TCTGACCGGCAGGACGATGA+GGG | - | chr1.4:2570224-2570243 | None:intergenic | 60.0% | |
| TGCCCTTGACCTGTGTGCAG+AGG | - | chr1.4:2570516-2570535 | None:intergenic | 60.0% | |
| ! | GCCATGTATGGTGGAGCTGC+TGG | + | chr1.4:2570438-2570457 | MS.gene062719:CDS | 60.0% |
| ! | GTTTCAGGTCTCTGACCGGC+AGG | - | chr1.4:2570234-2570253 | None:intergenic | 60.0% |
| !! | GCCGGATTTGGTGGATTGGG+GGG | + | chr1.4:2570366-2570385 | MS.gene062719:CDS | 60.0% |
| CACGGTGGGGCCATGTATGG+TGG | + | chr1.4:2570429-2570448 | MS.gene062719:CDS | 65.0% | |
| CTCTGACCGGCAGGACGATG+AGG | - | chr1.4:2570225-2570244 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2569910 | 2570608 | 2569910 | ID=MS.gene062719 |
| chr1.4 | mRNA | 2569910 | 2570608 | 2569910 | ID=MS.gene062719.t1;Parent=MS.gene062719 |
| chr1.4 | exon | 2569910 | 2570608 | 2569910 | ID=MS.gene062719.t1.exon1;Parent=MS.gene062719.t1 |
| chr1.4 | CDS | 2569910 | 2570608 | 2569910 | ID=cds.MS.gene062719.t1;Parent=MS.gene062719.t1 |
| Gene Sequence |
| Protein sequence |
