AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062811.t1 MTR_2g071620 96.128 594 13 2 2 595 185 768 0.0 1192
MS.gene062811.t1 MTR_5g032380 56.966 323 136 1 272 594 405 724 3.10e-127 397
MS.gene062811.t1 MTR_1g014680 51.913 366 173 2 230 594 121 484 2.37e-126 391
MS.gene062811.t1 MTR_5g066000 54.294 326 147 2 269 594 520 843 5.85e-122 385
MS.gene062811.t1 MTR_3g100480 52.439 328 155 1 267 594 560 886 1.55e-120 383
MS.gene062811.t1 MTR_3g100480 48.045 358 155 2 267 594 560 916 3.86e-114 367
MS.gene062811.t1 MTR_4g130940 41.558 308 170 7 292 595 93 394 7.02e-67 233
MS.gene062811.t1 MTR_4g130940 41.558 308 170 7 292 595 93 394 1.63e-66 233
MS.gene062811.t1 MTR_2g070390 40.323 310 178 6 290 595 21 327 2.43e-60 213
MS.gene062811.t1 MTR_6g022290 37.942 311 180 9 287 594 25 325 1.60e-55 197
MS.gene062811.t1 MTR_6g022310 38.019 313 177 8 287 594 123 423 7.07e-54 194
MS.gene062811.t1 MTR_8g067060 34.194 310 181 9 292 595 204 496 5.00e-48 176
MS.gene062811.t1 MTR_6g022300 36.013 311 186 9 287 594 63 363 5.54e-48 177
MS.gene062811.t1 MTR_8g471100 34.194 310 181 9 292 595 213 505 7.67e-48 176
MS.gene062811.t1 MTR_5g030360 34.839 310 180 8 292 595 155 448 5.46e-46 173
MS.gene062811.t1 MTR_5g430360 34.122 296 173 8 306 595 1 280 2.00e-40 155
MS.gene062811.t1 MTR_8g064910 31.329 316 188 12 292 595 55 353 1.78e-34 135
MS.gene062811.t1 MTR_8g090190 29.855 345 192 10 292 594 24 360 1.48e-31 126
MS.gene062811.t1 MTR_1g014260 27.684 354 203 10 289 595 176 523 8.19e-30 125
MS.gene062811.t1 MTR_3g087140 30.172 348 187 12 292 594 24 360 1.53e-28 117
MS.gene062811.t1 MTR_4g115880 25.693 397 196 13 289 595 192 579 5.32e-28 119
MS.gene062811.t1 MTR_0279s0020 28.435 313 194 10 288 594 2 290 2.07e-26 110
MS.gene062811.t1 MTR_0279s0020 28.383 303 187 10 298 594 3 281 5.54e-25 105
MS.gene062811.t1 MTR_4g111860 28.395 324 188 13 292 594 88 388 1.72e-21 97.8
MS.gene062811.t1 MTR_3g108660 29.712 313 183 14 290 589 106 394 2.01e-20 96.3
MS.gene062811.t1 MTR_3g108660 29.712 313 183 14 290 589 106 394 2.45e-20 96.3
MS.gene062811.t1 MTR_1g010040 27.575 301 180 11 290 576 106 382 5.03e-19 92.0
MS.gene062811.t1 MTR_1g010040 27.575 301 180 11 290 576 106 382 5.27e-19 92.0
MS.gene062811.t1 MTR_2g060050 27.778 360 194 15 290 594 181 529 5.51e-19 90.9
MS.gene062811.t1 MTR_2g087710 33.562 146 91 3 452 594 717 859 3.24e-17 86.3
MS.gene062811.t1 MTR_1g077980 33.333 147 91 4 452 594 765 908 1.15e-15 81.3
MS.gene062811.t1 MTR_7g106570 33.108 148 90 4 452 594 742 885 2.62e-14 76.6
MS.gene062811.t1 MTR_3g083600 35.385 130 63 4 483 594 941 1067 3.69e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062811.t1 AT1G17110 56.780 590 178 9 8 594 226 741 0.0 642
MS.gene062811.t1 AT1G17110 56.780 590 178 9 8 594 226 741 0.0 642
MS.gene062811.t1 AT1G17110 56.397 594 178 10 8 594 226 745 0.0 635
MS.gene062811.t1 AT2G24640 51.685 356 172 0 240 595 123 478 2.87e-127 389
MS.gene062811.t1 AT4G31670 53.211 327 153 0 269 595 146 472 1.44e-124 381
MS.gene062811.t1 AT2G24640 55.882 306 135 0 290 595 3 308 9.45e-122 369
MS.gene062811.t1 AT5G65450 52.888 329 148 4 269 595 308 631 5.82e-111 348
MS.gene062811.t1 AT5G65450 52.888 329 148 4 269 595 327 650 1.53e-110 348
MS.gene062811.t1 AT4G24560 47.853 326 168 2 269 594 521 844 2.16e-103 335
MS.gene062811.t1 AT5G57990 38.111 307 181 6 292 595 108 408 6.58e-62 220
MS.gene062811.t1 AT3G14400 40.190 316 174 6 290 595 23 333 2.90e-60 212
MS.gene062811.t1 AT5G46740 35.048 311 186 10 292 594 164 466 2.08e-40 157
MS.gene062811.t1 AT4G17895 35.048 311 182 12 292 595 177 474 1.44e-38 151
MS.gene062811.t1 AT5G46740 34.091 264 162 8 336 594 1 257 6.91e-30 124
MS.gene062811.t1 AT4G39910 28.775 351 192 10 292 594 24 364 4.85e-29 119
MS.gene062811.t1 AT2G22310 29.747 316 187 8 292 579 24 332 9.08e-29 118
MS.gene062811.t1 AT4G30890 27.249 389 210 15 263 594 176 548 4.49e-24 107
MS.gene062811.t1 AT4G30890 27.249 389 210 15 263 594 176 548 4.49e-24 107
MS.gene062811.t1 AT4G30890 27.249 389 210 15 263 594 176 548 4.49e-24 107
MS.gene062811.t1 AT5G10790 26.776 366 204 10 286 595 43 400 2.15e-23 103
MS.gene062811.t1 AT2G22310 30.040 253 144 7 353 579 55 300 5.97e-23 100
MS.gene062811.t1 AT2G22310 30.040 253 144 7 353 579 50 295 6.48e-23 100
MS.gene062811.t1 AT5G10790 26.776 366 204 10 286 595 172 529 1.08e-22 102
MS.gene062811.t1 AT3G49600 29.195 298 178 9 290 576 105 380 5.25e-21 98.2
MS.gene062811.t1 AT3G49600 29.195 298 178 9 290 576 105 380 5.25e-21 98.2
MS.gene062811.t1 AT3G49600 29.195 298 178 9 290 576 105 380 5.61e-21 98.2
MS.gene062811.t1 AT1G04860 33.333 159 84 5 450 594 804 954 1.13e-16 84.3
MS.gene062811.t1 AT4G10590 34.694 147 89 4 452 594 748 891 1.54e-15 80.9
MS.gene062811.t1 AT4G10590 34.694 147 89 4 452 594 748 891 1.54e-15 80.9
MS.gene062811.t1 AT4G10590 34.694 147 89 4 452 594 748 891 1.54e-15 80.9
MS.gene062811.t1 AT4G10590 34.694 147 89 4 452 594 748 891 1.54e-15 80.9
MS.gene062811.t1 AT4G10570 34.014 147 90 4 452 594 749 892 1.60e-14 77.4
MS.gene062811.t1 AT5G22030 31.293 147 94 4 452 594 765 908 1.96e-14 77.4
MS.gene062811.t1 AT5G22030 31.293 147 94 4 452 594 723 866 2.05e-14 77.0
MS.gene062811.t1 AT2G32780 33.077 130 66 4 483 594 954 1080 1.62e-13 74.3
MS.gene062811.t1 AT2G32780 31.325 166 105 4 287 446 198 360 3.54e-11 67.0
MS.gene062811.t1 AT1G32850 31.973 147 93 4 452 594 734 877 6.63e-13 72.4

Find 122 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTTTCTTCTCTATTTC+AGG 0.077237 2.3:-24903806 None:intergenic
GGACCTGACGTTGGAGATTT+TGG 0.114925 2.3:+24905760 MS.gene062811:CDS
GTGTTTCTCTGTTGGATTTA+TGG 0.149461 2.3:-24903178 None:intergenic
CTTGTCGTTTATTTGCTTTA+TGG 0.159477 2.3:+24904668 MS.gene062811:CDS
TCCTCTGAAACGACAGTTAA+AGG 0.199211 2.3:+24903689 MS.gene062811:CDS
ACCTGTTCCCGCAATTTAAA+AGG 0.210045 2.3:-24904505 None:intergenic
CTTGATTACATTTCCTCCTT+TGG 0.250033 2.3:-24903624 None:intergenic
GGAATCATATCTAGCATTTC+AGG 0.264195 2.3:-24907093 None:intergenic
AAAGTTGTTTCTTGCAATCT+AGG 0.270720 2.3:-24905561 None:intergenic
TCACCCGTCCCCGTCATAAA+AGG 0.283425 2.3:-24907114 None:intergenic
TGTTTCTCTGTTGGATTTAT+GGG 0.283596 2.3:-24903177 None:intergenic
GTTTACTTCCCCTGAAGATT+TGG 0.296077 2.3:+24905817 MS.gene062811:CDS
AAAACAATGGTCAAGATGTT+AGG 0.305543 2.3:-24906173 None:intergenic
CAATGGAGTAAGATCTAAAA+AGG 0.310526 2.3:+24904098 MS.gene062811:CDS
ACTTTCATACAACATACTTT+TGG 0.331855 2.3:+24905579 MS.gene062811:CDS
AAGATCAATTCTAATGGCTT+TGG 0.337440 2.3:+24903431 MS.gene062811:CDS
ATCTACAAGGCAATTGGTTC+AGG 0.340346 2.3:+24907229 MS.gene062811:CDS
TGTCATCAGGAAGGAAGATA+TGG 0.349067 2.3:+24907045 MS.gene062811:intron
TCCCTTTCTTCTCTATTTCA+GGG 0.363850 2.3:-24903805 None:intergenic
GAAGGTTGAGAACCGTTAAA+TGG 0.366169 2.3:-24903134 None:intergenic
ACACTGAATGCATCCTTCTC+TGG 0.376607 2.3:+24907183 MS.gene062811:CDS
TTAGAAAACCTGGCCTTTGA+TGG 0.386417 2.3:-24903740 None:intergenic
CGCAATTTAAAAGGCCCCTT+GGG 0.394841 2.3:-24904496 None:intergenic
AGAAAGGTATGAGAACATTA+TGG 0.395546 2.3:+24905739 MS.gene062811:CDS
ATCGATGCAATCAATATGTT+TGG 0.398807 2.3:+24905509 MS.gene062811:CDS
TTGTACTAACTCGGTTCATC+AGG 0.407488 2.3:-24903833 None:intergenic
GCCATTAGAATTGATCTTTG+AGG 0.413039 2.3:-24903426 None:intergenic
TCTTCGCCGTGTTTCTCTGT+TGG 0.416792 2.3:-24903186 None:intergenic
GCTCATTATGCAGAAGTTGC+TGG 0.421833 2.3:+24903961 MS.gene062811:intron
CTTTGGTGATTTAGAAAACC+TGG 0.430491 2.3:-24903750 None:intergenic
ATCACCTGATTTACTAGTAC+TGG 0.435940 2.3:-24907631 None:intergenic
TTTCTCCTAGTAGGATACTT+TGG 0.436192 2.3:+24904887 MS.gene062811:CDS
AAACAATGGTCAAGATGTTA+GGG 0.437144 2.3:-24906172 None:intergenic
GCAACCAGTACTAGTAAATC+AGG 0.447892 2.3:+24907627 MS.gene062811:CDS
ACCTCAAAGATCAATTCTAA+TGG 0.454981 2.3:+24903425 MS.gene062811:CDS
TTATGAAAATGATGGGTTTG+AGG 0.458674 2.3:+24904037 MS.gene062811:CDS
CCGCAATTTAAAAGGCCCCT+TGG 0.460763 2.3:-24904497 None:intergenic
TTTGTGTTGCGCTGCTTCAT+CGG 0.463853 2.3:-24903663 None:intergenic
TGAAAGATCTACAAGGCAAT+TGG 0.463988 2.3:+24907223 MS.gene062811:CDS
CTCCCTTTGCATGGTATCAA+TGG 0.467061 2.3:+24903997 MS.gene062811:CDS
ACCCTGAAATAGAGAAGAAA+GGG 0.469333 2.3:+24903804 MS.gene062811:CDS
TCAATATGTTTGGAGGGACT+TGG 0.470672 2.3:+24905519 MS.gene062811:CDS
GGGCTCCTCTTTCTCCTAGT+AGG 0.473287 2.3:+24904878 MS.gene062811:CDS
CAAAGGAGGAAATGTAATCA+AGG 0.473859 2.3:+24903625 MS.gene062811:CDS
TCTCTGTTGGATTTATGGGA+AGG 0.474031 2.3:-24903173 None:intergenic
CAACATGGGTGATGGAAGTC+AGG 0.476278 2.3:+24904930 MS.gene062811:CDS
GGGACTTGGTGGTGAGAGAA+AGG 0.487005 2.3:+24905533 MS.gene062811:CDS
CGGTTCTCAACCTTCCACTT+TGG 0.490220 2.3:+24903142 MS.gene062811:CDS
GCGCTGCTTCATCGGAATGA+TGG 0.491961 2.3:-24903655 None:intergenic
TTGCTTTCTAGCTCGAACAT+AGG 0.495442 2.3:-24906132 None:intergenic
TTGTAAAGCGACCACTTCTC+AGG 0.496979 2.3:+24903250 MS.gene062811:CDS
TACCGGACTTATGAAAATGA+TGG 0.498132 2.3:+24904029 MS.gene062811:CDS
TGGTGGTCGTCTTCAATCCA+AGG 0.499218 2.3:+24905599 MS.gene062811:CDS
TTTCTCCGTCCAAATCTTCA+GGG 0.499331 2.3:-24905826 None:intergenic
AGTATCCTACTAGGAGAAAG+AGG 0.503562 2.3:-24904883 None:intergenic
CGTCACATCCATCAAAGGCC+AGG 0.510421 2.3:+24903732 MS.gene062811:CDS
AACCCAAAATCTCCAACGTC+AGG 0.511558 2.3:-24905763 None:intergenic
ATCAATGGCGTTACAAGTAC+CGG 0.514326 2.3:+24904012 MS.gene062811:CDS
CGCCATTGATACCATGCAAA+GGG 0.515402 2.3:-24903999 None:intergenic
ATCTTTACAAAGTCTTCGTA+AGG 0.516110 2.3:-24904446 None:intergenic
GACCCTGAAATAGAGAAGAA+AGG 0.521095 2.3:+24903803 MS.gene062811:CDS
GACGTCTTTGATGTTGACTT+TGG 0.523299 2.3:-24903767 None:intergenic
TCCTTTAACTGTCGTTTCAG+AGG 0.525680 2.3:-24903690 None:intergenic
GACAGTAGCAGAAGCGGCCA+TGG 0.533910 2.3:-24903102 None:intergenic
GTCATCAGGAAGGAAGATAT+GGG 0.533957 2.3:+24907046 MS.gene062811:intron
ACCGGACTTATGAAAATGAT+GGG 0.537956 2.3:+24904030 MS.gene062811:CDS
ATGTGCCAAAGTATCCTACT+AGG 0.544982 2.3:-24904892 None:intergenic
GGAGACATTTATGAGACAGA+AGG 0.556723 2.3:+24903271 MS.gene062811:CDS
TAAAGCAAATAAACGACAAG+AGG 0.557528 2.3:-24904665 None:intergenic
TCTTACTCCATTGCTTTCTG+AGG 0.561992 2.3:-24904088 None:intergenic
AAAGGAGGAAATGTAATCAA+GGG 0.562836 2.3:+24903626 MS.gene062811:CDS
GATGCAATCAATATGTTTGG+AGG 0.563366 2.3:+24905512 MS.gene062811:CDS
GTTTATACATATGAACAAGA+TGG 0.564233 2.3:+24903455 MS.gene062811:CDS
ATTAATTGCAACATGGGTGA+TGG 0.570259 2.3:+24904922 MS.gene062811:CDS
AAGTCTTTGGCATATTCCCA+AGG 0.571055 2.3:+24904480 MS.gene062811:CDS
CTGGCCTTTGATGGATGTGA+CGG 0.573069 2.3:-24903731 None:intergenic
AAAATCGACAGTAGCAGAAG+CGG 0.582213 2.3:-24903108 None:intergenic
CGTAGCATTAATTGCAACAT+GGG 0.584740 2.3:+24904916 MS.gene062811:CDS
TAAGCACTGCAAGACAGCAT+TGG 0.586727 2.3:-24904630 None:intergenic
TGACAGGTTGTGCTAAAGAT+TGG 0.587747 2.3:+24904806 MS.gene062811:intron
ACTGTAGTCATGAGTCAGAA+AGG 0.587796 2.3:+24905723 MS.gene062811:CDS
AGCGCTGCGAACAATGATGA+AGG 0.590039 2.3:+24903572 MS.gene062811:CDS
GTAAATCAGGTGATGTCAGA+AGG 0.591063 2.3:+24907640 MS.gene062811:CDS
GGAGAAAATATGTACAGATG+TGG 0.593046 2.3:+24905842 MS.gene062811:CDS
GAAACAAACGTCGTTACCAA+AGG 0.593205 2.3:+24903608 MS.gene062811:CDS
AAATAGCAATGATTCTGTGA+TGG 0.596604 2.3:+24903394 MS.gene062811:CDS
TAGCAATGATTCTGTGATGG+AGG 0.598668 2.3:+24903397 MS.gene062811:CDS
CATAAATGTCTCCTGAGAAG+TGG 0.601363 2.3:-24903261 None:intergenic
TTGGTGTCTCATGTGTGAGT+TGG 0.602054 2.3:+24904825 MS.gene062811:CDS
GCGTAGCATTAATTGCAACA+TGG 0.603299 2.3:+24904915 MS.gene062811:CDS
ATATGTTTGGAGGGACTTGG+TGG 0.607552 2.3:+24905522 MS.gene062811:CDS
GGTCTTCTCTCCAAAGTGGA+AGG 0.608112 2.3:-24903152 None:intergenic
ACTTCCCCTGAAGATTTGGA+CGG 0.609506 2.3:+24905821 MS.gene062811:CDS
AAAGCCGTCACATCCATCAA+AGG 0.610743 2.3:+24903727 MS.gene062811:CDS
ATGCAATCAATATGTTTGGA+GGG 0.612672 2.3:+24905513 MS.gene062811:CDS
ACGGCATAAAGCACGTACAA+TGG 0.616475 2.3:-24907144 None:intergenic
GAAACACGGCGAAGAGATAG+CGG 0.616494 2.3:+24903194 MS.gene062811:CDS
ATATGCCAAAGACTTCACTC+TGG 0.616860 2.3:-24904472 None:intergenic
ACAAACGTCGTTACCAAAGG+AGG 0.617230 2.3:+24903611 MS.gene062811:CDS
CTGAAACCTCTTCAAAACAA+TGG 0.618348 2.3:-24906186 None:intergenic
AAAATATGTACAGATGTGGA+AGG 0.619494 2.3:+24905846 MS.gene062811:CDS
CGAAACATAATGTCCAGAGA+AGG 0.619572 2.3:-24907196 None:intergenic
CTAGCGTCCTCAGAAAGCAA+TGG 0.620523 2.3:+24904081 MS.gene062811:CDS
AGAAGTACTCTCCCTTTGCA+TGG 0.621302 2.3:+24903988 MS.gene062811:CDS
AGTCTTTGGCATATTCCCAA+GGG 0.622923 2.3:+24904481 MS.gene062811:CDS
GGAAGGTCTTCTCTCCAAAG+TGG 0.632983 2.3:-24903156 None:intergenic
GACAGTTAAAGGAAGTGCAA+AGG 0.637115 2.3:+24903700 MS.gene062811:CDS
ACGCCATTGATACCATGCAA+AGG 0.637774 2.3:-24904000 None:intergenic
TTCTCCGTCCAAATCTTCAG+GGG 0.639839 2.3:-24905825 None:intergenic
TTCAAGAAACACAATGGACG+AGG 0.645160 2.3:+24903478 MS.gene062811:CDS
CATATATCTTATTCTATACG+AGG 0.649544 2.3:+24907665 MS.gene062811:CDS
AAGGAGGAAATGTAATCAAG+GGG 0.653678 2.3:+24903627 MS.gene062811:CDS
GCATAAAGCACGTACAATGG+AGG 0.658123 2.3:-24907141 None:intergenic
GAACATTATGGACCTGACGT+TGG 0.660997 2.3:+24905751 MS.gene062811:CDS
GTCTTTGGCATATTCCCAAG+GGG 0.668134 2.3:+24904482 MS.gene062811:CDS
TGTGTCGAGGTGCACAACAA+CGG 0.669479 2.3:-24907163 None:intergenic
TCGTACGTGAAAGATCTACA+AGG 0.676704 2.3:+24907216 MS.gene062811:CDS
AGATGGTTCAAGAAACACAA+TGG 0.678855 2.3:+24903472 MS.gene062811:CDS
AGGATGCATTCAGTGTGTCG+AGG 0.688340 2.3:-24907176 None:intergenic
AACAATGGTCAAGATGTTAG+GGG 0.706218 2.3:-24906171 None:intergenic
GTTCAGGATAGATGATACCG+AGG 0.720915 2.3:+24907245 MS.gene062811:CDS
ATAAATCCAACAGAGAAACA+CGG 0.722226 2.3:+24903180 MS.gene062811:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAAATTATAAATAATCA+TGG + chr2.3:24904215-24904234 MS.gene062811:intron 10.0%
!!! AGAAATATTTTAGTTTTAAA+AGG - chr2.3:24906477-24906496 None:intergenic 10.0%
!!! TTTTTGTTTAGTAATTTAAT+TGG + chr2.3:24906676-24906695 MS.gene062811:intron 10.0%
!! AAAAAAAAAATATGCATTTG+AGG - chr2.3:24904761-24904780 None:intergenic 15.0%
!! ATATTAACAAAACATTAAGT+TGG - chr2.3:24907511-24907530 None:intergenic 15.0%
!! TATTACTACGAAATAATTAT+GGG + chr2.3:24906527-24906546 MS.gene062811:intron 15.0%
!! TTAAATTTCAAGCAAATTAT+TGG - chr2.3:24907602-24907621 None:intergenic 15.0%
!! TTTGTAATTTGAATATATTC+AGG - chr2.3:24906604-24906623 None:intergenic 15.0%
!!! AAAAAAGATAGAATCTTTTT+AGG + chr2.3:24905118-24905137 MS.gene062811:intron 15.0%
!!! ATATCATTTGTTGTTTATAT+AGG + chr2.3:24905475-24905494 MS.gene062811:intron 15.0%
!!! ATTTTACTTTGATATCAAAT+TGG + chr2.3:24903301-24903320 MS.gene062811:intron 15.0%
!!! CTAATATCTTGTATATTTTA+TGG + chr2.3:24907441-24907460 MS.gene062811:intron 15.0%
!!! TTATTTTTTTTATCTTTGCT+TGG + chr2.3:24906238-24906257 MS.gene062811:intron 15.0%
!!! TTGTAATTTTAATACATTCA+AGG + chr2.3:24906800-24906819 MS.gene062811:intron 15.0%
!!! TTTTTTATGCATTTTGAATT+AGG + chr2.3:24906102-24906121 MS.gene062811:intron 15.0%
!! AAAAAGTGAGATATCTTAAT+TGG - chr2.3:24906084-24906103 None:intergenic 20.0%
!! AAAATTTGTCAAAAACTGAA+TGG - chr2.3:24907488-24907507 None:intergenic 20.0%
!! AAATCACCTTAAAAATTCAT+GGG - chr2.3:24904962-24904981 None:intergenic 20.0%
!! ATGAAATTCAAACCATTATT+TGG - chr2.3:24906979-24906998 None:intergenic 20.0%
!! ATTATTTGGTATCTAAGTAT+GGG - chr2.3:24906965-24906984 None:intergenic 20.0%
!! CCAAATTCTTTAATTATTAG+TGG - chr2.3:24905214-24905233 None:intergenic 20.0%
!! CCACTAATAATTAAAGAATT+TGG + chr2.3:24905211-24905230 MS.gene062811:intron 20.0%
!! GTATTACTACGAAATAATTA+TGG + chr2.3:24906526-24906545 MS.gene062811:intron 20.0%
!! TAAAAAGGCAAAGAATATAA+AGG + chr2.3:24904113-24904132 MS.gene062811:CDS 20.0%
!! TCAAAAAAGATGTAAAGTTT+CGG - chr2.3:24905662-24905681 None:intergenic 20.0%
!! TCATTATAAACATGAGATAT+TGG - chr2.3:24906917-24906936 None:intergenic 20.0%
!!! ACAACATCGATTTTTAATAA+TGG - chr2.3:24904384-24904403 None:intergenic 20.0%
!!! ATAATTACTTTTCAAGTAGA+AGG - chr2.3:24904357-24904376 None:intergenic 20.0%
!!! ATGAATTTTTAAGGTGATTT+GGG + chr2.3:24904962-24904981 MS.gene062811:intron 20.0%
!!! GAATTTTTTAAAACTTTACC+CGG + chr2.3:24906380-24906399 MS.gene062811:intron 20.0%
!!! GATTCTATCTTTTTTACAAT+AGG - chr2.3:24905113-24905132 None:intergenic 20.0%
!!! TAATTTGCTTGAAATTTAAC+AGG + chr2.3:24907603-24907622 MS.gene062811:intron 20.0%
!!! TTTGAAATTTTAATGTCTAC+AGG + chr2.3:24905688-24905707 MS.gene062811:intron 20.0%
! AACACTAGCATTTATATTGA+AGG - chr2.3:24906017-24906036 None:intergenic 25.0%
! AAGACAAGAAATATTTCAAC+GGG - chr2.3:24907019-24907038 None:intergenic 25.0%
! AATATGCATTTGAGGAAAAT+CGG - chr2.3:24904753-24904772 None:intergenic 25.0%
! ACTAACAAAAGACATATTTG+TGG + chr2.3:24906707-24906726 MS.gene062811:intron 25.0%
! ATAACACATGAGGAAAATAA+AGG - chr2.3:24903863-24903882 None:intergenic 25.0%
! ATGACTCAAATATATCGAAA+AGG - chr2.3:24904564-24904583 None:intergenic 25.0%
! ATGGAAACATTACTTCAATT+CGG + chr2.3:24906885-24906904 MS.gene062811:intron 25.0%
! ATTTAATTCATATCCACTGT+CGG - chr2.3:24904293-24904312 None:intergenic 25.0%
! ATTTGACGATTATGTTTGAT+CGG + chr2.3:24904249-24904268 MS.gene062811:intron 25.0%
! CAAAAAAGATGTAAAGTTTC+GGG - chr2.3:24905661-24905680 None:intergenic 25.0%
! CAAAAGTGAACTCAAATTAT+AGG - chr2.3:24903902-24903921 None:intergenic 25.0%
! CAAATCACCTTAAAAATTCA+TGG - chr2.3:24904963-24904982 None:intergenic 25.0%
! CAAATTATTGGTGTGAAATA+TGG - chr2.3:24907590-24907609 None:intergenic 25.0%
! CAAGACAAGAAATATTTCAA+CGG - chr2.3:24907020-24907039 None:intergenic 25.0%
! CATACTTAGATACCAAATAA+TGG + chr2.3:24906964-24906983 MS.gene062811:intron 25.0%
! CATTATTTGGTATCTAAGTA+TGG - chr2.3:24906966-24906985 None:intergenic 25.0%
! GTAAGAGAAAAAAAACATTC+AGG - chr2.3:24907383-24907402 None:intergenic 25.0%
! GTTTATACATATGAACAAGA+TGG + chr2.3:24903455-24903474 MS.gene062811:CDS 25.0%
! TAACACATGAGGAAAATAAA+GGG - chr2.3:24903862-24903881 None:intergenic 25.0%
! TAGGAATATATGCATTAAAG+AGG + chr2.3:24905065-24905084 MS.gene062811:intron 25.0%
! TATAAATGCTAGTGTTACAT+AGG + chr2.3:24906021-24906040 MS.gene062811:intron 25.0%
! TATCAGTACTTAATAGATTG+CGG - chr2.3:24905900-24905919 None:intergenic 25.0%
! TCTAACTTACTCAACTTATT+GGG - chr2.3:24905362-24905381 None:intergenic 25.0%
! TGACTCAAATATATCGAAAA+GGG - chr2.3:24904563-24904582 None:intergenic 25.0%
!! ACTTTCATACAACATACTTT+TGG + chr2.3:24905579-24905598 MS.gene062811:CDS 25.0%
!! AGATATGATTCCTTTTATGA+CGG + chr2.3:24907104-24907123 MS.gene062811:CDS 25.0%
!! TTGTATTTTTCATGAATGAC+AGG + chr2.3:24904790-24904809 MS.gene062811:intron 25.0%
!!! AAAGATAGAATCTTTTTAGG+TGG + chr2.3:24905121-24905140 MS.gene062811:intron 25.0%
!!! ATGATGATTTTGAGAGAAAT+TGG + chr2.3:24904856-24904875 MS.gene062811:CDS 25.0%
!!! CAATCTATTAAGTACTGATA+TGG + chr2.3:24905900-24905919 MS.gene062811:intron 25.0%
!!! CATGAATTTTTAAGGTGATT+TGG + chr2.3:24904961-24904980 MS.gene062811:intron 25.0%
!!! CTTATTGCTATTTATAGCTT+TGG + chr2.3:24906296-24906315 MS.gene062811:intron 25.0%
!!! TACATATGTTTTAAAATGCG+TGG + chr2.3:24905320-24905339 MS.gene062811:intron 25.0%
!!! TGATGATTTTGAGAGAAATT+GGG + chr2.3:24904857-24904876 MS.gene062811:CDS 25.0%
!!! TTCACTTTTGTTCTATGTTA+AGG + chr2.3:24903912-24903931 MS.gene062811:intron 25.0%
!!! TTTAGTTTTAAAAGGTCGTA+TGG - chr2.3:24906469-24906488 None:intergenic 25.0%
AAAACAATGGTCAAGATGTT+AGG - chr2.3:24906176-24906195 None:intergenic 30.0%
AAAATATGTACAGATGTGGA+AGG + chr2.3:24905846-24905865 MS.gene062811:CDS 30.0%
AAACAATGGTCAAGATGTTA+GGG - chr2.3:24906175-24906194 None:intergenic 30.0%
AAAGGAGGAAATGTAATCAA+GGG + chr2.3:24903626-24903645 MS.gene062811:CDS 30.0%
AAATAGCAATGATTCTGTGA+TGG + chr2.3:24903394-24903413 MS.gene062811:CDS 30.0%
AAATCACAGCTCTTGTAAAA+TGG + chr2.3:24906211-24906230 MS.gene062811:intron 30.0%
AAGATCAATTCTAATGGCTT+TGG + chr2.3:24903431-24903450 MS.gene062811:CDS 30.0%
ACACAAGTCAAAATAGGATT+AGG + chr2.3:24905046-24905065 MS.gene062811:intron 30.0%
ACCTCAAAGATCAATTCTAA+TGG + chr2.3:24903425-24903444 MS.gene062811:CDS 30.0%
ACTAAACAAAAACACACTCA+GGG - chr2.3:24906668-24906687 None:intergenic 30.0%
AGATCATTACTACACAGAAA+CGG - chr2.3:24906421-24906440 None:intergenic 30.0%
AGCTACAAACAATATATTGC+CGG - chr2.3:24907314-24907333 None:intergenic 30.0%
AGTTGACTGTATGAATCAAA+TGG - chr2.3:24905394-24905413 None:intergenic 30.0%
ATAAATCCAACAGAGAAACA+CGG + chr2.3:24903180-24903199 MS.gene062811:CDS 30.0%
ATAGCAACTGCAAAATAAAG+AGG - chr2.3:24904609-24904628 None:intergenic 30.0%
ATCGATGCAATCAATATGTT+TGG + chr2.3:24905509-24905528 MS.gene062811:CDS 30.0%
ATCTTTACAAAGTCTTCGTA+AGG - chr2.3:24904449-24904468 None:intergenic 30.0%
ATGCAATCAATATGTTTGGA+GGG + chr2.3:24905513-24905532 MS.gene062811:CDS 30.0%
ATGCATTAAAGAGGACATTA+GGG + chr2.3:24905074-24905093 MS.gene062811:intron 30.0%
ATGTGTTTCGTTAGTTAGTT+TGG - chr2.3:24906734-24906753 None:intergenic 30.0%
CAATGGAGTAAGATCTAAAA+AGG + chr2.3:24904098-24904117 MS.gene062811:CDS 30.0%
CAGTAAAACTACAGTATACT+AGG - chr2.3:24905420-24905439 None:intergenic 30.0%
CTCTAACTTACTCAACTTAT+TGG - chr2.3:24905363-24905382 None:intergenic 30.0%
GTCGAAATAGCATGTTTAAT+TGG + chr2.3:24906043-24906062 MS.gene062811:intron 30.0%
GTGTCAACATTTATACATGT+TGG + chr2.3:24905262-24905281 MS.gene062811:intron 30.0%
TAAACATGAGATATTGGTGA+AGG - chr2.3:24906911-24906930 None:intergenic 30.0%
TAAAGAAAATCACGAGACAA+TGG - chr2.3:24905634-24905653 None:intergenic 30.0%
TAAAGCAAATAAACGACAAG+AGG - chr2.3:24904668-24904687 None:intergenic 30.0%
TACTAAACAAAAACACACTC+AGG - chr2.3:24906669-24906688 None:intergenic 30.0%
TAGCAATAAGAACAATTACC+AGG - chr2.3:24906286-24906305 None:intergenic 30.0%
TAGTAATGATCTAGTATGGT+AGG + chr2.3:24906429-24906448 MS.gene062811:intron 30.0%
TATGCATTAAAGAGGACATT+AGG + chr2.3:24905073-24905092 MS.gene062811:intron 30.0%
TGTGTAGTAATGATCTAGTA+TGG + chr2.3:24906425-24906444 MS.gene062811:intron 30.0%
TGTTTCTCTGTTGGATTTAT+GGG - chr2.3:24903180-24903199 None:intergenic 30.0%
TTTAGTATCAGTGTCGTATT+CGG - chr2.3:24905182-24905201 None:intergenic 30.0%
TTTGCACCAAGAAACAAAAA+TGG + chr2.3:24903533-24903552 MS.gene062811:CDS 30.0%
! AAGATGCCCATGAATTTTTA+AGG + chr2.3:24904953-24904972 MS.gene062811:CDS 30.0%
! AGAAAGGTATGAGAACATTA+TGG + chr2.3:24905739-24905758 MS.gene062811:CDS 30.0%
! ATATGATTCCTTTTATGACG+GGG + chr2.3:24907106-24907125 MS.gene062811:CDS 30.0%
! CAATAAGTTGAGTAAGTTAG+AGG + chr2.3:24905361-24905380 MS.gene062811:intron 30.0%
! CTTGTCGTTTATTTGCTTTA+TGG + chr2.3:24904668-24904687 MS.gene062811:CDS 30.0%
! GATATGATTCCTTTTATGAC+GGG + chr2.3:24907105-24907124 MS.gene062811:CDS 30.0%
! TTCATACAACATACTTTTGG+TGG + chr2.3:24905582-24905601 MS.gene062811:CDS 30.0%
!! AAAGTTGTTTCTTGCAATCT+AGG - chr2.3:24905564-24905583 None:intergenic 30.0%
!! ATGGGTGTAAATTGTCATTT+TGG + chr2.3:24906545-24906564 MS.gene062811:intron 30.0%
!! CATTTTGGTCTCTAAATATG+AGG + chr2.3:24906560-24906579 MS.gene062811:intron 30.0%
!! GATGATTTTGAGAGAAATTG+GGG + chr2.3:24904858-24904877 MS.gene062811:CDS 30.0%
!! GTCGATTTTTCTCCATTTAA+CGG + chr2.3:24903122-24903141 MS.gene062811:CDS 30.0%
!! TAGCTTCCATTTTTGTTTCT+TGG - chr2.3:24903542-24903561 None:intergenic 30.0%
!! TTATGAAAATGATGGGTTTG+AGG + chr2.3:24904037-24904056 MS.gene062811:CDS 30.0%
!! TTGCTATTTATAGCTTTGGT+TGG + chr2.3:24906300-24906319 MS.gene062811:intron 30.0%
!!! TATTTTTTTTACACCGACAG+TGG + chr2.3:24904277-24904296 MS.gene062811:intron 30.0%
!!! TTTTTTTGAGCAAACACTCA+GGG - chr2.3:24906631-24906650 None:intergenic 30.0%
!!! TTTTTTTTGAGCAAACACTC+AGG - chr2.3:24906632-24906651 None:intergenic 30.0%
AAAGGGCAATTGTACTAACT+CGG - chr2.3:24903845-24903864 None:intergenic 35.0%
AACAATGGTCAAGATGTTAG+GGG - chr2.3:24906174-24906193 None:intergenic 35.0%
AAGGAGGAAATGTAATCAAG+GGG + chr2.3:24903627-24903646 MS.gene062811:CDS 35.0%
ACCCTGAAATAGAGAAGAAA+GGG + chr2.3:24903804-24903823 MS.gene062811:CDS 35.0%
ACCGGACTTATGAAAATGAT+GGG + chr2.3:24904030-24904049 MS.gene062811:CDS 35.0%
ACTAACGAAACACATATTCG+AGG + chr2.3:24906739-24906758 MS.gene062811:intron 35.0%
AGATGGTTCAAGAAACACAA+TGG + chr2.3:24903472-24903491 MS.gene062811:CDS 35.0%
ATATCGAAAAGGGACATCAA+GGG - chr2.3:24904553-24904572 None:intergenic 35.0%
ATCACCTGATTTACTAGTAC+TGG - chr2.3:24907634-24907653 None:intergenic 35.0%
ATCAGAGTAATCACTCATCA+TGG - chr2.3:24906858-24906877 None:intergenic 35.0%
ATGAGTGATTACTCTGATTC+TGG + chr2.3:24906860-24906879 MS.gene062811:intron 35.0%
ATTAAGGAACTTGGTTAAGC+AGG + chr2.3:24906349-24906368 MS.gene062811:intron 35.0%
ATTAATTGCAACATGGGTGA+TGG + chr2.3:24904922-24904941 MS.gene062811:CDS 35.0%
CAAAGGAGGAAATGTAATCA+AGG + chr2.3:24903625-24903644 MS.gene062811:CDS 35.0%
CGTAGCATTAATTGCAACAT+GGG + chr2.3:24904916-24904935 MS.gene062811:CDS 35.0%
CTGAAACCTCTTCAAAACAA+TGG - chr2.3:24906189-24906208 None:intergenic 35.0%
CTTAACCAAGTTCCTTAATC+TGG - chr2.3:24906348-24906367 None:intergenic 35.0%
CTTGATTACATTTCCTCCTT+TGG - chr2.3:24903627-24903646 None:intergenic 35.0%
GATGCAATCAATATGTTTGG+AGG + chr2.3:24905512-24905531 MS.gene062811:CDS 35.0%
GCCATTAGAATTGATCTTTG+AGG - chr2.3:24903429-24903448 None:intergenic 35.0%
GCTAAGAAAAGACACATTCA+GGG + chr2.3:24906771-24906790 MS.gene062811:intron 35.0%
GGAGAAAATATGTACAGATG+TGG + chr2.3:24905842-24905861 MS.gene062811:CDS 35.0%
GTAGACACACAAGTCAAAAT+AGG + chr2.3:24905040-24905059 MS.gene062811:intron 35.0%
GTGAAAAGATTGAGAGAGAA+TGG - chr2.3:24904717-24904736 None:intergenic 35.0%
GTGTTTCTCTGTTGGATTTA+TGG - chr2.3:24903181-24903200 None:intergenic 35.0%
TACCGGACTTATGAAAATGA+TGG + chr2.3:24904029-24904048 MS.gene062811:CDS 35.0%
TATATCGAAAAGGGACATCA+AGG - chr2.3:24904554-24904573 None:intergenic 35.0%
TATGGTAGGTCAATTTCATG+TGG + chr2.3:24906443-24906462 MS.gene062811:intron 35.0%
TCACATGAAGATAACACATG+AGG - chr2.3:24903873-24903892 None:intergenic 35.0%
TCCCTTTCTTCTCTATTTCA+GGG - chr2.3:24903808-24903827 None:intergenic 35.0%
TGAAAGATCTACAAGGCAAT+TGG + chr2.3:24907223-24907242 MS.gene062811:CDS 35.0%
TTAAGGAACTTGGTTAAGCA+GGG + chr2.3:24906350-24906369 MS.gene062811:intron 35.0%
TTCCAAAAGCTTTACCTGTT+GGG + chr2.3:24907349-24907368 MS.gene062811:intron 35.0%
TTCCCTTTCTTCTCTATTTC+AGG - chr2.3:24903809-24903828 None:intergenic 35.0%
TTCGTAAGGAAACAACATCT+GGG - chr2.3:24904435-24904454 None:intergenic 35.0%
TTGAGAGAGAATGGAAATAC+AGG - chr2.3:24904708-24904727 None:intergenic 35.0%
TTTCTCCTAGTAGGATACTT+TGG + chr2.3:24904887-24904906 MS.gene062811:CDS 35.0%
! ACCCATCATTTTCATAAGTC+CGG - chr2.3:24904034-24904053 None:intergenic 35.0%
! ATTTTCCAGAGTGAAGTCTT+TGG + chr2.3:24904467-24904486 MS.gene062811:CDS 35.0%
! CTGAATGTGTCTTTTCTTAG+CGG - chr2.3:24906772-24906791 None:intergenic 35.0%
! CTGCAGCATTGAAGATAAAT+AGG - chr2.3:24904995-24905014 None:intergenic 35.0%
! CTTTGGTGATTTAGAAAACC+TGG - chr2.3:24903753-24903772 None:intergenic 35.0%
! TGAATGTGTCTTTTCTTAGC+GGG - chr2.3:24906771-24906790 None:intergenic 35.0%
! TTGTCTTGTTCTATGTCATC+AGG + chr2.3:24907032-24907051 MS.gene062811:intron 35.0%
! TTTAAAACTTTACCCGGATG+TGG + chr2.3:24906386-24906405 MS.gene062811:intron 35.0%
!! CTATTTATAGCTTTGGTTGG+CGG + chr2.3:24906303-24906322 MS.gene062811:intron 35.0%
!!! CATTGTTTTGAAGAGGTTTC+AGG + chr2.3:24906187-24906206 MS.gene062811:CDS 35.0%
!!! TCTTGACCATTGTTTTGAAG+AGG + chr2.3:24906180-24906199 MS.gene062811:CDS 35.0%
!!! TTTTCAAGTAGAAGGACAAC+TGG - chr2.3:24904349-24904368 None:intergenic 35.0%
AAAATCGACAGTAGCAGAAG+CGG - chr2.3:24903111-24903130 None:intergenic 40.0%
AAGGTGTGTCTGATATGTGT+CGG - chr2.3:24905998-24906017 None:intergenic 40.0%
AAGTCTTTGGCATATTCCCA+AGG + chr2.3:24904480-24904499 MS.gene062811:CDS 40.0%
ACAAGGCAACAACATTACCT+CGG - chr2.3:24907265-24907284 None:intergenic 40.0%
ACCTGTTCCCGCAATTTAAA+AGG - chr2.3:24904508-24904527 None:intergenic 40.0%
ACTGTAGTCATGAGTCAGAA+AGG + chr2.3:24905723-24905742 MS.gene062811:CDS 40.0%
AGTATCCTACTAGGAGAAAG+AGG - chr2.3:24904886-24904905 None:intergenic 40.0%
AGTCTTTGGCATATTCCCAA+GGG + chr2.3:24904481-24904500 MS.gene062811:CDS 40.0%
AGTTCCTTAATCTGGAAAGC+CGG - chr2.3:24906340-24906359 None:intergenic 40.0%
ATAAAATGTTACGCAGCGAC+GGG - chr2.3:24907420-24907439 None:intergenic 40.0%
ATATGCCAAAGACTTCACTC+TGG - chr2.3:24904475-24904494 None:intergenic 40.0%
ATCAATGGCGTTACAAGTAC+CGG + chr2.3:24904012-24904031 MS.gene062811:CDS 40.0%
CATAAAATGTTACGCAGCGA+CGG - chr2.3:24907421-24907440 None:intergenic 40.0%
CATAAATGTCTCCTGAGAAG+TGG - chr2.3:24903264-24903283 None:intergenic 40.0%
CATATGTAGCAGTGAAGCTT+CGG - chr2.3:24905308-24905327 None:intergenic 40.0%
CGAAACATAATGTCCAGAGA+AGG - chr2.3:24907199-24907218 None:intergenic 40.0%
CGCTAAGAAAAGACACATTC+AGG + chr2.3:24906770-24906789 MS.gene062811:intron 40.0%
CTTCCAAAAGCTTTACCTGT+TGG + chr2.3:24907348-24907367 MS.gene062811:intron 40.0%
CTTCGTAAGGAAACAACATC+TGG - chr2.3:24904436-24904455 None:intergenic 40.0%
CTTCGTGGTGTGTAATTAAC+CGG + chr2.3:24907292-24907311 MS.gene062811:intron 40.0%
CTTGACTGCAGCAACAATTT+AGG - chr2.3:24903374-24903393 None:intergenic 40.0%
CTTGTTCTATGTCATCAGGA+AGG + chr2.3:24907036-24907055 MS.gene062811:intron 40.0%
GAAACAAACGTCGTTACCAA+AGG + chr2.3:24903608-24903627 MS.gene062811:CDS 40.0%
GAAGGTTGAGAACCGTTAAA+TGG - chr2.3:24903137-24903156 None:intergenic 40.0%
GACCCTGAAATAGAGAAGAA+AGG + chr2.3:24903803-24903822 MS.gene062811:CDS 40.0%
GATTACTCTGATTCTGGTGA+TGG + chr2.3:24906866-24906885 MS.gene062811:intron 40.0%
GCAACCAGTACTAGTAAATC+AGG + chr2.3:24907627-24907646 MS.gene062811:CDS 40.0%
GCAACTGCAAAATAAAGAGG+AGG - chr2.3:24904606-24904625 None:intergenic 40.0%
GCGTAGCATTAATTGCAACA+TGG + chr2.3:24904915-24904934 MS.gene062811:CDS 40.0%
GCTTTCCAGATTAAGGAACT+TGG + chr2.3:24906340-24906359 MS.gene062811:intron 40.0%
GGAGACATTTATGAGACAGA+AGG + chr2.3:24903271-24903290 MS.gene062811:CDS 40.0%
GTAAATCAGGTGATGTCAGA+AGG + chr2.3:24907640-24907659 MS.gene062811:CDS 40.0%
GTCATCAGGAAGGAAGATAT+GGG + chr2.3:24907046-24907065 MS.gene062811:intron 40.0%
GTTTACTTCCCCTGAAGATT+TGG + chr2.3:24905817-24905836 MS.gene062811:CDS 40.0%
TAGCAATGATTCTGTGATGG+AGG + chr2.3:24903397-24903416 MS.gene062811:CDS 40.0%
TCAATATGTTTGGAGGGACT+TGG + chr2.3:24905519-24905538 MS.gene062811:CDS 40.0%
TCGTACGTGAAAGATCTACA+AGG + chr2.3:24907216-24907235 MS.gene062811:CDS 40.0%
TCTCTGTTGGATTTATGGGA+AGG - chr2.3:24903176-24903195 None:intergenic 40.0%
TCTTACTCCATTGCTTTCTG+AGG - chr2.3:24904091-24904110 None:intergenic 40.0%
TGACAGGTTGTGCTAAAGAT+TGG + chr2.3:24904806-24904825 MS.gene062811:intron 40.0%
TGCGTGGAGAAGAACTATAT+AGG + chr2.3:24905336-24905355 MS.gene062811:intron 40.0%
TGTCATCAGGAAGGAAGATA+TGG + chr2.3:24907045-24907064 MS.gene062811:intron 40.0%
TTCAAGAAACACAATGGACG+AGG + chr2.3:24903478-24903497 MS.gene062811:CDS 40.0%
TTGTACTAACTCGGTTCATC+AGG - chr2.3:24903836-24903855 None:intergenic 40.0%
TTTCTCCGTCCAAATCTTCA+GGG - chr2.3:24905829-24905848 None:intergenic 40.0%
! ATCTACAAGGCAATTGGTTC+AGG + chr2.3:24907229-24907248 MS.gene062811:CDS 40.0%
! ATGTGCCAAAGTATCCTACT+AGG - chr2.3:24904895-24904914 None:intergenic 40.0%
! CTAGACATTGTCTTTTGTCC+TGG + chr2.3:24906265-24906284 MS.gene062811:intron 40.0%
! GACAGTTAAAGGAAGTGCAA+AGG + chr2.3:24903700-24903719 MS.gene062811:CDS 40.0%
! TCCTTTAACTGTCGTTTCAG+AGG - chr2.3:24903693-24903712 None:intergenic 40.0%
! TTAGAAAACCTGGCCTTTGA+TGG - chr2.3:24903743-24903762 None:intergenic 40.0%
! TTTTCTCCGTCCAAATCTTC+AGG - chr2.3:24905830-24905849 None:intergenic 40.0%
!! ATTACCGGCTTTCCAGATTA+AGG + chr2.3:24906333-24906352 MS.gene062811:intron 40.0%
!! GACGTCTTTGATGTTGACTT+TGG - chr2.3:24903770-24903789 None:intergenic 40.0%
!! TCCTCTGAAACGACAGTTAA+AGG + chr2.3:24903689-24903708 MS.gene062811:CDS 40.0%
!! TTGCTTTCTAGCTCGAACAT+AGG - chr2.3:24906135-24906154 None:intergenic 40.0%
AAAGCCGTCACATCCATCAA+AGG + chr2.3:24903727-24903746 MS.gene062811:CDS 45.0%
AACAACTCTCGACGCATTCA+AGG + chr2.3:24906831-24906850 MS.gene062811:intron 45.0%
AACCCAAAATCTCCAACGTC+AGG - chr2.3:24905766-24905785 None:intergenic 45.0%
ACAAACGTCGTTACCAAAGG+AGG + chr2.3:24903611-24903630 MS.gene062811:CDS 45.0%
ACACTGAATGCATCCTTCTC+TGG + chr2.3:24907183-24907202 MS.gene062811:CDS 45.0%
ACGCCATTGATACCATGCAA+AGG - chr2.3:24904003-24904022 None:intergenic 45.0%
ACGGCATAAAGCACGTACAA+TGG - chr2.3:24907147-24907166 None:intergenic 45.0%
ACTTCCCCTGAAGATTTGGA+CGG + chr2.3:24905821-24905840 MS.gene062811:CDS 45.0%
ATATGTTTGGAGGGACTTGG+TGG + chr2.3:24905522-24905541 MS.gene062811:CDS 45.0%
CACCACGAAGTTTGCAAACA+AGG - chr2.3:24907282-24907301 None:intergenic 45.0%
CGCAATTTAAAAGGCCCCTT+GGG - chr2.3:24904499-24904518 None:intergenic 45.0%
CGCCATTGATACCATGCAAA+GGG - chr2.3:24904002-24904021 None:intergenic 45.0%
CTCCCTTTGCATGGTATCAA+TGG + chr2.3:24903997-24904016 MS.gene062811:CDS 45.0%
GAACATTATGGACCTGACGT+TGG + chr2.3:24905751-24905770 MS.gene062811:CDS 45.0%
GACAATGGTTACACACACCT+TGG - chr2.3:24905619-24905638 None:intergenic 45.0%
GCAGTGAAGCTTCGGATTAA+AGG - chr2.3:24905300-24905319 None:intergenic 45.0%
GCATAAAGCACGTACAATGG+AGG - chr2.3:24907144-24907163 None:intergenic 45.0%
GCTCATTATGCAGAAGTTGC+TGG + chr2.3:24903961-24903980 MS.gene062811:intron 45.0%
GTCTTTGGCATATTCCCAAG+GGG + chr2.3:24904482-24904501 MS.gene062811:CDS 45.0%
GTTCAGGATAGATGATACCG+AGG + chr2.3:24907245-24907264 MS.gene062811:CDS 45.0%
GTTGGCGGCGTTAAAATTAC+CGG + chr2.3:24906318-24906337 MS.gene062811:intron 45.0%
TTCAGGCAATTTCTCCCAAC+AGG - chr2.3:24907366-24907385 None:intergenic 45.0%
TTCTCCGTCCAAATCTTCAG+GGG - chr2.3:24905828-24905847 None:intergenic 45.0%
TTGTAAAGCGACCACTTCTC+AGG + chr2.3:24903250-24903269 MS.gene062811:CDS 45.0%
TTTGTGTTGCGCTGCTTCAT+CGG - chr2.3:24903666-24903685 None:intergenic 45.0%
! ACGGATTGCATTACCACATC+CGG - chr2.3:24906402-24906421 None:intergenic 45.0%
! CAAGGGGCCTTTTAAATTGC+GGG + chr2.3:24904498-24904517 MS.gene062811:CDS 45.0%
! CCAAGGGGCCTTTTAAATTG+CGG + chr2.3:24904497-24904516 MS.gene062811:CDS 45.0%
! CTCCCAACAGGTAAAGCTTT+TGG - chr2.3:24907354-24907373 None:intergenic 45.0%
! CTTCGGATTAAAGGTGTGTC+TGG - chr2.3:24905291-24905310 None:intergenic 45.0%
! GACCTGACGTTGGAGATTTT+GGG + chr2.3:24905761-24905780 MS.gene062811:CDS 45.0%
! GCCTTTTAAATTGCGGGAAC+AGG + chr2.3:24904504-24904523 MS.gene062811:CDS 45.0%
! TAAGCACTGCAAGACAGCAT+TGG - chr2.3:24904633-24904652 None:intergenic 45.0%
! TGTCTGATATGTGTCGGTGT+TGG - chr2.3:24905992-24906011 None:intergenic 45.0%
! TTGGTGTCTCATGTGTGAGT+TGG + chr2.3:24904825-24904844 MS.gene062811:CDS 45.0%
!! AGAAGTACTCTCCCTTTGCA+TGG + chr2.3:24903988-24904007 MS.gene062811:CDS 45.0%
!! ATTCCTTTTATGACGGGGAC+GGG + chr2.3:24907111-24907130 MS.gene062811:CDS 45.0%
!! GATTCCTTTTATGACGGGGA+CGG + chr2.3:24907110-24907129 MS.gene062811:CDS 45.0%
!! TGACGTTGGAGATTTTGGGT+TGG + chr2.3:24905765-24905784 MS.gene062811:CDS 45.0%
!! TGCCTTGTTTGCAAACTTCG+TGG + chr2.3:24907277-24907296 MS.gene062811:intron 45.0%
!!! GACGTTGGAGATTTTGGGTT+GGG + chr2.3:24905766-24905785 MS.gene062811:CDS 45.0%
AGCGCTGCGAACAATGATGA+AGG + chr2.3:24903572-24903591 MS.gene062811:CDS 50.0%
AGGATGCATTCAGTGTGTCG+AGG - chr2.3:24907179-24907198 None:intergenic 50.0%
CCGCAATTTAAAAGGCCCCT+TGG - chr2.3:24904500-24904519 None:intergenic 50.0%
CGGATTGCATTACCACATCC+GGG - chr2.3:24906401-24906420 None:intergenic 50.0%
CGGTTCTCAACCTTCCACTT+TGG + chr2.3:24903142-24903161 MS.gene062811:CDS 50.0%
CTAGCGTCCTCAGAAAGCAA+TGG + chr2.3:24904081-24904100 MS.gene062811:CDS 50.0%
GAAACACGGCGAAGAGATAG+CGG + chr2.3:24903194-24903213 MS.gene062811:CDS 50.0%
GGAAGGTCTTCTCTCCAAAG+TGG - chr2.3:24903159-24903178 None:intergenic 50.0%
GGTCTTCTCTCCAAAGTGGA+AGG - chr2.3:24903155-24903174 None:intergenic 50.0%
TCTTCGCCGTGTTTCTCTGT+TGG - chr2.3:24903189-24903208 None:intergenic 50.0%
TGGTGGTCGTCTTCAATCCA+AGG + chr2.3:24905599-24905618 MS.gene062811:CDS 50.0%
TGTGTCGAGGTGCACAACAA+CGG - chr2.3:24907166-24907185 None:intergenic 50.0%
! CTGGCCTTTGATGGATGTGA+CGG - chr2.3:24903734-24903753 None:intergenic 50.0%
! GGACCTGACGTTGGAGATTT+TGG + chr2.3:24905760-24905779 MS.gene062811:CDS 50.0%
!! CAACATGGGTGATGGAAGTC+AGG + chr2.3:24904930-24904949 MS.gene062811:CDS 50.0%
ATGTTACGCAGCGACGGGAA+TGG - chr2.3:24907415-24907434 None:intergenic 55.0%
CGTCACATCCATCAAAGGCC+AGG + chr2.3:24903732-24903751 MS.gene062811:CDS 55.0%
GCGACGGGAATGGTTACTGT+TGG - chr2.3:24907405-24907424 None:intergenic 55.0%
GCGCTGCTTCATCGGAATGA+TGG - chr2.3:24903658-24903677 None:intergenic 55.0%
GGGCTCCTCTTTCTCCTAGT+AGG + chr2.3:24904878-24904897 MS.gene062811:CDS 55.0%
TCACCCGTCCCCGTCATAAA+AGG - chr2.3:24907117-24907136 None:intergenic 55.0%
!! GGGACTTGGTGGTGAGAGAA+AGG + chr2.3:24905533-24905552 MS.gene062811:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 24903104 24907686 24903104 ID=MS.gene062811
chr2.3 mRNA 24903104 24907686 24903104 ID=MS.gene062811.t1;Parent=MS.gene062811
chr2.3 exon 24903104 24903292 24903104 ID=MS.gene062811.t1.exon1;Parent=MS.gene062811.t1
chr2.3 CDS 24903104 24903292 24903104 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24903389 24903845 24903389 ID=MS.gene062811.t1.exon2;Parent=MS.gene062811.t1
chr2.3 CDS 24903389 24903845 24903389 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24903974 24904134 24903974 ID=MS.gene062811.t1.exon3;Parent=MS.gene062811.t1
chr2.3 CDS 24903974 24904134 24903974 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24904437 24904525 24904437 ID=MS.gene062811.t1.exon4;Parent=MS.gene062811.t1
chr2.3 CDS 24904437 24904525 24904437 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24904622 24904707 24904622 ID=MS.gene062811.t1.exon5;Parent=MS.gene062811.t1
chr2.3 CDS 24904622 24904707 24904622 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24904812 24904974 24904812 ID=MS.gene062811.t1.exon6;Parent=MS.gene062811.t1
chr2.3 CDS 24904812 24904974 24904812 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24905497 24905620 24905497 ID=MS.gene062811.t1.exon7;Parent=MS.gene062811.t1
chr2.3 CDS 24905497 24905620 24905497 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24905710 24905867 24905710 ID=MS.gene062811.t1.exon8;Parent=MS.gene062811.t1
chr2.3 CDS 24905710 24905867 24905710 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24906124 24906208 24906124 ID=MS.gene062811.t1.exon9;Parent=MS.gene062811.t1
chr2.3 CDS 24906124 24906208 24906124 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24907054 24907266 24907054 ID=MS.gene062811.t1.exon10;Parent=MS.gene062811.t1
chr2.3 CDS 24907054 24907266 24907054 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
chr2.3 exon 24907625 24907686 24907625 ID=MS.gene062811.t1.exon11;Parent=MS.gene062811.t1
chr2.3 CDS 24907625 24907686 24907625 ID=cds.MS.gene062811.t1;Parent=MS.gene062811.t1
Gene Sequence

>MS.gene062811

ATGGCCGCTTCTGCTACTGTCGATTTTTCTCCATTTAACGGTTCTCAACCTTCCACTTTGGAGAGAAGACCTTCCCATAAATCCAACAGAGAAACACGGCGAAGAGATAGCGGTTCTATTTATGAATCTTCTATTGAATCTTCTGATTGTAAAGCGACCACTTCTCAGGAGACATTTATGAGACAGAAGGTTTACTTATTTTACTTTGATATCAAATTGGCATACACTTTGTACATACACTAATCGATATTCAACTCTGATCATTATCCTAAATTGTTGCTGCAGTCAAGAAATAGCAATGATTCTGTGATGGAGGAAGAAACCTCAAAGATCAATTCTAATGGCTTTGGAGTTTATACATATGAACAAGATGGTTCAAGAAACACAATGGACGAGGATGATAACTATCAAACTCAATATGAAAATGCATTTGCACCAAGAAACAAAAATGGAAGCTATAATGTGTCGAGCGCTGCGAACAATGATGAAGGCGTTGATGAATTTGAAACAAACGTCGTTACCAAAGGAGGAAATGTAATCAAGGGGATGAACCATCATTCCGATGAAGCAGCGCAACACAAATGCTCCTCTGAAACGACAGTTAAAGGAAGTGCAAAGGCTAAAAAGCCGTCACATCCATCAAAGGCCAGGTTTTCTAAATCACCAAAGTCAACATCAAAGACGTCAATAGACTTTTGTGACCCTGAAATAGAGAAGAAAGGGAAAATTCCTGATGAACCGAGTTAGTACAATTGCCCTTTATTTTCCTCATGTGTTATCTTCATGTGAATGTTTCCTATAATTTGAGTTCACTTTTGTTCTATGTTAAGGTATTCTCTTTTGAAAATACTATCAATGCTCATTATGCAGAAGTTGCTGGAAGCAGAAGTACTCTCCCTTTGCATGGTATCAATGGCGTTACAAGTACCGGACTTATGAAAATGATGGGTTTGAGGAAATCAACAAAACATACTGCACTAGCGTCCTCAGAAAGCAATGGAGTAAGATCTAAAAAGGCAAAGAATATAAAGGTTAGTTTTGAGTTTTAATTTTGATACACTGTTAATTTAAAATGTTTTACGCTGTCAACAAATCACTCATGTGTGTGACTTCATAAATTATAAATAATCATGGTTAAAGTCATGATTTGACGATTATGTTTGATCGGCATTGTATTTTTTTTACACCGACAGTGGATATGAATTAAATCGTATTTTTTTATAGATGCTTTCAAATTCAATTCCAGTTGTCCTTCTACTTGAAAAGTAATTATAATTCCATTATTAAAAATCGATGTTGTTTCTAACATATTAATGTGTTGATCATGTCCCAGATGTTGTTTCCTTACGAAGACTTTGTAAAGATTTTCCAGAGTGAAGTCTTTGGCATATTCCCAAGGGGCCTTTTAAATTGCGGGAACAGGTAAAGTTAACATATTATGTAAAACCCTTGATGTCCCTTTTCGATATATTTGAGTCATTGTTTGTTAAATATGTTTTCCTCCTCTTTATTTTGCAGTTGCTATGCCAATGCTGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTTGTCGTTTATTTGCTTTATGGATCACATTCACAATCCTGTATTTCCATTCTCTCTCAATCTTTTCACTTAAACAATAATTCCGATTTTCCTCAAATGCATATTTTTTTTTTAAAATTAAATTGTATTTTTCATGAATGACAGGTTGTGCTAAAGATTGGTGTCTCATGTGTGAGTTGGAGCAGCACATGATGATTTTGAGAGAAATTGGGGCTCCTCTTTCTCCTAGTAGGATACTTTGGCACATGCGTAGCATTAATTGCAACATGGGTGATGGAAGTCAGGAAGATGCCCATGAATTTTTAAGGTGATTTGGGATTATTTCCTATTTATCTTCAATGCTGCAGATTATGAGAATGTTACGATAGATGAGTAGACACACAAGTCAAAATAGGATTAGGAATATATGCATTAAAGAGGACATTAGGGTTGTACGCTTTTACCTATTGTAAAAAAGATAGAATCTTTTTAGGTGGTTTTAGATTATGAAACACTAACACAGACTCGCGCACCGAATACGACACTGATACTAAAACGTAGACACCACTAATAATTAAAGAATTTGGAAGTGATAAAATGTAACTACATGTGTTAGTGTCAACATTTATACATGTTGGACACCAGACACACCTTTAATCCGAAGCTTCACTGCTACATATGTTTTAAAATGCGTGGAGAAGAACTATATAGGCCCAATAAGTTGAGTAAGTTAGAGGTAGAAGTCCATTTGATTCATACAGTCAACTTGACCTAGTATACTGTAGTTTTACTGTGCTTGTTTGAAACATACATAGTTAATGTTAAATTATATCATTTGTTGTTTATATAGGCTTCTAGTTGCATCGATGCAATCAATATGTTTGGAGGGACTTGGTGGTGAGAGAAAGGTTGATCCTAGATTGCAAGAAACAACTTTCATACAACATACTTTTGGTGGTCGTCTTCAATCCAAGGTGTGTGTAACCATTGTCTCGTGATTTTCTTTAGTTTCCCGAAACTTTACATCTTTTTTGATGTCATTTTGAAATTTTAATGTCTACAGGTTAAGTGTTTGAACTGTAGTCATGAGTCAGAAAGGTATGAGAACATTATGGACCTGACGTTGGAGATTTTGGGTTGGGTTGAGTCACTCGAAGATGCACTGACTCAGTTTACTTCCCCTGAAGATTTGGACGGAGAAAATATGTACAGATGTGGAAGGTATGATCATTTAAGTTTTGTATTTTCTGCCGCAATCTATTAAGTACTGATATGGACATGTCAACGCATGTAATAATTTCAGAAAATGAGAGTAACTGAATGTAATCACATGTGTCAGTGTCCAACACCGACACATATCAGACACACCTTCAATATAAATGCTAGTGTTACATAGGTCGAAATAGCATGTTTAATTGGTTAGATTTTTTACTTCCAATTAAGATATCTCACTTTTTTTTTATGCATTTTGAATTAGGTGCACTGCCTATGTTCGAGCTAGAAAGCAACTGAGCATACATGAAGCCCCTAACATCTTGACCATTGTTTTGAAGAGGTTTCAGGTAAATCACAGCTCTTGTAAAATGGTTCTTTATTTTTTTTATCTTTGCTTGGAATGCTAGACATTGTCTTTTGTCCTGGTAATTGTTCTTATTGCTATTTATAGCTTTGGTTGGCGGCGTTAAAATTACCGGCTTTCCAGATTAAGGAACTTGGTTAAGCAGGGCATTAACGAATTTTTTAAAACTTTACCCGGATGTGGTAATGCAATCCGTTTCTGTGTAGTAATGATCTAGTATGGTAGGTCAATTTCATGTGGCCATACGACCTTTTAAAACTAAAATATTTCTCTTATATATTTCTTGTTTTCTTTAAATAAGTATTACTACGAAATAATTATGGGTGTAAATTGTCATTTTGGTCTCTAAATATGAGGCTGTGTCACTATAGTGCTCCTGAATATATTCAAATTACAAAGTAACCCTGAGTGTTTGCTCAAAAAAAAAAAAAAAAAGTAACCCTGAGTGTGTTTTTGTTTAGTAATTTAATTGGCTAAACTGACTAACAAAAGACATATTTGTGGACCAAACTAACTAACGAAACACATATTCGAGGATTAAACCCGCTAAGAAAAGACACATTCAGGGATGTTTTTGTAATTTTAATACATTCAAGGATTATAGTAACAACTCTCGACGCATTCAAGGACCATGATGAGTGATTACTCTGATTCTGGTGATGGAAACATTACTTCAATTCGGCCTTCACCAATATCTCATGTTTATAATGACTGTCTTCTGTAACGTGTGCTAGATCCCATACTTAGATACCAAATAATGGTTTGAATTTCATCATTTTCTTTATATTAACCCGTTGAAATATTTCTTGTCTTGTTCTATGTCATCAGGAAGGAAGATATGGGAAAATTAACAAGTGCATAACTTTTCCTGAAATGCTAGATATGATTCCTTTTATGACGGGGACGGGTGATATTCCTCCATTGTACGTGCTTTATGCCGTTGTTGTGCACCTCGACACACTGAATGCATCCTTCTCTGGACATTATGTTTCGTACGTGAAAGATCTACAAGGCAATTGGTTCAGGATAGATGATACCGAGGTAATGTTGTTGCCTTGTTTGCAAACTTCGTGGTGTGTAATTAACCGGCAATATATTGTTTGTAGCTGTCATTAATTAACTCTTCCAAAAGCTTTACCTGTTGGGAGAAATTGCCTGAATGTTTTTTTTCTCTTACCAACAGTAACCATTCCCGTCGCTGCGTAACATTTTATGCTAATATCTTGTATATTTTATGGAAATAGACTATAAGAGATTATCCATTCAGTTTTTGACAAATTTTCCAACTTAATGTTTTGTTAATATATCTTGATTTTCAGAGAAATAATCAAACAGCAGATACATGTTTTTAATCATATTAACCATATTTCACACCAATAATTTGCTTGAAATTTAACAGGTGCAACCAGTACTAGTAAATCAGGTGATGTCAGAAGGAGCATATATCTTATTCTATACGAG
Protein sequence

>MS.gene062811.t1

MAASATVDFSPFNGSQPSTLERRPSHKSNRETRRRDSGSIYESSIESSDCKATTSQETFMRQKSRNSNDSVMEEETSKINSNGFGVYTYEQDGSRNTMDEDDNYQTQYENAFAPRNKNGSYNVSSAANNDEGVDEFETNVVTKGGNVIKGMNHHSDEAAQHKCSSETTVKGSAKAKKPSHPSKARFSKSPKSTSKTSIDFCDPEIEKKGKIPDEPKVAGSRSTLPLHGINGVTSTGLMKMMGLRKSTKHTALASSESNGVRSKKAKNIKMLFPYEDFVKIFQSEVFGIFPRGLLNCGNSCYANAVLQCLTSTKPLVVYLLYGSHSQSCCAKDWCLMCELEQHMMILREIGAPLSPSRILWHMRSINCNMGDGSQEDAHEFLRLLVASMQSICLEGLGGERKVDPRLQETTFIQHTFGGRLQSKVKCLNCSHESERYENIMDLTLEILGWVESLEDALTQFTSPEDLDGENMYRCGRCTAYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDIPPLYVLYAVVVHLDTLNASFSGHYVSYVKDLQGNWFRIDDTEVQPVLVNQVMSEGAYILFYT