Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062840.t1 | XP_013464364.1 | 95.6 | 270 | 9 | 1 | 1 | 267 | 29 | 298 | 4.50E-137 | 497.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062840.t1 | Q9XGP7 | 44.9 | 236 | 116 | 5 | 44 | 266 | 16 | 250 | 2.2e-44 | 180.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062840.t1 | A0A072V8S2 | 95.6 | 270 | 9 | 1 | 1 | 267 | 29 | 298 | 3.2e-137 | 497.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054473 | MS.gene062840 | 0.813266 | 2.79E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062840.t1 | MTR_2g070410 | 95.556 | 270 | 9 | 1 | 1 | 267 | 29 | 298 | 0.0 | 527 |
MS.gene062840.t1 | MTR_2g070410 | 94.468 | 235 | 10 | 1 | 1 | 232 | 29 | 263 | 2.21e-163 | 454 |
MS.gene062840.t1 | MTR_8g021225 | 39.171 | 217 | 122 | 4 | 60 | 266 | 17 | 233 | 1.82e-47 | 158 |
MS.gene062840.t1 | MTR_4g085590 | 38.710 | 217 | 123 | 3 | 60 | 266 | 29 | 245 | 1.05e-46 | 156 |
MS.gene062840.t1 | MTR_4g094368 | 38.636 | 220 | 124 | 4 | 57 | 265 | 8 | 227 | 2.39e-44 | 150 |
MS.gene062840.t1 | MTR_4g094815 | 33.846 | 260 | 133 | 7 | 25 | 266 | 8 | 246 | 6.45e-43 | 147 |
MS.gene062840.t1 | MTR_4g094925 | 35.294 | 255 | 122 | 10 | 32 | 266 | 10 | 241 | 7.23e-42 | 144 |
MS.gene062840.t1 | MTR_4g094898 | 34.615 | 260 | 131 | 7 | 25 | 266 | 8 | 246 | 1.81e-41 | 143 |
MS.gene062840.t1 | MTR_8g101900 | 40.278 | 216 | 120 | 4 | 60 | 266 | 18 | 233 | 1.29e-40 | 140 |
MS.gene062840.t1 | MTR_4g094812 | 36.283 | 226 | 116 | 8 | 60 | 266 | 28 | 244 | 1.62e-40 | 140 |
MS.gene062840.t1 | MTR_6g091680 | 35.648 | 216 | 130 | 3 | 60 | 266 | 21 | 236 | 1.35e-39 | 138 |
MS.gene062840.t1 | MTR_4g094925 | 38.462 | 195 | 94 | 7 | 89 | 266 | 25 | 210 | 1.09e-37 | 132 |
MS.gene062840.t1 | MTR_4g094898 | 39.378 | 193 | 94 | 5 | 89 | 266 | 1 | 185 | 7.63e-37 | 129 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062840.t1 | AT3G62000 | 76.446 | 242 | 55 | 1 | 28 | 267 | 37 | 278 | 1.61e-139 | 394 |
MS.gene062840.t1 | AT3G62000 | 75.217 | 230 | 55 | 1 | 28 | 255 | 37 | 266 | 3.04e-127 | 365 |
MS.gene062840.t1 | AT3G61990 | 74.459 | 231 | 56 | 1 | 37 | 267 | 63 | 290 | 6.22e-124 | 355 |
MS.gene062840.t1 | AT4G26220 | 42.009 | 219 | 112 | 4 | 60 | 266 | 15 | 230 | 2.08e-52 | 171 |
MS.gene062840.t1 | AT4G34050 | 35.714 | 252 | 139 | 4 | 25 | 266 | 19 | 257 | 7.13e-49 | 162 |
MS.gene062840.t1 | AT4G34050 | 35.714 | 252 | 139 | 4 | 25 | 266 | 46 | 284 | 1.24e-48 | 162 |
MS.gene062840.t1 | AT1G67980 | 39.545 | 220 | 115 | 7 | 60 | 266 | 16 | 230 | 3.73e-46 | 154 |
MS.gene062840.t1 | AT1G67990 | 39.171 | 217 | 121 | 4 | 60 | 266 | 16 | 231 | 7.32e-46 | 154 |
MS.gene062840.t1 | AT1G24735 | 35.484 | 217 | 130 | 3 | 60 | 266 | 22 | 238 | 6.01e-42 | 144 |
MS.gene062840.t1 | AT1G24735 | 35.789 | 190 | 117 | 1 | 82 | 266 | 4 | 193 | 1.55e-39 | 136 |
MS.gene062840.t1 | AT1G24735 | 35.789 | 190 | 117 | 1 | 82 | 266 | 100 | 289 | 8.58e-39 | 137 |
MS.gene062840.t1 | AT1G67980 | 32.484 | 157 | 97 | 3 | 116 | 266 | 9 | 162 | 1.22e-21 | 89.0 |
MS.gene062840.t1 | AT4G34050 | 38.462 | 117 | 65 | 2 | 157 | 266 | 30 | 146 | 4.23e-21 | 87.0 |
Find 48 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATGCTTGTGCAGATTCT+TGG | 0.287926 | 2.4:+25075022 | MS.gene062840:CDS |
GCAACTAAACGACCTGATTC+TGG | 0.314053 | 2.4:-25075686 | None:intergenic |
CATTCATAATTAGAAATTCT+AGG | 0.329217 | 2.4:-25075945 | None:intergenic |
ATTATGTTCTCGAAAATGTT+CGG | 0.386238 | 2.4:+25069987 | MS.gene062840:CDS |
CGAGAACATAATCATACAAC+CGG | 0.392943 | 2.4:-25069976 | None:intergenic |
GCATTAGTCCTTCCAGAATC+AGG | 0.399144 | 2.4:+25075674 | MS.gene062840:CDS |
TTGGTGTCTTAGGTACCTAT+TGG | 0.405861 | 2.4:+25076875 | MS.gene062840:intron |
TCTTTGAGCTTTACTAGTAC+TGG | 0.412893 | 2.4:-25069858 | None:intergenic |
TTATGTTCTCGAAAATGTTC+GGG | 0.415226 | 2.4:+25069988 | MS.gene062840:CDS |
CTCTTGCAGGTGAGGATTGG+AGG | 0.416721 | 2.4:+25076556 | MS.gene062840:intron |
ATAATAGGTGTCTCCTGATC+AGG | 0.424494 | 2.4:+25074988 | MS.gene062840:intron |
CTAGAATTTCTAATTATGAA+TGG | 0.426859 | 2.4:+25075946 | MS.gene062840:CDS |
ATTTGAATTATGCAACAACT+TGG | 0.430353 | 2.4:+25069828 | MS.gene062840:CDS |
GCTTGCTGGTGTTTCACATA+AGG | 0.430882 | 2.4:+25075757 | MS.gene062840:CDS |
TTGATTAAAATTTCTAATGC+TGG | 0.433733 | 2.4:-25076722 | None:intergenic |
AAGAAGTATTATCAGCTTGC+TGG | 0.435455 | 2.4:+25075743 | MS.gene062840:CDS |
GCCAGTAGTTGTGCCTGATC+AGG | 0.436714 | 2.4:-25075001 | None:intergenic |
TCCTGATCAGGCACAACTAC+TGG | 0.443207 | 2.4:+25075000 | MS.gene062840:CDS |
TTTGAATTATGCAACAACTT+GGG | 0.452984 | 2.4:+25069829 | MS.gene062840:CDS |
TTGTAATTGATAATGTCCTT+TGG | 0.454375 | 2.4:+25076584 | MS.gene062840:CDS |
TAAGCGTGTAAGCATCAGTA+TGG | 0.471614 | 2.4:+25076759 | MS.gene062840:CDS |
CTTAGCAACATCAAGAGATC+TGG | 0.475859 | 2.4:-25075723 | None:intergenic |
ATTGTCATTCCATCTCCAAT+AGG | 0.478577 | 2.4:-25076890 | None:intergenic |
CTAATTATGAATGGTGAAGC+TGG | 0.488384 | 2.4:+25075955 | MS.gene062840:CDS |
TGATGGGAGATACCTGCATC+TGG | 0.495028 | 2.4:-25070219 | None:intergenic |
CATTTATTGATGCAGAGAAA+AGG | 0.495349 | 2.4:+25076392 | MS.gene062840:CDS |
ATTCATAATTAGAAATTCTA+GGG | 0.503168 | 2.4:-25075944 | None:intergenic |
TACTAGGTGGATGTAAAACT+TGG | 0.505836 | 2.4:+25075907 | MS.gene062840:intron |
TTGAATTATGCAACAACTTG+GGG | 0.512983 | 2.4:+25069830 | MS.gene062840:CDS |
GCAGAACGGTGTATTGAAGT+TGG | 0.528745 | 2.4:+25075046 | MS.gene062840:CDS |
GTGCTCTTGCAGGTGAGGAT+TGG | 0.530069 | 2.4:+25076553 | MS.gene062840:intron |
TGGAAAAGTTGCTGATCCAT+TGG | 0.533876 | 2.4:+25076609 | MS.gene062840:CDS |
CACTAGTGAGACCTTGTGCA+AGG | 0.541470 | 2.4:+25069801 | MS.gene062840:intron |
TATGCATGGAAGCCAGATGC+AGG | 0.552563 | 2.4:+25070207 | MS.gene062840:CDS |
AATAACAATCTCATTACTGA+TGG | 0.556669 | 2.4:-25069906 | None:intergenic |
AGATCTGGCATCTCTTTCAC+AGG | 0.558087 | 2.4:-25075708 | None:intergenic |
ATTGATAATGTCCTTTGGCA+TGG | 0.562307 | 2.4:+25076589 | MS.gene062840:CDS |
TCTTAGGTACCTATTGGAGA+TGG | 0.564648 | 2.4:+25076881 | MS.gene062840:intron |
TGCAGATTCTTGGAGCAGAA+CGG | 0.585514 | 2.4:+25075032 | MS.gene062840:CDS |
TTATGAATGGTGAAGCTGGA+AGG | 0.590746 | 2.4:+25075959 | MS.gene062840:CDS |
GCGGAGACTGCATCTATGCA+TGG | 0.604771 | 2.4:+25070193 | MS.gene062840:CDS |
GAGATGGAATGACAATCTGT+CGG | 0.623246 | 2.4:+25076897 | MS.gene062840:CDS |
CGAAAATGTTCGGGAACCAG+AGG | 0.628168 | 2.4:+25069997 | MS.gene062840:CDS |
AGGTTGTTAGTCTGACGCCC+CGG | 0.636739 | 2.4:+25069957 | MS.gene062840:CDS |
TTCAAATTAAACCTTGCACA+AGG | 0.652684 | 2.4:-25069812 | None:intergenic |
CTAAACGACCTGATTCTGGA+AGG | 0.659892 | 2.4:-25075682 | None:intergenic |
GAGAACATAATCATACAACC+GGG | 0.710659 | 2.4:-25069975 | None:intergenic |
AGAACATAATCATACAACCG+GGG | 0.758190 | 2.4:-25069974 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 25069533 | 25076928 | 25069533 | ID=MS.gene062840 |
chr2.4 | mRNA | 25069533 | 25076928 | 25069533 | ID=MS.gene062840.t1;Parent=MS.gene062840 |
chr2.4 | exon | 25069533 | 25069536 | 25069533 | ID=MS.gene062840.t1.exon1;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25069533 | 25069536 | 25069533 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25069807 | 25070018 | 25069807 | ID=MS.gene062840.t1.exon2;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25069807 | 25070018 | 25069807 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25070175 | 25070228 | 25070175 | ID=MS.gene062840.t1.exon3;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25070175 | 25070228 | 25070175 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25074995 | 25075078 | 25074995 | ID=MS.gene062840.t1.exon4;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25074995 | 25075078 | 25074995 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25075653 | 25075778 | 25075653 | ID=MS.gene062840.t1.exon5;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25075653 | 25075778 | 25075653 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25075913 | 25075980 | 25075913 | ID=MS.gene062840.t1.exon6;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25075913 | 25075980 | 25075913 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25076381 | 25076450 | 25076381 | ID=MS.gene062840.t1.exon7;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25076381 | 25076450 | 25076381 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25076565 | 25076630 | 25076565 | ID=MS.gene062840.t1.exon8;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25076565 | 25076630 | 25076565 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25076703 | 25076780 | 25076703 | ID=MS.gene062840.t1.exon9;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25076703 | 25076780 | 25076703 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
chr2.4 | exon | 25076887 | 25076928 | 25076887 | ID=MS.gene062840.t1.exon10;Parent=MS.gene062840.t1 |
chr2.4 | CDS | 25076887 | 25076928 | 25076887 | ID=cds.MS.gene062840.t1;Parent=MS.gene062840.t1 |
Gene Sequence |
Protein sequence |