AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062863

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062863.t1 MTR_1g043410 90.323 186 18 0 1 186 42 227 1.43e-122 348
MS.gene062863.t1 MTR_1g074190 55.882 170 69 4 5 170 53 220 8.65e-58 185
MS.gene062863.t1 MTR_1g070140 40.415 193 95 6 1 186 50 229 9.60e-42 143
MS.gene062863.t1 MTR_7g096690 36.364 187 113 4 1 185 21 203 6.65e-35 125
MS.gene062863.t1 MTR_8g066780 36.424 151 90 4 1 151 66 210 2.27e-23 95.1
MS.gene062863.t1 MTR_8g073120 37.037 108 67 1 24 131 41 147 2.47e-23 92.4
MS.gene062863.t1 MTR_5g064890 33.333 186 98 7 1 175 66 236 4.26e-23 94.4
MS.gene062863.t1 MTR_5g064990 38.655 119 69 1 6 124 71 185 1.36e-22 93.6
MS.gene062863.t1 MTR_4g120270 42.424 99 52 1 29 127 56 149 4.49e-22 90.5
MS.gene062863.t1 MTR_4g093830 53.333 75 32 2 53 127 126 197 6.02e-22 91.3
MS.gene062863.t1 MTR_3g099650 50.667 75 37 0 50 124 104 178 3.23e-21 89.7
MS.gene062863.t1 MTR_8g089880 54.667 75 31 2 53 127 127 198 5.37e-21 87.8
MS.gene062863.t1 MTR_5g030010 31.325 166 93 5 1 155 66 221 7.81e-21 88.6
MS.gene062863.t1 MTR_5g024730 30.469 128 83 2 4 131 33 154 1.02e-20 85.5
MS.gene062863.t1 MTR_7g116220 47.945 73 38 0 52 124 69 141 1.03e-20 84.7
MS.gene062863.t1 MTR_2g096350 47.297 74 38 1 54 127 108 180 4.39e-20 84.0
MS.gene062863.t1 MTR_2g009310 50.667 75 34 1 53 127 135 206 6.68e-20 86.3
MS.gene062863.t1 MTR_7g117540 45.455 77 38 1 54 130 77 149 2.14e-19 83.6
MS.gene062863.t1 MTR_2g436100 43.182 88 47 2 40 127 80 164 2.20e-19 83.6
MS.gene062863.t1 MTR_8g063660 50.000 72 33 1 53 124 68 136 4.76e-19 83.2
MS.gene062863.t1 MTR_3g086700 42.857 77 44 0 52 128 45 121 5.60e-19 80.5
MS.gene062863.t1 MTR_3g078470 39.062 128 70 5 2 124 22 146 6.50e-19 80.9
MS.gene062863.t1 MTR_3g464780 41.975 81 46 1 48 127 97 177 7.06e-19 81.6
MS.gene062863.t1 MTR_1g082550 32.540 126 71 2 1 124 56 169 7.32e-19 83.2
MS.gene062863.t1 MTR_5g034790 51.389 72 32 1 53 124 116 184 8.14e-19 82.8
MS.gene062863.t1 MTR_3g086730 42.857 77 44 0 52 128 45 121 1.41e-18 80.5
MS.gene062863.t1 MTR_4g106680 46.154 78 39 1 53 130 106 180 1.85e-18 81.3
MS.gene062863.t1 MTR_6g087150 41.975 81 44 2 49 129 89 166 2.21e-18 81.6
MS.gene062863.t1 MTR_7g113800 46.575 73 39 0 52 124 90 162 2.67e-18 81.3
MS.gene062863.t1 MTR_7g076250 31.293 147 86 7 12 153 20 156 3.77e-18 78.2
MS.gene062863.t1 MTR_1g070425 44.444 72 40 0 53 124 68 139 3.95e-18 78.2
MS.gene062863.t1 MTR_5g064980 43.902 82 44 2 53 133 108 188 4.74e-18 80.9
MS.gene062863.t1 MTR_7g116180 44.444 72 40 0 53 124 67 138 5.71e-18 77.8
MS.gene062863.t1 MTR_2g055790 40.860 93 43 2 41 127 59 145 6.27e-18 77.8
MS.gene062863.t1 MTR_3g116000 27.338 139 96 2 4 141 29 163 8.10e-18 77.4
MS.gene062863.t1 MTR_3g110190 42.529 87 44 3 41 127 57 137 8.64e-18 79.7
MS.gene062863.t1 MTR_8g023400 44.444 81 41 1 49 129 88 164 1.09e-17 79.3
MS.gene062863.t1 MTR_3g094000 38.158 76 46 1 52 127 90 164 1.30e-17 76.6
MS.gene062863.t1 MTR_3g091620 32.192 146 77 4 37 164 86 227 1.44e-17 79.3
MS.gene062863.t1 MTR_2g090905 38.961 77 44 1 54 127 40 116 1.61e-17 75.1
MS.gene062863.t1 MTR_8g093010 37.500 80 48 1 46 125 100 177 1.85e-17 77.0
MS.gene062863.t1 MTR_3g078450 42.045 88 49 2 38 124 60 146 1.97e-17 77.0
MS.gene062863.t1 MTR_3g100400 42.667 75 40 2 53 127 130 201 2.02e-17 79.3
MS.gene062863.t1 MTR_8g092985 36.364 99 57 3 49 143 107 203 2.07e-17 77.0
MS.gene062863.t1 MTR_1g492830 43.836 73 39 1 52 124 60 130 2.08e-17 77.0
MS.gene062863.t1 MTR_6g007737 47.222 72 35 1 53 124 133 201 2.81e-17 78.6
MS.gene062863.t1 MTR_8g092930 33.645 107 65 3 52 154 111 215 2.99e-17 76.6
MS.gene062863.t1 MTR_6g055030 37.662 77 48 0 52 128 96 172 4.79e-17 77.4
MS.gene062863.t1 MTR_8g066740 44.156 77 42 1 49 124 72 148 5.23e-17 77.4
MS.gene062863.t1 MTR_4g063070 40.000 95 52 3 34 124 285 378 5.28e-17 78.2
MS.gene062863.t1 MTR_5g082940 33.333 111 70 2 26 133 45 154 7.30e-17 74.3
MS.gene062863.t1 MTR_8g028465 45.833 72 34 1 53 124 90 156 7.95e-17 75.1
MS.gene062863.t1 MTR_2g090950 34.694 98 55 2 53 147 91 182 8.45e-17 75.9
MS.gene062863.t1 MTR_8g092840 31.250 112 68 2 14 125 81 183 8.58e-17 75.5
MS.gene062863.t1 MTR_5g066250 41.026 78 43 2 50 127 131 205 1.36e-16 77.0
MS.gene062863.t1 MTR_7g073200 31.148 122 77 3 4 124 34 149 1.50e-16 73.9
MS.gene062863.t1 MTR_3g071300 33.613 119 66 4 23 129 36 153 1.84e-16 73.6
MS.gene062863.t1 MTR_7g116200 43.836 73 37 1 52 124 67 135 1.88e-16 73.6
MS.gene062863.t1 MTR_8g099495 40.426 94 48 3 36 124 299 389 2.46e-16 76.3
MS.gene062863.t1 MTR_8g092960 37.838 74 44 1 52 125 102 173 2.53e-16 73.9
MS.gene062863.t1 MTR_5g009210 50.000 72 35 1 53 124 287 357 4.23e-16 75.1
MS.gene062863.t1 MTR_7g079280 41.667 72 41 1 53 124 80 150 4.92e-16 72.4
MS.gene062863.t1 MTR_5g026720 36.047 86 51 2 55 137 64 148 5.21e-16 72.0
MS.gene062863.t1 MTR_5g076990 35.652 115 64 3 13 124 41 148 5.85e-16 74.3
MS.gene062863.t1 MTR_1g026070 31.061 132 81 2 6 137 5 126 6.65e-16 70.9
MS.gene062863.t1 MTR_5g009190 48.611 72 36 1 53 124 266 336 7.12e-16 74.3
MS.gene062863.t1 MTR_2g044570 40.909 66 39 0 62 127 63 128 8.39e-16 73.9
MS.gene062863.t1 MTR_8g092970 38.947 95 52 3 63 153 114 206 9.36e-16 72.4
MS.gene062863.t1 MTR_8g009190 31.818 110 75 0 18 127 41 150 1.39e-15 73.6
MS.gene062863.t1 MTR_5g009200 48.611 72 36 1 53 124 322 392 1.81e-15 73.6
MS.gene062863.t1 MTR_5g026730 29.457 129 77 2 2 128 24 140 1.89e-15 70.9
MS.gene062863.t1 MTR_7g108855 37.634 93 57 1 35 127 48 139 3.17e-15 70.9
MS.gene062863.t1 MTR_3g012550 41.667 72 41 1 53 124 80 150 3.21e-15 70.5
MS.gene062863.t1 MTR_4g129420 41.333 75 36 2 53 124 117 186 3.27e-15 73.2
MS.gene062863.t1 MTR_7g116210 42.466 73 38 1 52 124 9 77 4.25e-15 68.6
MS.gene062863.t1 MTR_1g090480 38.889 72 43 1 54 124 73 144 5.71e-15 69.3
MS.gene062863.t1 MTR_7g079290 41.026 78 35 2 53 124 125 197 7.93e-15 70.1
MS.gene062863.t1 MTR_8g092990 36.458 96 55 3 63 154 124 217 8.10e-15 70.1
MS.gene062863.t1 MTR_1g056350 37.500 72 45 0 53 124 74 145 1.07e-14 68.6
MS.gene062863.t1 MTR_5g071930 39.474 76 40 2 52 127 65 134 1.53e-14 68.9
MS.gene062863.t1 MTR_5g092790 36.709 79 43 2 52 127 156 230 1.69e-14 69.3
MS.gene062863.t1 MTR_8g032690 51.064 47 23 0 78 124 15 61 2.42e-14 66.2
MS.gene062863.t1 MTR_4g022410 37.624 101 58 3 32 131 66 162 3.36e-14 67.8
MS.gene062863.t1 MTR_3g095560 27.679 112 70 2 14 125 79 179 5.92e-14 68.2
MS.gene062863.t1 MTR_8g071815 27.907 129 78 3 1 128 22 136 6.27e-14 67.0
MS.gene062863.t1 MTR_4g056590 36.842 76 42 1 49 124 96 165 6.63e-14 67.0
MS.gene062863.t1 MTR_3g114500 32.292 96 58 2 32 127 28 116 7.70e-14 65.5
MS.gene062863.t1 MTR_5g022920 36.842 76 47 1 52 127 160 234 7.91e-14 67.8
MS.gene062863.t1 MTR_5g092750 36.709 79 43 2 52 127 156 230 9.45e-14 67.4
MS.gene062863.t1 MTR_7g117350 37.079 89 53 1 39 124 268 356 1.15e-13 68.6
MS.gene062863.t1 MTR_4g030070 29.060 117 73 3 20 136 58 164 1.17e-13 67.0
MS.gene062863.t1 MTR_7g117350 37.079 89 53 1 39 124 276 364 1.21e-13 68.6
MS.gene062863.t1 MTR_8g019710 38.667 75 38 1 70 144 42 108 3.73e-13 63.9
MS.gene062863.t1 MTR_8g074900 38.356 73 38 1 53 125 158 223 4.44e-13 65.5
MS.gene062863.t1 MTR_7g059360 36.264 91 52 3 39 128 119 204 6.15e-13 65.1
MS.gene062863.t1 MTR_8g099515 41.250 80 42 2 47 124 303 379 8.46e-13 65.9
MS.gene062863.t1 MTR_3g078120 32.000 100 65 2 30 127 32 130 9.06e-13 63.2
MS.gene062863.t1 MTR_1g114240 36.585 82 49 2 49 130 257 335 1.32e-12 65.1
MS.gene062863.t1 MTR_1g100737 32.051 78 51 1 52 127 91 168 1.35e-12 63.5
MS.gene062863.t1 MTR_1g114240 36.585 82 49 2 49 130 251 329 1.43e-12 65.1
MS.gene062863.t1 MTR_1g090460 39.394 66 39 1 60 124 72 137 1.74e-12 62.4
MS.gene062863.t1 MTR_3g081030 36.893 103 53 3 30 124 63 161 1.78e-12 63.5
MS.gene062863.t1 MTR_3g078520 31.915 94 58 2 53 142 76 167 2.57e-12 62.4
MS.gene062863.t1 MTR_2g079320 45.312 64 33 2 63 124 138 201 4.05e-12 62.4
MS.gene062863.t1 MTR_8g027980 37.838 74 42 2 56 127 93 164 6.08e-12 62.8
MS.gene062863.t1 MTR_2g035800 27.885 104 72 1 36 139 59 159 7.34e-12 60.8
MS.gene062863.t1 MTR_2g041200 37.500 80 47 1 52 128 76 155 1.12e-11 60.8
MS.gene062863.t1 MTR_3g078540 30.000 80 56 0 54 133 51 130 1.16e-11 60.1
MS.gene062863.t1 MTR_4g108830 38.462 78 38 3 53 127 121 191 1.19e-11 60.8
MS.gene062863.t1 MTR_4g108830 38.462 78 38 3 53 127 149 219 1.46e-11 61.2
MS.gene062863.t1 MTR_8g028815 36.047 86 51 2 43 124 50 135 5.22e-11 58.9
MS.gene062863.t1 MTR_3g091200 37.500 72 44 1 53 124 303 373 6.77e-11 60.5
MS.gene062863.t1 MTR_4g116460 37.234 94 50 5 36 127 400 486 8.16e-11 60.5
MS.gene062863.t1 MTR_4g116460 37.234 94 50 5 36 127 443 529 9.01e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062863.t1 AT1G04360 46.277 188 83 6 1 175 52 234 8.68e-47 157
MS.gene062863.t1 AT5G43420 43.719 199 85 6 1 182 45 233 9.33e-47 157
MS.gene062863.t1 AT4G17905 33.721 172 102 3 1 166 69 234 1.20e-25 100
MS.gene062863.t1 AT4G17905 33.721 172 102 3 1 166 95 260 2.88e-25 100
MS.gene062863.t1 AT3G03550 30.769 208 114 8 1 186 67 266 1.70e-23 95.5
MS.gene062863.t1 AT1G72220 47.778 90 38 2 53 142 151 231 3.20e-22 92.8
MS.gene062863.t1 AT5G17600 35.156 128 79 2 1 128 65 188 3.99e-22 92.0
MS.gene062863.t1 AT3G16720 44.318 88 45 1 40 127 81 164 8.45e-22 90.5
MS.gene062863.t1 AT1G23980 54.167 72 30 1 53 124 118 186 2.36e-21 90.1
MS.gene062863.t1 AT4G09100 49.351 77 37 2 52 127 55 130 6.12e-21 84.0
MS.gene062863.t1 AT2G34990 37.097 124 72 4 3 124 19 138 8.26e-21 87.8
MS.gene062863.t1 AT1G76410 30.469 128 87 1 4 131 28 153 8.34e-21 85.1
MS.gene062863.t1 AT2G34990 37.097 124 72 4 3 124 41 160 1.09e-20 87.8
MS.gene062863.t1 AT5G10380 50.000 82 34 3 53 132 109 185 4.87e-20 85.5
MS.gene062863.t1 AT4G40070 33.594 128 75 1 1 128 53 170 8.22e-20 85.1
MS.gene062863.t1 AT4G09120 48.750 80 37 2 52 129 93 170 8.28e-20 85.5
MS.gene062863.t1 AT4G09110 39.796 98 55 2 34 129 75 170 1.54e-19 84.3
MS.gene062863.t1 AT1G49220 34.959 123 73 3 5 124 59 177 1.55e-19 83.2
MS.gene062863.t1 AT3G18773 35.714 112 62 3 13 124 71 172 3.30e-19 82.0
MS.gene062863.t1 AT1G72200 31.452 124 78 1 1 124 70 186 3.69e-19 84.3
MS.gene062863.t1 AT2G35000 45.783 83 41 2 52 132 105 185 4.72e-19 83.6
MS.gene062863.t1 AT1G35330 48.000 75 35 2 52 124 99 171 5.16e-19 83.2
MS.gene062863.t1 AT2G20030 39.560 91 52 2 45 135 90 177 7.41e-19 83.2
MS.gene062863.t1 AT4G28890 40.217 92 52 2 44 135 88 176 9.97e-19 83.2
MS.gene062863.t1 AT2G27940 46.753 77 35 2 49 124 111 182 1.07e-18 80.9
MS.gene062863.t1 AT1G20823 32.203 118 68 2 24 131 45 160 1.94e-18 79.3
MS.gene062863.t1 AT4G15975 35.354 99 60 1 29 127 27 121 2.51e-18 79.7
MS.gene062863.t1 AT5G57750 45.070 71 37 1 54 124 96 164 3.17e-18 79.0
MS.gene062863.t1 AT3G05200 42.169 83 40 2 46 124 92 170 3.86e-18 81.3
MS.gene062863.t1 AT3G48030 43.902 82 36 2 53 130 102 177 4.22e-18 79.7
MS.gene062863.t1 AT2G42350 33.813 139 71 5 31 158 51 179 4.54e-18 79.0
MS.gene062863.t1 AT5G40250 45.570 79 36 1 53 124 107 185 5.42e-18 80.9
MS.gene062863.t1 AT2G42360 34.513 113 58 2 52 164 80 176 6.16e-18 79.0
MS.gene062863.t1 AT3G48030 43.902 82 36 2 53 130 180 255 7.03e-18 80.1
MS.gene062863.t1 AT5G27420 33.333 123 71 3 2 124 55 166 8.92e-18 80.1
MS.gene062863.t1 AT4G30400 45.833 72 37 1 53 124 107 176 9.10e-18 80.5
MS.gene062863.t1 AT1G49200 33.333 123 75 3 5 124 60 178 9.94e-18 78.2
MS.gene062863.t1 AT4G17920 44.000 75 42 0 53 127 81 155 1.03e-17 79.0
MS.gene062863.t1 AT4G33565 45.333 75 38 1 53 127 191 262 1.21e-17 79.7
MS.gene062863.t1 AT5G05810 44.000 75 39 2 53 127 120 191 1.22e-17 80.1
MS.gene062863.t1 AT2G46160 42.857 77 39 1 53 124 104 180 1.33e-17 77.4
MS.gene062863.t1 AT2G46160 42.857 77 39 1 53 124 104 180 1.33e-17 77.4
MS.gene062863.t1 AT1G49210 35.537 121 75 2 5 124 59 177 1.39e-17 77.8
MS.gene062863.t1 AT2G17450 32.773 119 73 2 26 140 45 160 1.40e-17 76.6
MS.gene062863.t1 AT4G09130 40.909 88 48 2 52 137 90 175 1.42e-17 79.3
MS.gene062863.t1 AT3G14320 39.080 87 48 3 46 131 55 137 2.07e-17 76.6
MS.gene062863.t1 AT2G18650 45.205 73 36 2 53 124 99 168 3.84e-17 78.6
MS.gene062863.t1 AT3G62690 40.000 80 45 1 54 133 88 164 3.98e-17 77.0
MS.gene062863.t1 AT2G35910 44.444 72 37 1 53 124 121 189 5.60e-17 75.9
MS.gene062863.t1 AT1G22500 45.833 72 39 0 53 124 89 160 6.44e-17 77.8
MS.gene062863.t1 AT2G47560 38.095 84 51 1 44 127 71 153 7.04e-17 75.9
MS.gene062863.t1 AT5G01880 37.500 88 50 2 41 127 67 150 7.60e-17 74.3
MS.gene062863.t1 AT3G61550 41.975 81 37 2 53 124 99 178 8.28e-17 75.5
MS.gene062863.t1 AT3G10910 26.994 163 91 6 4 156 33 177 9.01e-17 74.7
MS.gene062863.t1 AT1G53820 38.835 103 48 4 28 128 77 166 3.15e-16 75.1
MS.gene062863.t1 AT5G05280 28.346 127 79 3 4 127 41 158 3.16e-16 73.2
MS.gene062863.t1 AT3G18930 35.135 111 58 4 45 148 113 216 3.68e-16 75.9
MS.gene062863.t1 AT3G18930 35.135 111 58 4 45 148 113 216 3.68e-16 75.9
MS.gene062863.t1 AT3G18930 35.135 111 58 4 45 148 113 216 3.68e-16 75.9
MS.gene062863.t1 AT5G46650 44.737 76 41 1 53 127 85 160 4.14e-16 74.7
MS.gene062863.t1 AT4G10160 29.730 111 62 2 43 153 62 156 5.24e-16 73.6
MS.gene062863.t1 AT5G06490 37.755 98 52 3 31 124 79 171 6.07e-16 72.8
MS.gene062863.t1 AT3G19140 31.250 144 80 5 3 145 13 138 9.16e-16 70.9
MS.gene062863.t1 AT4G35840 34.091 88 58 0 40 127 149 236 9.83e-16 72.8
MS.gene062863.t1 AT2G46493 44.000 75 39 2 51 124 108 180 9.99e-16 72.0
MS.gene062863.t1 AT4G10150 32.456 114 55 3 43 153 76 170 1.02e-15 72.8
MS.gene062863.t1 AT2G35420 41.558 77 38 2 50 124 74 145 1.07e-15 73.2
MS.gene062863.t1 AT5G53110 36.697 109 66 3 18 124 265 372 1.22e-15 73.9
MS.gene062863.t1 AT1G32361 36.782 87 50 2 50 136 127 208 1.66e-15 73.6
MS.gene062863.t1 AT3G60220 42.029 69 40 0 56 124 91 159 2.73e-15 72.8
MS.gene062863.t1 AT5G07040 40.506 79 46 1 53 131 66 143 3.23e-15 70.1
MS.gene062863.t1 AT1G49230 27.481 131 92 2 2 132 54 181 6.16e-15 70.5
MS.gene062863.t1 AT2G34000 32.031 128 83 3 1 125 8 134 1.10e-14 68.2
MS.gene062863.t1 AT1G72310 36.000 75 44 1 53 127 102 172 1.23e-14 70.9
MS.gene062863.t1 AT1G33480 32.292 96 61 1 46 141 68 159 1.81e-14 69.7
MS.gene062863.t1 AT5G66070 37.500 80 45 2 48 127 147 221 1.91e-14 69.3
MS.gene062863.t1 AT5G66070 37.500 80 45 2 48 127 147 221 1.91e-14 69.3
MS.gene062863.t1 AT1G80400 36.634 101 42 3 49 128 301 400 2.72e-14 70.5
MS.gene062863.t1 AT3G20395 31.897 116 65 3 13 128 116 217 2.96e-14 68.6
MS.gene062863.t1 AT5G66070 37.500 80 45 2 48 127 171 245 3.89e-14 68.6
MS.gene062863.t1 AT4G35480 29.825 114 66 2 26 125 43 156 4.27e-14 67.8
MS.gene062863.t1 AT2G17730 32.941 85 57 0 43 127 157 241 6.74e-14 68.2
MS.gene062863.t1 AT5G58580 36.782 87 53 1 41 127 99 183 1.05e-13 68.2
MS.gene062863.t1 AT2G46495 38.750 80 49 0 53 132 263 342 1.38e-13 68.2
MS.gene062863.t1 AT2G46494 44.595 74 38 2 52 124 287 358 1.44e-13 68.2
MS.gene062863.t1 AT2G46495 38.750 80 49 0 53 132 291 370 1.97e-13 67.8
MS.gene062863.t1 AT1G53010 40.476 84 40 3 49 125 93 173 6.39e-13 64.3
MS.gene062863.t1 AT2G18670 32.500 80 52 1 53 132 83 160 1.01e-12 63.9
MS.gene062863.t1 AT1G28040 35.644 101 56 3 31 124 197 295 1.21e-12 65.1
MS.gene062863.t1 AT2G25410 35.000 80 52 0 53 132 298 377 1.95e-12 65.1
MS.gene062863.t1 AT5G47610 33.735 83 52 2 57 138 84 164 2.06e-12 62.8
MS.gene062863.t1 AT5G42200 29.703 101 60 2 28 128 61 150 6.83e-12 61.2
MS.gene062863.t1 AT1G74410 34.615 78 48 1 50 127 147 221 1.01e-11 61.6
MS.gene062863.t1 AT2G37580 36.765 68 43 0 68 135 128 195 1.66e-11 61.2
MS.gene062863.t1 AT3G19910 34.091 88 55 2 47 134 255 339 1.99e-11 62.0
MS.gene062863.t1 AT4G24015 47.368 57 29 1 75 130 97 153 2.68e-11 59.7
MS.gene062863.t1 AT5G41400 40.789 76 42 2 62 135 85 159 2.97e-11 59.7
MS.gene062863.t1 AT4G26580 36.585 82 48 2 49 127 253 333 4.94e-11 60.8
MS.gene062863.t1 AT4G26580 36.585 82 48 2 49 127 253 333 4.94e-11 60.8
MS.gene062863.t1 AT4G30370 34.211 76 45 2 53 127 89 160 5.96e-11 58.9
MS.gene062863.t1 AT1G51930 45.833 48 26 0 82 129 80 127 8.31e-11 57.8
MS.gene062863.t1 AT3G11110 37.333 75 45 1 53 127 80 152 8.58e-11 58.2
MS.gene062863.t1 AT2G44578 44.898 49 27 0 79 127 67 115 9.99e-11 57.8

Find 19 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAAGACTATGGTGAATT+AGG 0.240210 1.1:+27286397 MS.gene062863:CDS
TGAAATAAATGGTTGCAATT+TGG 0.290797 1.1:-27286484 None:intergenic
CACAATCAATGTGAAATAAA+TGG 0.300719 1.1:-27286495 None:intergenic
ACATTGATTGTGTTGATGTT+TGG 0.348549 1.1:+27286506 MS.gene062863:CDS
TGATCAAATGCTGCTTCAAT+TGG 0.375168 1.1:+27286230 MS.gene062863:CDS
TACAAAGAAGAGAAAGACTA+TGG 0.419059 1.1:+27286388 MS.gene062863:CDS
TGCAAATAAGGTGAAGGTCT+TGG 0.431537 1.1:-27286610 None:intergenic
TCTTCTTTGTAATGAATCAC+TGG 0.437626 1.1:-27286376 None:intergenic
CAAAATGTTGAAAACATCAT+TGG 0.439598 1.1:+27286637 MS.gene062863:CDS
TTTGATCACAAAGGTGTAGT+AGG 0.482721 1.1:-27286215 None:intergenic
GAGTGACAACATGCTCAACT+TGG 0.515758 1.1:-27286588 None:intergenic
CATGAAAGAAGAGATGAAAG+AGG 0.539247 1.1:+27286727 MS.gene062863:CDS
TGGCTTTGCAAATAAGGTGA+AGG 0.542682 1.1:-27286616 None:intergenic
GCATAGAGGATTAGAACAAT+CGG 0.544428 1.1:+27286339 MS.gene062863:CDS
AATAATGAAAATGACCATGA+AGG 0.566631 1.1:+27286694 MS.gene062863:CDS
AATGTTGAAAACATCATTGG+TGG 0.585029 1.1:+27286640 MS.gene062863:CDS
GAAGCAGCATTTGATCACAA+AGG 0.695774 1.1:-27286224 None:intergenic
TCAATGACATCGGAGCATAG+AGG 0.698361 1.1:+27286325 MS.gene062863:CDS
TACGTCGTACTCAATGACAT+CGG 0.715236 1.1:+27286315 MS.gene062863:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTGTTGTAATTGATT+TGG + chr1.1:27286669-27286688 MS.gene062863:CDS 20.0%
! AATAATGAAAATGACCATGA+AGG + chr1.1:27286694-27286713 MS.gene062863:CDS 25.0%
! CAAAATGTTGAAAACATCAT+TGG + chr1.1:27286637-27286656 MS.gene062863:CDS 25.0%
! CACAATCAATGTGAAATAAA+TGG - chr1.1:27286498-27286517 None:intergenic 25.0%
! TGAAATAAATGGTTGCAATT+TGG - chr1.1:27286487-27286506 None:intergenic 25.0%
!! CAATGATGTTTTCAACATTT+TGG - chr1.1:27286639-27286658 None:intergenic 25.0%
AATGTTGAAAACATCATTGG+TGG + chr1.1:27286640-27286659 MS.gene062863:CDS 30.0%
TACAAAGAAGAGAAAGACTA+TGG + chr1.1:27286388-27286407 MS.gene062863:CDS 30.0%
TCTTCTTTGTAATGAATCAC+TGG - chr1.1:27286379-27286398 None:intergenic 30.0%
! ACATTGATTGTGTTGATGTT+TGG + chr1.1:27286506-27286525 MS.gene062863:CDS 30.0%
! GAAACTTTTCTTCTACAAAG+TGG - chr1.1:27286553-27286572 None:intergenic 30.0%
!!! ACATTTTGGCTTTGCAAATA+AGG - chr1.1:27286625-27286644 None:intergenic 30.0%
GAGAAAGACTATGGTGAATT+AGG + chr1.1:27286397-27286416 MS.gene062863:CDS 35.0%
GCATAGAGGATTAGAACAAT+CGG + chr1.1:27286339-27286358 MS.gene062863:CDS 35.0%
! GGCAACATTTTTCTTGCTAA+TGG + chr1.1:27286192-27286211 MS.gene062863:CDS 35.0%
! TGATCAAATGCTGCTTCAAT+TGG + chr1.1:27286230-27286249 MS.gene062863:CDS 35.0%
! TTTGATCACAAAGGTGTAGT+AGG - chr1.1:27286218-27286237 None:intergenic 35.0%
GAAGCAGCATTTGATCACAA+AGG - chr1.1:27286227-27286246 None:intergenic 40.0%
TACGTCGTACTCAATGACAT+CGG + chr1.1:27286315-27286334 MS.gene062863:CDS 40.0%
TGCAAATAAGGTGAAGGTCT+TGG - chr1.1:27286613-27286632 None:intergenic 40.0%
! TGGCTTTGCAAATAAGGTGA+AGG - chr1.1:27286619-27286638 None:intergenic 40.0%
!! CATGCAAGTTTTGACCTTCA+TGG - chr1.1:27286711-27286730 None:intergenic 40.0%
GAGTGACAACATGCTCAACT+TGG - chr1.1:27286591-27286610 None:intergenic 45.0%
TCAATGACATCGGAGCATAG+AGG + chr1.1:27286325-27286344 MS.gene062863:CDS 45.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 27286190 27286748 27286190 ID=MS.gene062863
chr1.1 mRNA 27286190 27286748 27286190 ID=MS.gene062863.t1;Parent=MS.gene062863
chr1.1 exon 27286190 27286748 27286190 ID=MS.gene062863.t1.exon1;Parent=MS.gene062863.t1
chr1.1 CDS 27286190 27286748 27286190 ID=cds.MS.gene062863.t1;Parent=MS.gene062863.t1
Gene Sequence

>MS.gene062863

ATGGCAACATTTTTCTTGCTAATGGCCTACTACACCTTTGTGATCAAATGCTGCTTCAATTGGAACAATATTGATCTTGTTAGAGTAAGACGTTTTTCTTTTTCAAGACAACTTGAAGAACAATCTACGTCGTACTCAATGACATCGGAGCATAGAGGATTAGAACAATCGGTGATTAATTCAATTCCAGTGATTCATTACAAAGAAGAGAAAGACTATGGTGAATTAGGAATCTCTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTCAAGAAGATGAGATACTAAGAGTTATACCAAATTGCAACCATTTATTTCACATTGATTGTGTTGATGTTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGAAAAGTTTCAATGACAAGAGAAATCCAAGTTGAGCATGTTGTCACTCCAAGACCTTCACCTTATTTGCAAAGCCAAAATGTTGAAAACATCATTGGTGGTTGTGAAGATTTTGTTGTAATTGATTTGGATAATAATGAAAATGACCATGAAGGTCAAAACTTGCATGAAAGAAGAGATGAAAGAG
Protein sequence

>MS.gene062863.t1

MATFFLLMAYYTFVIKCCFNWNNIDLVRVRRFSFSRQLEEQSTSYSMTSEHRGLEQSVINSIPVIHYKEEKDYGELGISSECAFCLSEFQEDEILRVIPNCNHLFHIDCVDVWLQNNANCPLCRRKVSMTREIQVEHVVTPRPSPYLQSQNVENIIGGCEDFVVIDLDNNENDHEGQNLHERRDER