AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062935


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062935.t1 MTR_4g072110 98.067 569 9 2 1 567 1 569 0.0 1134
MS.gene062935.t1 MTR_3g117590 77.228 404 61 2 128 531 27 399 0.0 629
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062935.t1 AT4G34740 81.944 504 81 2 51 553 67 561 0.0 847
MS.gene062935.t1 AT2G16570 82.863 496 83 2 60 553 71 566 0.0 845
MS.gene062935.t1 AT4G38880 70.942 499 135 5 31 526 34 525 0.0 713

Find 154 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATAGCTGTTCCTGATTC+TGG 0.178498 4.2:+35771848 MS.gene062935:CDS
AGAGAAGGGAGAGAGGGTTT+TGG 0.224365 4.2:-35770870 None:intergenic
GGATGAGTGTTGAAGAAATA+AGG 0.235614 4.2:+35772212 MS.gene062935:CDS
GGGTTTAGGCCTTTGGTTAT+GGG 0.237862 4.2:+35771542 MS.gene062935:CDS
TGGGTTTAGGCCTTTGGTTA+TGG 0.266896 4.2:+35771541 MS.gene062935:CDS
GAGAGGATGATGTCGGAAAT+TGG 0.268968 4.2:-35770936 None:intergenic
ATTATTGGTTCTTGTTACTA+TGG 0.269970 4.2:+35772151 MS.gene062935:CDS
ATTGCAAGTCCACCAATTAT+TGG 0.272119 4.2:+35772136 MS.gene062935:CDS
TGACGATCCCGGCGCCTTCT+TGG 0.277743 4.2:-35771100 None:intergenic
GTGCTGTGCTTGAAGGTAAA+AGG 0.278979 4.2:+35772017 MS.gene062935:CDS
TCAACAATTCTCAAAATAAA+AGG 0.280388 4.2:-35771440 None:intergenic
GTAGCAGTATTCACCTCTTT+TGG 0.290374 4.2:-35772454 None:intergenic
TGAGGGATCCGTTTGGGTTT+AGG 0.298862 4.2:+35771528 MS.gene062935:CDS
TCCGTTTGGGTTTAGGCCTT+TGG 0.309909 4.2:+35771535 MS.gene062935:CDS
GTGATTGTGGTTGATAATAA+TGG 0.317436 4.2:+35771659 MS.gene062935:CDS
TGCGGAGTTGTTGGAATCTA+TGG 0.322709 4.2:+35771020 MS.gene062935:CDS
AGAGCTAAGCTTGAAGATAA+AGG 0.329947 4.2:+35771350 MS.gene062935:CDS
AGTGAGGAAAAGGGGTTTAC+GGG 0.333438 4.2:-35770901 None:intergenic
CTCTTAACCTTGAGCTCTCT+TGG 0.333802 4.2:-35772352 None:intergenic
TGATGGTTTGAATGGGAGTT+TGG 0.341680 4.2:+35772393 MS.gene062935:CDS
AAGTGAGGAAAAGGGGTTTA+CGG 0.349379 4.2:-35770902 None:intergenic
TTGAGCCGTCTCAGAAGATT+AGG 0.349524 4.2:+35771960 MS.gene062935:CDS
TTGAGCTCTCTTGGTTCAAC+AGG 0.352244 4.2:-35772343 None:intergenic
TGGCCGATGGCTAAGCTTCC+GGG 0.363060 4.2:-35771206 None:intergenic
CGCCTTCTTGGCCGCGGTGT+TGG 0.365653 4.2:-35771088 None:intergenic
TTTGTTGCTGGGTACCGTTT+TGG 0.372205 4.2:+35771278 MS.gene062935:CDS
CCGGTCCGTGCTGTGCTTGA+AGG 0.375757 4.2:+35772010 MS.gene062935:CDS
AGAGGATGATGTCGGAAATT+GGG 0.376272 4.2:-35770935 None:intergenic
GGGAGGGAGAAGGGATGGTT+TGG 0.381402 4.2:-35770817 None:intergenic
GTTGGTGACTTTGTTGATGA+TGG 0.383115 4.2:+35772376 MS.gene062935:CDS
TAGTAACAAGAACCAATAAT+TGG 0.384192 4.2:-35772148 None:intergenic
CAGAGGAGTTGATATCTAAT+AGG 0.384260 4.2:+35772191 MS.gene062935:CDS
GAGAAGGGATGGTTTGGTTA+GGG 0.384271 4.2:-35770811 None:intergenic
GATTCAATCGCTCTGTTTGA+TGG 0.385949 4.2:+35771682 MS.gene062935:CDS
CTAATCAACCCTTGTTGAAA+AGG 0.394989 4.2:-35771911 None:intergenic
GAAGATTGTGAGGTTGCTTA+AGG 0.403149 4.2:+35772084 MS.gene062935:CDS
GGAGAAGGGATGGTTTGGTT+AGG 0.409516 4.2:-35770812 None:intergenic
CGTGAAGAGTGCGGAGTTGT+TGG 0.409849 4.2:+35771011 MS.gene062935:CDS
TTTGTTGATGATGGTTTGAA+TGG 0.415105 4.2:+35772385 MS.gene062935:CDS
ATGGCCGATGGCTAAGCTTC+CGG 0.422840 4.2:-35771207 None:intergenic
CAAGAGAGCTCAAGGTTAAG+AGG 0.423035 4.2:+35772353 MS.gene062935:CDS
GTCGGAGAGAGAAGGGAGAG+AGG 0.429052 4.2:-35770877 None:intergenic
ATACTATGCAAGCTATTGAT+TGG 0.430909 4.2:-35772268 None:intergenic
TTGTTGGGAGGGAGAAGGGA+TGG 0.433208 4.2:-35770822 None:intergenic
GATGAGTGTTGAAGAAATAA+GGG 0.433460 4.2:+35772213 MS.gene062935:CDS
GCAGCCACAACACCAGAATC+AGG 0.436019 4.2:-35771860 None:intergenic
TTGAAGAAGCGGTTGTTGTT+GGG 0.436751 4.2:-35770837 None:intergenic
TTGCTGTGAGGGATCCGTTT+GGG 0.437418 4.2:+35771522 MS.gene062935:CDS
TTTGGAGGAAGTGAGGAAAA+GGG 0.443047 4.2:-35770910 None:intergenic
GTTGTTGTTGGGAGGGAGAA+GGG 0.448820 4.2:-35770826 None:intergenic
GTTGAAGAAGCGGTTGTTGT+TGG 0.450569 4.2:-35770838 None:intergenic
GGAACAAATTGATGGTGGTT+GGG 0.451957 4.2:+35772414 MS.gene062935:CDS
TGATTGTGGTTGATAATAAT+GGG 0.454958 4.2:+35771660 MS.gene062935:CDS
AATAGCTTGCATAGTATGTT+GGG 0.456007 4.2:+35772274 MS.gene062935:CDS
TCTGGTGTTGTGGCTGCGCT+TGG 0.458740 4.2:+35771866 MS.gene062935:CDS
TATGAATCACGTAGGCGATT+TGG 0.462036 4.2:+35771785 MS.gene062935:CDS
CAATAGCTTGCATAGTATGT+TGG 0.465848 4.2:+35772273 MS.gene062935:CDS
ATCACAACATCACAATCAAC+AGG 0.467162 4.2:-35771830 None:intergenic
TTTGTTATGCTTGTTTCTCT+GGG 0.472388 4.2:+35772314 MS.gene062935:CDS
CTTGGTTATGCTGCGAAAGC+CGG 0.474447 4.2:+35771884 MS.gene062935:CDS
GGTTGTTGTTGGGAGGGAGA+AGG 0.476572 4.2:-35770827 None:intergenic
GGGAGTTTGGAACAAATTGA+TGG 0.485386 4.2:+35772406 MS.gene062935:CDS
CATGTTCGTTATTCTACTGC+TGG 0.487415 4.2:+35771227 MS.gene062935:CDS
TTGAAGAACGTTGTTGTTAA+CGG 0.487917 4.2:-35771123 None:intergenic
GTTGCTGTGAGGGATCCGTT+TGG 0.488507 4.2:+35771521 MS.gene062935:CDS
GTTGTTAACGGTGACGATCC+CGG 0.488654 4.2:-35771111 None:intergenic
ACCGCGGCCAAGAAGGCGCC+GGG 0.491418 4.2:+35771093 MS.gene062935:CDS
GGAAAACATCCTCGTCTTGT+GGG 0.492354 4.2:-35770971 None:intergenic
CTCCAACACCGCGGCCAAGA+AGG 0.497456 4.2:+35771086 MS.gene062935:CDS
CTTCAATCCATCACCGGTGT+TGG 0.497665 4.2:+35771140 MS.gene062935:CDS
GGTTTAGGCCTTTGGTTATG+GGG 0.500914 4.2:+35771543 MS.gene062935:CDS
TGAGCCGTCTCAGAAGATTA+GGG 0.501845 4.2:+35771961 MS.gene062935:CDS
GACAAGACCAACACCGGTGA+TGG 0.504668 4.2:-35771147 None:intergenic
TGCTCAAAGATACACTGCTT+CGG 0.506723 4.2:-35771716 None:intergenic
TGGAACAAATTGATGGTGGT+TGG 0.506884 4.2:+35772413 MS.gene062935:CDS
GAGCTCAAGGTTAAGAGGGT+TGG 0.509152 4.2:+35772358 MS.gene062935:CDS
TTTGTTGGAGAGGATGATGT+CGG 0.510776 4.2:-35770943 None:intergenic
TGGAAGAAAAGCAAGTGAAT+CGG 0.512363 4.2:-35772248 None:intergenic
AAAGAGGTGAATACTGCTAC+TGG 0.516631 4.2:+35772457 MS.gene062935:CDS
TTCTATTGTGTTTGTTACCG+AGG 0.517084 4.2:+35771490 MS.gene062935:CDS
TTGGAGGAAGTGAGGAAAAG+GGG 0.517107 4.2:-35770909 None:intergenic
CACCGCGGCCAAGAAGGCGC+CGG 0.518932 4.2:+35771092 MS.gene062935:CDS
CACGAGGCTTGTCGTCGTTG+AGG 0.520175 4.2:-35770992 None:intergenic
GTGAGGTTGCTTAAGGAAGC+TGG 0.520822 4.2:+35772091 MS.gene062935:CDS
GAAAAGGGGTTTACGGGTGT+CGG 0.521257 4.2:-35770895 None:intergenic
AAACGGTACCCAGCAACAAA+AGG 0.521430 4.2:-35771275 None:intergenic
TCGGAGAGAGAAGGGAGAGA+GGG 0.522057 4.2:-35770876 None:intergenic
TCTCAGAAGATTAGGGACTT+TGG 0.526450 4.2:+35771968 MS.gene062935:CDS
AGGAAAACATCCTCGTCTTG+TGG 0.526596 4.2:-35770972 None:intergenic
TTGTTGATGATGGTTTGAAT+GGG 0.530340 4.2:+35772386 MS.gene062935:CDS
GGATAAGCTTGTTGCTGTGA+GGG 0.531703 4.2:+35771511 MS.gene062935:CDS
TCCCGGCGCCTTCTTGGCCG+CGG 0.532251 4.2:-35771094 None:intergenic
AAGAAGCGGTTGTTGTTGGG+AGG 0.533885 4.2:-35770834 None:intergenic
GGAGGGCTAAGTAGCAGAGA+CGG 0.535500 4.2:-35771058 None:intergenic
TGTTCCTGATTCTGGTGTTG+TGG 0.536036 4.2:+35771856 MS.gene062935:CDS
ACAAAACTCGATCAGTTACC+CGG 0.539167 4.2:+35771188 MS.gene062935:CDS
TTTCCCTGGTGAGGTGATTG+TGG 0.539786 4.2:+35771646 MS.gene062935:CDS
TGGTTCTTGTTACTATGGTG+TGG 0.539936 4.2:+35772156 MS.gene062935:CDS
GATATCAACTCCTCTGAGCT+AGG 0.540111 4.2:-35772184 None:intergenic
AAGATACACTGCTTCGGCTG+CGG 0.540981 4.2:-35771710 None:intergenic
AGAAGCGGTTGTTGTTGGGA+GGG 0.543704 4.2:-35770833 None:intergenic
GAGGGCTAAGTAGCAGAGAC+GGG 0.544400 4.2:-35771057 None:intergenic
TCAACCACAATCACCTCACC+AGG 0.547964 4.2:-35771650 None:intergenic
GGCCGCGGTGTTGGAGAGCG+TGG 0.550054 4.2:-35771079 None:intergenic
ACCAAAGGCCTAAACCCAAA+CGG 0.556825 4.2:-35771536 None:intergenic
TTACGGGTGTCGGAGAGAGA+AGG 0.557004 4.2:-35770885 None:intergenic
GATTGAAGCTACTTATGAGA+GGG 0.557263 4.2:+35771619 MS.gene062935:CDS
TGCTGTGCTTGAAGGTAAAA+GGG 0.558567 4.2:+35772018 MS.gene062935:CDS
TAACAAGAACCAATAATTGG+TGG 0.560555 4.2:-35772145 None:intergenic
GCGGTGTTGGAGAGCGTGGA+GGG 0.560878 4.2:-35771075 None:intergenic
CCCTTGTTGAAAAGGAACAC+CGG 0.561790 4.2:-35771903 None:intergenic
AGCCAACAGAAATCCAAAAG+AGG 0.563771 4.2:+35772441 MS.gene062935:CDS
TTAGGCCTTTGGTTATGGGG+AGG 0.567193 4.2:+35771546 MS.gene062935:CDS
CACAGCAACAAGCTTATCCT+CGG 0.568347 4.2:-35771507 None:intergenic
GATGCATGTGAGAAGCTTGA+AGG 0.569398 4.2:+35771461 MS.gene062935:CDS
CAACACCCACAGAACCAAAA+CGG 0.569611 4.2:-35771292 None:intergenic
TTGATTAGGTCACACTATGT+AGG 0.570960 4.2:+35771926 MS.gene062935:CDS
GGAGGTTTGTGTTGAAGAAG+CGG 0.572584 4.2:-35770848 None:intergenic
CCTTCAAGCACAGCACGGAC+CGG 0.573470 4.2:-35772010 None:intergenic
TGTGAAGTTGAAGCTTTCAC+CGG 0.573769 4.2:+35771991 MS.gene062935:CDS
AAGAGAGCTCAAGGTTAAGA+GGG 0.575571 4.2:+35772354 MS.gene062935:CDS
TTGTTGATGATTCAATTGTG+AGG 0.577918 4.2:+35772047 MS.gene062935:CDS
AACGTTCTTCAATCCATCAC+CGG 0.584401 4.2:+35771134 MS.gene062935:CDS
TGTTGATGATTCAATTGTGA+GGG 0.586634 4.2:+35772048 MS.gene062935:CDS
TGAAGCTACTTATGAGAGGG+AGG 0.587839 4.2:+35771622 MS.gene062935:CDS
TACGGGTGTCGGAGAGAGAA+GGG 0.589095 4.2:-35770884 None:intergenic
TGATTGAAGCTACTTATGAG+AGG 0.590354 4.2:+35771618 MS.gene062935:CDS
GTTATGGGGAGGAGAAGTAA+TGG 0.595209 4.2:+35771557 MS.gene062935:CDS
TGTTGAACCAAGAGAGCTCA+AGG 0.596313 4.2:+35772345 MS.gene062935:CDS
AAACATCCTCGTCTTGTGGG+TGG 0.606526 4.2:-35770968 None:intergenic
ATCGGAGACAAGACCAACAC+CGG 0.609069 4.2:-35771153 None:intergenic
CGCGGTGTTGGAGAGCGTGG+AGG 0.613758 4.2:-35771076 None:intergenic
CAGCAGTAGAATAACGAACA+TGG 0.626295 4.2:-35771226 None:intergenic
AGGATAAGCTTGTTGCTGTG+AGG 0.627037 4.2:+35771510 MS.gene062935:CDS
CAACATCGTCGAAGATTGTG+AGG 0.634583 4.2:+35772074 MS.gene062935:CDS
TCTGTGGGTGTTGCTCATAA+CGG 0.634744 4.2:+35771302 MS.gene062935:CDS
AGAAGAGAGAGTTTGAGCTG+CGG 0.634768 4.2:-35770787 None:intergenic
CTTCTCCTCCCCATAACCAA+AGG 0.635089 4.2:-35771551 None:intergenic
AAGTCCCTAATCTTCTGAGA+CGG 0.638630 4.2:-35771965 None:intergenic
ATCACGTAGGCGATTTGGTG+AGG 0.640246 4.2:+35771790 MS.gene062935:CDS
TTAGGTCACACTATGTAGGA+AGG 0.643224 4.2:+35771930 MS.gene062935:CDS
TGAGCTCTCTTGGTTCAACA+GGG 0.647432 4.2:-35772342 None:intergenic
AGTTTGGAACAAATTGATGG+TGG 0.649376 4.2:+35772409 MS.gene062935:CDS
ACAACTCCGCACTCTTCACG+AGG 0.650501 4.2:-35771008 None:intergenic
TTACCCGGAAGCTTAGCCAT+CGG 0.652209 4.2:+35771203 MS.gene062935:CDS
GACAAGCCTCGTGAAGAGTG+CGG 0.664911 4.2:+35771002 MS.gene062935:CDS
AGAATAACGAACATGGCCGA+TGG 0.666671 4.2:-35771219 None:intergenic
GTGCAAAAGAAGTTCACATG+AGG 0.670165 4.2:+35772113 MS.gene062935:CDS
GTTGATGATTCAATTGTGAG+GGG 0.670311 4.2:+35772049 MS.gene062935:CDS
GGCTAAGTAGCAGAGACGGG+AGG 0.683072 4.2:-35771054 None:intergenic
TGTGGATACACCTAGCTCAG+AGG 0.694828 4.2:+35772174 MS.gene062935:CDS
GGTCTGTGTATGAATCACGT+AGG 0.739465 4.2:+35771777 MS.gene062935:CDS
CAACCACAATCACCTCACCA+GGG 0.745503 4.2:-35771649 None:intergenic
CTCCACGCTCTCCAACACCG+CGG 0.815634 4.2:+35771077 MS.gene062935:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAGCATAACAAAAATT+AGG - chr4.2:35772310-35772329 None:intergenic 20.0%
!! TCAACAATTCTCAAAATAAA+AGG - chr4.2:35771443-35771462 None:intergenic 20.0%
! TAGTAACAAGAACCAATAAT+TGG - chr4.2:35772151-35772170 None:intergenic 25.0%
!! GAAGAAATAAGGGATTTTAT+TGG + chr4.2:35772223-35772242 MS.gene062935:CDS 25.0%
!!! ATTATTGGTTCTTGTTACTA+TGG + chr4.2:35772151-35772170 MS.gene062935:CDS 25.0%
!!! TGATTGTGGTTGATAATAAT+GGG + chr4.2:35771660-35771679 MS.gene062935:CDS 25.0%
!!! TTTTGTTTCGTTGAATACAT+CGG - chr4.2:35771174-35771193 None:intergenic 25.0%
ATACTATGCAAGCTATTGAT+TGG - chr4.2:35772271-35772290 None:intergenic 30.0%
CTACCAAAAACAACAGAATT+AGG - chr4.2:35771758-35771777 None:intergenic 30.0%
TAACAAGAACCAATAATTGG+TGG - chr4.2:35772148-35772167 None:intergenic 30.0%
! AATAGCTTGCATAGTATGTT+GGG + chr4.2:35772274-35772293 MS.gene062935:CDS 30.0%
! TTGAAGAACGTTGTTGTTAA+CGG - chr4.2:35771126-35771145 None:intergenic 30.0%
! TTTGTTATGCTTGTTTCTCT+GGG + chr4.2:35772314-35772333 MS.gene062935:CDS 30.0%
!! GATGAGTGTTGAAGAAATAA+GGG + chr4.2:35772213-35772232 MS.gene062935:CDS 30.0%
!! GTGATTGTGGTTGATAATAA+TGG + chr4.2:35771659-35771678 MS.gene062935:CDS 30.0%
!! TGTTGATGATTCAATTGTGA+GGG + chr4.2:35772048-35772067 MS.gene062935:CDS 30.0%
!! TTGTTGATGATGGTTTGAAT+GGG + chr4.2:35772386-35772405 MS.gene062935:CDS 30.0%
!! TTGTTGATGATTCAATTGTG+AGG + chr4.2:35772047-35772066 MS.gene062935:CDS 30.0%
!! TTTGTTGATGATGGTTTGAA+TGG + chr4.2:35772385-35772404 MS.gene062935:CDS 30.0%
!! TTTTGTTATGCTTGTTTCTC+TGG + chr4.2:35772313-35772332 MS.gene062935:CDS 30.0%
!!! CTAATTCTGTTGTTTTTGGT+AGG + chr4.2:35771756-35771775 MS.gene062935:CDS 30.0%
!!! TTGCCTAATTCTGTTGTTTT+TGG + chr4.2:35771752-35771771 MS.gene062935:CDS 30.0%
AGAGCTAAGCTTGAAGATAA+AGG + chr4.2:35771350-35771369 MS.gene062935:CDS 35.0%
ATCACAACATCACAATCAAC+AGG - chr4.2:35771833-35771852 None:intergenic 35.0%
ATTGCAAGTCCACCAATTAT+TGG + chr4.2:35772136-35772155 MS.gene062935:CDS 35.0%
CTAATCAACCCTTGTTGAAA+AGG - chr4.2:35771914-35771933 None:intergenic 35.0%
GATTGAAGCTACTTATGAGA+GGG + chr4.2:35771619-35771638 MS.gene062935:CDS 35.0%
TGATTGAAGCTACTTATGAG+AGG + chr4.2:35771618-35771637 MS.gene062935:CDS 35.0%
TGGAAGAAAAGCAAGTGAAT+CGG - chr4.2:35772251-35772270 None:intergenic 35.0%
TTGATTAGGTCACACTATGT+AGG + chr4.2:35771926-35771945 MS.gene062935:CDS 35.0%
! AATGTTCAACCTTTTGTTGC+TGG + chr4.2:35771266-35771285 MS.gene062935:CDS 35.0%
! AGTTTGGAACAAATTGATGG+TGG + chr4.2:35772409-35772428 MS.gene062935:CDS 35.0%
! ATGTTCAACCTTTTGTTGCT+GGG + chr4.2:35771267-35771286 MS.gene062935:CDS 35.0%
! CAATAGCTTGCATAGTATGT+TGG + chr4.2:35772273-35772292 MS.gene062935:CDS 35.0%
! TTCTATTGTGTTTGTTACCG+AGG + chr4.2:35771490-35771509 MS.gene062935:CDS 35.0%
!! CAGAGGAGTTGATATCTAAT+AGG + chr4.2:35772191-35772210 MS.gene062935:CDS 35.0%
!! CTTTTCAACAAGGGTTGATT+AGG + chr4.2:35771912-35771931 MS.gene062935:CDS 35.0%
!! GGATGAGTGTTGAAGAAATA+AGG + chr4.2:35772212-35772231 MS.gene062935:CDS 35.0%
!! GTTGATGATTCAATTGTGAG+GGG + chr4.2:35772049-35772068 MS.gene062935:CDS 35.0%
AAAGAGGTGAATACTGCTAC+TGG + chr4.2:35772457-35772476 MS.gene062935:CDS 40.0%
AACGTTCTTCAATCCATCAC+CGG + chr4.2:35771134-35771153 MS.gene062935:CDS 40.0%
AAGAGAGCTCAAGGTTAAGA+GGG + chr4.2:35772354-35772373 MS.gene062935:CDS 40.0%
AAGTGAGGAAAAGGGGTTTA+CGG - chr4.2:35770905-35770924 None:intergenic 40.0%
ACAAAACTCGATCAGTTACC+CGG + chr4.2:35771188-35771207 MS.gene062935:CDS 40.0%
AGAGGATGATGTCGGAAATT+GGG - chr4.2:35770938-35770957 None:intergenic 40.0%
AGCCAACAGAAATCCAAAAG+AGG + chr4.2:35772441-35772460 MS.gene062935:CDS 40.0%
CAGCAGTAGAATAACGAACA+TGG - chr4.2:35771229-35771248 None:intergenic 40.0%
CATGTTCGTTATTCTACTGC+TGG + chr4.2:35771227-35771246 MS.gene062935:CDS 40.0%
GAAGATTGTGAGGTTGCTTA+AGG + chr4.2:35772084-35772103 MS.gene062935:CDS 40.0%
GATTCAATCGCTCTGTTTGA+TGG + chr4.2:35771682-35771701 MS.gene062935:CDS 40.0%
GTGCAAAAGAAGTTCACATG+AGG + chr4.2:35772113-35772132 MS.gene062935:CDS 40.0%
TATGAATCACGTAGGCGATT+TGG + chr4.2:35771785-35771804 MS.gene062935:CDS 40.0%
TCTCAGAAGATTAGGGACTT+TGG + chr4.2:35771968-35771987 MS.gene062935:CDS 40.0%
TGATGGTTTGAATGGGAGTT+TGG + chr4.2:35772393-35772412 MS.gene062935:CDS 40.0%
TGCTCAAAGATACACTGCTT+CGG - chr4.2:35771719-35771738 None:intergenic 40.0%
TGCTGTGCTTGAAGGTAAAA+GGG + chr4.2:35772018-35772037 MS.gene062935:CDS 40.0%
TGGTTCTTGTTACTATGGTG+TGG + chr4.2:35772156-35772175 MS.gene062935:CDS 40.0%
TGTGAAGTTGAAGCTTTCAC+CGG + chr4.2:35771991-35772010 MS.gene062935:CDS 40.0%
TTAGGTCACACTATGTAGGA+AGG + chr4.2:35771930-35771949 MS.gene062935:CDS 40.0%
TTTGGAGGAAGTGAGGAAAA+GGG - chr4.2:35770913-35770932 None:intergenic 40.0%
TTTGTTGGAGAGGATGATGT+CGG - chr4.2:35770946-35770965 None:intergenic 40.0%
! AAGTCCCTAATCTTCTGAGA+CGG - chr4.2:35771968-35771987 None:intergenic 40.0%
! CACCTCTTTTGGATTTCTGT+TGG - chr4.2:35772446-35772465 None:intergenic 40.0%
! GATGTCGGAAATTGGGTTTT+TGG - chr4.2:35770931-35770950 None:intergenic 40.0%
! GGGAGTTTGGAACAAATTGA+TGG + chr4.2:35772406-35772425 MS.gene062935:CDS 40.0%
! GTAGCAGTATTCACCTCTTT+TGG - chr4.2:35772457-35772476 None:intergenic 40.0%
! TTGAAGAAGCGGTTGTTGTT+GGG - chr4.2:35770840-35770859 None:intergenic 40.0%
! TTTTACCTTCAAGCACAGCA+CGG - chr4.2:35772018-35772037 None:intergenic 40.0%
!! GGAACAAATTGATGGTGGTT+GGG + chr4.2:35772414-35772433 MS.gene062935:CDS 40.0%
!! GTTGGTGACTTTGTTGATGA+TGG + chr4.2:35772376-35772395 MS.gene062935:CDS 40.0%
!! TGGAACAAATTGATGGTGGT+TGG + chr4.2:35772413-35772432 MS.gene062935:CDS 40.0%
!! TTTTGGAGGAAGTGAGGAAA+AGG - chr4.2:35770914-35770933 None:intergenic 40.0%
AAACGGTACCCAGCAACAAA+AGG - chr4.2:35771278-35771297 None:intergenic 45.0%
ACCAAAGGCCTAAACCCAAA+CGG - chr4.2:35771539-35771558 None:intergenic 45.0%
AGAAGAGAGAGTTTGAGCTG+CGG - chr4.2:35770790-35770809 None:intergenic 45.0%
AGAATAACGAACATGGCCGA+TGG - chr4.2:35771222-35771241 None:intergenic 45.0%
AGGAAAACATCCTCGTCTTG+TGG - chr4.2:35770975-35770994 None:intergenic 45.0%
AGTGAGGAAAAGGGGTTTAC+GGG - chr4.2:35770904-35770923 None:intergenic 45.0%
CAACACCCACAGAACCAAAA+CGG - chr4.2:35771295-35771314 None:intergenic 45.0%
CAACATCGTCGAAGATTGTG+AGG + chr4.2:35772074-35772093 MS.gene062935:CDS 45.0%
CAAGAGAGCTCAAGGTTAAG+AGG + chr4.2:35772353-35772372 MS.gene062935:CDS 45.0%
CACAGCAACAAGCTTATCCT+CGG - chr4.2:35771510-35771529 None:intergenic 45.0%
CCCTTGTTGAAAAGGAACAC+CGG - chr4.2:35771906-35771925 None:intergenic 45.0%
CTCTTAACCTTGAGCTCTCT+TGG - chr4.2:35772355-35772374 None:intergenic 45.0%
GAGAGGATGATGTCGGAAAT+TGG - chr4.2:35770939-35770958 None:intergenic 45.0%
GATATCAACTCCTCTGAGCT+AGG - chr4.2:35772187-35772206 None:intergenic 45.0%
GATGCATGTGAGAAGCTTGA+AGG + chr4.2:35771461-35771480 MS.gene062935:CDS 45.0%
GGAAAACATCCTCGTCTTGT+GGG - chr4.2:35770974-35770993 None:intergenic 45.0%
GGAGGTTTGTGTTGAAGAAG+CGG - chr4.2:35770851-35770870 None:intergenic 45.0%
GGGTTTAGGCCTTTGGTTAT+GGG + chr4.2:35771542-35771561 MS.gene062935:CDS 45.0%
GGTCTGTGTATGAATCACGT+AGG + chr4.2:35771777-35771796 MS.gene062935:CDS 45.0%
GGTTTAGGCCTTTGGTTATG+GGG + chr4.2:35771543-35771562 MS.gene062935:CDS 45.0%
GTGATAGCTGTTCCTGATTC+TGG + chr4.2:35771848-35771867 MS.gene062935:CDS 45.0%
GTGCTGTGCTTGAAGGTAAA+AGG + chr4.2:35772017-35772036 MS.gene062935:CDS 45.0%
GTTATGGGGAGGAGAAGTAA+TGG + chr4.2:35771557-35771576 MS.gene062935:CDS 45.0%
GTTGAAGAAGCGGTTGTTGT+TGG - chr4.2:35770841-35770860 None:intergenic 45.0%
TGAAGCTACTTATGAGAGGG+AGG + chr4.2:35771622-35771641 MS.gene062935:CDS 45.0%
TGAGCCGTCTCAGAAGATTA+GGG + chr4.2:35771961-35771980 MS.gene062935:CDS 45.0%
TGAGCTCTCTTGGTTCAACA+GGG - chr4.2:35772345-35772364 None:intergenic 45.0%
TGCGGAGTTGTTGGAATCTA+TGG + chr4.2:35771020-35771039 MS.gene062935:CDS 45.0%
TGGGTTTAGGCCTTTGGTTA+TGG + chr4.2:35771541-35771560 MS.gene062935:CDS 45.0%
TGTTGAACCAAGAGAGCTCA+AGG + chr4.2:35772345-35772364 MS.gene062935:CDS 45.0%
TTGAGCCGTCTCAGAAGATT+AGG + chr4.2:35771960-35771979 MS.gene062935:CDS 45.0%
TTGAGCTCTCTTGGTTCAAC+AGG - chr4.2:35772346-35772365 None:intergenic 45.0%
TTGGAGGAAGTGAGGAAAAG+GGG - chr4.2:35770912-35770931 None:intergenic 45.0%
! CCGGTGTTCCTTTTCAACAA+GGG + chr4.2:35771903-35771922 MS.gene062935:CDS 45.0%
! GTCTTGTGGGTGGTTTTTGT+TGG - chr4.2:35770961-35770980 None:intergenic 45.0%
! TGTTCCTGATTCTGGTGTTG+TGG + chr4.2:35771856-35771875 MS.gene062935:CDS 45.0%
!! AGGATAAGCTTGTTGCTGTG+AGG + chr4.2:35771510-35771529 MS.gene062935:CDS 45.0%
!! GAGAAGGGATGGTTTGGTTA+GGG - chr4.2:35770814-35770833 None:intergenic 45.0%
!! GGATAAGCTTGTTGCTGTGA+GGG + chr4.2:35771511-35771530 MS.gene062935:CDS 45.0%
!! GTCGGAAATTGGGTTTTTGG+AGG - chr4.2:35770928-35770947 None:intergenic 45.0%
!! TCTGTGGGTGTTGCTCATAA+CGG + chr4.2:35771302-35771321 MS.gene062935:CDS 45.0%
!! TTGGGTTTTTGGAGGAAGTG+AGG - chr4.2:35770920-35770939 None:intergenic 45.0%
!! TTTGTTGCTGGGTACCGTTT+TGG + chr4.2:35771278-35771297 MS.gene062935:CDS 45.0%
AAACATCCTCGTCTTGTGGG+TGG - chr4.2:35770971-35770990 None:intergenic 50.0%
AAGATACACTGCTTCGGCTG+CGG - chr4.2:35771713-35771732 None:intergenic 50.0%
ATCGGAGACAAGACCAACAC+CGG - chr4.2:35771156-35771175 None:intergenic 50.0%
CAAAAACCACCCACAAGACG+AGG + chr4.2:35770962-35770981 MS.gene062935:CDS 50.0%
CAACCACAATCACCTCACCA+GGG - chr4.2:35771652-35771671 None:intergenic 50.0%
CTTCAATCCATCACCGGTGT+TGG + chr4.2:35771140-35771159 MS.gene062935:CDS 50.0%
CTTCTCCTCCCCATAACCAA+AGG - chr4.2:35771554-35771573 None:intergenic 50.0%
CTTGGTTATGCTGCGAAAGC+CGG + chr4.2:35771884-35771903 MS.gene062935:CDS 50.0%
GAAAAGGGGTTTACGGGTGT+CGG - chr4.2:35770898-35770917 None:intergenic 50.0%
GAGCTCAAGGTTAAGAGGGT+TGG + chr4.2:35772358-35772377 MS.gene062935:CDS 50.0%
GTGAGGTTGCTTAAGGAAGC+TGG + chr4.2:35772091-35772110 MS.gene062935:CDS 50.0%
GTTGTTAACGGTGACGATCC+CGG - chr4.2:35771114-35771133 None:intergenic 50.0%
TCAACCACAATCACCTCACC+AGG - chr4.2:35771653-35771672 None:intergenic 50.0%
TGTGGATACACCTAGCTCAG+AGG + chr4.2:35772174-35772193 MS.gene062935:CDS 50.0%
TTACCCGGAAGCTTAGCCAT+CGG + chr4.2:35771203-35771222 MS.gene062935:CDS 50.0%
TTAGGCCTTTGGTTATGGGG+AGG + chr4.2:35771546-35771565 MS.gene062935:CDS 50.0%
TTGCTGTGAGGGATCCGTTT+GGG + chr4.2:35771522-35771541 MS.gene062935:CDS 50.0%
TTTCCCTGGTGAGGTGATTG+TGG + chr4.2:35771646-35771665 MS.gene062935:CDS 50.0%
! AAGAAGCGGTTGTTGTTGGG+AGG - chr4.2:35770837-35770856 None:intergenic 50.0%
! AGAAGCGGTTGTTGTTGGGA+GGG - chr4.2:35770836-35770855 None:intergenic 50.0%
! AGAGAAGGGAGAGAGGGTTT+TGG - chr4.2:35770873-35770892 None:intergenic 50.0%
! GAGAAGGGAGAGAGGGTTTT+GGG - chr4.2:35770872-35770891 None:intergenic 50.0%
! GCCGGTGTTCCTTTTCAACA+AGG + chr4.2:35771902-35771921 MS.gene062935:CDS 50.0%
! GTGGGTGGTTTTTGTTGGAG+AGG - chr4.2:35770956-35770975 None:intergenic 50.0%
! GTTGTTGTTGGGAGGGAGAA+GGG - chr4.2:35770829-35770848 None:intergenic 50.0%
! TATGAGAGGGAGGTTTTCCC+TGG + chr4.2:35771632-35771651 MS.gene062935:CDS 50.0%
! TCCGTTTGGGTTTAGGCCTT+TGG + chr4.2:35771535-35771554 MS.gene062935:CDS 50.0%
! TGAGGGATCCGTTTGGGTTT+AGG + chr4.2:35771528-35771547 MS.gene062935:CDS 50.0%
!! ATCACGTAGGCGATTTGGTG+AGG + chr4.2:35771790-35771809 MS.gene062935:CDS 50.0%
!! GGAGAAGGGATGGTTTGGTT+AGG - chr4.2:35770815-35770834 None:intergenic 50.0%
!!! GGGTACCGTTTTGGTTCTGT+GGG + chr4.2:35771287-35771306 MS.gene062935:CDS 50.0%
!!! TGGGTACCGTTTTGGTTCTG+TGG + chr4.2:35771286-35771305 MS.gene062935:CDS 50.0%
ACAACTCCGCACTCTTCACG+AGG - chr4.2:35771011-35771030 None:intergenic 55.0%
ATGGCCGATGGCTAAGCTTC+CGG - chr4.2:35771210-35771229 None:intergenic 55.0%
GACAAGACCAACACCGGTGA+TGG - chr4.2:35771150-35771169 None:intergenic 55.0%
GACAAGCCTCGTGAAGAGTG+CGG + chr4.2:35771002-35771021 MS.gene062935:CDS 55.0%
GAGGGCTAAGTAGCAGAGAC+GGG - chr4.2:35771060-35771079 None:intergenic 55.0%
GCAGCCACAACACCAGAATC+AGG - chr4.2:35771863-35771882 None:intergenic 55.0%
GGAGGGCTAAGTAGCAGAGA+CGG - chr4.2:35771061-35771080 None:intergenic 55.0%
GTTGCTGTGAGGGATCCGTT+TGG + chr4.2:35771521-35771540 MS.gene062935:CDS 55.0%
TCGGAGAGAGAAGGGAGAGA+GGG - chr4.2:35770879-35770898 None:intergenic 55.0%
TTGTTGGGAGGGAGAAGGGA+TGG - chr4.2:35770825-35770844 None:intergenic 55.0%
! CGTGAAGAGTGCGGAGTTGT+TGG + chr4.2:35771011-35771030 MS.gene062935:CDS 55.0%
! GGTTGTTGTTGGGAGGGAGA+AGG - chr4.2:35770830-35770849 None:intergenic 55.0%
!! TACGGGTGTCGGAGAGAGAA+GGG - chr4.2:35770887-35770906 None:intergenic 55.0%
!! TTACGGGTGTCGGAGAGAGA+AGG - chr4.2:35770888-35770907 None:intergenic 55.0%
!!! AAGGGAGAGAGGGTTTTGGG+AGG - chr4.2:35770869-35770888 None:intergenic 55.0%
CACGAGGCTTGTCGTCGTTG+AGG - chr4.2:35770995-35771014 None:intergenic 60.0%
CCTTCAAGCACAGCACGGAC+CGG - chr4.2:35772013-35772032 None:intergenic 60.0%
GGCTAAGTAGCAGAGACGGG+AGG - chr4.2:35771057-35771076 None:intergenic 60.0%
GGGAGGGAGAAGGGATGGTT+TGG - chr4.2:35770820-35770839 None:intergenic 60.0%
GTCGGAGAGAGAAGGGAGAG+AGG - chr4.2:35770880-35770899 None:intergenic 60.0%
TGGCCGATGGCTAAGCTTCC+GGG - chr4.2:35771209-35771228 None:intergenic 60.0%
! GAGGGAGGTTTTCCCTGGTG+AGG + chr4.2:35771637-35771656 MS.gene062935:CDS 60.0%
!! TCTGGTGTTGTGGCTGCGCT+TGG + chr4.2:35771866-35771885 MS.gene062935:CDS 60.0%
CCGGTCCGTGCTGTGCTTGA+AGG + chr4.2:35772010-35772029 MS.gene062935:CDS 65.0%
CTCCAACACCGCGGCCAAGA+AGG + chr4.2:35771086-35771105 MS.gene062935:CDS 65.0%
CTCCACGCTCTCCAACACCG+CGG + chr4.2:35771077-35771096 MS.gene062935:CDS 65.0%
TGACGATCCCGGCGCCTTCT+TGG - chr4.2:35771103-35771122 None:intergenic 65.0%
! GCGGTGTTGGAGAGCGTGGA+GGG - chr4.2:35771078-35771097 None:intergenic 65.0%
CGCCTTCTTGGCCGCGGTGT+TGG - chr4.2:35771091-35771110 None:intergenic 70.0%
! CGCGGTGTTGGAGAGCGTGG+AGG - chr4.2:35771079-35771098 None:intergenic 70.0%
TCCCGGCGCCTTCTTGGCCG+CGG - chr4.2:35771097-35771116 None:intergenic 75.0%
! CACCGCGGCCAAGAAGGCGC+CGG + chr4.2:35771092-35771111 MS.gene062935:CDS 75.0%
! GGCCGCGGTGTTGGAGAGCG+TGG - chr4.2:35771082-35771101 None:intergenic 75.0%
!! ACCGCGGCCAAGAAGGCGCC+GGG + chr4.2:35771093-35771112 MS.gene062935:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 35770783 35772486 35770783 ID=MS.gene062935
chr4.2 mRNA 35770783 35772486 35770783 ID=MS.gene062935.t1;Parent=MS.gene062935
chr4.2 exon 35770783 35772486 35770783 ID=MS.gene062935.t1.exon1;Parent=MS.gene062935.t1
chr4.2 CDS 35770783 35772486 35770783 ID=cds.MS.gene062935.t1;Parent=MS.gene062935.t1
Gene Sequence

>MS.gene062935

ATGGCCGCAGCTCAAACTCTCTCTTCTTCCCTAACCAAACCATCCCTTCTCCCTCCCAACAACAACCGCTTCTTCAACACAAACCTCCCAAAACCCTCTCTCCCTTCTCTCTCCGACACCCGTAAACCCCTTTTCCTCACTTCCTCCAAAAACCCAATTTCCGACATCATCCTCTCCAACAAAAACCACCCACAAGACGAGGATGTTTTCCTCAACGACGACAAGCCTCGTGAAGAGTGCGGAGTTGTTGGAATCTATGGCGACTCAGAAGCCTCCCGTCTCTGCTACTTAGCCCTCCACGCTCTCCAACACCGCGGCCAAGAAGGCGCCGGGATCGTCACCGTTAACAACAACGTTCTTCAATCCATCACCGGTGTTGGTCTTGTCTCCGATGTATTCAACGAAACAAAACTCGATCAGTTACCCGGAAGCTTAGCCATCGGCCATGTTCGTTATTCTACTGCTGGACAGTCTATGTTGAAGAATGTTCAACCTTTTGTTGCTGGGTACCGTTTTGGTTCTGTGGGTGTTGCTCATAACGGTAATTTAGTTAATTATCGTACTTTAAGAGCTAAGCTTGAAGATAAAGGTTCGATTTTTAACACTACTTCTGATACTGAAGTTGTTCTTCATTTGATTGCTACTTCAAAGCATAGACCTTTTATTTTGAGAATTGTTGATGCATGTGAGAAGCTTGAAGGTGCTTATTCTATTGTGTTTGTTACCGAGGATAAGCTTGTTGCTGTGAGGGATCCGTTTGGGTTTAGGCCTTTGGTTATGGGGAGGAGAAGTAATGGTGCTGTTGTTTTTGCTTCTGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTATGAGAGGGAGGTTTTCCCTGGTGAGGTGATTGTGGTTGATAATAATGGGATTCAATCGCTCTGTTTGATGGCGCATCCGCAGCCGAAGCAGTGTATCTTTGAGCATATTTACTTTGCTTTGCCTAATTCTGTTGTTTTTGGTAGGTCTGTGTATGAATCACGTAGGCGATTTGGTGAGGTGCTTGCTACTGAGAGTCCTGTTGATTGTGATGTTGTGATAGCTGTTCCTGATTCTGGTGTTGTGGCTGCGCTTGGTTATGCTGCGAAAGCCGGTGTTCCTTTTCAACAAGGGTTGATTAGGTCACACTATGTAGGAAGGACTTTCATTGAGCCGTCTCAGAAGATTAGGGACTTTGGTGTGAAGTTGAAGCTTTCACCGGTCCGTGCTGTGCTTGAAGGTAAAAGGGTTGTTGTTGTTGATGATTCAATTGTGAGGGGAACAACATCGTCGAAGATTGTGAGGTTGCTTAAGGAAGCTGGTGCAAAAGAAGTTCACATGAGGATTGCAAGTCCACCAATTATTGGTTCTTGTTACTATGGTGTGGATACACCTAGCTCAGAGGAGTTGATATCTAATAGGATGAGTGTTGAAGAAATAAGGGATTTTATTGGATCCGATTCACTTGCTTTTCTTCCAATCAATAGCTTGCATAGTATGTTGGGTAATGATTCTCCTAATTTTTGTTATGCTTGTTTCTCTGGGAAATACCCTGTTGAACCAAGAGAGCTCAAGGTTAAGAGGGTTGGTGACTTTGTTGATGATGGTTTGAATGGGAGTTTGGAACAAATTGATGGTGGTTGGGTTCAAGCCAACAGAAATCCAAAAGAGGTGAATACTGCTACTGGTCTTTGA

Protein sequence

>MS.gene062935.t1

MAAAQTLSSSLTKPSLLPPNNNRFFNTNLPKPSLPSLSDTRKPLFLTSSKNPISDIILSNKNHPQDEDVFLNDDKPREECGVVGIYGDSEASRLCYLALHALQHRGQEGAGIVTVNNNVLQSITGVGLVSDVFNETKLDQLPGSLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRTLRAKLEDKGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEKLEGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVIVVDNNGIQSLCLMAHPQPKQCIFEHIYFALPNSVVFGRSVYESRRRFGEVLATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIRDFIGSDSLAFLPINSLHSMLGNDSPNFCYACFSGKYPVEPRELKVKRVGDFVDDGLNGSLEQIDGGWVQANRNPKEVNTATGL