Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063538.t1 | XP_013451745.1 | 91.8 | 784 | 63 | 1 | 1 | 784 | 169 | 951 | 0.00E+00 | 1398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063538.t1 | Q9LYS2 | 60.1 | 794 | 298 | 7 | 1 | 784 | 146 | 930 | 5.1e-262 | 905.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063538.t1 | A0A072U9L8 | 91.8 | 784 | 63 | 1 | 1 | 784 | 169 | 951 | 0.0e+00 | 1398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene063538 | 0.817852 | 2.66E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene063538 | 0.813388 | 2.63E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene063538 | 0.822486 | 2.31E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene063538 | 0.827873 | 1.23E-54 | -1.69E-46 |
| MS.gene053296 | MS.gene063538 | 0.812154 | 4.89E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene063538 | 0.805239 | 1.47E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene063538 | 0.827414 | 1.59E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene063538 | 0.816472 | 5.43E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene063538 | 0.825951 | 3.54E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 139 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGATATTCTATCGTTTCT+AGG | 0.200439 | 6.2:-25057891 | MS.gene063538:CDS |
| AGCCTTTATGCTCCTTTAAA+TGG | 0.205493 | 6.2:-25057801 | MS.gene063538:CDS |
| CCCCGCGTTTGATTGTATTT+TGG | 0.213653 | 6.2:-25055807 | MS.gene063538:intron |
| AAGAGTCCAGCTTTGGAAAA+AGG | 0.242038 | 6.2:+25057741 | None:intergenic |
| TCATTGAACTGACCATTTAA+AGG | 0.245071 | 6.2:+25057789 | None:intergenic |
| GAATGCTGATATATATCTTT+TGG | 0.253058 | 6.2:-25056026 | MS.gene063538:CDS |
| TGACAAGGTCTTGGAATTCT+TGG | 0.253267 | 6.2:+25055556 | None:intergenic |
| CAAACATGAAGGTTGTTTAT+TGG | 0.254849 | 6.2:-25057403 | MS.gene063538:CDS |
| TCTTTACAGTTAATGTCTAA+TGG | 0.259999 | 6.2:-25055624 | MS.gene063538:intron |
| ACGCTATTAGCAACGATTCT+TGG | 0.272612 | 6.2:-25056430 | MS.gene063538:CDS |
| TTTCAATTGGATCTTGAATA+AGG | 0.279670 | 6.2:+25056716 | None:intergenic |
| ATCAATGTTCATGGGAAGTT+TGG | 0.290558 | 6.2:-25056274 | MS.gene063538:CDS |
| CGATTCAGATATTGCAAGTA+TGG | 0.291919 | 6.2:+25055357 | None:intergenic |
| TGTGCATCAACGGCACTAAA+TGG | 0.299310 | 6.2:+25055998 | None:intergenic |
| GCGATCCAGCGTACTATTTC+CGG | 0.299435 | 6.2:+25055461 | None:intergenic |
| TATGGAGACCTCACTGAAAT+AGG | 0.300905 | 6.2:-25056115 | MS.gene063538:CDS |
| GATTCTGAATGAATTTATAT+TGG | 0.311476 | 6.2:-25057448 | MS.gene063538:CDS |
| CTTTACAGTTAATGTCTAAT+GGG | 0.317090 | 6.2:-25055623 | MS.gene063538:intron |
| GAATCGGAGAATTTCCATTC+TGG | 0.347627 | 6.2:-25057182 | MS.gene063538:CDS |
| TCCCACAGACATTCAACTTC+CGG | 0.347899 | 6.2:-25055480 | MS.gene063538:CDS |
| ATGATCGCTGCAATAACTTC+TGG | 0.349198 | 6.2:+25056688 | None:intergenic |
| TAAAGGCTTTCACCATTTAC+AGG | 0.355943 | 6.2:+25057816 | None:intergenic |
| CGGTCAAACACTCTTAACTT+TGG | 0.360778 | 6.2:+25057642 | None:intergenic |
| CTTTATTAGAAAGATTGATA+TGG | 0.363515 | 6.2:+25057380 | None:intergenic |
| CTGGAAGAAGAAAGAGAGAT+AGG | 0.365791 | 6.2:-25055396 | MS.gene063538:CDS |
| AGTTATTGCAGCGATCATTC+AGG | 0.372049 | 6.2:-25056683 | MS.gene063538:CDS |
| GGGTCAAGAGAAAACACTTT+TGG | 0.375068 | 6.2:-25057676 | MS.gene063538:CDS |
| ATGTCGTAAAGATAATTATA+TGG | 0.378443 | 6.2:+25056836 | None:intergenic |
| CATTCTGGTTTCACCAGACT+TGG | 0.380789 | 6.2:-25057167 | MS.gene063538:CDS |
| AATGTTAAGTCTATCAAATT+CGG | 0.385611 | 6.2:-25057262 | MS.gene063538:CDS |
| ATCTTGCGCGACCATGAGTT+GGG | 0.396659 | 6.2:+25057005 | None:intergenic |
| CTTGCTAAAGAGTCCAGCTT+TGG | 0.398363 | 6.2:+25057734 | None:intergenic |
| CGCGCAAGATGAGAGATTAA+AGG | 0.401577 | 6.2:-25056992 | MS.gene063538:CDS |
| GACCATTTAAAGGAGCATAA+AGG | 0.402637 | 6.2:+25057799 | None:intergenic |
| AAGTGGAAATCAATTAATTC+TGG | 0.403595 | 6.2:-25055415 | MS.gene063538:CDS |
| ATCATTGATGTTGGCGTCAA+CGG | 0.404150 | 6.2:-25056815 | MS.gene063538:CDS |
| GAATTATAGATCAATGTTCA+TGG | 0.404241 | 6.2:-25056283 | MS.gene063538:intron |
| GAAAGAGAGATAGGAGATAC+AGG | 0.407136 | 6.2:-25055387 | MS.gene063538:CDS |
| GGTCAAACACTCTTAACTTT+GGG | 0.410044 | 6.2:+25057643 | None:intergenic |
| TGTGAAGTCGATCCTGTAAA+TGG | 0.414640 | 6.2:-25057828 | MS.gene063538:CDS |
| GGGCAAAAGGTGGCCATTTG+TGG | 0.417212 | 6.2:-25056475 | MS.gene063538:CDS |
| CATCTTGCGCGACCATGAGT+TGG | 0.426440 | 6.2:+25057004 | None:intergenic |
| TGTGAGCATTGACAAGGTCT+TGG | 0.435281 | 6.2:+25055547 | None:intergenic |
| GACCTTGAGTTGTTTCCCTA+TGG | 0.435817 | 6.2:-25056133 | MS.gene063538:CDS |
| TCTTTAGCAAGATCTCGTTT+TGG | 0.436139 | 6.2:-25057722 | MS.gene063538:CDS |
| GTTGAATCCATTGATGAAAA+CGG | 0.440820 | 6.2:-25057697 | MS.gene063538:CDS |
| GGAGGCTTGTTGTCCAAGTC+TGG | 0.442258 | 6.2:+25057154 | None:intergenic |
| GGTGATATGAACCAGCTTGT+AGG | 0.450768 | 6.2:+25055595 | None:intergenic |
| AAATTTATGTTCCTCAGTGT+TGG | 0.452132 | 6.2:+25056511 | None:intergenic |
| GGAGAAGTTTCTAAAACAAA+AGG | 0.454120 | 6.2:-25056409 | MS.gene063538:CDS |
| TATTTCCGCAGTAGACTTGT+TGG | 0.454292 | 6.2:-25057327 | MS.gene063538:CDS |
| ATATCTTTGATCATCCAATT+CGG | 0.456529 | 6.2:+25056189 | None:intergenic |
| GATATCAAGAAACACTTCAT+AGG | 0.457345 | 6.2:-25056171 | MS.gene063538:CDS |
| GAATTAATTGATTTCCACTT+GGG | 0.465835 | 6.2:+25055418 | None:intergenic |
| TGATCGCTGCAATAACTTCT+GGG | 0.470672 | 6.2:+25056689 | None:intergenic |
| ACTAGCAACACTCGCATCAT+TGG | 0.476276 | 6.2:-25057091 | MS.gene063538:CDS |
| TTGAATCCATTGATGAAAAC+GGG | 0.476454 | 6.2:-25057696 | MS.gene063538:CDS |
| ATCGTGGATGCTTATAGAAT+CGG | 0.476556 | 6.2:-25057198 | MS.gene063538:CDS |
| TTATCAATGCAATACACAAT+TGG | 0.478751 | 6.2:+25057133 | None:intergenic |
| CTTTACGACATCATTGATGT+TGG | 0.481314 | 6.2:-25056824 | MS.gene063538:CDS |
| CAAACAGCATGGATACAAAC+AGG | 0.484884 | 6.2:-25056241 | MS.gene063538:CDS |
| TTATCGAAATCGAGTCTTTG+AGG | 0.487654 | 6.2:+25056572 | None:intergenic |
| GTGGCCATTTGTGGAGAAGT+TGG | 0.489042 | 6.2:-25056466 | MS.gene063538:CDS |
| CATGAAAGTTTCAAACATGA+AGG | 0.489149 | 6.2:-25057414 | MS.gene063538:CDS |
| GTCAGATATTGCAAAACTCA+TGG | 0.493817 | 6.2:-25055275 | MS.gene063538:CDS |
| AGATGTTAGACATGGGCAAA+AGG | 0.495731 | 6.2:-25056488 | MS.gene063538:CDS |
| TGAGCCAACTTCTCCACAAA+TGG | 0.499946 | 6.2:+25056462 | None:intergenic |
| TACGCTGGATCGCGCGTTGA+AGG | 0.506043 | 6.2:-25055451 | MS.gene063538:CDS |
| CATACTTGCAATATCTGAAT+CGG | 0.515818 | 6.2:-25055356 | MS.gene063538:CDS |
| CTTGGCTTGAGCTCAATAGC+TGG | 0.522119 | 6.2:+25055574 | None:intergenic |
| GAATTTATATTGGTTGCTGA+AGG | 0.523275 | 6.2:-25057438 | MS.gene063538:CDS |
| TATTTCAGTGAGGTCTCCAT+AGG | 0.526039 | 6.2:+25056117 | None:intergenic |
| TGAATGTCTGTGGGAAGAAG+AGG | 0.529587 | 6.2:+25055488 | None:intergenic |
| CATGTTCTTCTTAATTGCAC+CGG | 0.531638 | 6.2:+25056859 | None:intergenic |
| TCAATGCAATACACAATTGG+AGG | 0.532210 | 6.2:+25057136 | None:intergenic |
| AAAACCGACGAATGTGATGA+TGG | 0.532483 | 6.2:+25057561 | None:intergenic |
| TATATCATGGAAGGACTGAA+AGG | 0.533911 | 6.2:-25055869 | MS.gene063538:CDS |
| ATTTGTGGAGAAGTTGGCTC+AGG | 0.534907 | 6.2:-25056460 | MS.gene063538:CDS |
| AACTTAACAGGAATATATCA+TGG | 0.537643 | 6.2:-25055882 | MS.gene063538:intron |
| AATTATAGATCAATGTTCAT+GGG | 0.539392 | 6.2:-25056282 | MS.gene063538:intron |
| AAGGTACTCACACTATCTTC+TGG | 0.545705 | 6.2:-25057477 | MS.gene063538:CDS |
| TTCCGGAAGTTGAATGTCTG+TGG | 0.546109 | 6.2:+25055478 | None:intergenic |
| AACACTTCATAGGTCTTCAC+TGG | 0.549913 | 6.2:-25056161 | MS.gene063538:CDS |
| CAAGTCTGGTGAAACCAGAA+TGG | 0.550682 | 6.2:+25057168 | None:intergenic |
| AGCAACACTCGCATCATTGG+CGG | 0.552203 | 6.2:-25057088 | MS.gene063538:CDS |
| ATGAATAACAACTTTCTGCT+CGG | 0.553869 | 6.2:+25057622 | None:intergenic |
| GATATGTTTCTCAAACAGCA+TGG | 0.556780 | 6.2:-25056252 | MS.gene063538:CDS |
| ATATCATGGAAGGACTGAAA+GGG | 0.559097 | 6.2:-25055868 | MS.gene063538:CDS |
| CAATATCTGAATCGGACGAA+AGG | 0.560192 | 6.2:-25055348 | MS.gene063538:CDS |
| CTCACTGAAATAGGCGAGAG+AGG | 0.560901 | 6.2:-25056106 | MS.gene063538:CDS |
| TTATCAAAATCTCTCTCTTG+TGG | 0.566243 | 6.2:+25057520 | None:intergenic |
| AATGCTCACAAGGAGACTGC+TGG | 0.568865 | 6.2:-25055534 | MS.gene063538:CDS |
| AGAATTAATTGATTTCCACT+TGG | 0.569339 | 6.2:+25055417 | None:intergenic |
| CGAACTCAAAGTGTTATCTC+CGG | 0.569440 | 6.2:-25056878 | MS.gene063538:CDS |
| TTTACAGTTAATGTCTAATG+GGG | 0.570052 | 6.2:-25055622 | MS.gene063538:intron |
| TCATAGGTCTTCACTGGCAA+AGG | 0.570200 | 6.2:-25056155 | MS.gene063538:CDS |
| AATATCTAAAGCTGCCTCGA+GGG | 0.571494 | 6.2:+25057905 | None:intergenic |
| TTGTGTTGTAAGTTTGCTAG+TGG | 0.574204 | 6.2:+25057036 | None:intergenic |
| AAGAGGAAACACTCACAAGT+TGG | 0.576802 | 6.2:+25055505 | None:intergenic |
| ATAAATTCATTCAGAATCAG+AGG | 0.586067 | 6.2:+25057453 | None:intergenic |
| TCCGGAAGTTGAATGTCTGT+GGG | 0.586587 | 6.2:+25055479 | None:intergenic |
| AATTAATTGATTTCCACTTG+GGG | 0.588845 | 6.2:+25055419 | None:intergenic |
| AAAACATTACTTGCATTCAG+AGG | 0.590768 | 6.2:+25056760 | None:intergenic |
| ACCAAAATACAATCAAACGC+GGG | 0.594400 | 6.2:+25055806 | None:intergenic |
| TAACAGGAATATATCATGGA+AGG | 0.598955 | 6.2:-25055878 | MS.gene063538:intron |
| GATATTGCAAAACTCATGGA+TGG | 0.602400 | 6.2:-25055271 | MS.gene063538:CDS |
| TCGGCTAGATTGAATCACTC+TGG | 0.602605 | 6.2:-25057243 | MS.gene063538:CDS |
| AGAGGAATTAATTTAAGCGG+AGG | 0.607037 | 6.2:-25056088 | MS.gene063538:CDS |
| TGAACCATCATCACATTCGT+CGG | 0.607235 | 6.2:-25057565 | MS.gene063538:CDS |
| AATAATGAATTATGTTATCG+TGG | 0.613710 | 6.2:-25057214 | MS.gene063538:CDS |
| AATGGGGTAATCCTACAAGC+TGG | 0.614847 | 6.2:-25055606 | MS.gene063538:CDS |
| AATTTCAATGTGTCGATGTG+AGG | 0.616604 | 6.2:+25055231 | None:intergenic |
| AGACCTTGTCAATGCTCACA+AGG | 0.616939 | 6.2:-25055544 | MS.gene063538:CDS |
| CAAGTTTCAAACCCAACTCA+TGG | 0.617661 | 6.2:-25057016 | MS.gene063538:CDS |
| AATCTATATCTCAAAGACAA+TGG | 0.620540 | 6.2:-25057350 | MS.gene063538:CDS |
| ATTTCAGTGAGGTCTCCATA+GGG | 0.626938 | 6.2:+25056118 | None:intergenic |
| GAGAGAGGAATTAATTTAAG+CGG | 0.630117 | 6.2:-25056091 | MS.gene063538:CDS |
| CTCCATAGGGAAACAACTCA+AGG | 0.631717 | 6.2:+25056131 | None:intergenic |
| TCTCCTTGTGAGCATTGACA+AGG | 0.634272 | 6.2:+25055541 | None:intergenic |
| TAAATTTAGATGTTAGACAT+GGG | 0.639951 | 6.2:-25056495 | MS.gene063538:CDS |
| AAGTGTTGAAGCTATATGCA+TGG | 0.640620 | 6.2:-25056942 | MS.gene063538:CDS |
| GAGATTAAAGGCTAGTTCTG+AGG | 0.641445 | 6.2:-25056980 | MS.gene063538:CDS |
| TGTTAGACATGGGCAAAAGG+TGG | 0.643746 | 6.2:-25056485 | MS.gene063538:CDS |
| ATAAATTTAGATGTTAGACA+TGG | 0.644201 | 6.2:-25056496 | MS.gene063538:CDS |
| AACTTCCGGAAATAGTACGC+TGG | 0.645881 | 6.2:-25055466 | MS.gene063538:CDS |
| GTTACCTTCCCATGAAAAGT+CGG | 0.649063 | 6.2:+25056543 | None:intergenic |
| TACCAAAATACAATCAAACG+CGG | 0.650626 | 6.2:+25055805 | None:intergenic |
| AGTGTTGAAGCTATATGCAT+GGG | 0.656885 | 6.2:-25056941 | MS.gene063538:CDS |
| GAATATCTAAAGCTGCCTCG+AGG | 0.657158 | 6.2:+25057904 | None:intergenic |
| AAGGAGTTTATAGCCCCAAG+TGG | 0.660465 | 6.2:-25055432 | MS.gene063538:CDS |
| CCAAAATACAATCAAACGCG+GGG | 0.662371 | 6.2:+25055807 | None:intergenic |
| CTCTCTCGCCTATTTCAGTG+AGG | 0.665046 | 6.2:+25056107 | None:intergenic |
| GCTAGATTGAATCACTCTGG+TGG | 0.679181 | 6.2:-25057240 | MS.gene063538:CDS |
| AAATACAATCAAACGCGGGG+AGG | 0.684670 | 6.2:+25055810 | None:intergenic |
| TCACTCCAACAAGTCTACTG+CGG | 0.695077 | 6.2:+25057322 | None:intergenic |
| GAGCAGTGAACTGTCCCTCG+AGG | 0.708706 | 6.2:-25057919 | None:intergenic |
| GTGTTGCTAGTCCAATTGTG+CGG | 0.710094 | 6.2:+25057103 | None:intergenic |
| TCGCTGCAATAACTTCTGGG+AGG | 0.718234 | 6.2:+25056692 | None:intergenic |
| ACGCATCAAATCCAACACTG+AGG | 0.783514 | 6.2:-25056522 | MS.gene063538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGATCTATAATTCAAAAT+AGG | + | chr6.2:25056849-25056868 | None:intergenic | 15.0% |
| !!! | ACTTAACATTTTTTTATAAG+TGG | + | chr6.2:25055865-25055884 | None:intergenic | 15.0% |
| !!! | ATTAAGTTGAATTATATGAT+AGG | + | chr6.2:25056773-25056792 | None:intergenic | 15.0% |
| !! | AATAATGAATTATGTTATCG+TGG | - | chr6.2:25055923-25055942 | MS.gene063538:intron | 20.0% |
| !! | AATGTTAAGTCTATCAAATT+CGG | - | chr6.2:25055875-25055894 | MS.gene063538:CDS | 20.0% |
| !! | AATTATAGATCAATGTTCAT+GGG | - | chr6.2:25056855-25056874 | MS.gene063538:CDS | 20.0% |
| !! | ATAAATTTAGATGTTAGACA+TGG | - | chr6.2:25056641-25056660 | MS.gene063538:CDS | 20.0% |
| !! | ATGTCGTAAAGATAATTATA+TGG | + | chr6.2:25056304-25056323 | None:intergenic | 20.0% |
| !! | CTTTATTAGAAAGATTGATA+TGG | + | chr6.2:25055760-25055779 | None:intergenic | 20.0% |
| !! | GATTCTGAATGAATTTATAT+TGG | - | chr6.2:25055689-25055708 | MS.gene063538:intron | 20.0% |
| !! | TAAATTTAGATGTTAGACAT+GGG | - | chr6.2:25056642-25056661 | MS.gene063538:CDS | 20.0% |
| !!! | AGAGTGAAAATTTTAGAAAA+AGG | - | chr6.2:25056528-25056547 | MS.gene063538:CDS | 20.0% |
| !!! | ATACGTGAAAATATTTTGTT+TGG | - | chr6.2:25056923-25056942 | MS.gene063538:CDS | 20.0% |
| ! | AACTTAACAGGAATATATCA+TGG | - | chr6.2:25057255-25057274 | MS.gene063538:CDS | 25.0% |
| ! | AAGTGGAAATCAATTAATTC+TGG | - | chr6.2:25057722-25057741 | MS.gene063538:CDS | 25.0% |
| ! | AATCTATATCTCAAAGACAA+TGG | - | chr6.2:25055787-25055806 | MS.gene063538:intron | 25.0% |
| ! | ATAAATTCATTCAGAATCAG+AGG | + | chr6.2:25055687-25055706 | None:intergenic | 25.0% |
| ! | ATATCTTTGATCATCCAATT+CGG | + | chr6.2:25056951-25056970 | None:intergenic | 25.0% |
| ! | ATCCATCGTTAGTAAAATAA+CGG | + | chr6.2:25057231-25057250 | None:intergenic | 25.0% |
| ! | CACAAAAATAAGGAAACAAA+GGG | + | chr6.2:25057838-25057857 | None:intergenic | 25.0% |
| ! | CTTTACAGTTAATGTCTAAT+GGG | - | chr6.2:25057514-25057533 | MS.gene063538:CDS | 25.0% |
| ! | GAATTATAGATCAATGTTCA+TGG | - | chr6.2:25056854-25056873 | MS.gene063538:CDS | 25.0% |
| ! | TCTTTACAGTTAATGTCTAA+TGG | - | chr6.2:25057513-25057532 | MS.gene063538:CDS | 25.0% |
| ! | TTAGATATTCTATCGTTTCT+AGG | - | chr6.2:25055246-25055265 | MS.gene063538:CDS | 25.0% |
| ! | TTATCAATGCAATACACAAT+TGG | + | chr6.2:25056007-25056026 | None:intergenic | 25.0% |
| ! | TTTACAGTTAATGTCTAATG+GGG | - | chr6.2:25057515-25057534 | MS.gene063538:CDS | 25.0% |
| ! | TTTCAATTGGATCTTGAATA+AGG | + | chr6.2:25056424-25056443 | None:intergenic | 25.0% |
| !! | AAGTAATGTTTTCACATTGT+TGG | - | chr6.2:25056388-25056407 | MS.gene063538:intron | 25.0% |
| !! | AATTAATTGATTTCCACTTG+GGG | + | chr6.2:25057721-25057740 | None:intergenic | 25.0% |
| !! | AGAATTAATTGATTTCCACT+TGG | + | chr6.2:25057723-25057742 | None:intergenic | 25.0% |
| !! | GAATGCTGATATATATCTTT+TGG | - | chr6.2:25057111-25057130 | MS.gene063538:CDS | 25.0% |
| !! | GAATTAATTGATTTCCACTT+GGG | + | chr6.2:25057722-25057741 | None:intergenic | 25.0% |
| AAAACATTACTTGCATTCAG+AGG | + | chr6.2:25056380-25056399 | None:intergenic | 30.0% | |
| AAATTTATGTTCCTCAGTGT+TGG | + | chr6.2:25056629-25056648 | None:intergenic | 30.0% | |
| ATGAATAACAACTTTCTGCT+CGG | + | chr6.2:25055518-25055537 | None:intergenic | 30.0% | |
| CAAACATGAAGGTTGTTTAT+TGG | - | chr6.2:25055734-25055753 | MS.gene063538:intron | 30.0% | |
| CATACTTGCAATATCTGAAT+CGG | - | chr6.2:25057781-25057800 | MS.gene063538:CDS | 30.0% | |
| CATGAAAGTTTCAAACATGA+AGG | - | chr6.2:25055723-25055742 | MS.gene063538:intron | 30.0% | |
| CCACAAAAATAAGGAAACAA+AGG | + | chr6.2:25057839-25057858 | None:intergenic | 30.0% | |
| GAGAGAGGAATTAATTTAAG+CGG | - | chr6.2:25057046-25057065 | MS.gene063538:CDS | 30.0% | |
| GATATCAAGAAACACTTCAT+AGG | - | chr6.2:25056966-25056985 | MS.gene063538:CDS | 30.0% | |
| GTTGAATCCATTGATGAAAA+CGG | - | chr6.2:25055440-25055459 | MS.gene063538:CDS | 30.0% | |
| TAACAGGAATATATCATGGA+AGG | - | chr6.2:25057259-25057278 | MS.gene063538:CDS | 30.0% | |
| TACCAAAATACAATCAAACG+CGG | + | chr6.2:25057335-25057354 | None:intergenic | 30.0% | |
| TCATTGAACTGACCATTTAA+AGG | + | chr6.2:25055351-25055370 | None:intergenic | 30.0% | |
| TCTGACAAACCACAAAAATA+AGG | + | chr6.2:25057848-25057867 | None:intergenic | 30.0% | |
| TGGTAAATTCATTCATCTTC+AGG | - | chr6.2:25057350-25057369 | MS.gene063538:CDS | 30.0% | |
| TTATCAAAATCTCTCTCTTG+TGG | + | chr6.2:25055620-25055639 | None:intergenic | 30.0% | |
| TTGAATCCATTGATGAAAAC+GGG | - | chr6.2:25055441-25055460 | MS.gene063538:CDS | 30.0% | |
| ! | ATAATTCTTTTCCGCACAAT+TGG | - | chr6.2:25056023-25056042 | MS.gene063538:CDS | 30.0% |
| ! | ATGTTTGCAGTAGTTCATTT+TGG | + | chr6.2:25057414-25057433 | None:intergenic | 30.0% |
| ! | GAATTTATATTGGTTGCTGA+AGG | - | chr6.2:25055699-25055718 | MS.gene063538:intron | 30.0% |
| !! | AAGAGAGAGATTTTGATAAC+AGG | - | chr6.2:25055621-25055640 | MS.gene063538:intron | 30.0% |
| !! | GGAGAAGTTTCTAAAACAAA+AGG | - | chr6.2:25056728-25056747 | MS.gene063538:CDS | 30.0% |
| !! | TATTTTGTTTGGATCCGAAT+TGG | - | chr6.2:25056934-25056953 | MS.gene063538:CDS | 30.0% |
| !!! | CCTTTGTTTCCTTATTTTTG+TGG | - | chr6.2:25057836-25057855 | MS.gene063538:CDS | 30.0% |
| !!! | TCGGATTGTTAATTTTTTCG+AGG | - | chr6.2:25056493-25056512 | MS.gene063538:CDS | 30.0% |
| ACCAAAATACAATCAAACGC+GGG | + | chr6.2:25057334-25057353 | None:intergenic | 35.0% | |
| AGAGGAATTAATTTAAGCGG+AGG | - | chr6.2:25057049-25057068 | MS.gene063538:CDS | 35.0% | |
| AGCCTTTATGCTCCTTTAAA+TGG | - | chr6.2:25055336-25055355 | MS.gene063538:CDS | 35.0% | |
| ATATCATGGAAGGACTGAAA+GGG | - | chr6.2:25057269-25057288 | MS.gene063538:CDS | 35.0% | |
| ATCAATGTTCATGGGAAGTT+TGG | - | chr6.2:25056863-25056882 | MS.gene063538:CDS | 35.0% | |
| ATCGTGGATGCTTATAGAAT+CGG | - | chr6.2:25055939-25055958 | MS.gene063538:intron | 35.0% | |
| CATGTTCTTCTTAATTGCAC+CGG | + | chr6.2:25056281-25056300 | None:intergenic | 35.0% | |
| CGATTCAGATATTGCAAGTA+TGG | + | chr6.2:25057783-25057802 | None:intergenic | 35.0% | |
| CTTTACGACATCATTGATGT+TGG | - | chr6.2:25056313-25056332 | MS.gene063538:intron | 35.0% | |
| GATATGTTTCTCAAACAGCA+TGG | - | chr6.2:25056885-25056904 | MS.gene063538:CDS | 35.0% | |
| GATATTGCAAAACTCATGGA+TGG | - | chr6.2:25057866-25057885 | MS.gene063538:CDS | 35.0% | |
| GGTCAAACACTCTTAACTTT+GGG | + | chr6.2:25055497-25055516 | None:intergenic | 35.0% | |
| GTCAGATATTGCAAAACTCA+TGG | - | chr6.2:25057862-25057881 | MS.gene063538:CDS | 35.0% | |
| TAAAGGCTTTCACCATTTAC+AGG | + | chr6.2:25055324-25055343 | None:intergenic | 35.0% | |
| TATATCATGGAAGGACTGAA+AGG | - | chr6.2:25057268-25057287 | MS.gene063538:CDS | 35.0% | |
| TCAATGCAATACACAATTGG+AGG | + | chr6.2:25056004-25056023 | None:intergenic | 35.0% | |
| TTATCGAAATCGAGTCTTTG+AGG | + | chr6.2:25056568-25056587 | None:intergenic | 35.0% | |
| ! | AAATTTTCACTCTGCAGTTC+TGG | + | chr6.2:25056521-25056540 | None:intergenic | 35.0% |
| ! | AATTTCAATGTGTCGATGTG+AGG | + | chr6.2:25057909-25057928 | None:intergenic | 35.0% |
| ! | AGGCAAAAGTTGCATTTTCT+CGG | - | chr6.2:25056474-25056493 | MS.gene063538:CDS | 35.0% |
| ! | AGTGTTGAAGCTATATGCAT+GGG | - | chr6.2:25056196-25056215 | MS.gene063538:CDS | 35.0% |
| ! | CGATGGATTTGAAACTTAAC+AGG | - | chr6.2:25057243-25057262 | MS.gene063538:CDS | 35.0% |
| ! | GACCATTTAAAGGAGCATAA+AGG | + | chr6.2:25055341-25055360 | None:intergenic | 35.0% |
| ! | TCTTTAGCAAGATCTCGTTT+TGG | - | chr6.2:25055415-25055434 | MS.gene063538:CDS | 35.0% |
| ! | TTTTGCAGTATGTGCATCAA+CGG | + | chr6.2:25057152-25057171 | None:intergenic | 35.0% |
| !! | AAGTGTTGAAGCTATATGCA+TGG | - | chr6.2:25056195-25056214 | MS.gene063538:CDS | 35.0% |
| !! | AGGATTCTTTGCTTTTCTCA+AGG | - | chr6.2:25055641-25055660 | MS.gene063538:intron | 35.0% |
| !! | TGCCGTTATTTTACTAACGA+TGG | - | chr6.2:25057226-25057245 | MS.gene063538:CDS | 35.0% |
| !! | TTGTGTTGTAAGTTTGCTAG+TGG | + | chr6.2:25056104-25056123 | None:intergenic | 35.0% |
| !!! | AAAATGTGCCGACTTTTCAT+GGG | - | chr6.2:25056586-25056605 | MS.gene063538:CDS | 35.0% |
| !!! | TAAAATGTGCCGACTTTTCA+TGG | - | chr6.2:25056585-25056604 | MS.gene063538:CDS | 35.0% |
| AAAACCGACGAATGTGATGA+TGG | + | chr6.2:25055579-25055598 | None:intergenic | 40.0% | |
| AACACTTCATAGGTCTTCAC+TGG | - | chr6.2:25056976-25056995 | MS.gene063538:CDS | 40.0% | |
| AAGAGGAAACACTCACAAGT+TGG | + | chr6.2:25057635-25057654 | None:intergenic | 40.0% | |
| ACGCTATTAGCAACGATTCT+TGG | - | chr6.2:25056707-25056726 | MS.gene063538:CDS | 40.0% | |
| AGATGTTAGACATGGGCAAA+AGG | - | chr6.2:25056649-25056668 | MS.gene063538:CDS | 40.0% | |
| AGTTATTGCAGCGATCATTC+AGG | - | chr6.2:25056454-25056473 | MS.gene063538:CDS | 40.0% | |
| ATCATTGATGTTGGCGTCAA+CGG | - | chr6.2:25056322-25056341 | MS.gene063538:intron | 40.0% | |
| ATGATCGCTGCAATAACTTC+TGG | + | chr6.2:25056452-25056471 | None:intergenic | 40.0% | |
| ATTTCAGTGAGGTCTCCATA+GGG | + | chr6.2:25057022-25057041 | None:intergenic | 40.0% | |
| CAAACAGCATGGATACAAAC+AGG | - | chr6.2:25056896-25056915 | MS.gene063538:CDS | 40.0% | |
| CAAGTTTCAAACCCAACTCA+TGG | - | chr6.2:25056121-25056140 | MS.gene063538:CDS | 40.0% | |
| CAATATCTGAATCGGACGAA+AGG | - | chr6.2:25057789-25057808 | MS.gene063538:CDS | 40.0% | |
| CCAAAATACAATCAAACGCG+GGG | + | chr6.2:25057333-25057352 | None:intergenic | 40.0% | |
| CGGTCAAACACTCTTAACTT+TGG | + | chr6.2:25055498-25055517 | None:intergenic | 40.0% | |
| CTGGAAGAAGAAAGAGAGAT+AGG | - | chr6.2:25057741-25057760 | MS.gene063538:CDS | 40.0% | |
| GAAAGAGAGATAGGAGATAC+AGG | - | chr6.2:25057750-25057769 | MS.gene063538:CDS | 40.0% | |
| GAATCGGAGAATTTCCATTC+TGG | - | chr6.2:25055955-25055974 | MS.gene063538:intron | 40.0% | |
| GTTACCTTCCCATGAAAAGT+CGG | + | chr6.2:25056597-25056616 | None:intergenic | 40.0% | |
| TATGGAGACCTCACTGAAAT+AGG | - | chr6.2:25057022-25057041 | MS.gene063538:CDS | 40.0% | |
| TATTTCAGTGAGGTCTCCAT+AGG | + | chr6.2:25057023-25057042 | None:intergenic | 40.0% | |
| TATTTCCGCAGTAGACTTGT+TGG | - | chr6.2:25055810-25055829 | MS.gene063538:CDS | 40.0% | |
| TGAACCATCATCACATTCGT+CGG | - | chr6.2:25055572-25055591 | MS.gene063538:CDS | 40.0% | |
| TGACAAGGTCTTGGAATTCT+TGG | + | chr6.2:25057584-25057603 | None:intergenic | 40.0% | |
| TGATCGCTGCAATAACTTCT+GGG | + | chr6.2:25056451-25056470 | None:intergenic | 40.0% | |
| TGTGAAGTCGATCCTGTAAA+TGG | - | chr6.2:25055309-25055328 | MS.gene063538:CDS | 40.0% | |
| ! | AAGGTACTCACACTATCTTC+TGG | - | chr6.2:25055660-25055679 | MS.gene063538:intron | 40.0% |
| ! | AATATCTAAAGCTGCCTCGA+GGG | + | chr6.2:25055235-25055254 | None:intergenic | 40.0% |
| ! | CGAACTCAAAGTGTTATCTC+CGG | - | chr6.2:25056259-25056278 | MS.gene063538:CDS | 40.0% |
| ! | GGGTCAAGAGAAAACACTTT+TGG | - | chr6.2:25055461-25055480 | MS.gene063538:CDS | 40.0% |
| ! | TCTTGACCCGTTTTCATCAA+TGG | + | chr6.2:25055450-25055469 | None:intergenic | 40.0% |
| ! | TTAGCAAGATCTCGTTTTGG+TGG | - | chr6.2:25055418-25055437 | MS.gene063538:CDS | 40.0% |
| !! | AAGAGTCCAGCTTTGGAAAA+AGG | + | chr6.2:25055399-25055418 | None:intergenic | 40.0% |
| !! | ACTTCTGGGAGGTTTTCAAT+TGG | + | chr6.2:25056437-25056456 | None:intergenic | 40.0% |
| !! | AGAGTCCAGCTTTGGAAAAA+GGG | + | chr6.2:25055398-25055417 | None:intergenic | 40.0% |
| !! | GAGATTAAAGGCTAGTTCTG+AGG | - | chr6.2:25056157-25056176 | MS.gene063538:CDS | 40.0% |
| !!! | CATCACATTCGTCGGTTTTA+TGG | - | chr6.2:25055580-25055599 | MS.gene063538:CDS | 40.0% |
| AAATACAATCAAACGCGGGG+AGG | + | chr6.2:25057330-25057349 | None:intergenic | 45.0% | |
| AACTTCCGGAAATAGTACGC+TGG | - | chr6.2:25057671-25057690 | MS.gene063538:CDS | 45.0% | |
| AAGGAGTTTATAGCCCCAAG+TGG | - | chr6.2:25057705-25057724 | MS.gene063538:CDS | 45.0% | |
| AATGGGGTAATCCTACAAGC+TGG | - | chr6.2:25057531-25057550 | MS.gene063538:CDS | 45.0% | |
| ACGCATCAAATCCAACACTG+AGG | - | chr6.2:25056615-25056634 | MS.gene063538:CDS | 45.0% | |
| ACTAGCAACACTCGCATCAT+TGG | - | chr6.2:25056046-25056065 | MS.gene063538:CDS | 45.0% | |
| AGACCTTGTCAATGCTCACA+AGG | - | chr6.2:25057593-25057612 | MS.gene063538:CDS | 45.0% | |
| CAAGTCTGGTGAAACCAGAA+TGG | + | chr6.2:25055972-25055991 | None:intergenic | 45.0% | |
| CGCGCAAGATGAGAGATTAA+AGG | - | chr6.2:25056145-25056164 | MS.gene063538:CDS | 45.0% | |
| CTCCATAGGGAAACAACTCA+AGG | + | chr6.2:25057009-25057028 | None:intergenic | 45.0% | |
| CTTGCTAAAGAGTCCAGCTT+TGG | + | chr6.2:25055406-25055425 | None:intergenic | 45.0% | |
| GCTAGATTGAATCACTCTGG+TGG | - | chr6.2:25055897-25055916 | MS.gene063538:intron | 45.0% | |
| GGTGATATGAACCAGCTTGT+AGG | + | chr6.2:25057545-25057564 | None:intergenic | 45.0% | |
| TCACTCCAACAAGTCTACTG+CGG | + | chr6.2:25055818-25055837 | None:intergenic | 45.0% | |
| TCATAGGTCTTCACTGGCAA+AGG | - | chr6.2:25056982-25057001 | MS.gene063538:CDS | 45.0% | |
| TCCCACAGACATTCAACTTC+CGG | - | chr6.2:25057657-25057676 | MS.gene063538:CDS | 45.0% | |
| TCCGGAAGTTGAATGTCTGT+GGG | + | chr6.2:25057661-25057680 | None:intergenic | 45.0% | |
| TCGGCTAGATTGAATCACTC+TGG | - | chr6.2:25055894-25055913 | MS.gene063538:intron | 45.0% | |
| TGAATGTCTGTGGGAAGAAG+AGG | + | chr6.2:25057652-25057671 | None:intergenic | 45.0% | |
| TGAGCCAACTTCTCCACAAA+TGG | + | chr6.2:25056678-25056697 | None:intergenic | 45.0% | |
| TGTGCATCAACGGCACTAAA+TGG | + | chr6.2:25057142-25057161 | None:intergenic | 45.0% | |
| TGTTAGACATGGGCAAAAGG+TGG | - | chr6.2:25056652-25056671 | MS.gene063538:CDS | 45.0% | |
| TTCCGGAAGTTGAATGTCTG+TGG | + | chr6.2:25057662-25057681 | None:intergenic | 45.0% | |
| ! | ATTTGTGGAGAAGTTGGCTC+AGG | - | chr6.2:25056677-25056696 | MS.gene063538:CDS | 45.0% |
| ! | CCCCGCGTTTGATTGTATTT+TGG | - | chr6.2:25057330-25057349 | MS.gene063538:CDS | 45.0% |
| ! | GAATATCTAAAGCTGCCTCG+AGG | + | chr6.2:25055236-25055255 | None:intergenic | 45.0% |
| ! | GACCTTGAGTTGTTTCCCTA+TGG | - | chr6.2:25057004-25057023 | MS.gene063538:CDS | 45.0% |
| ! | GTAACCCCTTTTTCCAAAGC+TGG | - | chr6.2:25055390-25055409 | MS.gene063538:CDS | 45.0% |
| ! | GTGTTGCTAGTCCAATTGTG+CGG | + | chr6.2:25056037-25056056 | None:intergenic | 45.0% |
| !! | CATTCTGGTTTCACCAGACT+TGG | - | chr6.2:25055970-25055989 | MS.gene063538:intron | 45.0% |
| !! | GAGTCCAGCTTTGGAAAAAG+GGG | + | chr6.2:25055397-25055416 | None:intergenic | 45.0% |
| !! | TCTCCTTGTGAGCATTGACA+AGG | + | chr6.2:25057599-25057618 | None:intergenic | 45.0% |
| !! | TGTGAGCATTGACAAGGTCT+TGG | + | chr6.2:25057593-25057612 | None:intergenic | 45.0% |
| AATGCTCACAAGGAGACTGC+TGG | - | chr6.2:25057603-25057622 | MS.gene063538:CDS | 50.0% | |
| AGCAACACTCGCATCATTGG+CGG | - | chr6.2:25056049-25056068 | MS.gene063538:CDS | 50.0% | |
| ATCTTGCGCGACCATGAGTT+GGG | + | chr6.2:25056135-25056154 | None:intergenic | 50.0% | |
| CTCACTGAAATAGGCGAGAG+AGG | - | chr6.2:25057031-25057050 | MS.gene063538:CDS | 50.0% | |
| CTCTCTCGCCTATTTCAGTG+AGG | + | chr6.2:25057033-25057052 | None:intergenic | 50.0% | |
| GCGATCCAGCGTACTATTTC+CGG | + | chr6.2:25057679-25057698 | None:intergenic | 50.0% | |
| GTGGCCATTTGTGGAGAAGT+TGG | - | chr6.2:25056671-25056690 | MS.gene063538:CDS | 50.0% | |
| TCGCTGCAATAACTTCTGGG+AGG | + | chr6.2:25056448-25056467 | None:intergenic | 50.0% | |
| ! | CTTGGCTTGAGCTCAATAGC+TGG | + | chr6.2:25057566-25057585 | None:intergenic | 50.0% |
| !!! | TGTGCCGACTTTTCATGGGA+AGG | - | chr6.2:25056590-25056609 | MS.gene063538:CDS | 50.0% |
| CATCTTGCGCGACCATGAGT+TGG | + | chr6.2:25056136-25056155 | None:intergenic | 55.0% | |
| GGGCAAAAGGTGGCCATTTG+TGG | - | chr6.2:25056662-25056681 | MS.gene063538:CDS | 55.0% | |
| !! | GGAGGCTTGTTGTCCAAGTC+TGG | + | chr6.2:25055986-25056005 | None:intergenic | 55.0% |
| TACGCTGGATCGCGCGTTGA+AGG | - | chr6.2:25057686-25057705 | MS.gene063538:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 25055224 | 25057935 | 25055224 | ID=MS.gene063538 |
| chr6.2 | mRNA | 25055224 | 25057935 | 25055224 | ID=MS.gene063538.t1;Parent=MS.gene063538 |
| chr6.2 | exon | 25056405 | 25057935 | 25056405 | ID=MS.gene063538.t1.exon1;Parent=MS.gene063538.t1 |
| chr6.2 | CDS | 25056405 | 25057935 | 25056405 | ID=cds.MS.gene063538.t1;Parent=MS.gene063538.t1 |
| chr6.2 | exon | 25055976 | 25056296 | 25055976 | ID=MS.gene063538.t1.exon2;Parent=MS.gene063538.t1 |
| chr6.2 | CDS | 25055976 | 25056296 | 25055976 | ID=cds.MS.gene063538.t1;Parent=MS.gene063538.t1 |
| chr6.2 | exon | 25055808 | 25055894 | 25055808 | ID=MS.gene063538.t1.exon3;Parent=MS.gene063538.t1 |
| chr6.2 | CDS | 25055808 | 25055894 | 25055808 | ID=cds.MS.gene063538.t1;Parent=MS.gene063538.t1 |
| chr6.2 | exon | 25055224 | 25055637 | 25055224 | ID=MS.gene063538.t1.exon4;Parent=MS.gene063538.t1 |
| chr6.2 | CDS | 25055224 | 25055637 | 25055224 | ID=cds.MS.gene063538.t1;Parent=MS.gene063538.t1 |
| Gene Sequence |
| Protein sequence |
