Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064058.t1 | XP_003620926.1 | 93.2 | 295 | 14 | 2 | 1 | 295 | 1 | 289 | 9.40E-144 | 519.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064058.t1 | Q9LVS0 | 56.4 | 172 | 54 | 5 | 1 | 162 | 1 | 161 | 2.9e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064058.t1 | G7KJT9 | 93.2 | 295 | 14 | 2 | 1 | 295 | 1 | 289 | 6.7e-144 | 519.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064058.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene064058 | -0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene064058 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene056087 | MS.gene064058 | 0.812246 | 4.67E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene064058 | 0.826727 | 2.31E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene064058 | -0.803896 | 2.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064058.t1 | MTR_6g092540 | 94.576 | 295 | 10 | 2 | 1 | 295 | 1 | 289 | 0.0 | 561 |
| MS.gene064058.t1 | MTR_8g101650 | 50.318 | 314 | 103 | 13 | 1 | 295 | 1 | 280 | 2.03e-72 | 224 |
| MS.gene064058.t1 | MTR_2g100930 | 52.717 | 184 | 55 | 5 | 1 | 162 | 1 | 174 | 1.23e-48 | 165 |
| MS.gene064058.t1 | MTR_4g100630 | 48.108 | 185 | 74 | 4 | 1 | 175 | 1 | 173 | 3.43e-47 | 161 |
| MS.gene064058.t1 | MTR_5g037080 | 48.555 | 173 | 70 | 4 | 1 | 162 | 3 | 167 | 2.64e-41 | 145 |
| MS.gene064058.t1 | MTR_3g104370 | 44.565 | 184 | 82 | 5 | 1 | 177 | 3 | 173 | 2.71e-36 | 130 |
| MS.gene064058.t1 | MTR_4g111975 | 73.239 | 71 | 19 | 0 | 91 | 161 | 132 | 202 | 1.11e-33 | 125 |
| MS.gene064058.t1 | MTR_7g067080 | 78.873 | 71 | 15 | 0 | 91 | 161 | 134 | 204 | 4.07e-33 | 124 |
| MS.gene064058.t1 | MTR_4g107230 | 48.780 | 164 | 69 | 5 | 32 | 187 | 15 | 171 | 2.37e-31 | 118 |
| MS.gene064058.t1 | MTR_3g462790 | 73.611 | 72 | 19 | 0 | 91 | 162 | 141 | 212 | 2.68e-31 | 119 |
| MS.gene064058.t1 | MTR_5g069710 | 73.611 | 72 | 19 | 0 | 91 | 162 | 126 | 197 | 3.89e-31 | 118 |
| MS.gene064058.t1 | MTR_1g111830 | 71.429 | 70 | 20 | 0 | 92 | 161 | 119 | 188 | 3.27e-30 | 114 |
| MS.gene064058.t1 | MTR_5g081860 | 69.863 | 73 | 20 | 1 | 91 | 161 | 119 | 191 | 6.67e-29 | 111 |
| MS.gene064058.t1 | MTR_0036s0260 | 70.769 | 65 | 19 | 0 | 97 | 161 | 28 | 92 | 2.39e-27 | 105 |
| MS.gene064058.t1 | MTR_2g090305 | 69.231 | 65 | 20 | 0 | 97 | 161 | 28 | 92 | 1.39e-25 | 100 |
| MS.gene064058.t1 | MTR_8g063600 | 68.493 | 73 | 21 | 1 | 91 | 161 | 100 | 172 | 2.35e-25 | 102 |
| MS.gene064058.t1 | MTR_1g033620 | 56.790 | 81 | 28 | 2 | 112 | 185 | 20 | 100 | 6.28e-20 | 87.0 |
| MS.gene064058.t1 | MTR_4g015130 | 67.857 | 56 | 18 | 0 | 106 | 161 | 2 | 57 | 1.77e-19 | 81.3 |
| MS.gene064058.t1 | MTR_5g027570 | 52.857 | 70 | 31 | 1 | 93 | 160 | 88 | 157 | 4.19e-19 | 84.3 |
| MS.gene064058.t1 | MTR_8g063870 | 61.538 | 65 | 23 | 1 | 99 | 161 | 94 | 158 | 2.03e-18 | 83.6 |
| MS.gene064058.t1 | MTR_5g088010 | 50.704 | 71 | 32 | 1 | 93 | 160 | 56 | 126 | 4.69e-18 | 82.0 |
| MS.gene064058.t1 | MTR_1g048660 | 48.315 | 89 | 36 | 3 | 98 | 185 | 13 | 92 | 2.53e-17 | 75.9 |
| MS.gene064058.t1 | MTR_5g088060 | 55.385 | 65 | 26 | 1 | 99 | 160 | 274 | 338 | 7.49e-17 | 80.9 |
| MS.gene064058.t1 | MTR_5g488160 | 55.385 | 65 | 26 | 1 | 99 | 160 | 274 | 338 | 7.49e-17 | 80.9 |
| MS.gene064058.t1 | MTR_5g027550 | 58.929 | 56 | 23 | 0 | 93 | 148 | 73 | 128 | 1.33e-16 | 77.4 |
| MS.gene064058.t1 | MTR_1g083180 | 50.633 | 79 | 33 | 3 | 99 | 174 | 63 | 138 | 5.02e-15 | 72.4 |
| MS.gene064058.t1 | MTR_5g075760 | 56.250 | 64 | 24 | 3 | 99 | 159 | 107 | 169 | 2.51e-12 | 65.5 |
| MS.gene064058.t1 | MTR_5g075790 | 54.688 | 64 | 25 | 3 | 99 | 159 | 115 | 177 | 9.39e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064058.t1 | AT5G56840 | 55.838 | 197 | 54 | 6 | 1 | 185 | 1 | 176 | 5.28e-61 | 194 |
| MS.gene064058.t1 | AT5G47390 | 52.907 | 172 | 60 | 4 | 1 | 162 | 1 | 161 | 2.48e-49 | 167 |
| MS.gene064058.t1 | AT5G61620 | 49.123 | 171 | 71 | 6 | 1 | 161 | 8 | 172 | 8.50e-46 | 157 |
| MS.gene064058.t1 | AT3G16350 | 40.323 | 310 | 117 | 11 | 1 | 257 | 1 | 295 | 3.57e-44 | 155 |
| MS.gene064058.t1 | AT1G70000 | 50.857 | 175 | 61 | 7 | 1 | 162 | 1 | 163 | 1.64e-42 | 147 |
| MS.gene064058.t1 | AT1G70000 | 50.857 | 175 | 61 | 7 | 1 | 162 | 1 | 163 | 1.64e-42 | 147 |
| MS.gene064058.t1 | AT1G49010 | 66.667 | 81 | 27 | 0 | 91 | 171 | 128 | 208 | 1.95e-33 | 124 |
| MS.gene064058.t1 | AT5G08520 | 67.949 | 78 | 25 | 0 | 91 | 168 | 112 | 189 | 6.42e-33 | 123 |
| MS.gene064058.t1 | AT2G38090 | 71.250 | 80 | 21 | 1 | 85 | 162 | 127 | 206 | 1.58e-32 | 122 |
| MS.gene064058.t1 | AT5G58900 | 60.417 | 96 | 38 | 0 | 92 | 187 | 136 | 231 | 7.21e-31 | 117 |
| MS.gene064058.t1 | AT5G01200 | 70.423 | 71 | 21 | 0 | 91 | 161 | 140 | 210 | 1.07e-29 | 114 |
| MS.gene064058.t1 | AT3G11280 | 69.014 | 71 | 22 | 0 | 91 | 161 | 121 | 191 | 1.70e-28 | 110 |
| MS.gene064058.t1 | AT3G11280 | 69.014 | 71 | 22 | 0 | 91 | 161 | 121 | 191 | 1.70e-28 | 110 |
| MS.gene064058.t1 | AT5G04760 | 65.714 | 70 | 24 | 0 | 92 | 161 | 94 | 163 | 3.26e-28 | 108 |
| MS.gene064058.t1 | AT5G05790 | 67.606 | 71 | 23 | 0 | 91 | 161 | 125 | 195 | 1.32e-27 | 108 |
| MS.gene064058.t1 | AT5G05790 | 67.606 | 71 | 23 | 0 | 91 | 161 | 125 | 195 | 1.32e-27 | 108 |
| MS.gene064058.t1 | AT1G19000 | 40.299 | 201 | 90 | 6 | 93 | 291 | 98 | 270 | 6.71e-27 | 106 |
| MS.gene064058.t1 | AT1G19000 | 40.299 | 201 | 90 | 6 | 93 | 291 | 98 | 270 | 6.71e-27 | 106 |
| MS.gene064058.t1 | AT1G74840 | 46.259 | 147 | 68 | 4 | 23 | 161 | 17 | 160 | 1.12e-26 | 105 |
| MS.gene064058.t1 | AT1G74840 | 46.259 | 147 | 68 | 4 | 23 | 161 | 17 | 160 | 2.60e-26 | 104 |
| MS.gene064058.t1 | AT5G23650 | 60.563 | 71 | 28 | 0 | 91 | 161 | 114 | 184 | 2.78e-23 | 97.8 |
| MS.gene064058.t1 | AT3G10580 | 56.627 | 83 | 34 | 1 | 93 | 175 | 91 | 171 | 7.07e-23 | 95.5 |
| MS.gene064058.t1 | AT3G10580 | 56.627 | 83 | 34 | 1 | 93 | 175 | 91 | 171 | 1.15e-22 | 95.5 |
| MS.gene064058.t1 | AT4G09450 | 57.971 | 69 | 29 | 0 | 93 | 161 | 87 | 155 | 8.16e-20 | 85.9 |
| MS.gene064058.t1 | AT3G10590 | 51.316 | 76 | 34 | 2 | 89 | 162 | 101 | 175 | 7.56e-16 | 75.1 |
Find 49 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTACATTTGAAGAATT+TGG | 0.184804 | 6.1:-79572835 | None:intergenic |
| GCTAATTAAGTCACACTAAT+TGG | 0.200852 | 6.1:-79572943 | None:intergenic |
| AATTACAAGTCCTTGAATTA+TGG | 0.245021 | 6.1:-79570983 | None:intergenic |
| TCCCCAAGTTCATTTCTTAT+TGG | 0.248835 | 6.1:+79572919 | MS.gene064058:CDS |
| CCCCAAGTTCATTTCTTATT+GGG | 0.272509 | 6.1:+79572920 | MS.gene064058:CDS |
| TTGTTCCATGTTATTTGAAT+TGG | 0.302002 | 6.1:-79572887 | None:intergenic |
| CATATCATAATCATCTGATT+TGG | 0.325159 | 6.1:-79572701 | None:intergenic |
| ATATTTAAAGACTTTGTTAG+AGG | 0.361817 | 6.1:-79572799 | None:intergenic |
| AGAAGCTTGGAAAGGGAGAT+TGG | 0.367189 | 6.1:+79571563 | MS.gene064058:CDS |
| CTATGCTCTTCTTCTGTCCA+TGG | 0.368105 | 6.1:-79571520 | None:intergenic |
| ACGTCTCTTCTTCTTGTTCA+AGG | 0.393113 | 6.1:-79571671 | None:intergenic |
| AGGACTTGTAATTCATTAAG+AGG | 0.396462 | 6.1:+79570993 | MS.gene064058:CDS |
| GAGCATAGAAAATTCCTTGT+TGG | 0.413219 | 6.1:+79571535 | MS.gene064058:CDS |
| CTTGTTGGACTTGAGAAGCT+TGG | 0.417301 | 6.1:+79571550 | MS.gene064058:CDS |
| GTTAGAGGATGTAGCCAATC+TGG | 0.418818 | 6.1:-79572784 | None:intergenic |
| GCTTGGAAAGGGAGATTGGA+GGG | 0.428206 | 6.1:+79571567 | MS.gene064058:CDS |
| ATTGATGATAGAGCCTCTAT+TGG | 0.438397 | 6.1:+79571164 | MS.gene064058:CDS |
| GAAGAAGAAAAGGAAGAAGT+AGG | 0.461242 | 6.1:-79571131 | None:intergenic |
| TCTATTGGTTATCTTTCAGA+TGG | 0.477044 | 6.1:+79571179 | MS.gene064058:CDS |
| GGATAATCTTGAAGAAGAAA+AGG | 0.479396 | 6.1:-79571141 | None:intergenic |
| GATCTTGAGCTAACTCTGGC+AGG | 0.479985 | 6.1:+79572862 | MS.gene064058:CDS |
| TTTCTTGTGTACGAACTATG+AGG | 0.489619 | 6.1:-79571202 | None:intergenic |
| GCAGAAAGTGCTCACATTGT+GGG | 0.491045 | 6.1:+79570952 | MS.gene064058:CDS |
| AATAGAGGCTCTATCATCAA+TGG | 0.491413 | 6.1:-79571162 | None:intergenic |
| GGACTTGAGAAGCTTGGAAA+GGG | 0.498462 | 6.1:+79571556 | MS.gene064058:CDS |
| AGCTTGGAAAGGGAGATTGG+AGG | 0.502184 | 6.1:+79571566 | MS.gene064058:CDS |
| GGCCCAATAAGAAATGAACT+TGG | 0.508375 | 6.1:-79572922 | None:intergenic |
| ATCTGAAAGATAACCAATAG+AGG | 0.510798 | 6.1:-79571177 | None:intergenic |
| TTTATTAATTAGGAGTTCCA+TGG | 0.511389 | 6.1:+79571503 | MS.gene064058:intron |
| GCCAGAGTTAGCTCAAGATC+AGG | 0.513405 | 6.1:-79572859 | None:intergenic |
| GGAACATAGGCCATAATTCA+AGG | 0.517005 | 6.1:+79570973 | MS.gene064058:CDS |
| GCCCAATAAGAAATGAACTT+GGG | 0.527445 | 6.1:-79572921 | None:intergenic |
| GCATGGCTTGCAACTTGTGT+TGG | 0.527834 | 6.1:-79571622 | None:intergenic |
| AAAGTCTTTAAATATGACAT+TGG | 0.528696 | 6.1:+79572807 | MS.gene064058:CDS |
| TCATAGTTCGTACACAAGAA+AGG | 0.532269 | 6.1:+79571204 | MS.gene064058:CDS |
| GTAGGAGAAGAAGATGAAGT+AGG | 0.532464 | 6.1:-79571113 | None:intergenic |
| GAATATGTTTAGGTTGGTAG+TGG | 0.550713 | 6.1:+79572544 | MS.gene064058:intron |
| TGCTCACATTGTGGGAACAT+AGG | 0.554058 | 6.1:+79570960 | MS.gene064058:CDS |
| GGCAGAAAGTGCTCACATTG+TGG | 0.555510 | 6.1:+79570951 | MS.gene064058:CDS |
| ATCTTGAGCTAACTCTGGCA+GGG | 0.569532 | 6.1:+79572863 | MS.gene064058:CDS |
| ACCTGATCTTGAGCTAACTC+TGG | 0.582338 | 6.1:+79572858 | MS.gene064058:CDS |
| TGGACTTGAGAAGCTTGGAA+AGG | 0.582509 | 6.1:+79571555 | MS.gene064058:CDS |
| CCCAATAAGAAATGAACTTG+GGG | 0.590590 | 6.1:-79572920 | None:intergenic |
| CTTGGAAAGGGAGATTGGAG+GGG | 0.594996 | 6.1:+79571568 | MS.gene064058:CDS |
| CAAGCTTCTCAAGTCCAACA+AGG | 0.608243 | 6.1:-79571549 | None:intergenic |
| TGATGATCATGAAGTTGAGA+AGG | 0.617743 | 6.1:+79572636 | MS.gene064058:CDS |
| GATCATGAAGTTGAGAAGGA+TGG | 0.622469 | 6.1:+79572640 | MS.gene064058:CDS |
| ACGTTCAAGTCTCTTTGACA+TGG | 0.636224 | 6.1:+79571690 | MS.gene064058:CDS |
| AGGGTCCAATTCAAATAACA+TGG | 0.651228 | 6.1:+79572882 | MS.gene064058:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACTTATACAAAA+TGG | - | chr6.1:79571930-79571949 | None:intergenic | 10.0% |
| !! | AAAAAAAACTTATACAAAAT+GGG | - | chr6.1:79571929-79571948 | None:intergenic | 10.0% |
| !!! | ATTTTGTTGTTTTATTAATT+AGG | + | chr6.1:79571493-79571512 | MS.gene064058:intron | 10.0% |
| !! | ATTATAAAAAGAAGATTCTT+TGG | - | chr6.1:79572100-79572119 | None:intergenic | 15.0% |
| !! | TAACCTATCAAAAAATTATT+AGG | + | chr6.1:79572159-79572178 | MS.gene064058:intron | 15.0% |
| !!! | ATGATGTTATTTTAGAATTT+GGG | - | chr6.1:79572140-79572159 | None:intergenic | 15.0% |
| !!! | CTTTTTATAATTGTTGAATT+AGG | + | chr6.1:79572109-79572128 | MS.gene064058:intron | 15.0% |
| !!! | TATGATGTTATTTTAGAATT+TGG | - | chr6.1:79572141-79572160 | None:intergenic | 15.0% |
| !! | AAAGTCTTTAAATATGACAT+TGG | + | chr6.1:79572807-79572826 | MS.gene064058:CDS | 20.0% |
| !! | AAATAAAAAACGTCAAATGT+CGG | + | chr6.1:79572365-79572384 | MS.gene064058:intron | 20.0% |
| !! | ATATTTAAAGACTTTGTTAG+AGG | - | chr6.1:79572802-79572821 | None:intergenic | 20.0% |
| !! | CTATGATGTATTTATTATGA+AGG | + | chr6.1:79571355-79571374 | MS.gene064058:intron | 20.0% |
| !! | TAAAATGCAAATATCCAAAT+TGG | - | chr6.1:79572494-79572513 | None:intergenic | 20.0% |
| !! | TATGCATTTCATTGAATTTA+AGG | - | chr6.1:79571809-79571828 | None:intergenic | 20.0% |
| !! | TGATATTGTTGAATATGTTT+AGG | + | chr6.1:79572534-79572553 | MS.gene064058:intron | 20.0% |
| !! | TGTTTGTATATCAAAAATCA+AGG | - | chr6.1:79572330-79572349 | None:intergenic | 20.0% |
| !! | TTTGAATTTACTCATTTAGA+CGG | - | chr6.1:79572049-79572068 | None:intergenic | 20.0% |
| !!! | ATCAAATTTTATCAAGACAT+CGG | + | chr6.1:79571274-79571293 | MS.gene064058:intron | 20.0% |
| !!! | TGACCTAATAATTTTTTGAT+AGG | - | chr6.1:79572165-79572184 | None:intergenic | 20.0% |
| ! | AAAAACTTATACAAAATGGG+CGG | - | chr6.1:79571926-79571945 | None:intergenic | 25.0% |
| ! | AATTACAAGTCCTTGAATTA+TGG | - | chr6.1:79570986-79571005 | None:intergenic | 25.0% |
| ! | ATGTTCAATCTTAGACATAA+AGG | + | chr6.1:79572270-79572289 | MS.gene064058:intron | 25.0% |
| ! | ATTGTTGAATATGTTTAGGT+TGG | + | chr6.1:79572538-79572557 | MS.gene064058:intron | 25.0% |
| ! | CATATCATAATCATCTGATT+TGG | - | chr6.1:79572704-79572723 | None:intergenic | 25.0% |
| ! | CTATAAAAGAGTTCATATGT+GGG | + | chr6.1:79571879-79571898 | MS.gene064058:intron | 25.0% |
| ! | TCTATAAAAGAGTTCATATG+TGG | + | chr6.1:79571878-79571897 | MS.gene064058:intron | 25.0% |
| ! | TTTATTAATTAGGAGTTCCA+TGG | + | chr6.1:79571503-79571522 | MS.gene064058:intron | 25.0% |
| !! | GAATAAAATACTTTTGAGCA+TGG | - | chr6.1:79571642-79571661 | None:intergenic | 25.0% |
| !! | TTGTTCCATGTTATTTGAAT+TGG | - | chr6.1:79572890-79572909 | None:intergenic | 25.0% |
| AAAACTTATACAAAATGGGC+GGG | - | chr6.1:79571925-79571944 | None:intergenic | 30.0% | |
| AGGACTTGTAATTCATTAAG+AGG | + | chr6.1:79570993-79571012 | MS.gene064058:CDS | 30.0% | |
| ATCTGAAAGATAACCAATAG+AGG | - | chr6.1:79571180-79571199 | None:intergenic | 30.0% | |
| GCATCTACATTTGAAGAATT+TGG | - | chr6.1:79572838-79572857 | None:intergenic | 30.0% | |
| GGATAATCTTGAAGAAGAAA+AGG | - | chr6.1:79571144-79571163 | None:intergenic | 30.0% | |
| TTCTTCTCAAAAGACCAATT+TGG | + | chr6.1:79572477-79572496 | MS.gene064058:intron | 30.0% | |
| ! | TCATTGAATTTAAGGTCATG+AGG | - | chr6.1:79571801-79571820 | None:intergenic | 30.0% |
| ! | TCTATTGGTTATCTTTCAGA+TGG | + | chr6.1:79571179-79571198 | MS.gene064058:CDS | 30.0% |
| ! | TTTGTTGGAGTTAGACTTTT+TGG | + | chr6.1:79571026-79571045 | MS.gene064058:CDS | 30.0% |
| !! | CATGAAAAAGAGTTTTAGCA+TGG | + | chr6.1:79571082-79571101 | MS.gene064058:CDS | 30.0% |
| !! | CATGCTAAAACTCTTTTTCA+TGG | - | chr6.1:79571084-79571103 | None:intergenic | 30.0% |
| !! | GTGCTTTTTAAGAAATCAGA+GGG | - | chr6.1:79571962-79571981 | None:intergenic | 30.0% |
| !! | TGAGTGGTTTTTAAGAATCA+TGG | + | chr6.1:79572071-79572090 | MS.gene064058:intron | 30.0% |
| !! | TGTGCTTTTTAAGAAATCAG+AGG | - | chr6.1:79571963-79571982 | None:intergenic | 30.0% |
| !!! | TCATCCATTTTGAAGTATCT+AGG | + | chr6.1:79571323-79571342 | MS.gene064058:intron | 30.0% |
| !!! | TTGCTTTTTGAGCTGTTATT+TGG | - | chr6.1:79572592-79572611 | None:intergenic | 30.0% |
| AACAAAAAGATGTGCCAGAT+TGG | + | chr6.1:79572770-79572789 | MS.gene064058:CDS | 35.0% | |
| AATAGAGGCTCTATCATCAA+TGG | - | chr6.1:79571165-79571184 | None:intergenic | 35.0% | |
| ACGCGTTTGGATGTATAATT+CGG | + | chr6.1:79572007-79572026 | MS.gene064058:intron | 35.0% | |
| AGGGTCCAATTCAAATAACA+TGG | + | chr6.1:79572882-79572901 | MS.gene064058:CDS | 35.0% | |
| CAGTTAAAGTAGTCTCGATA+AGG | - | chr6.1:79572401-79572420 | None:intergenic | 35.0% | |
| CCCAATAAGAAATGAACTTG+GGG | - | chr6.1:79572923-79572942 | None:intergenic | 35.0% | |
| CCCCAAGTTCATTTCTTATT+GGG | + | chr6.1:79572920-79572939 | MS.gene064058:CDS | 35.0% | |
| CGTACACAAGAAAGGAAAAA+AGG | + | chr6.1:79571212-79571231 | MS.gene064058:CDS | 35.0% | |
| GAAGAAGAAAAGGAAGAAGT+AGG | - | chr6.1:79571134-79571153 | None:intergenic | 35.0% | |
| GAAGCCTAGATACTTCAAAA+TGG | - | chr6.1:79571330-79571349 | None:intergenic | 35.0% | |
| GAGCATAGAAAATTCCTTGT+TGG | + | chr6.1:79571535-79571554 | MS.gene064058:CDS | 35.0% | |
| GCCCAATAAGAAATGAACTT+GGG | - | chr6.1:79572924-79572943 | None:intergenic | 35.0% | |
| TCATAGTTCGTACACAAGAA+AGG | + | chr6.1:79571204-79571223 | MS.gene064058:CDS | 35.0% | |
| TCCCCAAGTTCATTTCTTAT+TGG | + | chr6.1:79572919-79572938 | MS.gene064058:CDS | 35.0% | |
| TGAGTAAATTCAAACGTGAG+TGG | + | chr6.1:79572055-79572074 | MS.gene064058:intron | 35.0% | |
| TGATGATCATGAAGTTGAGA+AGG | + | chr6.1:79572636-79572655 | MS.gene064058:CDS | 35.0% | |
| TTTCTTGTGTACGAACTATG+AGG | - | chr6.1:79571205-79571224 | None:intergenic | 35.0% | |
| ! | ATTGATGATAGAGCCTCTAT+TGG | + | chr6.1:79571164-79571183 | MS.gene064058:CDS | 35.0% |
| !! | GAATATGTTTAGGTTGGTAG+TGG | + | chr6.1:79572544-79572563 | MS.gene064058:intron | 35.0% |
| !! | GTGGTTTTTAAGAATCATGG+TGG | + | chr6.1:79572074-79572093 | MS.gene064058:intron | 35.0% |
| !!! | AGAGGAAGTAGTAGTTTTGT+TGG | + | chr6.1:79571011-79571030 | MS.gene064058:CDS | 35.0% |
| AACAGCTCAAAAAGCAAGTC+AGG | + | chr6.1:79572595-79572614 | MS.gene064058:CDS | 40.0% | |
| ACGTCTCTTCTTCTTGTTCA+AGG | - | chr6.1:79571674-79571693 | None:intergenic | 40.0% | |
| ACGTTCAAGTCTCTTTGACA+TGG | + | chr6.1:79571690-79571709 | MS.gene064058:CDS | 40.0% | |
| GATCATGAAGTTGAGAAGGA+TGG | + | chr6.1:79572640-79572659 | MS.gene064058:CDS | 40.0% | |
| GGAACATAGGCCATAATTCA+AGG | + | chr6.1:79570973-79570992 | MS.gene064058:CDS | 40.0% | |
| GGCCCAATAAGAAATGAACT+TGG | - | chr6.1:79572925-79572944 | None:intergenic | 40.0% | |
| GTAGGAGAAGAAGATGAAGT+AGG | - | chr6.1:79571116-79571135 | None:intergenic | 40.0% | |
| ! | AAAAGCACACCACTTCGAAT+TGG | + | chr6.1:79571974-79571993 | MS.gene064058:intron | 40.0% |
| ! | TTTTATCAAGACATCGGTGC+AGG | + | chr6.1:79571280-79571299 | MS.gene064058:intron | 40.0% |
| ACCTGATCTTGAGCTAACTC+TGG | + | chr6.1:79572858-79572877 | MS.gene064058:CDS | 45.0% | |
| AGAAGCTTGGAAAGGGAGAT+TGG | + | chr6.1:79571563-79571582 | MS.gene064058:CDS | 45.0% | |
| ATCTTGAGCTAACTCTGGCA+GGG | + | chr6.1:79572863-79572882 | MS.gene064058:CDS | 45.0% | |
| CAAGCTTCTCAAGTCCAACA+AGG | - | chr6.1:79571552-79571571 | None:intergenic | 45.0% | |
| CACACCACTTCGAATTGGAA+AGG | + | chr6.1:79571979-79571998 | MS.gene064058:intron | 45.0% | |
| CTATGCTCTTCTTCTGTCCA+TGG | - | chr6.1:79571523-79571542 | None:intergenic | 45.0% | |
| CTTGTTGGACTTGAGAAGCT+TGG | + | chr6.1:79571550-79571569 | MS.gene064058:CDS | 45.0% | |
| GGACTTGAGAAGCTTGGAAA+GGG | + | chr6.1:79571556-79571575 | MS.gene064058:CDS | 45.0% | |
| GTTAGAGGATGTAGCCAATC+TGG | - | chr6.1:79572787-79572806 | None:intergenic | 45.0% | |
| TGCTCACATTGTGGGAACAT+AGG | + | chr6.1:79570960-79570979 | MS.gene064058:CDS | 45.0% | |
| TGGACTTGAGAAGCTTGGAA+AGG | + | chr6.1:79571555-79571574 | MS.gene064058:CDS | 45.0% | |
| !! | GCAGAAAGTGCTCACATTGT+GGG | + | chr6.1:79570952-79570971 | MS.gene064058:CDS | 45.0% |
| !!! | TTTTATATATAAATTAAGAA+AGG | - | chr6.1:79571756-79571775 | None:intergenic | 5.0% |
| AGCTTGGAAAGGGAGATTGG+AGG | + | chr6.1:79571566-79571585 | MS.gene064058:CDS | 50.0% | |
| CGTGCCTTTCCAATTCGAAG+TGG | - | chr6.1:79571986-79572005 | None:intergenic | 50.0% | |
| CTTGGAAAGGGAGATTGGAG+GGG | + | chr6.1:79571568-79571587 | MS.gene064058:CDS | 50.0% | |
| GATCTTGAGCTAACTCTGGC+AGG | + | chr6.1:79572862-79572881 | MS.gene064058:CDS | 50.0% | |
| GCCAGAGTTAGCTCAAGATC+AGG | - | chr6.1:79572862-79572881 | None:intergenic | 50.0% | |
| GCTTGGAAAGGGAGATTGGA+GGG | + | chr6.1:79571567-79571586 | MS.gene064058:CDS | 50.0% | |
| ! | GCATGGCTTGCAACTTGTGT+TGG | - | chr6.1:79571625-79571644 | None:intergenic | 50.0% |
| !! | GGCAGAAAGTGCTCACATTG+TGG | + | chr6.1:79570951-79570970 | MS.gene064058:CDS | 50.0% |
| ACATCGGTGCAGGATACGCA+GGG | + | chr6.1:79571290-79571309 | MS.gene064058:intron | 55.0% | |
| GTGCAGGATACGCAGGGATA+CGG | + | chr6.1:79571296-79571315 | MS.gene064058:intron | 55.0% | |
| ! | TGGAAAGGCACGAACGCGTT+TGG | + | chr6.1:79571994-79572013 | MS.gene064058:intron | 55.0% |
| GACATCGGTGCAGGATACGC+AGG | + | chr6.1:79571289-79571308 | MS.gene064058:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 79570948 | 79572960 | 79570948 | ID=MS.gene064058 |
| chr6.1 | mRNA | 79570948 | 79572960 | 79570948 | ID=MS.gene064058.t1;Parent=MS.gene064058 |
| chr6.1 | exon | 79570948 | 79571233 | 79570948 | ID=MS.gene064058.t1.exon1;Parent=MS.gene064058.t1 |
| chr6.1 | CDS | 79570948 | 79571233 | 79570948 | ID=cds.MS.gene064058.t1;Parent=MS.gene064058.t1 |
| chr6.1 | exon | 79571515 | 79571711 | 79571515 | ID=MS.gene064058.t1.exon2;Parent=MS.gene064058.t1 |
| chr6.1 | CDS | 79571515 | 79571711 | 79571515 | ID=cds.MS.gene064058.t1;Parent=MS.gene064058.t1 |
| chr6.1 | exon | 79572556 | 79572960 | 79572556 | ID=MS.gene064058.t1.exon3;Parent=MS.gene064058.t1 |
| chr6.1 | CDS | 79572556 | 79572960 | 79572556 | ID=cds.MS.gene064058.t1;Parent=MS.gene064058.t1 |
| Gene Sequence |
| Protein sequence |
