Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064078.t1 | XP_003626627.1 | 97.9 | 428 | 9 | 0 | 1 | 428 | 1 | 428 | 1.20E-240 | 842 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064078.t1 | Q1STP4 | 97.9 | 428 | 9 | 0 | 1 | 428 | 1 | 428 | 8.6e-241 | 842.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052609 | MS.gene064078 | 0.805385 | 1.37E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064078.t1 | MTR_8g005040 | 97.897 | 428 | 9 | 0 | 1 | 428 | 1 | 428 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064078.t1 | AT5G01010 | 66.282 | 433 | 135 | 3 | 3 | 426 | 2 | 432 | 0.0 | 597 |
MS.gene064078.t1 | AT5G01010 | 60.549 | 474 | 135 | 4 | 3 | 426 | 2 | 473 | 0.0 | 576 |
MS.gene064078.t1 | AT5G01010 | 60.549 | 474 | 135 | 4 | 3 | 426 | 2 | 473 | 0.0 | 576 |
MS.gene064078.t1 | AT5G01010 | 65.952 | 420 | 132 | 3 | 3 | 413 | 2 | 419 | 0.0 | 573 |
MS.gene064078.t1 | AT5G01010 | 59.283 | 474 | 134 | 5 | 3 | 426 | 2 | 466 | 0.0 | 555 |
Find 96 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGGAATTTCTGCACATTAA+TGG | 0.230921 | 8.2:+84200689 | MS.gene064078:intron |
TCGTACTATGACCACTGATT+TGG | 0.264731 | 8.2:+84193527 | MS.gene064078:CDS |
CTGGAAGCTATAAACTGATA+TGG | 0.273766 | 8.2:+84200712 | MS.gene064078:CDS |
AGAGGTTCATCACATTTCTT+AGG | 0.283237 | 8.2:+84197891 | MS.gene064078:CDS |
TTAGGATATTGGATTTAGTT+TGG | 0.287616 | 8.2:+84200290 | MS.gene064078:intron |
TTTGTTTATTGTTAGGATAT+TGG | 0.304837 | 8.2:+84200279 | MS.gene064078:intron |
TTTGAGCTTCCCAAGAATAA+TGG | 0.320376 | 8.2:-84193805 | None:intergenic |
CGTACTATGACCACTGATTT+GGG | 0.334259 | 8.2:+84193528 | MS.gene064078:CDS |
AGTACAAGGCAAGATAAATA+TGG | 0.362025 | 8.2:+84200169 | MS.gene064078:CDS |
TTCATTCCAGCAGATGTTGC+TGG | 0.364334 | 8.2:+84199681 | MS.gene064078:CDS |
GGCTGCTTCTACAGAGGGTT+TGG | 0.370132 | 8.2:+84193410 | MS.gene064078:CDS |
CGACAGGAAGGCCCTAGTTA+TGG | 0.377287 | 8.2:-84193436 | None:intergenic |
GATTCTTCCTTTCATTATCA+TGG | 0.387212 | 8.2:+84196153 | MS.gene064078:CDS |
TTGCTGGTGCAGTGGAAATA+AGG | 0.393624 | 8.2:+84199697 | MS.gene064078:CDS |
ACTGTAGGTGCTACGGTATA+AGG | 0.397024 | 8.2:+84201119 | MS.gene064078:intron |
AATGGCACTGGCTCTGCAAC+AGG | 0.413130 | 8.2:-84201156 | None:intergenic |
CATCAATCTTATGCGGAGGT+TGG | 0.413624 | 8.2:-84193578 | None:intergenic |
CTGGATTACATTACCGTGTC+TGG | 0.414338 | 8.2:-84193666 | None:intergenic |
GCAAGCAGAGGTGGATGCTT+TGG | 0.423060 | 8.2:+84193974 | MS.gene064078:CDS |
ATCAATCTTATGCGGAGGTT+GGG | 0.427319 | 8.2:-84193577 | None:intergenic |
AGGGGAACAGTTAGCTGTCT+TGG | 0.427621 | 8.2:+84197835 | MS.gene064078:CDS |
GTGGATGCTTTGGTAAATTC+TGG | 0.428219 | 8.2:+84193984 | MS.gene064078:CDS |
GCTCAGCTTGGCTCTGCAAC+AGG | 0.429973 | 8.2:+84194071 | MS.gene064078:CDS |
GGAGAAAGAGGAGGAGTGAA+GGG | 0.434405 | 8.2:-84193477 | None:intergenic |
GACAGGAAGGCCCTAGTTAT+GGG | 0.435903 | 8.2:-84193435 | None:intergenic |
TCATCGCACTTTGACCACTT+TGG | 0.439826 | 8.2:+84193836 | MS.gene064078:CDS |
ACCCTCGTCAAGTACCTTGT+TGG | 0.452026 | 8.2:+84194104 | MS.gene064078:CDS |
TTCGATGGCTGCTTCTACAG+AGG | 0.455348 | 8.2:+84193404 | None:intergenic |
AGCTGTTGATGTCTACACTA+TGG | 0.459802 | 8.2:+84197862 | MS.gene064078:CDS |
AGGGTTTGGTGCCCATAACT+AGG | 0.461857 | 8.2:+84193424 | MS.gene064078:CDS |
GCGATGACGCTGCTCCTCCA+TGG | 0.464270 | 8.2:-84196084 | None:intergenic |
ATTCTTCCTTTCATTATCAT+GGG | 0.475061 | 8.2:+84196154 | MS.gene064078:CDS |
GAAGTAAGGTGAGAGACGTC+TGG | 0.478606 | 8.2:-84193498 | None:intergenic |
TTGCATCAGTCGAATGGCAC+TGG | 0.479589 | 8.2:-84201168 | None:intergenic |
TTGGAGTTTGCAAGTCCTAC+CGG | 0.480664 | 8.2:+84200309 | MS.gene064078:CDS |
ACTGCACCAGCAACATCTGC+TGG | 0.481617 | 8.2:-84199687 | None:intergenic |
GTGATCGATATGCTCTTCTC+TGG | 0.488861 | 8.2:+84194018 | MS.gene064078:CDS |
ATGGAAAATTGAATATTGTC+AGG | 0.491325 | 8.2:-84193786 | None:intergenic |
TGGAGAAAGAGGAGGAGTGA+AGG | 0.493800 | 8.2:-84193478 | None:intergenic |
TGGAAGCTATAAACTGATAT+GGG | 0.497013 | 8.2:+84200713 | MS.gene064078:CDS |
ATGATAATGAAAGGAAGAAT+CGG | 0.504065 | 8.2:-84196151 | None:intergenic |
TGAGAGACGTCTGGAGAAAG+AGG | 0.507695 | 8.2:-84193489 | None:intergenic |
TAGTACGAAGCAGAGAAGTA+AGG | 0.514503 | 8.2:-84193512 | None:intergenic |
GAGGAATAAGCAAGCAGAGG+TGG | 0.517070 | 8.2:+84193965 | MS.gene064078:CDS |
AATTTCTGCACATTAATGGC+TGG | 0.520564 | 8.2:+84200693 | MS.gene064078:CDS |
ATTGAGGTGAGGCTGTATAA+TGG | 0.524864 | 8.2:-84196116 | None:intergenic |
GAGGAGCAGCGTCATCGCTA+TGG | 0.528258 | 8.2:+84196089 | MS.gene064078:CDS |
CAGTAAACTCGTATATTGCA+TGG | 0.528695 | 8.2:+84200135 | MS.gene064078:CDS |
CGATGACGCTGCTCCTCCAT+GGG | 0.529566 | 8.2:-84196083 | None:intergenic |
AAAGAGATAAGTGTTCCAGC+TGG | 0.530707 | 8.2:+84199807 | MS.gene064078:CDS |
TGGAGTTTGCAAGTCCTACC+GGG | 0.533936 | 8.2:+84200310 | MS.gene064078:CDS |
TCTTCTCTGGAAACAACAAA+TGG | 0.535849 | 8.2:+84194031 | MS.gene064078:CDS |
ATATCAGGTTATACTTTCAG+TGG | 0.541751 | 8.2:+84200109 | MS.gene064078:intron |
TCGATGGCTGCTTCTACAGA+GGG | 0.545336 | 8.2:+84193405 | None:intergenic |
CTTATCTACTGGTAGGCCCA+TGG | 0.549474 | 8.2:+84196067 | MS.gene064078:intron |
GGCAGATTAATGACGATGAC+GGG | 0.550469 | 8.2:+84195906 | MS.gene064078:CDS |
TCAGACTCGTATCGGCGGTA+AGG | 0.558609 | 8.2:-84200571 | None:intergenic |
GGGTTTGGTGCCCATAACTA+GGG | 0.559944 | 8.2:+84193425 | MS.gene064078:CDS |
GAGAAAGAGGAGGAGTGAAG+GGG | 0.566570 | 8.2:-84193476 | None:intergenic |
ACATCTGCTGGAATGAAGAA+AGG | 0.566781 | 8.2:-84199675 | None:intergenic |
AGAAGGCAATTAGCTCAGCT+TGG | 0.567507 | 8.2:+84194059 | MS.gene064078:CDS |
AGCGTTCGCGTTGTTGTCTG+AGG | 0.569416 | 8.2:-84193938 | None:intergenic |
TATAATGACTGTAGGTGCTA+CGG | 0.577224 | 8.2:+84201112 | MS.gene064078:intron |
TCTGGAAACAACAAATGGAA+AGG | 0.577715 | 8.2:+84194036 | MS.gene064078:CDS |
CTCCAACAAGGTACTTGACG+AGG | 0.578652 | 8.2:-84194106 | None:intergenic |
AAGAGATAAGTGTTCCAGCT+GGG | 0.581420 | 8.2:+84199808 | MS.gene064078:CDS |
ATCGTGCCCATGATAATGAA+AGG | 0.583994 | 8.2:-84196160 | None:intergenic |
AACAACAAATGGAAAGGAGA+AGG | 0.585723 | 8.2:+84194042 | MS.gene064078:CDS |
AGCAGATGTTGCTGGTGCAG+TGG | 0.597546 | 8.2:+84199689 | MS.gene064078:CDS |
GTTTGTCGTAGTAAGACGAC+AGG | 0.600262 | 8.2:-84193452 | None:intergenic |
AGTAAACTCGTATATTGCAT+GGG | 0.604344 | 8.2:+84200136 | MS.gene064078:CDS |
AGAGAAGAGCATATCGATCA+CGG | 0.605518 | 8.2:-84194016 | None:intergenic |
TAACTTGGTCAGACTCGTAT+CGG | 0.609024 | 8.2:-84200579 | None:intergenic |
TCTACACTATGGAGTTTGAG+AGG | 0.613870 | 8.2:+84197873 | MS.gene064078:CDS |
GTACCTTGTTGGAGTTCCTG+AGG | 0.616247 | 8.2:+84194115 | MS.gene064078:CDS |
AGGCAGATTAATGACGATGA+CGG | 0.621786 | 8.2:+84195905 | MS.gene064078:CDS |
ACAATCTAATTGGCCAGACA+CGG | 0.626292 | 8.2:+84193653 | MS.gene064078:CDS |
AAATTGAATATTGTCAGGTG+TGG | 0.634595 | 8.2:-84193781 | None:intergenic |
GGCACTGGCTCTGCAACAGG+AGG | 0.638970 | 8.2:-84201153 | None:intergenic |
ATCATCAATTCCCAAATCAG+TGG | 0.640263 | 8.2:-84193538 | None:intergenic |
ATATTAATTTGTCAGAAAAG+GGG | 0.642676 | 8.2:+84197817 | MS.gene064078:intron |
AGAGAGGAATAAGCAAGCAG+AGG | 0.647377 | 8.2:+84193962 | MS.gene064078:CDS |
TCGGACAGAAAGAATCATTG+AGG | 0.651275 | 8.2:-84196132 | None:intergenic |
CAGAAAGAATCATTGAGGTG+AGG | 0.658338 | 8.2:-84196127 | None:intergenic |
GAGACGTCTGGAGAAAGAGG+AGG | 0.662195 | 8.2:-84193486 | None:intergenic |
GTCGTAGTAAGACGACAGGA+AGG | 0.670921 | 8.2:-84193448 | None:intergenic |
TCCAACAAGGTACTTGACGA+GGG | 0.671006 | 8.2:-84194105 | None:intergenic |
ATAAGATTGATGAAAACATG+TGG | 0.672344 | 8.2:+84193589 | MS.gene064078:CDS |
AGAGTTCCTCGAAAATCTTG+TGG | 0.681900 | 8.2:-84193915 | None:intergenic |
AACAACGCGAACGCTCAGAG+AGG | 0.685075 | 8.2:+84193946 | MS.gene064078:CDS |
CTTGGTCAGACTCGTATCGG+CGG | 0.685715 | 8.2:-84200576 | None:intergenic |
GGAGTTTGCAAGTCCTACCG+GGG | 0.692066 | 8.2:+84200311 | MS.gene064078:CDS |
GATTTGGAAAGATTCCAAAG+TGG | 0.692886 | 8.2:-84193850 | None:intergenic |
ATCTACTGGTAGGCCCATGG+AGG | 0.694772 | 8.2:+84196070 | MS.gene064078:intron |
ATACCTCAGGAACTCCAACA+AGG | 0.706412 | 8.2:-84194118 | None:intergenic |
GAGGTGAGGCTGTATAATGG+TGG | 0.725726 | 8.2:-84196113 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 84193408 | 84201185 | 84193408 | ID=MS.gene064078 |
chr8.2 | mRNA | 84193408 | 84201185 | 84193408 | ID=MS.gene064078.t1;Parent=MS.gene064078 |
chr8.2 | exon | 84193408 | 84193674 | 84193408 | ID=MS.gene064078.t1.exon1;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84193408 | 84193674 | 84193408 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84193765 | 84194136 | 84193765 | ID=MS.gene064078.t1.exon2;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84193765 | 84194136 | 84193765 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84195887 | 84195927 | 84195887 | ID=MS.gene064078.t1.exon3;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84195887 | 84195927 | 84195887 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84196082 | 84196198 | 84196082 | ID=MS.gene064078.t1.exon4;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84196082 | 84196198 | 84196082 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84197832 | 84197912 | 84197832 | ID=MS.gene064078.t1.exon5;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84197832 | 84197912 | 84197832 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84199656 | 84199718 | 84199656 | ID=MS.gene064078.t1.exon6;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84199656 | 84199718 | 84199656 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84199791 | 84199842 | 84199791 | ID=MS.gene064078.t1.exon7;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84199791 | 84199842 | 84199791 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84200116 | 84200190 | 84200116 | ID=MS.gene064078.t1.exon8;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84200116 | 84200190 | 84200116 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84200294 | 84200341 | 84200294 | ID=MS.gene064078.t1.exon9;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84200294 | 84200341 | 84200294 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84200562 | 84200597 | 84200562 | ID=MS.gene064078.t1.exon10;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84200562 | 84200597 | 84200562 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84200690 | 84200764 | 84200690 | ID=MS.gene064078.t1.exon11;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84200690 | 84200764 | 84200690 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
chr8.2 | exon | 84201126 | 84201185 | 84201126 | ID=MS.gene064078.t1.exon12;Parent=MS.gene064078.t1 |
chr8.2 | CDS | 84201126 | 84201185 | 84201126 | ID=cds.MS.gene064078.t1;Parent=MS.gene064078.t1 |
Gene Sequence |
Protein sequence |