Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064390.t1 | XP_013459832.1 | 81.5 | 1073 | 117 | 2 | 1 | 992 | 125 | 1197 | 0.00E+00 | 1249.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064390.t1 | Q9LXF4 | 34.6 | 1081 | 601 | 12 | 1 | 993 | 165 | 1227 | 6.9e-115 | 416.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064390.t1 | A0A072UXS8 | 81.5 | 1073 | 117 | 2 | 1 | 992 | 125 | 1197 | 0.0e+00 | 1249.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056552 | MS.gene064390 | 0.80187 | 7.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 181 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAGGCGTTTCAGATTT+TGG | 0.102884 | 3.1:+40086579 | MS.gene064390:CDS |
| AATGGGAAATGGACTTTATT+TGG | 0.114728 | 3.1:+40086675 | MS.gene064390:CDS |
| GCTTTGTAACCTGCTTATTC+AGG | 0.224650 | 3.1:+40087704 | MS.gene064390:CDS |
| CGATCACGAAACCCTGAATT+TGG | 0.230450 | 3.1:+40086963 | MS.gene064390:CDS |
| GCTACAAAACTGTTTATTCT+TGG | 0.231757 | 3.1:+40087359 | MS.gene064390:CDS |
| GTAATTGTAATCAATATTAT+TGG | 0.236298 | 3.1:-40088324 | None:intergenic |
| ACATTGCTTGTACAAATAAA+TGG | 0.258453 | 3.1:+40087145 | MS.gene064390:CDS |
| TTCCTTCGAGGTTGTGTTAT+CGG | 0.272291 | 3.1:+40085805 | MS.gene064390:CDS |
| TTTGGTTAAACTTTCTTCTA+TGG | 0.279652 | 3.1:+40086546 | MS.gene064390:CDS |
| TGATATGATGGATAGAAATT+TGG | 0.285300 | 3.1:+40087458 | MS.gene064390:CDS |
| ATTTCGACTGTGTCGATTCT+TGG | 0.286662 | 3.1:-40088533 | None:intergenic |
| GGCGTTTGATTTGGTCGATT+TGG | 0.293822 | 3.1:+40085881 | MS.gene064390:CDS |
| CATGTCAGTGATCAAACTTT+TGG | 0.296495 | 3.1:+40086912 | MS.gene064390:CDS |
| ATGCCTGTATAACCAAATTC+AGG | 0.307327 | 3.1:-40086975 | None:intergenic |
| TCAAGGCTTCTTTCTAAAAC+TGG | 0.308000 | 3.1:+40088830 | MS.gene064390:CDS |
| CTTTCTGCTAAGGGTCTTAC+TGG | 0.313485 | 3.1:+40087312 | MS.gene064390:CDS |
| AGCAGAGTTCTTTGACGAAA+TGG | 0.322884 | 3.1:+40086657 | MS.gene064390:CDS |
| GAGGAATTTAAACTTCTAAT+TGG | 0.323427 | 3.1:+40087180 | MS.gene064390:CDS |
| TGAAGGATTTCAATTATTAC+TGG | 0.327740 | 3.1:+40087121 | MS.gene064390:CDS |
| GGGTTTCGTGATCGAGTTCC+CGG | 0.329010 | 3.1:-40086954 | None:intergenic |
| TTGTATCGATGGGAAGATTC+AGG | 0.330937 | 3.1:+40085959 | MS.gene064390:CDS |
| GGCTTTCCACAATTCTTGTT+TGG | 0.334633 | 3.1:-40088232 | None:intergenic |
| AGACCAATGTATATCAAAAT+CGG | 0.337600 | 3.1:-40088744 | None:intergenic |
| TGAAAGCAGACTCCCTGTTC+CGG | 0.341756 | 3.1:+40087646 | MS.gene064390:CDS |
| TTTATTATGAAATGCTAAAC+TGG | 0.343531 | 3.1:+40088501 | MS.gene064390:CDS |
| AGCTCTCCCTCTCAAGTTAC+AGG | 0.350251 | 3.1:+40087796 | MS.gene064390:CDS |
| GTGCAAGCCATGCAGGAAAA+AGG | 0.357538 | 3.1:+40088713 | MS.gene064390:CDS |
| CTACGGTTTCTTGCAATGTA+AGG | 0.360640 | 3.1:+40088037 | MS.gene064390:CDS |
| GCGTTTGATTTGGTCGATTT+GGG | 0.361801 | 3.1:+40085882 | MS.gene064390:CDS |
| GGAGTTTCGTTTAATGCAAT+TGG | 0.362472 | 3.1:+40085684 | MS.gene064390:CDS |
| GGTTGAAGAAATGCTTTGTT+GGG | 0.370976 | 3.1:+40086822 | MS.gene064390:CDS |
| GTTCAGGTAACAGCAATTCT+TGG | 0.372866 | 3.1:-40086846 | None:intergenic |
| TTATCTAAACTTAGCCCTTC+CGG | 0.375140 | 3.1:-40087678 | None:intergenic |
| TGAAGGGTATGTTGGTGTTA+AGG | 0.379995 | 3.1:+40085731 | MS.gene064390:CDS |
| TTCTTTGACGAAATGGGAAA+TGG | 0.380250 | 3.1:+40086664 | MS.gene064390:CDS |
| TCCTTCGAGGTTGTGTTATC+GGG | 0.381043 | 3.1:+40085806 | MS.gene064390:CDS |
| GTATGTTGGTGTTAAGGAAT+TGG | 0.382404 | 3.1:+40085737 | MS.gene064390:CDS |
| AGTTTAAATTCCTCCAACTT+TGG | 0.383394 | 3.1:-40087171 | None:intergenic |
| TTCTTTAAGCTCAGTGCAAA+CGG | 0.386222 | 3.1:-40087855 | None:intergenic |
| ACTGAGCTTAAAGAACCTTA+TGG | 0.386405 | 3.1:+40087863 | MS.gene064390:CDS |
| AACCCTGAATTTGGTTATAC+AGG | 0.394254 | 3.1:+40086972 | MS.gene064390:CDS |
| CCACAAAACCATGGGAAAGA+AGG | 0.395911 | 3.1:-40088253 | None:intergenic |
| CCTGTTCCGGGATATGTTAC+CGG | 0.402691 | 3.1:+40087659 | MS.gene064390:CDS |
| TTCATCCCTTTATGTAGAAA+AGG | 0.403574 | 3.1:+40087093 | MS.gene064390:CDS |
| TAATTGTAATCAATATTATT+GGG | 0.406510 | 3.1:-40088323 | None:intergenic |
| GAATTTGATTAGTTCGTTAG+AGG | 0.408561 | 3.1:+40085656 | MS.gene064390:CDS |
| GTTAATCCCTCAATTGTGTA+AGG | 0.410089 | 3.1:+40087506 | MS.gene064390:CDS |
| CTTACTAACATCGAGAGTTC+AGG | 0.410820 | 3.1:-40086862 | None:intergenic |
| GAGAAATGTGGAGGATGTTA+TGG | 0.412757 | 3.1:+40085929 | MS.gene064390:CDS |
| GAAAGCAGACTCCCTGTTCC+GGG | 0.414053 | 3.1:+40087647 | MS.gene064390:CDS |
| GAAGGAGATACTAAGTGAAA+TGG | 0.415114 | 3.1:+40087968 | MS.gene064390:CDS |
| CTAAAACTGGCTTTCTTCAA+AGG | 0.417877 | 3.1:+40088843 | MS.gene064390:CDS |
| AAATCATAACTCGTTGAAAT+CGG | 0.419960 | 3.1:-40088428 | None:intergenic |
| CCGGTAACATATCCCGGAAC+AGG | 0.423699 | 3.1:-40087659 | None:intergenic |
| TGGTTGAAGAAATGCTTTGT+TGG | 0.431448 | 3.1:+40086821 | MS.gene064390:CDS |
| GCAGAGTTCTTTGACGAAAT+GGG | 0.431675 | 3.1:+40086658 | MS.gene064390:CDS |
| TTTGAGTCCCTTTGAAATCA+TGG | 0.436429 | 3.1:-40088090 | None:intergenic |
| TTATTACCTTCCTTAAGCTT+CGG | 0.436881 | 3.1:-40088121 | None:intergenic |
| CGAGATGGAGAACCGTGGTT+TGG | 0.437686 | 3.1:+40086528 | MS.gene064390:CDS |
| TCTAGAAGTACTTTCTGCTA+AGG | 0.440261 | 3.1:+40087302 | MS.gene064390:CDS |
| GCTAATGACTTAAGAAAAGT+AGG | 0.440680 | 3.1:+40087738 | MS.gene064390:CDS |
| TGTAAGATAATGCAAAGAAC+TGG | 0.441866 | 3.1:-40088066 | None:intergenic |
| GTTTCGTGTGGCGTTTGATT+TGG | 0.446187 | 3.1:+40085872 | MS.gene064390:CDS |
| ATGCCATCAGAAAATGCTTT+CGG | 0.452118 | 3.1:+40087209 | MS.gene064390:CDS |
| CGTTTCAATCTCACACTCAA+AGG | 0.452534 | 3.1:-40086610 | None:intergenic |
| AAATAAATGGTTACCAAAGT+TGG | 0.453999 | 3.1:+40087158 | MS.gene064390:CDS |
| ATTTGGATATTGTGAGAAGA+AGG | 0.457402 | 3.1:+40086067 | MS.gene064390:CDS |
| CTATTACCAGCTATTATACT+AGG | 0.458029 | 3.1:-40086134 | None:intergenic |
| AACCGAGTGACCGAAGCTTA+AGG | 0.458195 | 3.1:+40088111 | MS.gene064390:CDS |
| GTTTGATAAAGTGAAAAGTC+TGG | 0.458769 | 3.1:+40086501 | MS.gene064390:CDS |
| TTCCTTAAGCTTCGGTCACT+CGG | 0.461206 | 3.1:-40088113 | None:intergenic |
| TTGACAGATGAACTGAAGTT+CGG | 0.462253 | 3.1:-40086757 | None:intergenic |
| CTTGATGAGATGATTGATAG+AGG | 0.463408 | 3.1:+40086418 | MS.gene064390:CDS |
| CCTCTCAAGTTACAGGAACT+TGG | 0.463566 | 3.1:+40087803 | MS.gene064390:CDS |
| TACAATATTCGATGATATGA+TGG | 0.472622 | 3.1:+40087446 | MS.gene064390:CDS |
| TGAGTTTGGAAGATTAAAGA+AGG | 0.475277 | 3.1:+40088364 | MS.gene064390:CDS |
| TATGAGCCTTACACAATTGA+GGG | 0.475647 | 3.1:-40087512 | None:intergenic |
| GTTTACTCAGGTTAGTAGCT+TGG | 0.476083 | 3.1:+40086028 | MS.gene064390:CDS |
| GACCAATGTATATCAAAATC+GGG | 0.479576 | 3.1:-40088743 | None:intergenic |
| CTTTGTAACCTGCTTATTCA+GGG | 0.479888 | 3.1:+40087705 | MS.gene064390:CDS |
| CTAGAAGTACTTTCTGCTAA+GGG | 0.486026 | 3.1:+40087303 | MS.gene064390:CDS |
| AAAATTGTGTTCGACGAAGT+TGG | 0.486709 | 3.1:+40087999 | MS.gene064390:CDS |
| CTATGAGCCTTACACAATTG+AGG | 0.487219 | 3.1:-40087513 | None:intergenic |
| TCTTTAAGCTCAGTGCAAAC+GGG | 0.487400 | 3.1:-40087854 | None:intergenic |
| CTTACAACCATGATTTCAAA+GGG | 0.488768 | 3.1:+40088083 | MS.gene064390:CDS |
| GAAAATGCCGAGGTCTGCCC+GGG | 0.490368 | 3.1:+40086936 | MS.gene064390:CDS |
| AGTCAAGAAATGGGATATAG+AGG | 0.491088 | 3.1:+40088188 | MS.gene064390:CDS |
| CTTGTTATAATAATCTTACA+AGG | 0.491127 | 3.1:+40087388 | MS.gene064390:CDS |
| ACCCTAAAAGTCGAAACATC+AGG | 0.494407 | 3.1:-40086448 | None:intergenic |
| AGGAAGCAAGAAGCTTGATT+CGG | 0.496990 | 3.1:+40085979 | MS.gene064390:CDS |
| GTTTCAATCTCACACTCAAA+GGG | 0.499830 | 3.1:-40086609 | None:intergenic |
| GCCCTTCCGGTAACATATCC+CGG | 0.503552 | 3.1:-40087665 | None:intergenic |
| AGAAAATGCCGAGGTCTGCC+CGG | 0.506424 | 3.1:+40086935 | MS.gene064390:CDS |
| TGTTGCGATAAGAAAGAGTT+GGG | 0.506619 | 3.1:+40087773 | MS.gene064390:CDS |
| GGTCAAAACTATCTTGTCTA+CGG | 0.512107 | 3.1:+40088020 | MS.gene064390:CDS |
| GTGAACGTTGTGCAACCATA+AGG | 0.512116 | 3.1:-40087878 | None:intergenic |
| TGTGGAATTGAGTCAAGAAA+TGG | 0.513296 | 3.1:+40088178 | MS.gene064390:CDS |
| TCTTACAACCATGATTTCAA+AGG | 0.519476 | 3.1:+40088082 | MS.gene064390:CDS |
| GTATCTCCTTCACATCCAAC+CGG | 0.519625 | 3.1:-40087956 | None:intergenic |
| ACTCGTTGAAATCGGAATGT+TGG | 0.520326 | 3.1:-40088420 | None:intergenic |
| TGCCTGTATAACCAAATTCA+GGG | 0.520823 | 3.1:-40086974 | None:intergenic |
| TATGGAGAGTCCGCTTTCAA+AGG | 0.521520 | 3.1:+40086564 | MS.gene064390:CDS |
| AAACTAATTGAAGGGTATGT+TGG | 0.522546 | 3.1:+40085723 | MS.gene064390:CDS |
| ATCTGAAACGCCTTTGAAAG+CGG | 0.524917 | 3.1:-40086574 | None:intergenic |
| GTGTTTAGCTTCTGCGAACG+TGG | 0.526069 | 3.1:+40088560 | MS.gene064390:CDS |
| TCGAGTTCCCGGGCAGACCT+CGG | 0.526275 | 3.1:-40086943 | None:intergenic |
| GTGGAAAGCCTTCTTTCCCA+TGG | 0.529076 | 3.1:+40088245 | MS.gene064390:CDS |
| AAAGAGGGATGGTTCCTTCG+AGG | 0.532673 | 3.1:+40085793 | MS.gene064390:CDS |
| AGATCTCGTGCAAGCCATGC+AGG | 0.532980 | 3.1:+40088706 | MS.gene064390:CDS |
| TTAAGTCATTAGCTTGGCAA+TGG | 0.536628 | 3.1:-40087728 | None:intergenic |
| GAAAAGTCTGGTTTGCGAGA+TGG | 0.536813 | 3.1:+40086513 | MS.gene064390:CDS |
| AAGAAATGGGATATAGAGGA+TGG | 0.536940 | 3.1:+40088192 | MS.gene064390:CDS |
| AGAAAAGTAGGGGAGCTACT+TGG | 0.538680 | 3.1:+40087750 | MS.gene064390:CDS |
| CATGGAAAAGAATCTTAAGA+AGG | 0.538696 | 3.1:+40088679 | MS.gene064390:CDS |
| TATGCTCCTAGTATAATAGC+TGG | 0.539428 | 3.1:+40086128 | MS.gene064390:CDS |
| CTAATGACTTAAGAAAAGTA+GGG | 0.541706 | 3.1:+40087739 | MS.gene064390:CDS |
| ATTAGTTCGTTAGAGGGTCA+AGG | 0.541948 | 3.1:+40085663 | MS.gene064390:CDS |
| CAGGGTATTGTAATTCTAGA+CGG | 0.545724 | 3.1:+40086479 | MS.gene064390:CDS |
| TATGAGGGAATGAAGGAAAG+AGG | 0.545936 | 3.1:+40085777 | MS.gene064390:CDS |
| ATGAGGGAATGAAGGAAAGA+GGG | 0.547994 | 3.1:+40085778 | MS.gene064390:CDS |
| GGCAATGGCCCTGAATAAGC+AGG | 0.549124 | 3.1:-40087713 | None:intergenic |
| TTCCGGGATATGTTACCGGA+AGG | 0.550306 | 3.1:+40087663 | MS.gene064390:CDS |
| TTTGTCAAGTGGATACCGGT+TGG | 0.551034 | 3.1:+40087941 | MS.gene064390:CDS |
| TGGATACCGGTTGGATGTGA+AGG | 0.551503 | 3.1:+40087950 | MS.gene064390:CDS |
| AATTTGATTAGTTCGTTAGA+GGG | 0.554758 | 3.1:+40085657 | MS.gene064390:CDS |
| TGTTTAGCTTCTGCGAACGT+GGG | 0.558685 | 3.1:+40088561 | MS.gene064390:CDS |
| AGCAAGAAGCTTGATTCGGA+AGG | 0.559466 | 3.1:+40085983 | MS.gene064390:CDS |
| AATGTATATCAAAATCGGGC+TGG | 0.565506 | 3.1:-40088739 | None:intergenic |
| CAACGCACGATGAACGGCAT+GGG | 0.565876 | 3.1:-40087592 | None:intergenic |
| GCATATCAACGCACGATGAA+CGG | 0.565994 | 3.1:-40087598 | None:intergenic |
| ATATATCTAACCTTAGTTGA+GGG | 0.568663 | 3.1:-40087269 | None:intergenic |
| ATGTAGAAAAGGAAACATGA+AGG | 0.569653 | 3.1:+40087104 | MS.gene064390:CDS |
| TAAATGGTTACCAAAGTTGG+AGG | 0.570146 | 3.1:+40087161 | MS.gene064390:CDS |
| GGTTTCGTGATCGAGTTCCC+GGG | 0.573097 | 3.1:-40086953 | None:intergenic |
| TTTGATTTGGTCGATTTGGG+TGG | 0.573335 | 3.1:+40085885 | MS.gene064390:CDS |
| TATATATCTAACCTTAGTTG+AGG | 0.579372 | 3.1:-40087270 | None:intergenic |
| TCACATCCAAACAAGAATTG+TGG | 0.579837 | 3.1:+40088226 | MS.gene064390:CDS |
| TCAACGCACGATGAACGGCA+TGG | 0.580214 | 3.1:-40087593 | None:intergenic |
| CAAGTTCCTGTAACTTGAGA+GGG | 0.587768 | 3.1:-40087802 | None:intergenic |
| AGGAATGTTAGAGAATGCTA+AGG | 0.590817 | 3.1:+40086390 | MS.gene064390:intron |
| GTGGAATTGAGTCAAGAAAT+GGG | 0.591383 | 3.1:+40088179 | MS.gene064390:CDS |
| ATAAGTAGTCTGTGTGATGT+CGG | 0.591479 | 3.1:+40088140 | MS.gene064390:CDS |
| TATACAGGCATACAGCAAGA+AGG | 0.595853 | 3.1:+40086987 | MS.gene064390:CDS |
| TGTTATAATAATCTTACAAG+GGG | 0.599186 | 3.1:+40087390 | MS.gene064390:CDS |
| CCAAGTTCCTGTAACTTGAG+AGG | 0.600425 | 3.1:-40087803 | None:intergenic |
| ACAAGGGGCTTATGCAATGA+GGG | 0.600589 | 3.1:+40087405 | MS.gene064390:CDS |
| TGAACGGCATGGGAAAATGA+AGG | 0.601755 | 3.1:-40087582 | None:intergenic |
| TTGTGATGAGATGAGAAATG+TGG | 0.602988 | 3.1:+40085917 | MS.gene064390:CDS |
| TACAAGGGGCTTATGCAATG+AGG | 0.603676 | 3.1:+40087404 | MS.gene064390:CDS |
| CTCCGCGGATCATGTCCACT+AGG | 0.603699 | 3.1:-40088607 | None:intergenic |
| TTGTTATAATAATCTTACAA+GGG | 0.605619 | 3.1:+40087389 | MS.gene064390:CDS |
| GGGAATGAAGGAAAGAGGGA+TGG | 0.606070 | 3.1:+40085782 | MS.gene064390:CDS |
| CGGTAACATATCCCGGAACA+GGG | 0.607008 | 3.1:-40087658 | None:intergenic |
| ATACAGGCATACAGCAAGAA+GGG | 0.613581 | 3.1:+40086988 | MS.gene064390:CDS |
| CGGCGAACTACAAAATGCTG+TGG | 0.614040 | 3.1:+40088160 | MS.gene064390:CDS |
| GTGTTGCGATAAGAAAGAGT+TGG | 0.614686 | 3.1:+40087772 | MS.gene064390:CDS |
| AGTGCAGATTGCGTTTCGTG+TGG | 0.616072 | 3.1:+40085860 | MS.gene064390:CDS |
| ACCCGATAACACAACCTCGA+AGG | 0.616568 | 3.1:-40085807 | None:intergenic |
| GTTCATCGTGCGTTGATATG+CGG | 0.617136 | 3.1:+40087600 | MS.gene064390:CDS |
| GGTGCGATCGATGTGTATGA+AGG | 0.618753 | 3.1:+40087824 | MS.gene064390:CDS |
| TGTAATTAAAAGTTATCACA+TGG | 0.623517 | 3.1:+40088661 | MS.gene064390:CDS |
| GATACTGATAATGGCAACAA+GGG | 0.625185 | 3.1:+40088800 | MS.gene064390:CDS |
| ATTCTGTGCACAAAATGAGT+TGG | 0.625640 | 3.1:+40088463 | MS.gene064390:CDS |
| TGAACTGAAGTTCGGTAACA+CGG | 0.626351 | 3.1:-40086749 | None:intergenic |
| AGATACTGATAATGGCAACA+AGG | 0.628894 | 3.1:+40088799 | MS.gene064390:CDS |
| TTAGCTTCTGCGAACGTGGG+AGG | 0.629845 | 3.1:+40088564 | MS.gene064390:CDS |
| TCCGGGATATGTTACCGGAA+GGG | 0.633672 | 3.1:+40087664 | MS.gene064390:CDS |
| TAATGACTTAAGAAAAGTAG+GGG | 0.648520 | 3.1:+40087740 | MS.gene064390:CDS |
| TCGTCGGCGTTTCGCCTCCG+CGG | 0.658527 | 3.1:-40088622 | None:intergenic |
| TGATGAGATGAGAAATGTGG+AGG | 0.658728 | 3.1:+40085920 | MS.gene064390:CDS |
| CTTCAAGAATTGAAGCAACG+TGG | 0.661073 | 3.1:-40086723 | None:intergenic |
| GTGCGATCGATGTGTATGAA+GGG | 0.662084 | 3.1:+40087825 | MS.gene064390:CDS |
| GTTGAAGAAATGCTTTGTTG+GGG | 0.662744 | 3.1:+40086823 | MS.gene064390:CDS |
| GAGTGACCGAAGCTTAAGGA+AGG | 0.663811 | 3.1:+40088115 | MS.gene064390:CDS |
| TTCCTAGTGGACATGATCCG+CGG | 0.664689 | 3.1:+40088605 | MS.gene064390:CDS |
| AAGAAAGTTTAACCAAACCA+CGG | 0.676132 | 3.1:-40086540 | None:intergenic |
| ACAAGCAGAACAATTCCTAG+TGG | 0.677314 | 3.1:+40088592 | MS.gene064390:CDS |
| GTTTGCGAGATGGAGAACCG+TGG | 0.697613 | 3.1:+40086523 | MS.gene064390:CDS |
| AAGACTGAAACATCTAAACA+AGG | 0.699539 | 3.1:-40087483 | None:intergenic |
| ACATAAAGGGATGAATAACG+AGG | 0.756070 | 3.1:-40087085 | None:intergenic |
| CTAGTGGACATGATCCGCGG+AGG | 0.759235 | 3.1:+40088608 | MS.gene064390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGTAATCAATATTATT+GGG | - | chr3.1:40088326-40088345 | None:intergenic | 10.0% |
| !! | GTAATTGTAATCAATATTAT+TGG | - | chr3.1:40088327-40088346 | None:intergenic | 15.0% |
| !! | TTGTTATAATAATCTTACAA+GGG | + | chr3.1:40087389-40087408 | MS.gene064390:CDS | 15.0% |
| !! | AAAGAAAAAGATACTGATAA+TGG | + | chr3.1:40088791-40088810 | MS.gene064390:CDS | 20.0% |
| !! | AAATGCATTGAGTTATTTAT+TGG | + | chr3.1:40086297-40086316 | MS.gene064390:intron | 20.0% |
| !! | TAATAACCTAAAAAATGCAT+TGG | + | chr3.1:40086795-40086814 | MS.gene064390:CDS | 20.0% |
| !! | TGTAATTAAAAGTTATCACA+TGG | + | chr3.1:40088661-40088680 | MS.gene064390:CDS | 20.0% |
| !! | TGTTATAATAATCTTACAAG+GGG | + | chr3.1:40087390-40087409 | MS.gene064390:CDS | 20.0% |
| !! | TTTATTATGAAATGCTAAAC+TGG | + | chr3.1:40088501-40088520 | MS.gene064390:CDS | 20.0% |
| !!! | ATTATCAGTATCTTTTTCTT+TGG | - | chr3.1:40088792-40088811 | None:intergenic | 20.0% |
| !!! | CTTGTTATAATAATCTTACA+AGG | + | chr3.1:40087388-40087407 | MS.gene064390:CDS | 20.0% |
| !!! | TTTTTGAGAAACTAATTGAA+GGG | + | chr3.1:40085715-40085734 | MS.gene064390:CDS | 20.0% |
| ! | AAATAAATGGTTACCAAAGT+TGG | + | chr3.1:40087158-40087177 | MS.gene064390:CDS | 25.0% |
| ! | AAATCATAACTCGTTGAAAT+CGG | - | chr3.1:40088431-40088450 | None:intergenic | 25.0% |
| ! | ACATTGCTTGTACAAATAAA+TGG | + | chr3.1:40087145-40087164 | MS.gene064390:CDS | 25.0% |
| ! | ACTTATAATGCTCTTATAAG+TGG | + | chr3.1:40086355-40086374 | MS.gene064390:intron | 25.0% |
| ! | AGACCAATGTATATCAAAAT+CGG | - | chr3.1:40088747-40088766 | None:intergenic | 25.0% |
| ! | ATATATCTAACCTTAGTTGA+GGG | - | chr3.1:40087272-40087291 | None:intergenic | 25.0% |
| ! | CTAATGACTTAAGAAAAGTA+GGG | + | chr3.1:40087739-40087758 | MS.gene064390:CDS | 25.0% |
| ! | GAGGAATTTAAACTTCTAAT+TGG | + | chr3.1:40087180-40087199 | MS.gene064390:CDS | 25.0% |
| ! | TAATGACTTAAGAAAAGTAG+GGG | + | chr3.1:40087740-40087759 | MS.gene064390:CDS | 25.0% |
| ! | TACAATATTCGATGATATGA+TGG | + | chr3.1:40087446-40087465 | MS.gene064390:CDS | 25.0% |
| ! | TATATATCTAACCTTAGTTG+AGG | - | chr3.1:40087273-40087292 | None:intergenic | 25.0% |
| ! | TGAAGGATTTCAATTATTAC+TGG | + | chr3.1:40087121-40087140 | MS.gene064390:CDS | 25.0% |
| ! | TTTGGTTAAACTTTCTTCTA+TGG | + | chr3.1:40086546-40086565 | MS.gene064390:CDS | 25.0% |
| !! | AATTTGATTAGTTCGTTAGA+GGG | + | chr3.1:40085657-40085676 | MS.gene064390:CDS | 25.0% |
| !! | ATATGCGGATTTTGTAATAT+GGG | + | chr3.1:40087615-40087634 | MS.gene064390:CDS | 25.0% |
| !! | ATGTTTCCTTTTCTACATAA+AGG | - | chr3.1:40087102-40087121 | None:intergenic | 25.0% |
| !! | ATTTTCTATCTTTTGTCAAG+TGG | + | chr3.1:40087930-40087949 | MS.gene064390:CDS | 25.0% |
| !! | TGTTTCCTTTTCTACATAAA+GGG | - | chr3.1:40087101-40087120 | None:intergenic | 25.0% |
| !!! | ATAAGTGGTTTGTTTAAAGT+AGG | + | chr3.1:40086370-40086389 | MS.gene064390:intron | 25.0% |
| !!! | GTTTTTGAGAAACTAATTGA+AGG | + | chr3.1:40085714-40085733 | MS.gene064390:CDS | 25.0% |
| !!! | TGATATGATGGATAGAAATT+TGG | + | chr3.1:40087458-40087477 | MS.gene064390:CDS | 25.0% |
| AAGAAAGTTTAACCAAACCA+CGG | - | chr3.1:40086543-40086562 | None:intergenic | 30.0% | |
| AAGACTGAAACATCTAAACA+AGG | - | chr3.1:40087486-40087505 | None:intergenic | 30.0% | |
| AGTTTAAATTCCTCCAACTT+TGG | - | chr3.1:40087174-40087193 | None:intergenic | 30.0% | |
| ATGTAGAAAAGGAAACATGA+AGG | + | chr3.1:40087104-40087123 | MS.gene064390:CDS | 30.0% | |
| ATTTGGATATTGTGAGAAGA+AGG | + | chr3.1:40086067-40086086 | MS.gene064390:CDS | 30.0% | |
| CATGGAAAAGAATCTTAAGA+AGG | + | chr3.1:40088679-40088698 | MS.gene064390:CDS | 30.0% | |
| CTATTACCAGCTATTATACT+AGG | - | chr3.1:40086137-40086156 | None:intergenic | 30.0% | |
| CTTACAACCATGATTTCAAA+GGG | + | chr3.1:40088083-40088102 | MS.gene064390:CDS | 30.0% | |
| GACCAATGTATATCAAAATC+GGG | - | chr3.1:40088746-40088765 | None:intergenic | 30.0% | |
| GCATTATAAGTACATAAACG+CGG | - | chr3.1:40086346-40086365 | None:intergenic | 30.0% | |
| GCTAATGACTTAAGAAAAGT+AGG | + | chr3.1:40087738-40087757 | MS.gene064390:CDS | 30.0% | |
| GCTACAAAACTGTTTATTCT+TGG | + | chr3.1:40087359-40087378 | MS.gene064390:CDS | 30.0% | |
| GTAACCTATGGGATATTAAT+TGG | + | chr3.1:40086247-40086266 | MS.gene064390:intron | 30.0% | |
| GTTTGATAAAGTGAAAAGTC+TGG | + | chr3.1:40086501-40086520 | MS.gene064390:CDS | 30.0% | |
| TCTTACAACCATGATTTCAA+AGG | + | chr3.1:40088082-40088101 | MS.gene064390:CDS | 30.0% | |
| TGAGTTTGGAAGATTAAAGA+AGG | + | chr3.1:40088364-40088383 | MS.gene064390:CDS | 30.0% | |
| TGTAAGATAATGCAAAGAAC+TGG | - | chr3.1:40088069-40088088 | None:intergenic | 30.0% | |
| TTATTACCTTCCTTAAGCTT+CGG | - | chr3.1:40088124-40088143 | None:intergenic | 30.0% | |
| TTCATCCCTTTATGTAGAAA+AGG | + | chr3.1:40087093-40087112 | MS.gene064390:CDS | 30.0% | |
| ! | AAACTAATTGAAGGGTATGT+TGG | + | chr3.1:40085723-40085742 | MS.gene064390:CDS | 30.0% |
| ! | AATGGGAAATGGACTTTATT+TGG | + | chr3.1:40086675-40086694 | MS.gene064390:CDS | 30.0% |
| ! | AGTTATGATTTTCTCATTCG+TGG | + | chr3.1:40088440-40088459 | MS.gene064390:CDS | 30.0% |
| ! | ATTAAGCGTTTTTGTGAGTT+TGG | + | chr3.1:40088350-40088369 | MS.gene064390:CDS | 30.0% |
| ! | CTTTTCTTAAGTCATTAGCT+TGG | - | chr3.1:40087737-40087756 | None:intergenic | 30.0% |
| ! | GAATTTGATTAGTTCGTTAG+AGG | + | chr3.1:40085656-40085675 | MS.gene064390:CDS | 30.0% |
| ! | GATATGCGGATTTTGTAATA+TGG | + | chr3.1:40087614-40087633 | MS.gene064390:CDS | 30.0% |
| ! | GTACAATACATTTTTCTCGT+CGG | - | chr3.1:40088641-40088660 | None:intergenic | 30.0% |
| ! | GTTTTTGATGAAATGGCATT+TGG | + | chr3.1:40086050-40086069 | MS.gene064390:CDS | 30.0% |
| ! | TATGCGGATTTTGTAATATG+GGG | + | chr3.1:40087616-40087635 | MS.gene064390:CDS | 30.0% |
| ! | TTTTATCATACCCTCAACTA+AGG | + | chr3.1:40087259-40087278 | MS.gene064390:CDS | 30.0% |
| !! | TAGCTTGGTTTTTGATGAAA+TGG | + | chr3.1:40086043-40086062 | MS.gene064390:CDS | 30.0% |
| !!! | AAAAGCTGTTTTTGTGTATG+AGG | + | chr3.1:40085761-40085780 | MS.gene064390:CDS | 30.0% |
| !!! | AAAGCTGTTTTTGTGTATGA+GGG | + | chr3.1:40085762-40085781 | MS.gene064390:CDS | 30.0% |
| !!! | AGAATGTTTTTTGTACAGGA+TGG | + | chr3.1:40088283-40088302 | MS.gene064390:CDS | 30.0% |
| !!! | ATGCAGAATGTTTTTTGTAC+AGG | + | chr3.1:40088279-40088298 | MS.gene064390:CDS | 30.0% |
| !!! | CCAAAACCAATGCATTTTTT+AGG | - | chr3.1:40086804-40086823 | None:intergenic | 30.0% |
| !!! | CCTAAAAAATGCATTGGTTT+TGG | + | chr3.1:40086801-40086820 | MS.gene064390:CDS | 30.0% |
| AAAATTGTGTTCGACGAAGT+TGG | + | chr3.1:40087999-40088018 | MS.gene064390:CDS | 35.0% | |
| AACCCTGAATTTGGTTATAC+AGG | + | chr3.1:40086972-40086991 | MS.gene064390:CDS | 35.0% | |
| AAGAAATGGGATATAGAGGA+TGG | + | chr3.1:40088192-40088211 | MS.gene064390:CDS | 35.0% | |
| AATGTATATCAAAATCGGGC+TGG | - | chr3.1:40088742-40088761 | None:intergenic | 35.0% | |
| ACATAAAGGGATGAATAACG+AGG | - | chr3.1:40087088-40087107 | None:intergenic | 35.0% | |
| ACTGAGCTTAAAGAACCTTA+TGG | + | chr3.1:40087863-40087882 | MS.gene064390:CDS | 35.0% | |
| AGGAATGTTAGAGAATGCTA+AGG | + | chr3.1:40086390-40086409 | MS.gene064390:intron | 35.0% | |
| AGTCAAGAAATGGGATATAG+AGG | + | chr3.1:40088188-40088207 | MS.gene064390:CDS | 35.0% | |
| ATAAGTAGTCTGTGTGATGT+CGG | + | chr3.1:40088140-40088159 | MS.gene064390:CDS | 35.0% | |
| ATGCCATCAGAAAATGCTTT+CGG | + | chr3.1:40087209-40087228 | MS.gene064390:CDS | 35.0% | |
| ATGCCTGTATAACCAAATTC+AGG | - | chr3.1:40086978-40086997 | None:intergenic | 35.0% | |
| ATTCTGTGCACAAAATGAGT+TGG | + | chr3.1:40088463-40088482 | MS.gene064390:CDS | 35.0% | |
| CCAACCAATTAATATCCCAT+AGG | - | chr3.1:40086254-40086273 | None:intergenic | 35.0% | |
| CCTATGGGATATTAATTGGT+TGG | + | chr3.1:40086251-40086270 | MS.gene064390:intron | 35.0% | |
| CTTGATGAGATGATTGATAG+AGG | + | chr3.1:40086418-40086437 | MS.gene064390:CDS | 35.0% | |
| CTTTGTAACCTGCTTATTCA+GGG | + | chr3.1:40087705-40087724 | MS.gene064390:CDS | 35.0% | |
| GAAAAACTACGAGTTTACTC+AGG | + | chr3.1:40086016-40086035 | MS.gene064390:CDS | 35.0% | |
| GAAGGAGATACTAAGTGAAA+TGG | + | chr3.1:40087968-40087987 | MS.gene064390:CDS | 35.0% | |
| GCAAAAGCTATGTGTAGAAA+GGG | + | chr3.1:40086174-40086193 | MS.gene064390:intron | 35.0% | |
| GGAGTTTCGTTTAATGCAAT+TGG | + | chr3.1:40085684-40085703 | MS.gene064390:CDS | 35.0% | |
| GGTCAAAACTATCTTGTCTA+CGG | + | chr3.1:40088020-40088039 | MS.gene064390:CDS | 35.0% | |
| GTGGAATTGAGTCAAGAAAT+GGG | + | chr3.1:40088179-40088198 | MS.gene064390:CDS | 35.0% | |
| GTTAATCCCTCAATTGTGTA+AGG | + | chr3.1:40087506-40087525 | MS.gene064390:CDS | 35.0% | |
| GTTTCAATCTCACACTCAAA+GGG | - | chr3.1:40086612-40086631 | None:intergenic | 35.0% | |
| TAAATGGTTACCAAAGTTGG+AGG | + | chr3.1:40087161-40087180 | MS.gene064390:CDS | 35.0% | |
| TATGAGCCTTACACAATTGA+GGG | - | chr3.1:40087515-40087534 | None:intergenic | 35.0% | |
| TATGCTCCTAGTATAATAGC+TGG | + | chr3.1:40086128-40086147 | MS.gene064390:CDS | 35.0% | |
| TCACATCCAAACAAGAATTG+TGG | + | chr3.1:40088226-40088245 | MS.gene064390:CDS | 35.0% | |
| TGCAAAAGCTATGTGTAGAA+AGG | + | chr3.1:40086173-40086192 | MS.gene064390:intron | 35.0% | |
| TGCCTGTATAACCAAATTCA+GGG | - | chr3.1:40086977-40086996 | None:intergenic | 35.0% | |
| TGGTTGAAGAAATGCTTTGT+TGG | + | chr3.1:40086821-40086840 | MS.gene064390:CDS | 35.0% | |
| TGTGGAATTGAGTCAAGAAA+TGG | + | chr3.1:40088178-40088197 | MS.gene064390:CDS | 35.0% | |
| TGTTGCGATAAGAAAGAGTT+GGG | + | chr3.1:40087773-40087792 | MS.gene064390:CDS | 35.0% | |
| TTATCTAAACTTAGCCCTTC+CGG | - | chr3.1:40087681-40087700 | None:intergenic | 35.0% | |
| TTCTTTAAGCTCAGTGCAAA+CGG | - | chr3.1:40087858-40087877 | None:intergenic | 35.0% | |
| TTCTTTGACGAAATGGGAAA+TGG | + | chr3.1:40086664-40086683 | MS.gene064390:CDS | 35.0% | |
| TTGACAGATGAACTGAAGTT+CGG | - | chr3.1:40086760-40086779 | None:intergenic | 35.0% | |
| TTGTGATGAGATGAGAAATG+TGG | + | chr3.1:40085917-40085936 | MS.gene064390:CDS | 35.0% | |
| ! | ACCTGATGTTTCGACTTTTA+GGG | + | chr3.1:40086447-40086466 | MS.gene064390:CDS | 35.0% |
| ! | ATCTTTTGTCAAGTGGATAC+CGG | + | chr3.1:40087937-40087956 | MS.gene064390:CDS | 35.0% |
| ! | CATGTCAGTGATCAAACTTT+TGG | + | chr3.1:40086912-40086931 | MS.gene064390:CDS | 35.0% |
| ! | GGTTGAAGAAATGCTTTGTT+GGG | + | chr3.1:40086822-40086841 | MS.gene064390:CDS | 35.0% |
| ! | GTTGAAGAAATGCTTTGTTG+GGG | + | chr3.1:40086823-40086842 | MS.gene064390:CDS | 35.0% |
| ! | TGCATTTTCCACAAAACCAT+GGG | - | chr3.1:40088264-40088283 | None:intergenic | 35.0% |
| ! | TTAAGTCATTAGCTTGGCAA+TGG | - | chr3.1:40087731-40087750 | None:intergenic | 35.0% |
| ! | TTGAAGGAACTAGAAAGTGT+AGG | + | chr3.1:40086208-40086227 | MS.gene064390:intron | 35.0% |
| ! | TTTTGTGTATGAGGGAATGA+AGG | + | chr3.1:40085770-40085789 | MS.gene064390:CDS | 35.0% |
| !! | AGATACTGATAATGGCAACA+AGG | + | chr3.1:40088799-40088818 | MS.gene064390:CDS | 35.0% |
| !! | AGCCCGATTTTGATATACAT+TGG | + | chr3.1:40088741-40088760 | MS.gene064390:CDS | 35.0% |
| !! | ATGGTTTTGCTTTGTATCGA+TGG | + | chr3.1:40085948-40085967 | MS.gene064390:CDS | 35.0% |
| !! | CAGGGTATTGTAATTCTAGA+CGG | + | chr3.1:40086479-40086498 | MS.gene064390:CDS | 35.0% |
| !! | CTAAAACTGGCTTTCTTCAA+AGG | + | chr3.1:40088843-40088862 | MS.gene064390:CDS | 35.0% |
| !! | CTAGAAGTACTTTCTGCTAA+GGG | + | chr3.1:40087303-40087322 | MS.gene064390:CDS | 35.0% |
| !! | GATACTGATAATGGCAACAA+GGG | + | chr3.1:40088800-40088819 | MS.gene064390:CDS | 35.0% |
| !! | GTATGTTGGTGTTAAGGAAT+TGG | + | chr3.1:40085737-40085756 | MS.gene064390:CDS | 35.0% |
| !! | TCAAGGCTTCTTTCTAAAAC+TGG | + | chr3.1:40088830-40088849 | MS.gene064390:CDS | 35.0% |
| !! | TCTAGAAGTACTTTCTGCTA+AGG | + | chr3.1:40087302-40087321 | MS.gene064390:CDS | 35.0% |
| !! | TGGTTTTGCTTTGTATCGAT+GGG | + | chr3.1:40085949-40085968 | MS.gene064390:CDS | 35.0% |
| !! | TTTGAGTCCCTTTGAAATCA+TGG | - | chr3.1:40088093-40088112 | None:intergenic | 35.0% |
| !!! | AAGGGCAAGTTTGTTTTTGA+AGG | + | chr3.1:40086192-40086211 | MS.gene064390:intron | 35.0% |
| !!! | ACTTTTAGGGTTCTTATAGC+AGG | + | chr3.1:40086460-40086479 | MS.gene064390:CDS | 35.0% |
| !!! | CTTTTAGGGTTCTTATAGCA+GGG | + | chr3.1:40086461-40086480 | MS.gene064390:CDS | 35.0% |
| !!! | GCAACAAGGGTTTTTTATCA+AGG | + | chr3.1:40088813-40088832 | MS.gene064390:CDS | 35.0% |
| !!! | TCAAAGGCGTTTCAGATTTT+GGG | + | chr3.1:40086580-40086599 | MS.gene064390:CDS | 35.0% |
| !!! | TTCAAAGGCGTTTCAGATTT+TGG | + | chr3.1:40086579-40086598 | MS.gene064390:CDS | 35.0% |
| ACAAGCAGAACAATTCCTAG+TGG | + | chr3.1:40088592-40088611 | MS.gene064390:CDS | 40.0% | |
| ACCCTAAAAGTCGAAACATC+AGG | - | chr3.1:40086451-40086470 | None:intergenic | 40.0% | |
| ACTCGTTGAAATCGGAATGT+TGG | - | chr3.1:40088423-40088442 | None:intergenic | 40.0% | |
| AGCAGAGTTCTTTGACGAAA+TGG | + | chr3.1:40086657-40086676 | MS.gene064390:CDS | 40.0% | |
| AGGAAGCAAGAAGCTTGATT+CGG | + | chr3.1:40085979-40085998 | MS.gene064390:CDS | 40.0% | |
| ATACAGGCATACAGCAAGAA+GGG | + | chr3.1:40086988-40087007 | MS.gene064390:CDS | 40.0% | |
| ATCCCATAGGTTACTTCATC+AGG | - | chr3.1:40086241-40086260 | None:intergenic | 40.0% | |
| ATGAGGGAATGAAGGAAAGA+GGG | + | chr3.1:40085778-40085797 | MS.gene064390:CDS | 40.0% | |
| ATTAGTTCGTTAGAGGGTCA+AGG | + | chr3.1:40085663-40085682 | MS.gene064390:CDS | 40.0% | |
| ATTGGTTGGAGTTGTCATGA+AGG | + | chr3.1:40086265-40086284 | MS.gene064390:intron | 40.0% | |
| CAAGTTCCTGTAACTTGAGA+GGG | - | chr3.1:40087805-40087824 | None:intergenic | 40.0% | |
| CGTTTCAATCTCACACTCAA+AGG | - | chr3.1:40086613-40086632 | None:intergenic | 40.0% | |
| CTACGGTTTCTTGCAATGTA+AGG | + | chr3.1:40088037-40088056 | MS.gene064390:CDS | 40.0% | |
| CTATGAGCCTTACACAATTG+AGG | - | chr3.1:40087516-40087535 | None:intergenic | 40.0% | |
| CTTACTAACATCGAGAGTTC+AGG | - | chr3.1:40086865-40086884 | None:intergenic | 40.0% | |
| CTTCAAGAATTGAAGCAACG+TGG | - | chr3.1:40086726-40086745 | None:intergenic | 40.0% | |
| GAGAAATGTGGAGGATGTTA+TGG | + | chr3.1:40085929-40085948 | MS.gene064390:CDS | 40.0% | |
| GCAGAGTTCTTTGACGAAAT+GGG | + | chr3.1:40086658-40086677 | MS.gene064390:CDS | 40.0% | |
| GCTTTGTAACCTGCTTATTC+AGG | + | chr3.1:40087704-40087723 | MS.gene064390:CDS | 40.0% | |
| GGCTTTCCACAATTCTTGTT+TGG | - | chr3.1:40088235-40088254 | None:intergenic | 40.0% | |
| GTCCTGATGAAGTAACCTAT+GGG | + | chr3.1:40086236-40086255 | MS.gene064390:intron | 40.0% | |
| GTGTTGCGATAAGAAAGAGT+TGG | + | chr3.1:40087772-40087791 | MS.gene064390:CDS | 40.0% | |
| GTTCAGGTAACAGCAATTCT+TGG | - | chr3.1:40086849-40086868 | None:intergenic | 40.0% | |
| GTTTACTCAGGTTAGTAGCT+TGG | + | chr3.1:40086028-40086047 | MS.gene064390:CDS | 40.0% | |
| TATACAGGCATACAGCAAGA+AGG | + | chr3.1:40086987-40087006 | MS.gene064390:CDS | 40.0% | |
| TATGAGGGAATGAAGGAAAG+AGG | + | chr3.1:40085777-40085796 | MS.gene064390:CDS | 40.0% | |
| TCTTTAAGCTCAGTGCAAAC+GGG | - | chr3.1:40087857-40087876 | None:intergenic | 40.0% | |
| TGAACTGAAGTTCGGTAACA+CGG | - | chr3.1:40086752-40086771 | None:intergenic | 40.0% | |
| TGATGAGATGAGAAATGTGG+AGG | + | chr3.1:40085920-40085939 | MS.gene064390:CDS | 40.0% | |
| TGTCCTGATGAAGTAACCTA+TGG | + | chr3.1:40086235-40086254 | MS.gene064390:intron | 40.0% | |
| TTCCTTCGAGGTTGTGTTAT+CGG | + | chr3.1:40085805-40085824 | MS.gene064390:CDS | 40.0% | |
| TTGGTTGGAGTTGTCATGAA+GGG | + | chr3.1:40086266-40086285 | MS.gene064390:intron | 40.0% | |
| ! | ATCTGAAACGCCTTTGAAAG+CGG | - | chr3.1:40086577-40086596 | None:intergenic | 40.0% |
| ! | CACCTGATGTTTCGACTTTT+AGG | + | chr3.1:40086446-40086465 | MS.gene064390:CDS | 40.0% |
| ! | CTGCATTTTCCACAAAACCA+TGG | - | chr3.1:40088265-40088284 | None:intergenic | 40.0% |
| ! | TCGGGTTTTGCTTGATTACT+TGG | + | chr3.1:40085824-40085843 | MS.gene064390:CDS | 40.0% |
| ! | TTGTATCGATGGGAAGATTC+AGG | + | chr3.1:40085959-40085978 | MS.gene064390:CDS | 40.0% |
| !! | AACTTTTGGAGAAAATGCCG+AGG | + | chr3.1:40086926-40086945 | MS.gene064390:CDS | 40.0% |
| !! | ATTTCGACTGTGTCGATTCT+TGG | - | chr3.1:40088536-40088555 | None:intergenic | 40.0% |
| !! | GCGTTTGATTTGGTCGATTT+GGG | + | chr3.1:40085882-40085901 | MS.gene064390:CDS | 40.0% |
| !! | TGAAGGGTATGTTGGTGTTA+AGG | + | chr3.1:40085731-40085750 | MS.gene064390:CDS | 40.0% |
| !! | TTTGATTTGGTCGATTTGGG+TGG | + | chr3.1:40085885-40085904 | MS.gene064390:CDS | 40.0% |
| !!! | CTTCCGAAAGCATTTTCTGA+TGG | - | chr3.1:40087215-40087234 | None:intergenic | 40.0% |
| ACAAGGGGCTTATGCAATGA+GGG | + | chr3.1:40087405-40087424 | MS.gene064390:CDS | 45.0% | |
| AGAAAAGTAGGGGAGCTACT+TGG | + | chr3.1:40087750-40087769 | MS.gene064390:CDS | 45.0% | |
| CCAAGTTCCTGTAACTTGAG+AGG | - | chr3.1:40087806-40087825 | None:intergenic | 45.0% | |
| CCACAAAACCATGGGAAAGA+AGG | - | chr3.1:40088256-40088275 | None:intergenic | 45.0% | |
| CCTCTCAAGTTACAGGAACT+TGG | + | chr3.1:40087803-40087822 | MS.gene064390:CDS | 45.0% | |
| CGATCACGAAACCCTGAATT+TGG | + | chr3.1:40086963-40086982 | MS.gene064390:CDS | 45.0% | |
| CTTTCTGCTAAGGGTCTTAC+TGG | + | chr3.1:40087312-40087331 | MS.gene064390:CDS | 45.0% | |
| GCATATCAACGCACGATGAA+CGG | - | chr3.1:40087601-40087620 | None:intergenic | 45.0% | |
| GGCTTTCTTCAAAGGAGATG+AGG | + | chr3.1:40088851-40088870 | MS.gene064390:CDS | 45.0% | |
| GTATCTCCTTCACATCCAAC+CGG | - | chr3.1:40087959-40087978 | None:intergenic | 45.0% | |
| GTGAACGTTGTGCAACCATA+AGG | - | chr3.1:40087881-40087900 | None:intergenic | 45.0% | |
| GTGCGATCGATGTGTATGAA+GGG | + | chr3.1:40087825-40087844 | MS.gene064390:CDS | 45.0% | |
| GTTTCGTGTGGCGTTTGATT+TGG | + | chr3.1:40085872-40085891 | MS.gene064390:CDS | 45.0% | |
| TACAAGGGGCTTATGCAATG+AGG | + | chr3.1:40087404-40087423 | MS.gene064390:CDS | 45.0% | |
| TATGGAGAGTCCGCTTTCAA+AGG | + | chr3.1:40086564-40086583 | MS.gene064390:CDS | 45.0% | |
| TCCTTCGAGGTTGTGTTATC+GGG | + | chr3.1:40085806-40085825 | MS.gene064390:CDS | 45.0% | |
| TGAACGGCATGGGAAAATGA+AGG | - | chr3.1:40087585-40087604 | None:intergenic | 45.0% | |
| TTCCTTAAGCTTCGGTCACT+CGG | - | chr3.1:40088116-40088135 | None:intergenic | 45.0% | |
| TTTGTCAAGTGGATACCGGT+TGG | + | chr3.1:40087941-40087960 | MS.gene064390:CDS | 45.0% | |
| ! | GAAAAGTCTGGTTTGCGAGA+TGG | + | chr3.1:40086513-40086532 | MS.gene064390:CDS | 45.0% |
| ! | GTTCATCGTGCGTTGATATG+CGG | + | chr3.1:40087600-40087619 | MS.gene064390:CDS | 45.0% |
| ! | TGTTTAGCTTCTGCGAACGT+GGG | + | chr3.1:40088561-40088580 | MS.gene064390:CDS | 45.0% |
| !! | AGCAAGAAGCTTGATTCGGA+AGG | + | chr3.1:40085983-40086002 | MS.gene064390:CDS | 45.0% |
| !! | CCTTCTTTCCCATGGTTTTG+TGG | + | chr3.1:40088253-40088272 | MS.gene064390:CDS | 45.0% |
| !! | GGCGTTTGATTTGGTCGATT+TGG | + | chr3.1:40085881-40085900 | MS.gene064390:CDS | 45.0% |
| AAAGAGGGATGGTTCCTTCG+AGG | + | chr3.1:40085793-40085812 | MS.gene064390:CDS | 50.0% | |
| AACCGAGTGACCGAAGCTTA+AGG | + | chr3.1:40088111-40088130 | MS.gene064390:CDS | 50.0% | |
| ACCCGATAACACAACCTCGA+AGG | - | chr3.1:40085810-40085829 | None:intergenic | 50.0% | |
| AGCTCTCCCTCTCAAGTTAC+AGG | + | chr3.1:40087796-40087815 | MS.gene064390:CDS | 50.0% | |
| AGTGCAGATTGCGTTTCGTG+TGG | + | chr3.1:40085860-40085879 | MS.gene064390:CDS | 50.0% | |
| CCTGTTCCGGGATATGTTAC+CGG | + | chr3.1:40087659-40087678 | MS.gene064390:CDS | 50.0% | |
| CGGCGAACTACAAAATGCTG+TGG | + | chr3.1:40088160-40088179 | MS.gene064390:CDS | 50.0% | |
| CGGTAACATATCCCGGAACA+GGG | - | chr3.1:40087661-40087680 | None:intergenic | 50.0% | |
| GAGTGACCGAAGCTTAAGGA+AGG | + | chr3.1:40088115-40088134 | MS.gene064390:CDS | 50.0% | |
| GGGAATGAAGGAAAGAGGGA+TGG | + | chr3.1:40085782-40085801 | MS.gene064390:CDS | 50.0% | |
| GGTGCGATCGATGTGTATGA+AGG | + | chr3.1:40087824-40087843 | MS.gene064390:CDS | 50.0% | |
| GTGCAAGCCATGCAGGAAAA+AGG | + | chr3.1:40088713-40088732 | MS.gene064390:CDS | 50.0% | |
| GTGGAAAGCCTTCTTTCCCA+TGG | + | chr3.1:40088245-40088264 | MS.gene064390:CDS | 50.0% | |
| TCCGGGATATGTTACCGGAA+GGG | + | chr3.1:40087664-40087683 | MS.gene064390:CDS | 50.0% | |
| TGAAAGCAGACTCCCTGTTC+CGG | + | chr3.1:40087646-40087665 | MS.gene064390:CDS | 50.0% | |
| TTCCGGGATATGTTACCGGA+AGG | + | chr3.1:40087663-40087682 | MS.gene064390:CDS | 50.0% | |
| ! | CTGGTAGCCTTTTTCCTGCA+TGG | - | chr3.1:40088723-40088742 | None:intergenic | 50.0% |
| ! | GTGTTTAGCTTCTGCGAACG+TGG | + | chr3.1:40088560-40088579 | MS.gene064390:CDS | 50.0% |
| ! | TGGATACCGGTTGGATGTGA+AGG | + | chr3.1:40087950-40087969 | MS.gene064390:CDS | 50.0% |
| ! | TTCCTAGTGGACATGATCCG+CGG | + | chr3.1:40088605-40088624 | MS.gene064390:CDS | 50.0% |
| AGAAAATGCCGAGGTCTGCC+CGG | + | chr3.1:40086935-40086954 | MS.gene064390:CDS | 55.0% | |
| AGATCTCGTGCAAGCCATGC+AGG | + | chr3.1:40088706-40088725 | MS.gene064390:CDS | 55.0% | |
| CAACGCACGATGAACGGCAT+GGG | - | chr3.1:40087595-40087614 | None:intergenic | 55.0% | |
| CCGGTAACATATCCCGGAAC+AGG | - | chr3.1:40087662-40087681 | None:intergenic | 55.0% | |
| CGAGATGGAGAACCGTGGTT+TGG | + | chr3.1:40086528-40086547 | MS.gene064390:CDS | 55.0% | |
| GAAAGCAGACTCCCTGTTCC+GGG | + | chr3.1:40087647-40087666 | MS.gene064390:CDS | 55.0% | |
| GCCCTTCCGGTAACATATCC+CGG | - | chr3.1:40087668-40087687 | None:intergenic | 55.0% | |
| GGCAATGGCCCTGAATAAGC+AGG | - | chr3.1:40087716-40087735 | None:intergenic | 55.0% | |
| GGGTTTCGTGATCGAGTTCC+CGG | - | chr3.1:40086957-40086976 | None:intergenic | 55.0% | |
| GGTTTCGTGATCGAGTTCCC+GGG | - | chr3.1:40086956-40086975 | None:intergenic | 55.0% | |
| GTTTGCGAGATGGAGAACCG+TGG | + | chr3.1:40086523-40086542 | MS.gene064390:CDS | 55.0% | |
| TCAACGCACGATGAACGGCA+TGG | - | chr3.1:40087596-40087615 | None:intergenic | 55.0% | |
| TTAGCTTCTGCGAACGTGGG+AGG | + | chr3.1:40088564-40088583 | MS.gene064390:CDS | 55.0% | |
| CTCCGCGGATCATGTCCACT+AGG | - | chr3.1:40088610-40088629 | None:intergenic | 60.0% | |
| GAAAATGCCGAGGTCTGCCC+GGG | + | chr3.1:40086936-40086955 | MS.gene064390:CDS | 60.0% | |
| ! | CTAGTGGACATGATCCGCGG+AGG | + | chr3.1:40088608-40088627 | MS.gene064390:CDS | 60.0% |
| TCGAGTTCCCGGGCAGACCT+CGG | - | chr3.1:40086946-40086965 | None:intergenic | 65.0% | |
| TCGTCGGCGTTTCGCCTCCG+CGG | - | chr3.1:40088625-40088644 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40085647 | 40088871 | 40085647 | ID=MS.gene064390 |
| chr3.1 | mRNA | 40085647 | 40088871 | 40085647 | ID=MS.gene064390.t1;Parent=MS.gene064390 |
| chr3.1 | exon | 40085647 | 40086149 | 40085647 | ID=MS.gene064390.t1.exon1;Parent=MS.gene064390.t1 |
| chr3.1 | CDS | 40085647 | 40086149 | 40085647 | ID=cds.MS.gene064390.t1;Parent=MS.gene064390.t1 |
| chr3.1 | exon | 40086392 | 40088871 | 40086392 | ID=MS.gene064390.t1.exon2;Parent=MS.gene064390.t1 |
| chr3.1 | CDS | 40086392 | 40088871 | 40086392 | ID=cds.MS.gene064390.t1;Parent=MS.gene064390.t1 |
| Gene Sequence |
| Protein sequence |
