AlfalfaGEDB | MS.gene064743

M. sativa cultivar XinJiangDaYe / MS.gene064743

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF04561.17 PF04563.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064743.t1	RHN42280.1	70	313	29	3	1	248	129	441	1.90E-113	418.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064743.t1	Q9LK40	43.8	317	108	4	2	248	117	433	7.9e-68	258.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064743.t1	A0A072THJ1	70.0	313	29	3	1	248	129	441	1.4e-113	418.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050807	MS.gene064743	0.809331	1.99E-50	-1.69E-46
MS.gene052665	MS.gene064743	0.803976	2.70E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064743.t1	MTR_3g105990	67.093	313	38	4	1	248	131	443	1.32e-132	402
MS.gene064743.t1	MTR_0189s0050	55.873	315	70	7	1	248	129	441	2.55e-100	301

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064743.t1	AT3G18090	54.217	166	69	3	87	248	153	315	1.47e-55	191
MS.gene064743.t1	AT3G18090	50.000	96	43	1	6	96	3	98	1.00e-23	100
MS.gene064743.t1	AT3G18090	54.217	166	69	3	87	248	153	315	2.19e-55	191
MS.gene064743.t1	AT3G18090	50.000	96	43	1	6	96	3	98	1.18e-23	99.8
MS.gene064743.t1	AT3G18090	54.217	166	69	3	87	248	153	315	2.93e-55	191
MS.gene064743.t1	AT3G18090	50.000	96	43	1	6	96	3	98	1.16e-23	100
MS.gene064743.t1	AT3G23780	53.012	166	71	3	87	248	271	433	9.70e-54	186
MS.gene064743.t1	AT3G23780	53.465	101	42	1	1	96	116	216	2.09e-27	110
MS.gene064743.t1	AT3G23780	53.012	166	71	3	87	248	271	433	9.70e-54	186
MS.gene064743.t1	AT3G23780	53.465	101	42	1	1	96	116	216	2.09e-27	110

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Find 50 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTCAATCTCCATAG+AGG	0.600669	3.4:+97751990	None:intergenic
AAATGTGATACATTTCGTAG+GGG	0.709049	3.4:-97752316	MS.gene064743:CDS
AACAATCTCTTTATCTGAAG+TGG	0.475073	3.4:+97752411	None:intergenic
AAGTGCACTTTGCACATGCT+CGG	0.551400	3.4:-97752042	MS.gene064743:CDS
AATAAGAGGCTTGAGTTGAC+TGG	0.485554	3.4:-97752088	MS.gene064743:CDS
ACAAATGTGATACATTTCGT+AGG	0.596270	3.4:-97752318	MS.gene064743:CDS
ACATTTGTCGGCTTCACGAA+TGG	0.519230	3.4:+97752333	None:intergenic
ACGAAATGTATCACATTTGT+CGG	0.440086	3.4:+97752321	None:intergenic
AGAAGAGAGAAATAACTATT+GGG	0.437663	3.4:-97753166	MS.gene064743:CDS
AGACCTGACTTGACCATAAC+AGG	0.387165	3.4:+97753137	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGATACATTTCGTAG+GGG	-	chr3.4:97753286-97753305	MS.gene064743:intron	30.0%
AACAAAATTTATGCAGGGAA+CGG	+	chr3.4:97752681-97752700	None:intergenic	30.0%
AACAATCTCTTTATCTGAAG+TGG	+	chr3.4:97753194-97753213	None:intergenic	30.0%
ACAAATGTGATACATTTCGT+AGG	-	chr3.4:97753284-97753303	MS.gene064743:intron	30.0%
ACGAAATGTATCACATTTGT+CGG	+	chr3.4:97753284-97753303	None:intergenic	30.0%
CAAATGTGATACATTTCGTA+GGG	-	chr3.4:97753285-97753304	MS.gene064743:intron	30.0%
CACTGAATTAAAATGTAGAC+TGG	+	chr3.4:97752850-97752869	None:intergenic	30.0%
GAGAAGAGAGAAATAACTAT+TGG	-	chr3.4:97752435-97752454	MS.gene064743:CDS	30.0%
GAGATATAGATAAACACGTA+TGG	-	chr3.4:97752285-97752304	MS.gene064743:CDS	30.0%
GCATAAAATAGTATCCATAC+CGG	+	chr3.4:97753172-97753191	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	97751997	97753627	97751997	ID=MS.gene064743
chr3.4	mRNA	97751997	97753627	97751997	ID=MS.gene064743.t1;Parent=MS.gene064743
chr3.4	exon	97753556	97753627	97753556	ID=MS.gene064743.t1.exon1;Parent=MS.gene064743.t1
chr3.4	CDS	97753556	97753627	97753556	ID=cds.MS.gene064743.t1;Parent=MS.gene064743.t1
chr3.4	exon	97753058	97753270	97753058	ID=MS.gene064743.t1.exon2;Parent=MS.gene064743.t1
chr3.4	CDS	97753058	97753270	97753058	ID=cds.MS.gene064743.t1;Parent=MS.gene064743.t1
chr3.4	exon	97751997	97752458	97751997	ID=MS.gene064743.t1.exon3;Parent=MS.gene064743.t1
chr3.4	CDS	97751997	97752458	97751997	ID=cds.MS.gene064743.t1;Parent=MS.gene064743.t1

Gene Sequence

>MS.gene064743

ATGCTTCCTAGACATGCTCGTCTTCAGAGAATGACTTATGCTTCCAAAATCAAAACTGATGTTCAAGTTCAGGTTAGAAATTTTGAATCATTTCTTAAAGTTTTCATATTTCTATGTGGGTTAGTATTCATAATAAATTAAGGTGTTGTTGTGATTTTGTTAAGAGTTACTATTTTTAATGCTTTGAAATTTGTGATATCTGTTTGTTGTTTTTGTGTTAATGAGAAATGCATTGTTTTATTGTGTATTTTTGAAATGTGGCCAAGTTGCAGAAGTAAAAAAGTAAGAGAGATATAGATAAACACGTATGGTGTCTTTGATGTTCGGATAACACAACTGTGTGTGTGTTAATTTCAGGTACATATTCCGAAGAAAGTTCGGAGTGATAAATTCAAGACAGGAAAAGAGGAGTATATTGATAGAGAGATAATCATGAATGAGAAGAGAGAAATAACTATTGGGAGACTGCCTGTTATGGTCAAGTCAGGTCTCTGCTGGATGAGTGATGTTGAAAAAAGTGATTGTGAATTTGACCATGGAGGCTACTTTCTGATCAAGGGTGCTGAGAAGGTTAGCTATAATTATGATTTCTTTATTTACTTACATGAATTTCTGTCTTGTTTGCTACATATTTTATACATCTTATGGTTGCATATATTTTTAGTCCTATACAATTCACAGCCGTTCCCTGCATAAATTTTGTTAAACTTTAGTCCCTATTTTGCATTAGGAACTAAAAGTACTCATTTTTTGTATGAAGTTTTCAAAATACAGACTAAATTTGAGTAAAATTTATCCACGGATTAAACTTACAAAATCCTATTTTTATAGGGATTAAAAACATGCGTCTCCAGTCTACATTTTAATTCAGTGCATTAATGTTGTATTTATATTATTGTGCTTTGTTTTTGTATGTCTATATTATTATTATTATATCTTCACAATGTCTTTCTTTGCTCCTGTTTGTAAATTGCTTTTGTTGCAGATTTTTATTGCACAAGAGCAAATATTTCTGAAGAGGCTTTGGGTTTCAAATATTCCGTATTGGACAGTTGCATACAAGTGACAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTGGAGAATTCCAGCATTGAAGGAATTAAAAATGAAGAGAAGTTGCTCACGGTTTTTTTTGTCTGTTGAGATTCCGGTATGGATACTATTTTATGCCACTTCAGATAAAGAGATTGTTGATCTCATCGATTATGGAGAGGGAGATGGAAGAATTCATAACATTCTCTTTGCATCCATTCGTGAAGCCGACAAATGTGATACATTTCGTAGGGGAAAGAATGCTGTTCTTTTCTTAGAGGAACGTGTCAAGGGTGTTCAATATCCGCCCTCAGAATCTATTGACGAGTGCCTTAACTTGTATGTCTTTCCGAACATTAAGGGATTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAGGTTCTCTTACTGGCTTATACTGGACGCCAAAAAACGGATAACAGGGATGACTTTCAAAATAAGAGGCTTGAGTTGACTGGTGAGCTGCGCGAGCACGAGATCAAAGTGCACTTTGCACATGCTCGGAAGCGAATGTGGAAGGCTCTGCAAAGAGACCTCTATGGAGATTGA

Protein sequence

>MS.gene064743.t1

MLPRHARLQRMTYASKIKTDVQVQVHIPKKVRSDKFKTGKEEYIDREIIMNEKREITIGRLPVMVKSGLCWMSDVEKSDCEFDHGGYFLIKGAEKIPVWILFYATSDKEIVDLIDYGEGDGRIHNILFASIREADKCDTFRRGKNAVLFLEERVKGVQYPPSESIDECLNLYVFPNIKGLKRKARYLAYMVKVLLLAYTGRQKTDNRDDFQNKRLELTGELREHEIKVHFAHARKRMWKALQRDLYGD