AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064877.t1 MTR_3g116130 98.929 280 3 0 1 280 1 280 0.0 555
MS.gene064877.t1 MTR_3g116130 98.932 281 3 0 1 281 1 281 0.0 550
MS.gene064877.t1 MTR_8g024520 56.000 200 72 9 23 214 19 210 9.20e-57 184
MS.gene064877.t1 MTR_8g024520 56.000 200 72 9 23 214 19 210 9.74e-57 184
MS.gene064877.t1 MTR_5g064120 85.882 85 12 0 21 105 8 92 5.01e-49 164
MS.gene064877.t1 MTR_4g035310 78.947 95 20 0 19 113 6 100 6.51e-49 163
MS.gene064877.t1 MTR_4g035310 78.947 95 20 0 19 113 6 100 8.96e-49 163
MS.gene064877.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 2.56e-43 146
MS.gene064877.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 6.56e-42 144
MS.gene064877.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 7.11e-42 144
MS.gene064877.t1 MTR_7g117495 67.778 90 29 0 21 110 10 99 1.69e-40 141
MS.gene064877.t1 MTR_7g117495 67.778 90 29 0 21 110 10 99 1.88e-40 141
MS.gene064877.t1 MTR_2g026180 38.261 115 50 3 30 129 5 113 4.82e-20 89.7
MS.gene064877.t1 MTR_4g088010 53.012 83 39 0 25 107 72 154 6.20e-20 88.6
MS.gene064877.t1 MTR_4g088010 30.282 142 82 5 24 150 158 297 2.66e-11 63.5
MS.gene064877.t1 MTR_8g463890 46.988 83 44 0 25 107 69 151 2.39e-18 84.7
MS.gene064877.t1 MTR_7g088140 44.048 84 47 0 24 107 122 205 9.12e-18 83.2
MS.gene064877.t1 MTR_7g088140 44.048 84 47 0 24 107 122 205 1.61e-17 82.4
MS.gene064877.t1 MTR_3g055990 42.667 75 42 1 30 104 7 80 2.28e-17 82.0
MS.gene064877.t1 MTR_3g055990 42.667 75 42 1 30 104 7 80 2.53e-17 82.0
MS.gene064877.t1 MTR_5g088220 40.964 83 49 0 25 107 161 243 8.45e-17 80.5
MS.gene064877.t1 MTR_1g073690 40.000 80 47 1 25 104 2 80 1.86e-16 79.3
MS.gene064877.t1 MTR_1g073690 37.037 81 51 0 24 104 107 187 3.94e-11 63.5
MS.gene064877.t1 MTR_4g070190 44.737 76 41 1 30 104 9 84 7.88e-16 73.6
MS.gene064877.t1 MTR_3g080130 36.190 105 65 2 11 114 18 121 2.94e-15 71.2
MS.gene064877.t1 MTR_5g097580 41.333 75 43 1 30 104 7 80 4.70e-15 75.1
MS.gene064877.t1 MTR_5g097580 30.508 177 94 5 30 178 107 282 2.38e-11 64.3
MS.gene064877.t1 MTR_4g070140 44.737 76 41 1 30 104 9 84 5.58e-15 72.0
MS.gene064877.t1 MTR_5g097580 41.333 75 43 1 30 104 7 80 5.92e-15 74.7
MS.gene064877.t1 MTR_5g097580 30.508 177 94 5 30 178 107 282 3.02e-11 63.9
MS.gene064877.t1 MTR_4g070080 40.964 83 47 2 23 104 1 82 1.84e-14 68.9
MS.gene064877.t1 MTR_4g070080 40.964 83 47 2 23 104 1 82 4.26e-14 68.9
MS.gene064877.t1 MTR_3g084040 42.029 69 40 0 29 97 36 104 4.62e-14 68.6
MS.gene064877.t1 MTR_7g013730 40.244 82 47 2 30 110 41 121 4.64e-14 70.5
MS.gene064877.t1 MTR_3g025880 40.594 101 57 3 11 110 27 125 4.73e-14 72.0
MS.gene064877.t1 MTR_3g084040 42.424 66 38 0 29 94 36 101 5.55e-14 67.0
MS.gene064877.t1 MTR_4g109540 40.964 83 47 2 29 110 42 123 6.80e-14 70.5
MS.gene064877.t1 MTR_4g063560 45.070 71 38 1 29 98 33 103 2.26e-13 65.5
MS.gene064877.t1 MTR_7g105260 38.462 91 53 2 30 117 33 123 9.05e-13 64.7
MS.gene064877.t1 MTR_7g013740 34.426 122 67 3 1 110 1 121 1.69e-12 64.3
MS.gene064877.t1 MTR_3g103420 35.000 80 51 1 25 104 6 84 1.12e-11 64.7
MS.gene064877.t1 MTR_4g109540 37.363 91 47 3 29 110 42 131 1.46e-11 63.9
MS.gene064877.t1 MTR_4g104470 38.393 112 57 4 30 140 123 223 2.09e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064877.t1 AT1G76460 69.203 276 72 6 14 279 9 281 2.28e-128 366
MS.gene064877.t1 AT1G20880 65.357 280 73 8 13 281 8 274 3.64e-113 327
MS.gene064877.t1 AT1G20880 65.357 280 73 8 13 281 8 274 3.64e-113 327
MS.gene064877.t1 AT1G20880 65.357 280 73 8 13 281 8 274 3.64e-113 327
MS.gene064877.t1 AT1G22330 59.873 157 55 4 21 176 9 158 3.54e-51 170
MS.gene064877.t1 AT1G33470 43.089 246 115 5 25 251 3 242 1.83e-50 166
MS.gene064877.t1 AT1G33470 43.320 247 114 6 25 251 3 243 2.06e-49 164
MS.gene064877.t1 AT1G33470 43.802 242 110 6 25 246 3 238 2.33e-49 164
MS.gene064877.t1 AT2G46780 52.356 191 79 6 20 199 13 202 1.81e-47 161
MS.gene064877.t1 AT2G46780 52.356 191 79 6 20 199 13 202 1.81e-47 161
MS.gene064877.t1 AT1G78260 81.176 85 16 0 21 105 9 93 2.62e-46 157
MS.gene064877.t1 AT1G22910 78.022 91 20 0 23 113 7 97 2.74e-46 155
MS.gene064877.t1 AT1G78260 81.176 85 16 0 21 105 9 93 3.96e-46 156
MS.gene064877.t1 AT1G22910 78.022 91 20 0 23 113 7 97 7.38e-46 155
MS.gene064877.t1 AT1G22910 78.022 91 20 0 23 113 7 97 1.49e-45 157
MS.gene064877.t1 AT3G54770 65.625 96 32 1 19 113 7 102 3.69e-38 135
MS.gene064877.t1 AT3G54770 65.625 96 32 1 19 113 7 102 4.59e-38 135
MS.gene064877.t1 AT5G11412 66.250 80 27 0 25 104 48 127 1.41e-34 123
MS.gene064877.t1 AT5G53680 55.000 80 36 0 25 104 9 88 2.00e-28 107
MS.gene064877.t1 AT3G06970 49.057 106 49 2 25 125 8 113 2.20e-26 105
MS.gene064877.t1 AT3G54770 55.556 90 25 2 45 128 1 81 6.67e-25 99.4
MS.gene064877.t1 AT5G53720 55.263 76 34 0 29 104 9 84 3.57e-24 94.0
MS.gene064877.t1 AT2G22090 46.988 83 44 0 25 107 100 182 6.73e-19 85.5
MS.gene064877.t1 AT2G22090 46.988 83 44 0 25 107 100 182 7.41e-19 85.5
MS.gene064877.t1 AT4G39260 46.053 76 40 1 30 104 7 82 1.74e-18 79.0
MS.gene064877.t1 AT4G39260 46.053 76 40 1 30 104 7 82 1.86e-18 79.7
MS.gene064877.t1 AT4G39260 46.053 76 40 1 30 104 7 82 5.27e-18 79.7
MS.gene064877.t1 AT3G15010 48.193 83 43 0 25 107 71 153 5.52e-18 83.6
MS.gene064877.t1 AT3G15010 33.333 102 68 0 12 113 150 251 1.74e-14 73.2
MS.gene064877.t1 AT3G15010 48.193 83 43 0 25 107 71 153 5.52e-18 83.6
MS.gene064877.t1 AT3G15010 33.333 102 68 0 12 113 150 251 1.74e-14 73.2
MS.gene064877.t1 AT4G26650 42.667 75 42 1 30 104 16 89 9.79e-18 83.2
MS.gene064877.t1 AT4G26650 42.667 75 42 1 30 104 13 86 1.03e-17 82.8
MS.gene064877.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.86e-17 82.0
MS.gene064877.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.86e-17 82.0
MS.gene064877.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.86e-17 82.0
MS.gene064877.t1 AT5G47620 46.377 69 36 1 29 97 6 73 2.10e-17 82.0
MS.gene064877.t1 AT4G39260 52.632 57 27 0 30 86 7 63 2.10e-17 76.3
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.05e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.27e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene064877.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.83e-16 79.3
MS.gene064877.t1 AT2G19380 39.048 105 62 1 1 105 382 484 2.03e-16 79.3
MS.gene064877.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.05e-16 79.3
MS.gene064877.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.05e-16 79.3
MS.gene064877.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.05e-16 79.3
MS.gene064877.t1 AT3G23830 39.326 89 52 2 29 116 35 122 2.63e-16 74.3
MS.gene064877.t1 AT3G23830 39.326 89 52 2 29 116 35 122 2.63e-16 74.3
MS.gene064877.t1 AT4G13850 45.833 72 35 1 29 100 35 102 2.80e-16 73.9
MS.gene064877.t1 AT2G22100 30.244 205 130 6 1 195 137 338 3.09e-16 78.2
MS.gene064877.t1 AT3G07810 41.333 75 43 1 30 104 7 80 3.87e-16 78.6
MS.gene064877.t1 AT3G07810 41.333 75 43 1 30 104 7 80 4.14e-16 78.6
MS.gene064877.t1 AT4G13850 45.833 72 35 1 29 100 35 102 4.28e-16 73.9
MS.gene064877.t1 AT4G13850 45.833 72 35 1 29 100 35 102 5.27e-16 73.9
MS.gene064877.t1 AT4G13850 45.833 72 35 1 29 100 35 102 5.90e-16 73.9
MS.gene064877.t1 AT2G21660 42.683 82 45 2 24 104 4 84 2.46e-15 72.4
MS.gene064877.t1 AT2G21660 42.683 82 45 2 24 104 4 84 3.52e-15 72.4
MS.gene064877.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.58e-15 75.1
MS.gene064877.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.58e-15 75.1
MS.gene064877.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.58e-15 75.1
MS.gene064877.t1 AT2G33410 33.913 115 63 2 30 132 7 120 1.26e-14 73.6
MS.gene064877.t1 AT4G14300 38.750 80 48 1 25 104 2 80 2.95e-14 72.8
MS.gene064877.t1 AT4G14300 38.750 80 48 1 25 104 2 80 2.95e-14 72.8
MS.gene064877.t1 AT5G61030 38.750 80 39 2 29 108 40 109 1.46e-12 67.0
MS.gene064877.t1 AT5G61030 38.750 80 39 2 29 108 40 109 1.46e-12 67.0
MS.gene064877.t1 AT3G26420 43.478 69 38 1 30 97 8 76 4.45e-12 65.1
MS.gene064877.t1 AT1G74230 37.179 78 49 0 29 106 34 111 4.46e-12 65.5
MS.gene064877.t1 AT1G18630 42.857 70 39 1 29 97 36 105 1.65e-11 61.6
MS.gene064877.t1 AT5G59865 48.980 49 25 0 29 77 26 74 3.16e-11 59.7
MS.gene064877.t1 AT1G22910 71.795 39 11 0 75 113 8 46 4.67e-11 61.2
MS.gene064877.t1 AT3G13224 32.877 73 48 1 30 102 20 91 5.52e-11 62.8
MS.gene064877.t1 AT5G04280 44.444 54 30 0 29 82 7 60 6.87e-11 62.0

Find 109 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGTTACTTTGAACAATT+TGG 0.153087 3.3:-94701349 MS.gene064877:CDS
AATACAACTATTTATCCTTA+TGG 0.237313 3.3:-94699804 MS.gene064877:CDS
GGAATGGTTTATCCTCCTTA+TGG 0.259852 3.3:-94700544 MS.gene064877:CDS
AGGACTGTACCGCTAGGATA+TGG 0.287341 3.3:+94699642 None:intergenic
CAATTGTTGAATTCTCCTTT+TGG 0.309482 3.3:-94701436 MS.gene064877:CDS
TATTTATCCTTATGGACAAT+TGG 0.319044 3.3:-94699796 MS.gene064877:CDS
ACCTGTGGGTATACGTATTC+AGG 0.345135 3.3:+94699980 None:intergenic
GGTGCCTACGTTGGAGGTTA+TGG 0.353929 3.3:-94700601 MS.gene064877:CDS
GTCCTGTTATTGATGGTAGA+AGG 0.354869 3.3:-94700888 MS.gene064877:CDS
CAACAGTACCTTCAGATATA+TGG 0.362755 3.3:-94699843 MS.gene064877:CDS
GAATGGTTTATCCTCCTTAT+GGG 0.365347 3.3:-94700543 MS.gene064877:intron
GGAATTGCTGCACCAGTTCC+AGG 0.368536 3.3:-94698564 MS.gene064877:CDS
CAGGATCAAGTTCGAGTTCT+GGG 0.370870 3.3:-94701462 MS.gene064877:CDS
GCATACCAGGGTCCAAGTTC+AGG 0.377967 3.3:-94701481 MS.gene064877:CDS
TCAGGATCAAGTTCGAGTTC+TGG 0.380866 3.3:-94701463 MS.gene064877:CDS
TACTGTTGTTGACCAGCATA+AGG 0.402296 3.3:+94699858 None:intergenic
CTCGAACTTGATCCTGAACT+TGG 0.405699 3.3:+94701469 None:intergenic
ACTTTCCTATGGCTATCAAC+AGG 0.406701 3.3:-94700566 MS.gene064877:CDS
GCCCTTCTACCATCAATAAC+AGG 0.411876 3.3:+94700886 None:intergenic
CAATTGGGTCAAGCTGTTCC+TGG 0.414666 3.3:-94699780 MS.gene064877:CDS
ATTTATCCTTATGGACAATT+GGG 0.419932 3.3:-94699795 MS.gene064877:CDS
GCTCACAAAACCGTAGCCTT+TGG 0.426083 3.3:+94701279 None:intergenic
ATAGCATACCATATGAGATT+GGG 0.427085 3.3:+94700824 None:intergenic
CAGGCTCTCCTAGCAGCCTC+TGG 0.436509 3.3:+94700922 None:intergenic
TAAAGTCTTCGTTGGTGGAT+TGG 0.444418 3.3:-94701398 MS.gene064877:CDS
AATAGCATACCATATGAGAT+TGG 0.458747 3.3:+94700823 None:intergenic
ACCGTAGCCTTTGGATCGTC+CGG 0.458930 3.3:+94701288 None:intergenic
CTACCATCAATAACAGGACT+TGG 0.459160 3.3:+94700892 None:intergenic
CCTCAACCATCTGTTTGGTC+AGG 0.464509 3.3:+94698495 None:intergenic
CGTCCCCTCAACCATCTGTT+TGG 0.471470 3.3:+94698490 None:intergenic
GCCCGTGGTGCCTACGTTGG+AGG 0.473342 3.3:-94700607 MS.gene064877:CDS
ACAATAAATTGTGGTTGGCC+TGG 0.475736 3.3:+94698546 None:intergenic
TCATGGTTATACAGCAATGC+AGG 0.476637 3.3:-94699754 MS.gene064877:CDS
GCTTGACCCAATTGTCCATA+AGG 0.479896 3.3:+94699789 None:intergenic
CATCAGATTGTGCCCTATGG+TGG 0.479906 3.3:-94699714 MS.gene064877:CDS
CTATGGCTATCAACAGGGAA+TGG 0.482459 3.3:-94700560 MS.gene064877:CDS
CAAGCTGTTCCTGGCGGTCA+TGG 0.484640 3.3:-94699771 MS.gene064877:CDS
GATCCAAGTCCTGTTATTGA+TGG 0.488968 3.3:-94700895 MS.gene064877:CDS
ACCTCCAACGTAGGCACCAC+GGG 0.492680 3.3:+94700606 None:intergenic
TATACTAAAGTCTTCGTTGG+TGG 0.503912 3.3:-94701403 MS.gene064877:CDS
GGACTGTACCGCTAGGATAT+GGG 0.505345 3.3:+94699643 None:intergenic
ACTTATACTAAAGTCTTCGT+TGG 0.505982 3.3:-94701406 MS.gene064877:CDS
TAGAAGGGCTAATTGTAACT+TGG 0.507997 3.3:-94700872 MS.gene064877:CDS
AATTGTGGTTGGCCTGGAAC+TGG 0.508286 3.3:+94698552 None:intergenic
CAGCATCCCACTCACCCATA+AGG 0.512059 3.3:+94700529 None:intergenic
TACCAACAACCACTTTCCTA+TGG 0.512893 3.3:-94700577 MS.gene064877:CDS
ACTGTTGTTGACCAGCATAA+GGG 0.516296 3.3:+94699859 None:intergenic
CTTCAGATATATGGTGTGCC+TGG 0.520918 3.3:-94699834 MS.gene064877:CDS
GGTTGCAAACTTCCAACATA+AGG 0.521111 3.3:+94700631 None:intergenic
ATTAACATTGGACCCACCAT+AGG 0.522838 3.3:+94699701 None:intergenic
AATTGTAACTTGGCTTCGCA+TGG 0.524644 3.3:-94700862 MS.gene064877:CDS
CCAACGTAGGCACCACGGGC+TGG 0.528290 3.3:+94700610 None:intergenic
AGTTGTTATTGCATTAACAT+TGG 0.528485 3.3:+94699689 None:intergenic
GGTCATCAGATTGTGCCCTA+TGG 0.532673 3.3:-94699717 MS.gene064877:CDS
TCTTCGTTGGTGGATTGGCA+TGG 0.533106 3.3:-94701393 MS.gene064877:CDS
CTCCAAATTGTTCAAAGTAA+CGG 0.539239 3.3:+94701347 None:intergenic
CTTCGTTGGTGGATTGGCAT+GGG 0.539784 3.3:-94701392 MS.gene064877:CDS
GCTGTATAACCATGACCGCC+AGG 0.540975 3.3:+94699762 None:intergenic
TCCTAGCAGCCTCTGGATCA+CGG 0.541344 3.3:+94700929 None:intergenic
ATCAGATTGTGCCCTATGGT+GGG 0.545371 3.3:-94699713 MS.gene064877:CDS
AGACCACCATCTCCTTATGT+TGG 0.552953 3.3:-94700643 MS.gene064877:CDS
TCCTGTTATTGATGGTAGAA+GGG 0.553892 3.3:-94700887 MS.gene064877:CDS
GGTATGTACAACCCTTATGC+TGG 0.554007 3.3:-94699870 MS.gene064877:CDS
TGGGACTTGAATGGCAGGCA+CGG 0.554141 3.3:+94699662 None:intergenic
GGGACTTGAATGGCAGGCAC+GGG 0.554491 3.3:+94699663 None:intergenic
CCAGCCCGTGGTGCCTACGT+TGG 0.554812 3.3:-94700610 MS.gene064877:CDS
AGTGTGATTAATGGCATACC+AGG 0.559750 3.3:-94701494 None:intergenic
TTGATCCTGAACTTGGACCC+TGG 0.560791 3.3:+94701476 None:intergenic
AGCCATAGGAAAGTGGTTGT+TGG 0.564090 3.3:+94700575 None:intergenic
GGATATGGGACTTGAATGGC+AGG 0.565965 3.3:+94699657 None:intergenic
CTGACCAAACAGATGGTTGA+GGG 0.567593 3.3:-94698494 None:intergenic
CCTCAGTTTATGCAAGGTAG+CGG 0.569657 3.3:-94698519 MS.gene064877:CDS
GAGAAACAATAAATTGTGGT+TGG 0.575026 3.3:+94698541 None:intergenic
GTATAAGTAGTATCTCCAAA+AGG 0.576903 3.3:+94701421 None:intergenic
ATGCAGGGTTATACAGTACC+AGG 0.577248 3.3:-94699738 MS.gene064877:CDS
CATTCCCTGTTGATAGCCAT+AGG 0.583457 3.3:+94700561 None:intergenic
TAGCATACCATATGAGATTG+GGG 0.583743 3.3:+94700825 None:intergenic
GTTTCTCCTCAGTTTATGCA+AGG 0.585322 3.3:-94698525 MS.gene064877:CDS
TCCGTGATCCAGAGGCTGCT+AGG 0.585544 3.3:-94700930 MS.gene064877:CDS
GCTAGGATATGGGACTTGAA+TGG 0.586705 3.3:+94699653 None:intergenic
AACAGGACTTGGATCAGCAC+AGG 0.593305 3.3:+94700903 None:intergenic
TGTTGATAGCCATAGGAAAG+TGG 0.600019 3.3:+94700568 None:intergenic
AAGAACACCGGACGATCCAA+AGG 0.601945 3.3:-94701295 MS.gene064877:CDS
CCTGACCAAACAGATGGTTG+AGG 0.601994 3.3:-94698495 None:intergenic
CTTTCCTATGGCTATCAACA+GGG 0.608429 3.3:-94700565 MS.gene064877:CDS
TAGGGCACAATCTGATGACC+TGG 0.609886 3.3:+94699720 None:intergenic
ACCGGACGATCCAAAGGCTA+CGG 0.610204 3.3:-94701289 MS.gene064877:CDS
CTTCCAACATAAGGAGATGG+TGG 0.615698 3.3:+94700640 None:intergenic
TGAGGAGAAACAATAAATTG+TGG 0.616646 3.3:+94698537 None:intergenic
TTAACATTGGACCCACCATA+GGG 0.618343 3.3:+94699702 None:intergenic
AACCTCCAACGTAGGCACCA+CGG 0.618711 3.3:+94700605 None:intergenic
AAACTTCCAACATAAGGAGA+TGG 0.628730 3.3:+94700637 None:intergenic
GGAAGTTTGCAACCAGCCCG+TGG 0.632845 3.3:-94700622 MS.gene064877:CDS
CAGGCACACCATATATCTGA+AGG 0.636375 3.3:+94699835 None:intergenic
GGTGACTTTCCGTGATCCAG+AGG 0.637483 3.3:-94700938 MS.gene064877:CDS
AGCGGTCCTGACCAAACAGA+TGG 0.639591 3.3:-94698501 MS.gene064877:CDS
GCTTCGCATGGTCGTCCACG+TGG 0.643033 3.3:-94700850 MS.gene064877:CDS
ATAGTTGTATTCATCGCACC+AGG 0.645261 3.3:+94699816 None:intergenic
CATGGTTATACAGCAATGCA+GGG 0.646571 3.3:-94699753 MS.gene064877:CDS
CATCCCACTCACCCATAAGG+AGG 0.654523 3.3:+94700532 None:intergenic
ACCTGAATACGTATACCCAC+AGG 0.654631 3.3:-94699981 MS.gene064877:intron
GTAGCCATAACCTCCAACGT+AGG 0.685657 3.3:+94700597 None:intergenic
GTCATCACTGATAAGAACAC+CGG 0.699829 3.3:-94701307 MS.gene064877:CDS
CCGCTACCTTGCATAAACTG+AGG 0.704628 3.3:+94698519 None:intergenic
TTGGGTCAAGCTGTTCCTGG+CGG 0.707255 3.3:-94699777 MS.gene064877:CDS
GTGTGATTAATGGCATACCA+GGG 0.710100 3.3:-94701493 None:intergenic
AGCATACCATATGAGATTGG+GGG 0.719081 3.3:+94700826 None:intergenic
GTTCTTATCAGTGATGACGA+CGG 0.732189 3.3:+94701312 None:intergenic
ATTCAAGTCCCATATCCTAG+CGG 0.771653 3.3:-94699651 MS.gene064877:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAATTAAAAAATAT+AGG - chr3.3:94701216-94701235 MS.gene064877:intron 0.0%
!! AAAAATAAAATATAAATTCC+CGG + chr3.3:94700902-94700921 None:intergenic 10.0%
!! AAATTTATGTACAAAATTAA+GGG - chr3.3:94701166-94701185 MS.gene064877:intron 10.0%
!! TAAATTTATGTACAAAATTA+AGG - chr3.3:94701165-94701184 MS.gene064877:intron 10.0%
!! TGATAAATTATTTAATGTAA+CGG + chr3.3:94700521-94700540 None:intergenic 10.0%
!!! ATATCAGTTTTTTTTTTATT+TGG - chr3.3:94700025-94700044 MS.gene064877:intron 10.0%
!!! CTAGTAAATTATTTTTTTTT+TGG + chr3.3:94700778-94700797 None:intergenic 10.0%
!!! TAATTTTGTACATAAATTTA+GGG + chr3.3:94701165-94701184 None:intergenic 10.0%
!!! TTAATTTTGTACATAAATTT+AGG + chr3.3:94701166-94701185 None:intergenic 10.0%
!! AAAAATAATTTACTAGAACA+TGG - chr3.3:94700782-94700801 MS.gene064877:intron 15.0%
!! AAAATAAAATATAAATTCCC+GGG + chr3.3:94700901-94700920 None:intergenic 15.0%
!! AAAATAATTTACTAGAACAT+GGG - chr3.3:94700783-94700802 MS.gene064877:intron 15.0%
!! AATGTTAATTCCAATATATA+TGG + chr3.3:94701000-94701019 None:intergenic 15.0%
!! ATATAAACAAAGAAAGAAAT+AGG + chr3.3:94698779-94698798 None:intergenic 15.0%
!! ATGTTAATTCCAATATATAT+GGG + chr3.3:94700999-94701018 None:intergenic 15.0%
!! TATAAACAAAGAAAGAAATA+GGG + chr3.3:94698778-94698797 None:intergenic 15.0%
!! TGTTTATATTCTATCATATA+AGG - chr3.3:94698790-94698809 MS.gene064877:intron 15.0%
!!! AAATTATTTTTTTTTTGGTC+AGG + chr3.3:94700773-94700792 None:intergenic 15.0%
!!! ATAATGATAATTTTATTCCT+AGG - chr3.3:94700429-94700448 MS.gene064877:intron 15.0%
!! AATACAACTATTTATCCTTA+TGG - chr3.3:94700177-94700196 MS.gene064877:intron 20.0%
!! TAAATAATTTATCAGAACGT+GGG - chr3.3:94700527-94700546 MS.gene064877:intron 20.0%
!! TATTATTATTAGCAGATTGA+CGG + chr3.3:94699519-94699538 None:intergenic 20.0%
!! TTAAATAATTTATCAGAACG+TGG - chr3.3:94700526-94700545 MS.gene064877:intron 20.0%
!! TTATTTACTATAGAATGACT+TGG - chr3.3:94698986-94699005 MS.gene064877:intron 20.0%
!!! AATTATCATTATTGTTTTCC+TGG + chr3.3:94700421-94700440 None:intergenic 20.0%
!!! ATTATCATTATTGTTTTCCT+GGG + chr3.3:94700420-94700439 None:intergenic 20.0%
!!! GATCTTTTCAACATTATATT+TGG - chr3.3:94699945-94699964 MS.gene064877:intron 20.0%
!!! GATTTCTTCTTATCTTTTAT+AGG - chr3.3:94699308-94699327 MS.gene064877:intron 20.0%
!!! GTTTTGTAATATATGATAGA+AGG - chr3.3:94701188-94701207 MS.gene064877:intron 20.0%
!!! GTTTTTTTTTTATTTGGCTT+AGG - chr3.3:94700031-94700050 MS.gene064877:intron 20.0%
! AAACAAAAGCCCATATATAT+TGG - chr3.3:94700987-94701006 MS.gene064877:intron 25.0%
! AAATAATTTATCAGAACGTG+GGG - chr3.3:94700528-94700547 MS.gene064877:intron 25.0%
! AAGCAATGTATATTCTATGT+AGG + chr3.3:94699279-94699298 None:intergenic 25.0%
! AATTTGAGAAAATGATGACA+TGG - chr3.3:94698853-94698872 MS.gene064877:intron 25.0%
! ACAATGCATTATTATATGCA+GGG - chr3.3:94700681-94700700 MS.gene064877:intron 25.0%
! ACATGGAGACTAATATTAAA+TGG + chr3.3:94699854-94699873 None:intergenic 25.0%
! ACTTTAAATTCTGTGCAAAT+AGG - chr3.3:94701368-94701387 MS.gene064877:CDS 25.0%
! ATTTATCCTTATGGACAATT+GGG - chr3.3:94700186-94700205 MS.gene064877:intron 25.0%
! GTAATATATGATAGAAGGTT+GGG - chr3.3:94701193-94701212 MS.gene064877:intron 25.0%
! TACTTGATTAGTAGTTAGTT+AGG - chr3.3:94699688-94699707 MS.gene064877:CDS 25.0%
! TATTTATCCTTATGGACAAT+TGG - chr3.3:94700185-94700204 MS.gene064877:intron 25.0%
! TCACATATATATCTATGTGT+CGG - chr3.3:94698878-94698897 MS.gene064877:intron 25.0%
! TGTAATATATGATAGAAGGT+TGG - chr3.3:94701192-94701211 MS.gene064877:intron 25.0%
! TTATTACATCCAATTGACAT+AGG + chr3.3:94699823-94699842 None:intergenic 25.0%
!! AGTTGTTATTGCATTAACAT+TGG + chr3.3:94700295-94700314 None:intergenic 25.0%
!! ATTTAATATTAGTCTCCATG+TGG - chr3.3:94699853-94699872 MS.gene064877:CDS 25.0%
!! CATTTCTTTGAAAAAATCCT+AGG + chr3.3:94700449-94700468 None:intergenic 25.0%
!! TACAATGTTCAACAATGTTT+TGG + chr3.3:94698834-94698853 None:intergenic 25.0%
!! TCTTCTTATCTTTTATAGGA+CGG - chr3.3:94699312-94699331 MS.gene064877:intron 25.0%
!! TTTAATATTAGTCTCCATGT+GGG - chr3.3:94699854-94699873 MS.gene064877:CDS 25.0%
!!! AATTCTTAACAAGCATTGAT+TGG - chr3.3:94701050-94701069 MS.gene064877:intron 25.0%
!!! CTAGTCATTTTTATTCACAT+GGG + chr3.3:94700628-94700647 None:intergenic 25.0%
!!! GTTTTATCTTTTCAGGTATA+CGG - chr3.3:94699970-94699989 MS.gene064877:intron 25.0%
!!! TCTAGTCATTTTTATTCACA+TGG + chr3.3:94700629-94700648 None:intergenic 25.0%
!!! TTCGTAAGTATTTGATTTTC+AGG - chr3.3:94701396-94701415 MS.gene064877:CDS 25.0%
!!! TTTGGTTGTTTTATCTTTTC+AGG - chr3.3:94699963-94699982 MS.gene064877:intron 25.0%
AAAAAAACTGATATGACCTG+TGG + chr3.3:94700019-94700038 None:intergenic 30.0%
AAAAAACTGATATGACCTGT+GGG + chr3.3:94700018-94700037 None:intergenic 30.0%
AATAGCATACCATATGAGAT+TGG + chr3.3:94699161-94699180 None:intergenic 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr3.3:94700730-94700749 None:intergenic 30.0%
ACTTATACTAAAGTCTTCGT+TGG - chr3.3:94698575-94698594 MS.gene064877:intron 30.0%
AGTCAAAAAAACACGATAAC+TGG + chr3.3:94699616-94699635 None:intergenic 30.0%
ATAGCATACCATATGAGATT+GGG + chr3.3:94699160-94699179 None:intergenic 30.0%
ATGAATGATACGACATATGT+AGG - chr3.3:94701122-94701141 MS.gene064877:intron 30.0%
ATGGCTGTTCATAAACAAAA+AGG + chr3.3:94700946-94700965 None:intergenic 30.0%
CAATGCATTATTATATGCAG+GGG - chr3.3:94700682-94700701 MS.gene064877:intron 30.0%
CTATCTTATATGCATGGAAT+TGG - chr3.3:94699012-94699031 MS.gene064877:intron 30.0%
CTCCAAATTGTTCAAAGTAA+CGG + chr3.3:94698637-94698656 None:intergenic 30.0%
CTTAAGGTCTATCAATGTAA+TGG + chr3.3:94700474-94700493 None:intergenic 30.0%
CTTGCAAGAATATGTTGTAT+AGG + chr3.3:94699668-94699687 None:intergenic 30.0%
GAAAATTCTATTACCAGGAA+TGG + chr3.3:94700595-94700614 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG - chr3.3:94700680-94700699 MS.gene064877:intron 30.0%
GAGAAACAATAAATTGTGGT+TGG + chr3.3:94701443-94701462 None:intergenic 30.0%
GGAACAAAAATAATATGCCT+AGG + chr3.3:94700837-94700856 None:intergenic 30.0%
GTATAAGTAGTATCTCCAAA+AGG + chr3.3:94698563-94698582 None:intergenic 30.0%
GTCAAAAAAACACGATAACT+GGG + chr3.3:94699615-94699634 None:intergenic 30.0%
TATGGAAAACCTATGTCAAT+TGG - chr3.3:94699811-94699830 MS.gene064877:CDS 30.0%
TGAGGAGAAACAATAAATTG+TGG + chr3.3:94701447-94701466 None:intergenic 30.0%
TGGCTGTTCATAAACAAAAA+GGG + chr3.3:94700945-94700964 None:intergenic 30.0%
TGGTTTCTATCTTATATGCA+TGG - chr3.3:94699006-94699025 MS.gene064877:intron 30.0%
TGTAACTGCTAAAATAAGCA+TGG + chr3.3:94699578-94699597 None:intergenic 30.0%
! ATTTTTATTCACATGGGAGA+GGG + chr3.3:94700622-94700641 None:intergenic 30.0%
! CAATGCTTGTTAAGAATTGA+AGG + chr3.3:94701048-94701067 None:intergenic 30.0%
! CAATTGTTGAATTCTCCTTT+TGG - chr3.3:94698545-94698564 MS.gene064877:CDS 30.0%
! CTTCTTATCTTTTATAGGAC+GGG - chr3.3:94699313-94699332 MS.gene064877:intron 30.0%
! TAATTGAAGTTCTGATCAAC+AGG - chr3.3:94701239-94701258 MS.gene064877:intron 30.0%
!!! AGTTATCGTGTTTTTTTGAC+TGG - chr3.3:94699615-94699634 MS.gene064877:intron 30.0%
!!! TTCCTTTTTTGTGAGTAATG+AGG + chr3.3:94700497-94700516 None:intergenic 30.0%
AAACTTCCAACATAAGGAGA+TGG + chr3.3:94699347-94699366 None:intergenic 35.0%
AAAGAACCATAACACAGGAA+AGG + chr3.3:94699551-94699570 None:intergenic 35.0%
AAGAATTTCCACTTGTGACT+CGG - chr3.3:94700372-94700391 MS.gene064877:intron 35.0%
AGCCTCATTACTCACAAAAA+AGG - chr3.3:94700492-94700511 MS.gene064877:intron 35.0%
ATATAAATTCCCGGGAATAG+AGG + chr3.3:94700893-94700912 None:intergenic 35.0%
CAAAGAATATCCACCAAAGA+TGG + chr3.3:94700965-94700984 None:intergenic 35.0%
CAACAGTACCTTCAGATATA+TGG - chr3.3:94700138-94700157 MS.gene064877:intron 35.0%
CACAAGTGGAAATTCTTTCT+TGG + chr3.3:94700369-94700388 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr3.3:94700731-94700750 None:intergenic 35.0%
CCTAGGAATAAATAATACCG+AGG + chr3.3:94700820-94700839 None:intergenic 35.0%
CCTCGGTATTATTTATTCCT+AGG - chr3.3:94700817-94700836 MS.gene064877:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr3.3:94700729-94700748 None:intergenic 35.0%
CTTATATGCATGGAATTGGA+GGG - chr3.3:94699016-94699035 MS.gene064877:intron 35.0%
GAAAAAGGAATTCCTGTGTT+TGG + chr3.3:94700866-94700885 None:intergenic 35.0%
GAATGGTTTATCCTCCTTAT+GGG - chr3.3:94699438-94699457 MS.gene064877:intron 35.0%
GGAAAGTTATTCCAAAGGAA+TGG + chr3.3:94700399-94700418 None:intergenic 35.0%
TAGAAGGGCTAATTGTAACT+TGG - chr3.3:94699109-94699128 MS.gene064877:intron 35.0%
TAGCATACCATATGAGATTG+GGG + chr3.3:94699159-94699178 None:intergenic 35.0%
TATACTAAAGTCTTCGTTGG+TGG - chr3.3:94698578-94698597 MS.gene064877:intron 35.0%
TCTTATATGCATGGAATTGG+AGG - chr3.3:94699015-94699034 MS.gene064877:intron 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr3.3:94700742-94700761 None:intergenic 35.0%
TGTTTATGAACAGCCATCTT+TGG - chr3.3:94700949-94700968 MS.gene064877:intron 35.0%
TTGCACACTATTGCAAAAAC+TGG - chr3.3:94699475-94699494 MS.gene064877:intron 35.0%
TTTGTGAGTAATGAGGCTTA+AGG + chr3.3:94700490-94700509 None:intergenic 35.0%
! AGTAGCTAGTCTGTAAAGAA+TGG - chr3.3:94701264-94701283 MS.gene064877:intron 35.0%
! CATAGGTTTTCCATATACAG+TGG + chr3.3:94699806-94699825 None:intergenic 35.0%
! CATTTTTATTCACATGGGAG+AGG + chr3.3:94700623-94700642 None:intergenic 35.0%
! TCCTGTTATTGATGGTAGAA+GGG - chr3.3:94699094-94699113 MS.gene064877:intron 35.0%
! TTTTTATTCACATGGGAGAG+GGG + chr3.3:94700621-94700640 None:intergenic 35.0%
!! TCTATGTAGGAAGAGTATTC+TGG + chr3.3:94699266-94699285 None:intergenic 35.0%
AACTTCTACCGTGTCCAATA+GGG - chr3.3:94700090-94700109 MS.gene064877:intron 40.0%
AAGGAATTCCTGTGTTTGGT+AGG + chr3.3:94700862-94700881 None:intergenic 40.0%
AAGGGTTGTACATACCCTAT+TGG + chr3.3:94700107-94700126 None:intergenic 40.0%
AATCACTGGTCCACTGTATA+TGG - chr3.3:94699793-94699812 MS.gene064877:CDS 40.0%
AATTCCTGTGTTTGGTAGGA+AGG + chr3.3:94700858-94700877 None:intergenic 40.0%
AATTGTAACTTGGCTTCGCA+TGG - chr3.3:94699119-94699138 MS.gene064877:intron 40.0%
ACCAGTGATTACCAAATCTC+GGG + chr3.3:94699724-94699743 None:intergenic 40.0%
ACTGGTATATGTCAGTGATG+AGG - chr3.3:94699633-94699652 MS.gene064877:intron 40.0%
ACTGTTGTTGACCAGCATAA+GGG + chr3.3:94700125-94700144 None:intergenic 40.0%
ACTTTCCTATGGCTATCAAC+AGG - chr3.3:94699415-94699434 MS.gene064877:intron 40.0%
AGAATTTCCACTTGTGACTC+GGG - chr3.3:94700373-94700392 MS.gene064877:intron 40.0%
AGCATACCATATGAGATTGG+GGG + chr3.3:94699158-94699177 None:intergenic 40.0%
ATAGTTGTATTCATCGCACC+AGG + chr3.3:94700168-94700187 None:intergenic 40.0%
ATTAACATTGGACCCACCAT+AGG + chr3.3:94700283-94700302 None:intergenic 40.0%
ATTCAAGTCCCATATCCTAG+CGG - chr3.3:94700330-94700349 MS.gene064877:intron 40.0%
CACATACACTTATCAGCTGT+TGG - chr3.3:94701079-94701098 MS.gene064877:intron 40.0%
CATGGTTATACAGCAATGCA+GGG - chr3.3:94700228-94700247 MS.gene064877:intron 40.0%
CCATGCTAGTATGATCAACA+CGG + chr3.3:94698956-94698975 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr3.3:94700726-94700745 MS.gene064877:intron 40.0%
CTACCATCAATAACAGGACT+TGG + chr3.3:94699092-94699111 None:intergenic 40.0%
CTTTCCTATGGCTATCAACA+GGG - chr3.3:94699416-94699435 MS.gene064877:intron 40.0%
GACACAAAGAACCATAACAC+AGG + chr3.3:94699556-94699575 None:intergenic 40.0%
GACCAGTGATTACCAAATCT+CGG + chr3.3:94699725-94699744 None:intergenic 40.0%
GAGATGAAAATCCCGAGATT+TGG - chr3.3:94699710-94699729 MS.gene064877:CDS 40.0%
GATCCAAGTCCTGTTATTGA+TGG - chr3.3:94699086-94699105 MS.gene064877:intron 40.0%
GCTGATAAGTGTATGTGATC+TGG + chr3.3:94701076-94701095 None:intergenic 40.0%
GGAAATTCTTTCTTGGACAG+AGG + chr3.3:94700362-94700381 None:intergenic 40.0%
GGAATGGTTTATCCTCCTTA+TGG - chr3.3:94699437-94699456 MS.gene064877:intron 40.0%
GGTGGGAAAATTCTATTACC+AGG + chr3.3:94700600-94700619 None:intergenic 40.0%
GGTTGCAAACTTCCAACATA+AGG + chr3.3:94699353-94699372 None:intergenic 40.0%
GTCATCACTGATAAGAACAC+CGG - chr3.3:94698674-94698693 MS.gene064877:intron 40.0%
GTTTCTCCTCAGTTTATGCA+AGG - chr3.3:94701456-94701475 MS.gene064877:CDS 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr3.3:94700744-94700763 MS.gene064877:intron 40.0%
TACCAACAACCACTTTCCTA+TGG - chr3.3:94699404-94699423 MS.gene064877:intron 40.0%
TACTGTTGTTGACCAGCATA+AGG + chr3.3:94700126-94700145 None:intergenic 40.0%
TCATGGTTATACAGCAATGC+AGG - chr3.3:94700227-94700246 MS.gene064877:intron 40.0%
TCCTGGGAAAGTTATTCCAA+AGG + chr3.3:94700404-94700423 None:intergenic 40.0%
TGTACATACCCTATTGGACA+CGG + chr3.3:94700101-94700120 None:intergenic 40.0%
TTAACATTGGACCCACCATA+GGG + chr3.3:94700282-94700301 None:intergenic 40.0%
TTAGATGCACAATGCAGATG+TGG + chr3.3:94699894-94699913 None:intergenic 40.0%
TTATGAACAGCCATCTTTGG+TGG - chr3.3:94700952-94700971 MS.gene064877:intron 40.0%
! AAGCCTTATCTCACTAAGTG+GGG - chr3.3:94699767-94699786 MS.gene064877:CDS 40.0%
! ACAATAAATTGTGGTTGGCC+TGG + chr3.3:94701438-94701457 None:intergenic 40.0%
! CAAGCCTTATCTCACTAAGT+GGG - chr3.3:94699766-94699785 MS.gene064877:CDS 40.0%
! CATGGGTTAAGTAGATTCCT+CGG - chr3.3:94700800-94700819 MS.gene064877:intron 40.0%
! CGCCGTTACTTTGAACAATT+TGG - chr3.3:94698632-94698651 MS.gene064877:intron 40.0%
! GGTTGTTGTTGTTGTTGTAG+TGG + chr3.3:94699747-94699766 None:intergenic 40.0%
! GTCCTGTTATTGATGGTAGA+AGG - chr3.3:94699093-94699112 MS.gene064877:intron 40.0%
! GTTCTTATCAGTGATGACGA+CGG + chr3.3:94698672-94698691 None:intergenic 40.0%
! TAAAGTCTTCGTTGGTGGAT+TGG - chr3.3:94698583-94698602 MS.gene064877:intron 40.0%
! TATTAGTCTCCATGTGGGTA+AGG - chr3.3:94699859-94699878 MS.gene064877:CDS 40.0%
! TTTTTCCCATCCTCTATTCC+CGG - chr3.3:94700880-94700899 MS.gene064877:CDS 40.0%
!! AATGAGTTTTGCTCTGAACG+TGG - chr3.3:94700564-94700583 MS.gene064877:CDS 40.0%
!! ATGAGTTTTGCTCTGAACGT+GGG - chr3.3:94700565-94700584 MS.gene064877:CDS 40.0%
!! TCACCTCTAAAGCATGATTC+TGG + chr3.3:94699927-94699946 None:intergenic 40.0%
!! TCCTTTGGAATAACTTTCCC+AGG - chr3.3:94700400-94700419 MS.gene064877:intron 40.0%
!! TGTTGATAGCCATAGGAAAG+TGG + chr3.3:94699416-94699435 None:intergenic 40.0%
!!! CTTTTCAGGTATACGGCATA+TGG - chr3.3:94699977-94699996 MS.gene064877:intron 40.0%
AAATTCCCGGGAATAGAGGA+TGG + chr3.3:94700889-94700908 None:intergenic 45.0%
AATTCCCGGGAATAGAGGAT+GGG + chr3.3:94700888-94700907 None:intergenic 45.0%
ACCTGAATACGTATACCCAC+AGG - chr3.3:94700000-94700019 MS.gene064877:intron 45.0%
ACCTGTGGGTATACGTATTC+AGG + chr3.3:94700004-94700023 None:intergenic 45.0%
ACGCCAGAATCATGCTTTAG+AGG - chr3.3:94699921-94699940 MS.gene064877:intron 45.0%
AGACCACCATCTCCTTATGT+TGG - chr3.3:94699338-94699357 MS.gene064877:intron 45.0%
AGCCATAGGAAAGTGGTTGT+TGG + chr3.3:94699409-94699428 None:intergenic 45.0%
AGGTGTGTCAAGTGTCCAAT+AGG + chr3.3:94698906-94698925 None:intergenic 45.0%
ATCAGATTGTGCCCTATGGT+GGG - chr3.3:94700268-94700287 MS.gene064877:intron 45.0%
ATCTATGTGTCGGACCCTAT+TGG - chr3.3:94698888-94698907 MS.gene064877:intron 45.0%
ATGCAGGGTTATACAGTACC+AGG - chr3.3:94700243-94700262 MS.gene064877:intron 45.0%
CAACTTCTACCGTGTCCAAT+AGG - chr3.3:94700089-94700108 MS.gene064877:intron 45.0%
CAGGCACACCATATATCTGA+AGG + chr3.3:94700149-94700168 None:intergenic 45.0%
CATTATTATATGCAGGGGCC+GGG - chr3.3:94700687-94700706 MS.gene064877:intron 45.0%
CCACTTAGTGAGATAAGGCT+TGG + chr3.3:94699768-94699787 None:intergenic 45.0%
CCTCAGTTTATGCAAGGTAG+CGG - chr3.3:94701462-94701481 MS.gene064877:CDS 45.0%
CTATGGCTATCAACAGGGAA+TGG - chr3.3:94699421-94699440 MS.gene064877:intron 45.0%
CTCGAACTTGATCCTGAACT+TGG + chr3.3:94698515-94698534 None:intergenic 45.0%
CTCTTGCCTTTCCTGTGTTA+TGG - chr3.3:94699542-94699561 MS.gene064877:intron 45.0%
CTTCAGATATATGGTGTGCC+TGG - chr3.3:94700147-94700166 MS.gene064877:intron 45.0%
CTTCCAACATAAGGAGATGG+TGG + chr3.3:94699344-94699363 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr3.3:94700686-94700705 MS.gene064877:intron 45.0%
GCCCTTCTACCATCAATAAC+AGG + chr3.3:94699098-94699117 None:intergenic 45.0%
GCTAGGATATGGGACTTGAA+TGG + chr3.3:94700331-94700350 None:intergenic 45.0%
GCTTGACCCAATTGTCCATA+AGG + chr3.3:94700195-94700214 None:intergenic 45.0%
GGACACGGTAGAAGTTGAAA+AGG + chr3.3:94700086-94700105 None:intergenic 45.0%
GGGAATAGAGGATGGGAAAA+AGG + chr3.3:94700881-94700900 None:intergenic 45.0%
GGTATGTACAACCCTTATGC+TGG - chr3.3:94700111-94700130 MS.gene064877:intron 45.0%
GGTGTGTCAAGTGTCCAATA+GGG + chr3.3:94698905-94698924 None:intergenic 45.0%
TATCCTCCTTATGGGTGAGT+GGG - chr3.3:94699446-94699465 MS.gene064877:intron 45.0%
TATGATCAACACGGTAGCAC+CGG + chr3.3:94698947-94698966 None:intergenic 45.0%
TGCACAATGCAGATGTGGTT+AGG + chr3.3:94699889-94699908 None:intergenic 45.0%
TGTTCCTTCCTACCAAACAC+AGG - chr3.3:94700851-94700870 MS.gene064877:CDS 45.0%
TTAGGAACACCTTACCCACA+TGG + chr3.3:94699871-94699890 None:intergenic 45.0%
TTATCCTCCTTATGGGTGAG+TGG - chr3.3:94699445-94699464 MS.gene064877:intron 45.0%
! CAGGATCAAGTTCGAGTTCT+GGG - chr3.3:94698519-94698538 MS.gene064877:CDS 45.0%
! CCAAGCCTTATCTCACTAAG+TGG - chr3.3:94699765-94699784 MS.gene064877:CDS 45.0%
! CCGTGTTGATCATACTAGCA+TGG - chr3.3:94698953-94698972 MS.gene064877:intron 45.0%
! TCAGGATCAAGTTCGAGTTC+TGG - chr3.3:94698518-94698537 MS.gene064877:CDS 45.0%
! TCCCGAGATTTGGTAATCAC+TGG - chr3.3:94699720-94699739 MS.gene064877:CDS 45.0%
! TGCATGGAATTGGAGGGTAT+AGG - chr3.3:94699022-94699041 MS.gene064877:intron 45.0%
! TTTTCCCATCCTCTATTCCC+GGG - chr3.3:94700881-94700900 MS.gene064877:CDS 45.0%
!! CATTCCCTGTTGATAGCCAT+AGG + chr3.3:94699423-94699442 None:intergenic 45.0%
!! TTTTTGGTCAGGTAGCCTAG+TGG + chr3.3:94700762-94700781 None:intergenic 45.0%
AACAGGACTTGGATCAGCAC+AGG + chr3.3:94699081-94699100 None:intergenic 50.0%
AAGAACACCGGACGATCCAA+AGG - chr3.3:94698686-94698705 MS.gene064877:intron 50.0%
ACCAACTGAGCTATGCTCAC+AGG + chr3.3:94700658-94700677 None:intergenic 50.0%
ACGCCCCACTTAGTGAGATA+AGG + chr3.3:94699773-94699792 None:intergenic 50.0%
ACTAAGTGGGGCGTAATCAC+TGG - chr3.3:94699779-94699798 MS.gene064877:CDS 50.0%
AGGACTGTACCGCTAGGATA+TGG + chr3.3:94700342-94700361 None:intergenic 50.0%
CAATTGGGTCAAGCTGTTCC+TGG - chr3.3:94700201-94700220 MS.gene064877:intron 50.0%
CATCAGATTGTGCCCTATGG+TGG - chr3.3:94700267-94700286 MS.gene064877:intron 50.0%
CCGCTACCTTGCATAAACTG+AGG + chr3.3:94701465-94701484 None:intergenic 50.0%
GCTCACAAAACCGTAGCCTT+TGG + chr3.3:94698705-94698724 None:intergenic 50.0%
GGACTGTACCGCTAGGATAT+GGG + chr3.3:94700341-94700360 None:intergenic 50.0%
GGATATGGGACTTGAATGGC+AGG + chr3.3:94700327-94700346 None:intergenic 50.0%
GGTCATCAGATTGTGCCCTA+TGG - chr3.3:94700264-94700283 MS.gene064877:intron 50.0%
GTAGCCATAACCTCCAACGT+AGG + chr3.3:94699387-94699406 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG - chr3.3:94700658-94700677 MS.gene064877:intron 50.0%
TAGGGCACAATCTGATGACC+TGG + chr3.3:94700264-94700283 None:intergenic 50.0%
TATTCACATGGGAGAGGGGT+GGG + chr3.3:94700617-94700636 None:intergenic 50.0%
TCCTGTGAGCATAGCTCAGT+TGG - chr3.3:94700654-94700673 MS.gene064877:CDS 50.0%
TTATTCACATGGGAGAGGGG+TGG + chr3.3:94700618-94700637 None:intergenic 50.0%
TTGATCCTGAACTTGGACCC+TGG + chr3.3:94698508-94698527 None:intergenic 50.0%
TTGGACACTTGACACACCTC+TGG - chr3.3:94698907-94698926 MS.gene064877:intron 50.0%
! GAACGTGGGTTTTCCATTCC+TGG - chr3.3:94700579-94700598 MS.gene064877:CDS 50.0%
! TCTGGTCAGATCAGAAGTGC+CGG - chr3.3:94698925-94698944 MS.gene064877:intron 50.0%
!! AATTGTGGTTGGCCTGGAAC+TGG + chr3.3:94701432-94701451 None:intergenic 50.0%
!! CTTCGTTGGTGGATTGGCAT+GGG - chr3.3:94698589-94698608 MS.gene064877:intron 50.0%
!! TCTTCGTTGGTGGATTGGCA+TGG - chr3.3:94698588-94698607 MS.gene064877:intron 50.0%
AACCTCCAACGTAGGCACCA+CGG + chr3.3:94699379-94699398 None:intergenic 55.0%
ACCGGACGATCCAAAGGCTA+CGG - chr3.3:94698692-94698711 MS.gene064877:intron 55.0%
ACCGTAGCCTTTGGATCGTC+CGG + chr3.3:94698696-94698715 None:intergenic 55.0%
AGCGGTCCTGACCAAACAGA+TGG - chr3.3:94701480-94701499 MS.gene064877:CDS 55.0%
CAGCATCCCACTCACCCATA+AGG + chr3.3:94699455-94699474 None:intergenic 55.0%
CATCCCACTCACCCATAAGG+AGG + chr3.3:94699452-94699471 None:intergenic 55.0%
CGTGGACCCCCAATCTCATA+TGG - chr3.3:94699149-94699168 MS.gene064877:intron 55.0%
GCATACCAGGGTCCAAGTTC+AGG - chr3.3:94698500-94698519 MS.gene064877:CDS 55.0%
GCTGTATAACCATGACCGCC+AGG + chr3.3:94700222-94700241 None:intergenic 55.0%
GGAATTGCTGCACCAGTTCC+AGG - chr3.3:94701417-94701436 MS.gene064877:CDS 55.0%
GGCACTTCTGATCTGACCAG+AGG + chr3.3:94698926-94698945 None:intergenic 55.0%
GGTGACTTTCCGTGATCCAG+AGG - chr3.3:94699043-94699062 MS.gene064877:intron 55.0%
GGTGCCTACGTTGGAGGTTA+TGG - chr3.3:94699380-94699399 MS.gene064877:intron 55.0%
TATGAGATTGGGGGTCCACG+TGG + chr3.3:94699149-94699168 None:intergenic 55.0%
TCAGAACGTGGGGAACACAC+TGG - chr3.3:94700538-94700557 MS.gene064877:intron 55.0%
TCCTAGCAGCCTCTGGATCA+CGG + chr3.3:94699055-94699074 None:intergenic 55.0%
TGGGACTTGAATGGCAGGCA+CGG + chr3.3:94700322-94700341 None:intergenic 55.0%
TTGGGTCAAGCTGTTCCTGG+CGG - chr3.3:94700204-94700223 MS.gene064877:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+AGG + chr3.3:94700720-94700739 None:intergenic 55.0%
! TGTGACTCGGGCCATTCCTT+TGG - chr3.3:94700385-94700404 MS.gene064877:intron 55.0%
ACCTCCAACGTAGGCACCAC+GGG + chr3.3:94699378-94699397 None:intergenic 60.0%
CAAGCTGTTCCTGGCGGTCA+TGG - chr3.3:94700210-94700229 MS.gene064877:intron 60.0%
GGAAGTTTGCAACCAGCCCG+TGG - chr3.3:94699359-94699378 MS.gene064877:intron 60.0%
GGAATGGCCCGAGTCACAAG+TGG + chr3.3:94700383-94700402 None:intergenic 60.0%
GGACAGAGGACTGTACCGCT+AGG + chr3.3:94700348-94700367 None:intergenic 60.0%
GGGACTTGAATGGCAGGCAC+GGG + chr3.3:94700321-94700340 None:intergenic 60.0%
GGTGTCCGAGGTTCGAAACC+CGG + chr3.3:94700708-94700727 None:intergenic 60.0%
TCCGTGATCCAGAGGCTGCT+AGG - chr3.3:94699051-94699070 MS.gene064877:intron 60.0%
AGGGGCCGGGTTTCGAACCT+CGG - chr3.3:94700700-94700719 MS.gene064877:intron 65.0%
CAGGCTCTCCTAGCAGCCTC+TGG + chr3.3:94699062-94699081 None:intergenic 65.0%
GCTTCGCATGGTCGTCCACG+TGG - chr3.3:94699131-94699150 MS.gene064877:intron 65.0%
CCAACGTAGGCACCACGGGC+TGG + chr3.3:94699374-94699393 None:intergenic 70.0%
CCAGCCCGTGGTGCCTACGT+TGG - chr3.3:94699371-94699390 MS.gene064877:intron 70.0%
GCCCGTGGTGCCTACGTTGG+AGG - chr3.3:94699374-94699393 MS.gene064877:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 94698497 94701506 94698497 ID=MS.gene064877
chr3.3 mRNA 94698497 94701506 94698497 ID=MS.gene064877.t1;Parent=MS.gene064877
chr3.3 exon 94701285 94701506 94701285 ID=MS.gene064877.t1.exon1;Parent=MS.gene064877.t1
chr3.3 CDS 94701285 94701506 94701285 ID=cds.MS.gene064877.t1;Parent=MS.gene064877.t1
chr3.3 exon 94700833 94700959 94700833 ID=MS.gene064877.t1.exon2;Parent=MS.gene064877.t1
chr3.3 CDS 94700833 94700959 94700833 ID=cds.MS.gene064877.t1;Parent=MS.gene064877.t1
chr3.3 exon 94700544 94700673 94700544 ID=MS.gene064877.t1.exon3;Parent=MS.gene064877.t1
chr3.3 CDS 94700544 94700673 94700544 ID=cds.MS.gene064877.t1;Parent=MS.gene064877.t1
chr3.3 exon 94699982 94700018 94699982 ID=MS.gene064877.t1.exon4;Parent=MS.gene064877.t1
chr3.3 CDS 94699982 94700018 94699982 ID=cds.MS.gene064877.t1;Parent=MS.gene064877.t1
chr3.3 exon 94699652 94699892 94699652 ID=MS.gene064877.t1.exon5;Parent=MS.gene064877.t1
chr3.3 CDS 94699652 94699892 94699652 ID=cds.MS.gene064877.t1;Parent=MS.gene064877.t1
chr3.3 exon 94698497 94698585 94698497 ID=MS.gene064877.t1.exon6;Parent=MS.gene064877.t1
chr3.3 CDS 94698497 94698585 94698497 ID=cds.MS.gene064877.t1;Parent=MS.gene064877.t1
Gene Sequence

>MS.gene064877

ATGGCATACCAGGGTCCAAGTTCAGGATCAAGTTCGAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACTACTTATACTAAAGTCTTCGTTGGTGGATTGGCATGGGAGACTCAGAGTGAAACTATGCGCCGTTACTTTGAACAATTTGGAGATATTCTTGAAGCCGTCGTCATCACTGATAAGAACACCGGACGATCCAAAGGCTACGGTTTTGTGAGCATCTTTGCTTTTATCAATTCATTTATTAGTTGTTGACATTACTATTACTACCCTATTTCTTTCTTTGTTTATATTCTATCATATAAGGCTATAACTCATTTTATTACCAAAACATTGTTGAACATTGTAATTTGAGAAAATGATGACATGGAATCACATATATATCTATGTGTCGGACCCTATTGGACACTTGACACACCTCTGGTCAGATCAGAAGTGCCGGTGCTACCGTGTTGATCATACTAGCATGGTTGCATTTTTTTATTTACTATAGAATGACTTGGTTTCTATCTTATATGCATGGAATTGGAGGGTATAGGTGACTTTCCGTGATCCAGAGGCTGCTAGGAGAGCCTGTGCTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCGCATGGTCGTCCACGTGGACCCCCAATCTCATATGGTATGCTATTATTTCTTAACAAATGAGTTTATTCTCAAGTGATGTTATATTATTCTTTGATATGCATAGCAGTCTGCTGCAACTTGAAGTTTCCAGAATACTCTTCCTACATAGAATATACATTGCTTCTATTTTCTGATTTCTTCTTATCTTTTATAGGACGGGTAAGACCACCATCTCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCCTACGTTGGAGGTTATGGCTACCAACAACCACTTTCCTATGGCTATCAACAGGGAATGGTTTATCCTCCTTATGGGTGAGTGGGATGCTGTTGCACACTATTGCAAAAACTGGATTTGAAGATTATTTTCACCGTCAATCTGCTAATAATAATAATGCTCTTGCCTTTCCTGTGTTATGGTTCTTTGTGTCCATGCTTATTTTAGCAGTTACACAACTCTTTTTGAACCCAGTTATCGTGTTTTTTTGACTGGTATATGTCAGTGATGAGGTCAACTAGACCTATACAACATATTCTTGCAAGTACTTGATTAGTAGTTAGTTAGGAGATGAAAATCCCGAGATTTGGTAATCACTGGTCCACTACAACAACAACAACAACCAAGCCTTATCTCACTAAGTGGGGCGTAATCACTGGTCCACTGTATATGGAAAACCTATGTCAATTGGATGTAATAAACTAATGACCATTTAATATTAGTCTCCATGTGGGTAAGGTGTTCCTAACCACATCTGCATTGTGCATCTAAATGTATCACGCCAGAATCATGCTTTAGAGGTGATCTTTTCAACATTATATTTGGTTGTTTTATCTTTTCAGGTATACGGCATATGGACCTGAATACGTATACCCACAGGTCATATCAGTTTTTTTTTTATTTGGCTTAGGATAAATGTCTATTATTTGTGAAATGCTGACCTTTTCAACTTCTACCGTGTCCAATAGGGTATGTACAACCCTTATGCTGGTCAACAACAGTACCTTCAGATATATGGTGTGCCTGGTGCGATGAATACAACTATTTATCCTTATGGACAATTGGGTCAAGCTGTTCCTGGCGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGGTCCAATGTTAATGCAATAACAACTTCACCCGTGCCTGCCATTCAAGTCCCATATCCTAGCGGTACAGTCCTCTGTCCAAGAAAGAATTTCCACTTGTGACTCGGGCCATTCCTTTGGAATAACTTTCCCAGGAAAACAATAATGATAATTTTATTCCTAGGATTTTTTCAAAGAAATGAACCATTACATTGATAGACCTTAAGCCTCATTACTCACAAAAAAGGAAACCGTTACATTAAATAATTTATCAGAACGTGGGGAACACACTGGTAAAATGAGTTTTGCTCTGAACGTGGGTTTTCCATTCCTGGTAATAGAATTTTCCCACCCCTCTCCCATGTGAATAAAAATGACTAGAACATGTCCTGTGAGCATAGCTCAGTTGGTAGGACAATGCATTATTATATGCAGGGGCCGGGTTTCGAACCTCGGACACCCCACTTATTCACCTTATAAGGTGAATTCTAGCCACTAGGCTACCTGACCAAAAAAAAAATAATTTACTAGAACATGGGTTAAGTAGATTCCTCGGTATTATTTATTCCTAGGCATATTATTTTTGTTCCTTCCTACCAAACACAGGAATTCCTTTTTCCCATCCTCTATTCCCGGGAATTTATATTTTATTTTTTTATTTCTGAAACAAATGCTCCCTTTTTGTTTATGAACAGCCATCTTTGGTGGATATTCTTTGAGAAACAAAAGCCCATATATATTGGAATTAACATTCATTTGAAAACATATTAGCAAATAACCTTCAATTCTTAACAAGCATTGATTGGCCAGATCACATACACTTATCAGCTGTTGGTATATAAATAAATGAGATTAATGAATGATACGACATATGTAGGCAATTTCAGTTGTCAAACCCTAAATTTATGTACAAAATTAAGGGTTTTGTAATATATGATAGAAGGTTGGGTTTATTTAATTAAAAAATATAGGTAATTGAAGTTCTGATCAACAGGAAAGTAGCTAGTCTGTAAAGAATGGAGATTCGTTTTATATGTACAGTGTTGTAAGATTGCATATAGAGCAAGTCATTAAAATCTATTGATTATTATTTAGCACAAAACTTTAAATTCTGTGCAAATAGGTGTGATTCGTAAGTATTTGATTTTCAGGAATTGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGATGGTTGA
Protein sequence

>MS.gene064877.t1

MAYQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPPSPYVGSLQPARGAYVGGYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAMNTTIYPYGQLGQAVPGGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGIAAPVPGQPQFIVSPQFMQGSGPDQTDG