Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065546.t1 | XP_003617619.1 | 98.4 | 384 | 6 | 0 | 1 | 384 | 1 | 384 | 1.00E-206 | 729.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065546.t1 | Q43086 | 91.2 | 386 | 32 | 1 | 1 | 384 | 1 | 386 | 1.9e-193 | 676.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065546.t1 | G7K8M5 | 98.4 | 384 | 6 | 0 | 1 | 384 | 1 | 384 | 7.3e-207 | 729.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene065546 | 0.800406 | 1.46E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065546.t1 | MTR_5g093570 | 98.438 | 384 | 6 | 0 | 1 | 384 | 1 | 384 | 0.0 | 784 |
| MS.gene065546.t1 | MTR_4g096900 | 74.680 | 391 | 92 | 3 | 1 | 384 | 1 | 391 | 0.0 | 574 |
| MS.gene065546.t1 | MTR_5g093570 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 543 |
| MS.gene065546.t1 | MTR_4g096900 | 71.354 | 384 | 62 | 2 | 1 | 384 | 1 | 336 | 0.0 | 533 |
| MS.gene065546.t1 | MTR_1g022420 | 28.308 | 325 | 211 | 9 | 63 | 377 | 49 | 361 | 7.07e-24 | 102 |
| MS.gene065546.t1 | MTR_3g112050 | 29.042 | 334 | 208 | 13 | 57 | 377 | 46 | 363 | 1.34e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065546.t1 | AT3G20330 | 70.822 | 377 | 102 | 4 | 8 | 384 | 22 | 390 | 0.0 | 535 |
| MS.gene065546.t1 | AT3G20330 | 70.822 | 377 | 102 | 4 | 8 | 384 | 22 | 390 | 0.0 | 535 |
| MS.gene065546.t1 | AT1G75330 | 28.438 | 320 | 212 | 11 | 72 | 384 | 66 | 375 | 9.81e-19 | 87.4 |
Find 72 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGGCAGTTTGGAGTTTC+TGG | 0.131171 | 5.1:+74617720 | MS.gene065546:CDS |
| TATTAGGATGGCTCTATTAA+AGG | 0.209499 | 5.1:+74619838 | MS.gene065546:CDS |
| TATACCATCGAAAGAGAAAT+TGG | 0.254495 | 5.1:+74619146 | MS.gene065546:CDS |
| CCATCCCCTGCATTGATTAC+TGG | 0.325499 | 5.1:-74618281 | None:intergenic |
| AATATTAGGCACAACTCATC+TGG | 0.343617 | 5.1:+74617900 | MS.gene065546:CDS |
| ATCTGGGAGCCAAATGCTTA+AGG | 0.347148 | 5.1:+74617917 | MS.gene065546:CDS |
| TGCCTCTTGCCTCTTCATAA+AGG | 0.350390 | 5.1:-74619560 | None:intergenic |
| CTGCGTGTTGTTTATCAAAC+TGG | 0.352886 | 5.1:+74617667 | MS.gene065546:CDS |
| CGCATTCAGAAGGAAAGATT+TGG | 0.357639 | 5.1:+74619525 | MS.gene065546:CDS |
| CAAGGAGTATGGAGAATATT+AGG | 0.360835 | 5.1:+74617886 | MS.gene065546:CDS |
| GGAAGAAAGTTCTGATTTGA+TGG | 0.366309 | 5.1:+74619467 | MS.gene065546:CDS |
| CGAAAGAGAAATTGGAAAAC+TGG | 0.370154 | 5.1:+74619154 | MS.gene065546:CDS |
| ATTTCATCATGTGGGCAGTT+TGG | 0.384278 | 5.1:+74617711 | MS.gene065546:CDS |
| ATTCGAAGTTGCAAGGAGTA+TGG | 0.387373 | 5.1:+74617875 | MS.gene065546:CDS |
| ATCCAAGAGCTGCTTACTTT+AGG | 0.391677 | 5.1:+74619795 | MS.gene065546:CDS |
| TGAGGTAGCCCTTAAGCATT+TGG | 0.398093 | 5.1:-74617926 | None:intergenic |
| ACCTGAGTAGGATGCTGTCC+CGG | 0.422398 | 5.1:-74618305 | None:intergenic |
| TCTGGGAGCCAAATGCTTAA+GGG | 0.435867 | 5.1:+74617918 | MS.gene065546:CDS |
| GGAATTAAAGTTGGGCTTGT+CGG | 0.443920 | 5.1:+74619179 | MS.gene065546:CDS |
| TGCCTAAAGTAAGCAGCTCT+TGG | 0.451081 | 5.1:-74619797 | None:intergenic |
| CTTGTCGGAGACCTTGCTAA+TGG | 0.458157 | 5.1:+74619194 | MS.gene065546:CDS |
| AACTGGACGGAATTAAAGTT+GGG | 0.464067 | 5.1:+74619171 | MS.gene065546:CDS |
| CCTGAGTAGGATGCTGTCCC+GGG | 0.480885 | 5.1:-74618304 | None:intergenic |
| AAGTTCTGATTTGATGGAAG+TGG | 0.481405 | 5.1:+74619473 | MS.gene065546:CDS |
| TTGTCGGAGACCTTGCTAAT+GGG | 0.487514 | 5.1:+74619195 | MS.gene065546:CDS |
| AATCAATGCAGGGGATGGCC+CGG | 0.489677 | 5.1:+74618286 | MS.gene065546:CDS |
| AAACTGGACGGAATTAAAGT+TGG | 0.489861 | 5.1:+74619170 | MS.gene065546:CDS |
| CAAAATTAACCTTTATGAAG+AGG | 0.493173 | 5.1:+74619551 | MS.gene065546:CDS |
| GGCAGACTCAAATGAAAGCC+TGG | 0.498474 | 5.1:-74617982 | None:intergenic |
| GAACTTACCTCGTCTAGTCT+TGG | 0.502976 | 5.1:-74619648 | None:intergenic |
| TCCTAATGTGGTCAAAATGA+AGG | 0.506578 | 5.1:+74619283 | MS.gene065546:CDS |
| AGCATTCCAGTAATCAATGC+AGG | 0.507878 | 5.1:+74618275 | MS.gene065546:CDS |
| GATACTATAAGAACAGTTGA+AGG | 0.526041 | 5.1:+74618185 | MS.gene065546:intron |
| TCGAAGTCAATTTCATCATG+TGG | 0.533906 | 5.1:+74617702 | MS.gene065546:CDS |
| GTCTTGCGGCACTTTGAAAG+TGG | 0.534162 | 5.1:+74618224 | MS.gene065546:CDS |
| TTCTCACAACCGAAAATGCT+AGG | 0.536425 | 5.1:+74618027 | MS.gene065546:CDS |
| ATCAATGCAGGGGATGGCCC+GGG | 0.539899 | 5.1:+74618287 | MS.gene065546:CDS |
| AAATGAAAGCCTGGTTCTAG+TGG | 0.546373 | 5.1:-74617973 | None:intergenic |
| GACATCAGAAGGAGTGGAGT+GGG | 0.556346 | 5.1:+74619446 | MS.gene065546:CDS |
| TTATCAAACTCGCATTCAGA+AGG | 0.558560 | 5.1:+74619515 | MS.gene065546:CDS |
| CGAAGTCAATTTCATCATGT+GGG | 0.559355 | 5.1:+74617703 | MS.gene065546:CDS |
| AAAGAGTATCTGACATCAGA+AGG | 0.561446 | 5.1:+74619435 | MS.gene065546:CDS |
| GTATCTGACATCAGAAGGAG+TGG | 0.566566 | 5.1:+74619440 | MS.gene065546:CDS |
| CCAGTAATCAATGCAGGGGA+TGG | 0.568375 | 5.1:+74618281 | MS.gene065546:CDS |
| TAATTTAATGCAGATTGAAG+TGG | 0.571556 | 5.1:+74619760 | MS.gene065546:intron |
| AAATTCGTTCATACCTGAGT+AGG | 0.573322 | 5.1:-74618317 | None:intergenic |
| ACCTCGTCTAGTCTTGGAAG+AGG | 0.575561 | 5.1:-74619642 | None:intergenic |
| ATATTAGGCACAACTCATCT+GGG | 0.576291 | 5.1:+74617901 | MS.gene065546:CDS |
| ACGAGCCGTCCACTAGAACC+AGG | 0.583632 | 5.1:+74617964 | MS.gene065546:CDS |
| CCCGGGACAGCATCCTACTC+AGG | 0.583755 | 5.1:+74618304 | MS.gene065546:CDS |
| GAGTCTGCCATGAGAAGACT+AGG | 0.584368 | 5.1:+74617996 | MS.gene065546:CDS |
| AAATGGTCTATATATTAGGA+TGG | 0.589726 | 5.1:+74619826 | MS.gene065546:CDS |
| AACCTTTATGAAGAGGCAAG+AGG | 0.599392 | 5.1:+74619558 | MS.gene065546:CDS |
| AATGCTTAAGGGCTACCTCA+TGG | 0.601964 | 5.1:+74617929 | MS.gene065546:CDS |
| CCCTCTTCCAAGACTAGACG+AGG | 0.602362 | 5.1:+74619641 | MS.gene065546:CDS |
| ATGCTATATTCGAAGTTGCA+AGG | 0.604798 | 5.1:+74617868 | MS.gene065546:CDS |
| GCATTCCAGTAATCAATGCA+GGG | 0.605888 | 5.1:+74618276 | MS.gene065546:CDS |
| ATCACCACCTAGTCTTCTCA+TGG | 0.606772 | 5.1:-74618003 | None:intergenic |
| CCTCGTCTAGTCTTGGAAGA+GGG | 0.610090 | 5.1:-74619641 | None:intergenic |
| AGAGAAATTGGAAAACTGGA+CGG | 0.613626 | 5.1:+74619158 | MS.gene065546:CDS |
| ATATTTCGTCTCTCCTAATG+TGG | 0.618065 | 5.1:+74619271 | MS.gene065546:CDS |
| ATTGACTTCGAATGACTCGA+TGG | 0.626961 | 5.1:-74617690 | None:intergenic |
| GAAAGCCTGGTTCTAGTGGA+CGG | 0.629871 | 5.1:-74617969 | None:intergenic |
| ACTCTGATATAATTGTCTTG+CGG | 0.632379 | 5.1:+74618210 | MS.gene065546:CDS |
| AGACCTTGCTAATGGGAGAA+CGG | 0.636604 | 5.1:+74619202 | MS.gene065546:CDS |
| TCTCACAACCGAAAATGCTA+GGG | 0.642358 | 5.1:+74618028 | MS.gene065546:CDS |
| GAACCGTTCTCCCATTAGCA+AGG | 0.649511 | 5.1:-74619205 | None:intergenic |
| TGACATCAGAAGGAGTGGAG+TGG | 0.656240 | 5.1:+74619445 | MS.gene065546:CDS |
| CATTCCAGTAATCAATGCAG+GGG | 0.672187 | 5.1:+74618277 | MS.gene065546:CDS |
| GCTAAAGGAGAGACGCTCGA+AGG | 0.684802 | 5.1:+74618065 | MS.gene065546:CDS |
| CGTAAAACAAAGTAGCCATG+AGG | 0.710403 | 5.1:-74617944 | None:intergenic |
| TCTGCCATGAGAAGACTAGG+TGG | 0.792973 | 5.1:+74617999 | MS.gene065546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTATAATGATTTGAA+TGG | + | chr5.1:74619005-74619024 | MS.gene065546:intron | 10.0% |
| !!! | AAAAACTAAAGTATATTTTA+AGG | - | chr5.1:74618534-74618553 | None:intergenic | 10.0% |
| !! | ATATTACTTGGAAAATTTAA+GGG | + | chr5.1:74618444-74618463 | MS.gene065546:intron | 15.0% |
| !! | ATGTTTATTATGTATATATC+AGG | + | chr5.1:74618652-74618671 | MS.gene065546:intron | 15.0% |
| !! | TATATTACTTGGAAAATTTA+AGG | + | chr5.1:74618443-74618462 | MS.gene065546:intron | 15.0% |
| !!! | GTATATTTTAAGGTAATTTT+AGG | - | chr5.1:74618524-74618543 | None:intergenic | 15.0% |
| !!! | TCTATCTTTTAAAAAGTAAA+CGG | + | chr5.1:74619084-74619103 | MS.gene065546:intron | 15.0% |
| !! | AGAAATAATGATAAAACACT+TGG | - | chr5.1:74619067-74619086 | None:intergenic | 20.0% |
| !!! | TCAAACTTTCAGAATATTTT+AGG | + | chr5.1:74618701-74618720 | MS.gene065546:intron | 20.0% |
| !!! | TTTGCTTTTGTCAAATAAAA+GGG | - | chr5.1:74618096-74618115 | None:intergenic | 20.0% |
| ! | AAATGGTCTATATATTAGGA+TGG | + | chr5.1:74619826-74619845 | MS.gene065546:CDS | 25.0% |
| ! | AAGATGATATGAAATGTCAA+GGG | + | chr5.1:74619362-74619381 | MS.gene065546:intron | 25.0% |
| ! | AATGGTAAATGAATGTGAAA+TGG | + | chr5.1:74619023-74619042 | MS.gene065546:intron | 25.0% |
| ! | ATGATTTACAAATACACAAG+AGG | - | chr5.1:74618755-74618774 | None:intergenic | 25.0% |
| ! | CAAAATTAACCTTTATGAAG+AGG | + | chr5.1:74619551-74619570 | MS.gene065546:CDS | 25.0% |
| ! | CGAAAAATGGTCTATATATT+AGG | + | chr5.1:74619822-74619841 | MS.gene065546:CDS | 25.0% |
| ! | TAAAGTTACAGAGTTTAATG+TGG | - | chr5.1:74618807-74618826 | None:intergenic | 25.0% |
| ! | TAATTTAATGCAGATTGAAG+TGG | + | chr5.1:74619760-74619779 | MS.gene065546:intron | 25.0% |
| ! | TCTGTCTATTGAATAAAGAA+AGG | + | chr5.1:74618781-74618800 | MS.gene065546:intron | 25.0% |
| ! | TTATTTACCAACTGACAAAA+TGG | + | chr5.1:74618874-74618893 | MS.gene065546:intron | 25.0% |
| !! | AAAATCAAAACTTTTGTGCA+GGG | + | chr5.1:74617743-74617762 | MS.gene065546:CDS | 25.0% |
| !! | GCTATGGAATTTTCTTTTAT+AGG | + | chr5.1:74619404-74619423 | MS.gene065546:intron | 25.0% |
| !!! | CTTTGCTTTTGTCAAATAAA+AGG | - | chr5.1:74618097-74618116 | None:intergenic | 25.0% |
| !!! | TCTTTTAAAAAGTAAACGGA+CGG | + | chr5.1:74619088-74619107 | MS.gene065546:intron | 25.0% |
| !!! | TGTAAATCAAGATGTTTTGA+AGG | + | chr5.1:74619590-74619609 | MS.gene065546:CDS | 25.0% |
| !!! | TTACAATCTTTTTTCTAGTG+TGG | + | chr5.1:74618420-74618439 | MS.gene065546:intron | 25.0% |
| AATCTGATAAGAACATAGGA+TGG | + | chr5.1:74618390-74618409 | MS.gene065546:intron | 30.0% | |
| ACAAAAGCAAAGTTCATTTG+GGG | + | chr5.1:74618105-74618124 | MS.gene065546:intron | 30.0% | |
| ACAAATACACAAGAGGTTAT+AGG | - | chr5.1:74618748-74618767 | None:intergenic | 30.0% | |
| ACTCTGATATAATTGTCTTG+CGG | + | chr5.1:74618210-74618229 | MS.gene065546:CDS | 30.0% | |
| AGTCAATCTGATAAGAACAT+AGG | + | chr5.1:74618386-74618405 | MS.gene065546:intron | 30.0% | |
| GAAGATGATATGAAATGTCA+AGG | + | chr5.1:74619361-74619380 | MS.gene065546:intron | 30.0% | |
| GACAAAAGCAAAGTTCATTT+GGG | + | chr5.1:74618104-74618123 | MS.gene065546:intron | 30.0% | |
| GATACTATAAGAACAGTTGA+AGG | + | chr5.1:74618185-74618204 | MS.gene065546:intron | 30.0% | |
| GTAAATGAATGTGAAATGGA+TGG | + | chr5.1:74619027-74619046 | MS.gene065546:intron | 30.0% | |
| TATACCATCGAAAGAGAAAT+TGG | + | chr5.1:74619146-74619165 | MS.gene065546:CDS | 30.0% | |
| TATTAACAGGCAAATTGCTA+GGG | + | chr5.1:74618589-74618608 | MS.gene065546:intron | 30.0% | |
| TGACAAAAGCAAAGTTCATT+TGG | + | chr5.1:74618103-74618122 | MS.gene065546:intron | 30.0% | |
| TTCTAGTGTGGTATATTACT+TGG | + | chr5.1:74618432-74618451 | MS.gene065546:intron | 30.0% | |
| ! | CGAAATATATTTTCACGTCA+TGG | - | chr5.1:74619259-74619278 | None:intergenic | 30.0% |
| ! | CTATTAAAGGTTTTGCTTCT+TGG | + | chr5.1:74619851-74619870 | MS.gene065546:CDS | 30.0% |
| ! | GAAAATCAAAACTTTTGTGC+AGG | + | chr5.1:74617742-74617761 | MS.gene065546:CDS | 30.0% |
| ! | TATTAGGATGGCTCTATTAA+AGG | + | chr5.1:74619838-74619857 | MS.gene065546:CDS | 30.0% |
| ! | TTTTCCAATTTCTCTTTCGA+TGG | - | chr5.1:74619153-74619172 | None:intergenic | 30.0% |
| !!! | GATGATTTTGAAGCTATCTT+TGG | - | chr5.1:74617648-74617667 | None:intergenic | 30.0% |
| AAACTGGACGGAATTAAAGT+TGG | + | chr5.1:74619170-74619189 | MS.gene065546:CDS | 35.0% | |
| AAATGTCAAGGGACATTACA+TGG | + | chr5.1:74619373-74619392 | MS.gene065546:intron | 35.0% | |
| AAATTCGTTCATACCTGAGT+AGG | - | chr5.1:74618320-74618339 | None:intergenic | 35.0% | |
| AACTGGACGGAATTAAAGTT+GGG | + | chr5.1:74619171-74619190 | MS.gene065546:CDS | 35.0% | |
| AATATTAGGCACAACTCATC+TGG | + | chr5.1:74617900-74617919 | MS.gene065546:CDS | 35.0% | |
| AGAGAAATTGGAAAACTGGA+CGG | + | chr5.1:74619158-74619177 | MS.gene065546:CDS | 35.0% | |
| AGTAGATACATCTCATGACA+TGG | - | chr5.1:74619680-74619699 | None:intergenic | 35.0% | |
| AGTGCCTGAGAAATTTCAAA+AGG | - | chr5.1:74619116-74619135 | None:intergenic | 35.0% | |
| ATATTAGGCACAACTCATCT+GGG | + | chr5.1:74617901-74617920 | MS.gene065546:CDS | 35.0% | |
| ATATTTCGTCTCTCCTAATG+TGG | + | chr5.1:74619271-74619290 | MS.gene065546:CDS | 35.0% | |
| ATGCTATATTCGAAGTTGCA+AGG | + | chr5.1:74617868-74617887 | MS.gene065546:CDS | 35.0% | |
| CGAAAGAGAAATTGGAAAAC+TGG | + | chr5.1:74619154-74619173 | MS.gene065546:CDS | 35.0% | |
| CGAAGTCAATTTCATCATGT+GGG | + | chr5.1:74617703-74617722 | MS.gene065546:CDS | 35.0% | |
| CTATTAACAGGCAAATTGCT+AGG | + | chr5.1:74618588-74618607 | MS.gene065546:intron | 35.0% | |
| TACTTTAGGCAAGCGAAAAA+TGG | + | chr5.1:74619809-74619828 | MS.gene065546:CDS | 35.0% | |
| TCCTAATGTGGTCAAAATGA+AGG | + | chr5.1:74619283-74619302 | MS.gene065546:CDS | 35.0% | |
| TCGAAGTCAATTTCATCATG+TGG | + | chr5.1:74617702-74617721 | MS.gene065546:CDS | 35.0% | |
| TGACTGCATCAGCAAAATAA+TGG | - | chr5.1:74618475-74618494 | None:intergenic | 35.0% | |
| TGCAATACTAAACTACATCG+CGG | - | chr5.1:74618344-74618363 | None:intergenic | 35.0% | |
| TTATCAAACTCGCATTCAGA+AGG | + | chr5.1:74619515-74619534 | MS.gene065546:CDS | 35.0% | |
| ! | AAGTTCTGATTTGATGGAAG+TGG | + | chr5.1:74619473-74619492 | MS.gene065546:CDS | 35.0% |
| ! | ATTTTGCTGATGCAGTCATA+AGG | + | chr5.1:74618477-74618496 | MS.gene065546:intron | 35.0% |
| ! | CAAATCACCATTTTGTCAGT+TGG | - | chr5.1:74618884-74618903 | None:intergenic | 35.0% |
| ! | CAAGGAGTATGGAGAATATT+AGG | + | chr5.1:74617886-74617905 | MS.gene065546:CDS | 35.0% |
| ! | GGAAGAAAGTTCTGATTTGA+TGG | + | chr5.1:74619467-74619486 | MS.gene065546:CDS | 35.0% |
| ! | TAAAGGTTTTGCTTCTTGGT+TGG | + | chr5.1:74619855-74619874 | MS.gene065546:CDS | 35.0% |
| ! | TATTTTCACGTCATGGTACT+TGG | - | chr5.1:74619252-74619271 | None:intergenic | 35.0% |
| ! | TTTTGCCCAACAGAAAATGA+AGG | - | chr5.1:74617795-74617814 | None:intergenic | 35.0% |
| ! | TTTTGCTGATGCAGTCATAA+GGG | + | chr5.1:74618478-74618497 | MS.gene065546:intron | 35.0% |
| !! | AAAGAGTATCTGACATCAGA+AGG | + | chr5.1:74619435-74619454 | MS.gene065546:CDS | 35.0% |
| !! | ACCTTCATTTTGACCACATT+AGG | - | chr5.1:74619287-74619306 | None:intergenic | 35.0% |
| AACCTTTATGAAGAGGCAAG+AGG | + | chr5.1:74619558-74619577 | MS.gene065546:CDS | 40.0% | |
| AGCATTCCAGTAATCAATGC+AGG | + | chr5.1:74618275-74618294 | MS.gene065546:CDS | 40.0% | |
| ATCCAAGAGCTGCTTACTTT+AGG | + | chr5.1:74619795-74619814 | MS.gene065546:CDS | 40.0% | |
| ATTCGAAGTTGCAAGGAGTA+TGG | + | chr5.1:74617875-74617894 | MS.gene065546:CDS | 40.0% | |
| ATTTCATCATGTGGGCAGTT+TGG | + | chr5.1:74617711-74617730 | MS.gene065546:CDS | 40.0% | |
| CATTCCAGTAATCAATGCAG+GGG | + | chr5.1:74618277-74618296 | MS.gene065546:CDS | 40.0% | |
| CGCATTCAGAAGGAAAGATT+TGG | + | chr5.1:74619525-74619544 | MS.gene065546:CDS | 40.0% | |
| CGTAAAACAAAGTAGCCATG+AGG | - | chr5.1:74617947-74617966 | None:intergenic | 40.0% | |
| GCATTCCAGTAATCAATGCA+GGG | + | chr5.1:74618276-74618295 | MS.gene065546:CDS | 40.0% | |
| GGAATTAAAGTTGGGCTTGT+CGG | + | chr5.1:74619179-74619198 | MS.gene065546:CDS | 40.0% | |
| TCTCACAACCGAAAATGCTA+GGG | + | chr5.1:74618028-74618047 | MS.gene065546:CDS | 40.0% | |
| TGCCTGCTCAAACTATTAAC+AGG | + | chr5.1:74618576-74618595 | MS.gene065546:intron | 40.0% | |
| TGCCTGTTAATAGTTTGAGC+AGG | - | chr5.1:74618581-74618600 | None:intergenic | 40.0% | |
| TTACATGGCATGATGAGCTA+TGG | + | chr5.1:74619388-74619407 | MS.gene065546:intron | 40.0% | |
| TTCTCACAACCGAAAATGCT+AGG | + | chr5.1:74618027-74618046 | MS.gene065546:CDS | 40.0% | |
| ! | AGTGCACCTTCATTTTCTGT+TGG | + | chr5.1:74617786-74617805 | MS.gene065546:CDS | 40.0% |
| ! | ATTGACTTCGAATGACTCGA+TGG | - | chr5.1:74617693-74617712 | None:intergenic | 40.0% |
| ! | CGAAAACTCCCTAGCATTTT+CGG | - | chr5.1:74618039-74618058 | None:intergenic | 40.0% |
| ! | GTGCACCTTCATTTTCTGTT+GGG | + | chr5.1:74617787-74617806 | MS.gene065546:CDS | 40.0% |
| !! | AAATGAAAGCCTGGTTCTAG+TGG | - | chr5.1:74617976-74617995 | None:intergenic | 40.0% |
| !! | CTGCGTGTTGTTTATCAAAC+TGG | + | chr5.1:74617667-74617686 | MS.gene065546:CDS | 40.0% |
| !! | TGACTTGCTTTGTGAAGCAT+TGG | - | chr5.1:74618371-74618390 | None:intergenic | 40.0% |
| !!! | GGTGCCTTTTGAAATTTCTC+AGG | + | chr5.1:74619109-74619128 | MS.gene065546:intron | 40.0% |
| AATGCTTAAGGGCTACCTCA+TGG | + | chr5.1:74617929-74617948 | MS.gene065546:CDS | 45.0% | |
| AGACCTTGCTAATGGGAGAA+CGG | + | chr5.1:74619202-74619221 | MS.gene065546:CDS | 45.0% | |
| ATCTGGGAGCCAAATGCTTA+AGG | + | chr5.1:74617917-74617936 | MS.gene065546:CDS | 45.0% | |
| GAACTTACCTCGTCTAGTCT+TGG | - | chr5.1:74619651-74619670 | None:intergenic | 45.0% | |
| GTATCTGACATCAGAAGGAG+TGG | + | chr5.1:74619440-74619459 | MS.gene065546:CDS | 45.0% | |
| TCTGGGAGCCAAATGCTTAA+GGG | + | chr5.1:74617918-74617937 | MS.gene065546:CDS | 45.0% | |
| TGAGGTAGCCCTTAAGCATT+TGG | - | chr5.1:74617929-74617948 | None:intergenic | 45.0% | |
| TGCCTAAAGTAAGCAGCTCT+TGG | - | chr5.1:74619800-74619819 | None:intergenic | 45.0% | |
| TGCCTCTTGCCTCTTCATAA+AGG | - | chr5.1:74619563-74619582 | None:intergenic | 45.0% | |
| TTGTCGGAGACCTTGCTAAT+GGG | + | chr5.1:74619195-74619214 | MS.gene065546:CDS | 45.0% | |
| ! | ATCACCACCTAGTCTTCTCA+TGG | - | chr5.1:74618006-74618025 | None:intergenic | 45.0% |
| ! | GAGTTTTCGTCTGCAGCTAA+AGG | + | chr5.1:74618050-74618069 | MS.gene065546:CDS | 45.0% |
| CCAGTAATCAATGCAGGGGA+TGG | + | chr5.1:74618281-74618300 | MS.gene065546:CDS | 50.0% | |
| CTTGTCGGAGACCTTGCTAA+TGG | + | chr5.1:74619194-74619213 | MS.gene065546:CDS | 50.0% | |
| GAACCGTTCTCCCATTAGCA+AGG | - | chr5.1:74619208-74619227 | None:intergenic | 50.0% | |
| GACATCAGAAGGAGTGGAGT+GGG | + | chr5.1:74619446-74619465 | MS.gene065546:CDS | 50.0% | |
| GAGTCTGCCATGAGAAGACT+AGG | + | chr5.1:74617996-74618015 | MS.gene065546:CDS | 50.0% | |
| GGCAGACTCAAATGAAAGCC+TGG | - | chr5.1:74617985-74618004 | None:intergenic | 50.0% | |
| TCTGCCATGAGAAGACTAGG+TGG | + | chr5.1:74617999-74618018 | MS.gene065546:CDS | 50.0% | |
| TGACATCAGAAGGAGTGGAG+TGG | + | chr5.1:74619445-74619464 | MS.gene065546:CDS | 50.0% | |
| ! | GTCTTGCGGCACTTTGAAAG+TGG | + | chr5.1:74618224-74618243 | MS.gene065546:CDS | 50.0% |
| ! | TGTGGGCAGTTTGGAGTTTC+TGG | + | chr5.1:74617720-74617739 | MS.gene065546:CDS | 50.0% |
| !! | ACCTCGTCTAGTCTTGGAAG+AGG | - | chr5.1:74619645-74619664 | None:intergenic | 50.0% |
| !! | CCATCCCCTGCATTGATTAC+TGG | - | chr5.1:74618284-74618303 | None:intergenic | 50.0% |
| !! | CCTCGTCTAGTCTTGGAAGA+GGG | - | chr5.1:74619644-74619663 | None:intergenic | 50.0% |
| !! | GAAAGCCTGGTTCTAGTGGA+CGG | - | chr5.1:74617972-74617991 | None:intergenic | 50.0% |
| AATCAATGCAGGGGATGGCC+CGG | + | chr5.1:74618286-74618305 | MS.gene065546:CDS | 55.0% | |
| ACCTGAGTAGGATGCTGTCC+CGG | - | chr5.1:74618308-74618327 | None:intergenic | 55.0% | |
| CCCTCTTCCAAGACTAGACG+AGG | + | chr5.1:74619641-74619660 | MS.gene065546:CDS | 55.0% | |
| GCTAAAGGAGAGACGCTCGA+AGG | + | chr5.1:74618065-74618084 | MS.gene065546:CDS | 55.0% | |
| ACGAGCCGTCCACTAGAACC+AGG | + | chr5.1:74617964-74617983 | MS.gene065546:CDS | 60.0% | |
| ATCAATGCAGGGGATGGCCC+GGG | + | chr5.1:74618287-74618306 | MS.gene065546:CDS | 60.0% | |
| CCTGAGTAGGATGCTGTCCC+GGG | - | chr5.1:74618307-74618326 | None:intergenic | 60.0% | |
| CCCGGGACAGCATCCTACTC+AGG | + | chr5.1:74618304-74618323 | MS.gene065546:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 74617591 | 74619880 | 74617591 | ID=MS.gene065546 |
| chr5.1 | mRNA | 74617591 | 74619880 | 74617591 | ID=MS.gene065546.t1;Parent=MS.gene065546 |
| chr5.1 | exon | 74617591 | 74618086 | 74617591 | ID=MS.gene065546.t1.exon1;Parent=MS.gene065546.t1 |
| chr5.1 | CDS | 74617591 | 74618086 | 74617591 | ID=cds.MS.gene065546.t1;Parent=MS.gene065546.t1 |
| chr5.1 | exon | 74618186 | 74618325 | 74618186 | ID=MS.gene065546.t1.exon2;Parent=MS.gene065546.t1 |
| chr5.1 | CDS | 74618186 | 74618325 | 74618186 | ID=cds.MS.gene065546.t1;Parent=MS.gene065546.t1 |
| chr5.1 | exon | 74619131 | 74619304 | 74619131 | ID=MS.gene065546.t1.exon3;Parent=MS.gene065546.t1 |
| chr5.1 | CDS | 74619131 | 74619304 | 74619131 | ID=cds.MS.gene065546.t1;Parent=MS.gene065546.t1 |
| chr5.1 | exon | 74619426 | 74619662 | 74619426 | ID=MS.gene065546.t1.exon4;Parent=MS.gene065546.t1 |
| chr5.1 | CDS | 74619426 | 74619662 | 74619426 | ID=cds.MS.gene065546.t1;Parent=MS.gene065546.t1 |
| chr5.1 | exon | 74619773 | 74619880 | 74619773 | ID=MS.gene065546.t1.exon5;Parent=MS.gene065546.t1 |
| chr5.1 | CDS | 74619773 | 74619880 | 74619773 | ID=cds.MS.gene065546.t1;Parent=MS.gene065546.t1 |
| Gene Sequence |
| Protein sequence |
