Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06584.t1 | AES72666.2 | 98.3 | 360 | 6 | 0 | 4 | 363 | 84 | 443 | 2.40E-210 | 741.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06584.t1 | O81916 | 60.2 | 357 | 140 | 2 | 4 | 359 | 129 | 484 | 3.4e-128 | 459.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06584.t1 | G7J9M4 | 98.3 | 360 | 6 | 0 | 4 | 363 | 84 | 443 | 1.8e-210 | 741.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057271 | MS.gene06584 | 0.90063 | 6.04E-78 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06584.t1 | MTR_3g093070 | 98.061 | 361 | 7 | 0 | 3 | 363 | 83 | 443 | 0.0 | 740 |
| MS.gene06584.t1 | MTR_3g093070 | 96.986 | 365 | 7 | 1 | 3 | 363 | 92 | 456 | 0.0 | 735 |
| MS.gene06584.t1 | MTR_5g068820 | 78.571 | 364 | 72 | 2 | 3 | 360 | 79 | 442 | 0.0 | 577 |
| MS.gene06584.t1 | MTR_5g068820 | 78.571 | 364 | 72 | 2 | 3 | 360 | 6 | 369 | 0.0 | 577 |
| MS.gene06584.t1 | MTR_5g068820 | 80.496 | 282 | 55 | 0 | 3 | 284 | 79 | 360 | 1.35e-172 | 485 |
| MS.gene06584.t1 | MTR_8g023830 | 63.912 | 363 | 127 | 2 | 3 | 361 | 104 | 466 | 1.30e-169 | 481 |
| MS.gene06584.t1 | MTR_8g023830 | 65.614 | 285 | 94 | 2 | 3 | 283 | 104 | 388 | 4.49e-134 | 388 |
| MS.gene06584.t1 | MTR_8g023830 | 68.127 | 251 | 76 | 2 | 3 | 249 | 104 | 354 | 7.33e-121 | 353 |
| MS.gene06584.t1 | MTR_7g111640 | 91.837 | 49 | 4 | 0 | 214 | 262 | 22 | 70 | 1.07e-25 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06584.t1 | AT5G54130 | 75.414 | 362 | 78 | 4 | 3 | 362 | 83 | 435 | 0.0 | 563 |
| MS.gene06584.t1 | AT1G02270 | 60.056 | 358 | 141 | 2 | 3 | 359 | 128 | 484 | 7.08e-160 | 457 |
| MS.gene06584.t1 | AT1G02270 | 59.429 | 350 | 140 | 2 | 11 | 359 | 1 | 349 | 7.19e-156 | 442 |
| MS.gene06584.t1 | AT5G54130 | 76.494 | 251 | 55 | 2 | 3 | 252 | 83 | 330 | 1.10e-141 | 406 |
| MS.gene06584.t1 | AT5G54130 | 75.697 | 251 | 55 | 3 | 3 | 252 | 83 | 328 | 4.57e-138 | 397 |
Find 69 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATTGTATTACGTATTC+TGG | 0.231159 | 3.3:-77669648 | MS.gene06584:CDS |
| TCTTTGCAGCTCAATTTAAT+TGG | 0.269178 | 3.3:-77669503 | MS.gene06584:intron |
| AGTTGGAGTGAAGCAGTATT+TGG | 0.273393 | 3.3:-77669933 | MS.gene06584:CDS |
| TGTGGTTGCAGCAGCAAATA+TGG | 0.287040 | 3.3:-77668894 | MS.gene06584:intron |
| GTGATGCATTCGCATTTCTA+AGG | 0.292926 | 3.3:-77669680 | MS.gene06584:CDS |
| GTTGAGTGAGGAAGAGATAA+AGG | 0.304033 | 3.3:-77669468 | MS.gene06584:CDS |
| AATGGCGAAACGGTGAAATT+AGG | 0.348821 | 3.3:-77670567 | MS.gene06584:CDS |
| AAGAGACGACAACAAGAATA+AGG | 0.370878 | 3.3:-77668851 | MS.gene06584:CDS |
| AATTACCCGCATAGCATGAT+TGG | 0.373854 | 3.3:+77670333 | None:intergenic |
| GAGTTGCACTTCAACGATAT+TGG | 0.376186 | 3.3:-77670640 | MS.gene06584:CDS |
| TGGGAGCACGGCATCCTTAT+CGG | 0.379110 | 3.3:+77668679 | None:intergenic |
| TCTTGACTATAAAGAATTCC+TGG | 0.382013 | 3.3:-77669408 | MS.gene06584:intron |
| GACGTTCAAGAACAAACAAT+TGG | 0.391637 | 3.3:-77668808 | MS.gene06584:CDS |
| CATTGTGTCAGCAAATCATC+TGG | 0.415046 | 3.3:+77668659 | None:intergenic |
| CGTAATACAATCTTCATTCT+CGG | 0.415852 | 3.3:+77669656 | None:intergenic |
| GGTTAGTCACCGCAATCATC+GGG | 0.427328 | 3.3:-77670024 | MS.gene06584:CDS |
| ATCTCTTGTACGATTGAAAC+AGG | 0.442832 | 3.3:-77670491 | MS.gene06584:intron |
| TTCCCTCCTGAGGTGGAGAA+AGG | 0.462650 | 3.3:-77668760 | MS.gene06584:CDS |
| CCGCATAGCATGATTGGCAT+TGG | 0.463891 | 3.3:+77670339 | None:intergenic |
| TCAGAAAGGGAGTAGTCTTC+CGG | 0.466059 | 3.3:+77668730 | None:intergenic |
| AGGAAGAGATAAAGGAGTTG+TGG | 0.467760 | 3.3:-77669460 | MS.gene06584:CDS |
| AGCAGTATTTGGCATGTTCA+AGG | 0.480053 | 3.3:-77669922 | MS.gene06584:intron |
| AAGAATAAGGAGCAGGAAGA+TGG | 0.483958 | 3.3:-77668838 | MS.gene06584:CDS |
| GGGTTAGTCACCGCAATCAT+CGG | 0.484438 | 3.3:-77670025 | MS.gene06584:CDS |
| CAAGCTGACATAGATGGAAA+TGG | 0.487916 | 3.3:-77669434 | MS.gene06584:CDS |
| ATACAAAACCCTGGGACCTC+AGG | 0.492448 | 3.3:+77670191 | None:intergenic |
| CTGAGGTGGAGAAAGGTAGA+TGG | 0.494182 | 3.3:-77668753 | MS.gene06584:CDS |
| GAAAATTACTAAAAGCAAGT+TGG | 0.494595 | 3.3:-77669950 | MS.gene06584:CDS |
| CATCTACCTTTCTCCACCTC+AGG | 0.495969 | 3.3:+77668754 | None:intergenic |
| TACAAATTCCTGAGGTCCCA+GGG | 0.496535 | 3.3:-77670199 | MS.gene06584:CDS |
| GGTTATGTTAGTTTCAAACT+TGG | 0.498826 | 3.3:-77671083 | MS.gene06584:CDS |
| TTACAAATTCCTGAGGTCCC+AGG | 0.501386 | 3.3:-77670200 | MS.gene06584:CDS |
| GAAAAGAGACTTGGAGATGC+TGG | 0.501756 | 3.3:-77671104 | MS.gene06584:CDS |
| TTTCTGTGAAGCACTTCGAC+AGG | 0.502170 | 3.3:-77669625 | MS.gene06584:intron |
| TTGCATCGTGAGGAAATAGA+AGG | 0.517561 | 3.3:+77670518 | None:intergenic |
| TGATTGGCATTGGCTTCAGT+TGG | 0.518480 | 3.3:+77670349 | None:intergenic |
| CAATGCCAATCATGCTATGC+GGG | 0.524290 | 3.3:-77670338 | MS.gene06584:intron |
| GGAAGAGATAAAGGAGTTGT+GGG | 0.527364 | 3.3:-77669459 | MS.gene06584:CDS |
| AAGTCGAGCATGATCAGAAA+GGG | 0.528485 | 3.3:+77668717 | None:intergenic |
| TGATGCATTCGCATTTCTAA+GGG | 0.533037 | 3.3:-77669679 | MS.gene06584:CDS |
| TTTGAACGTAGAATGAGAAC+GGG | 0.538447 | 3.3:-77671610 | None:intergenic |
| CATTTCCATCTATGTCAGCT+TGG | 0.539383 | 3.3:+77669435 | None:intergenic |
| TAAGTCGAGCATGATCAGAA+AGG | 0.539993 | 3.3:+77668716 | None:intergenic |
| TGGGTCCAAGCTGACATAGA+TGG | 0.540867 | 3.3:-77669440 | MS.gene06584:CDS |
| CGACAACAAGAATAAGGAGC+AGG | 0.549044 | 3.3:-77668845 | MS.gene06584:CDS |
| CACTGATGCAGATGCTGACA+AGG | 0.551387 | 3.3:-77670143 | MS.gene06584:intron |
| AATTTGTATGAAAAGAGACT+TGG | 0.556763 | 3.3:-77671113 | MS.gene06584:CDS |
| TTGTTTCTCAGTGACTGGAA+TGG | 0.560382 | 3.3:-77670241 | MS.gene06584:intron |
| GACTGGAATGGAAGCAAGCG+TGG | 0.563929 | 3.3:-77670229 | MS.gene06584:CDS |
| GCGAAACGGTGAAATTAGGC+AGG | 0.564680 | 3.3:-77670563 | MS.gene06584:CDS |
| ATGTTAGTTTCAAACTTGGA+AGG | 0.564896 | 3.3:-77671079 | MS.gene06584:CDS |
| AGGACGAACAACCGTGGAGA+TGG | 0.568957 | 3.3:-77671059 | MS.gene06584:intron |
| CTACCTTTCTCCACCTCAGG+AGG | 0.577262 | 3.3:+77668757 | None:intergenic |
| CAGCAAATCATCTGGGAGCA+CGG | 0.578468 | 3.3:+77668667 | None:intergenic |
| ATATATTTCCCCGATGATTG+CGG | 0.591841 | 3.3:+77670015 | None:intergenic |
| CATCGTGAGGAAATAGAAGG+TGG | 0.593034 | 3.3:+77670521 | None:intergenic |
| CGTAAGATGATACAAAACCC+TGG | 0.612335 | 3.3:+77670182 | None:intergenic |
| GGTGGAGAAAGGTAGATGGC+CGG | 0.616375 | 3.3:-77668749 | MS.gene06584:CDS |
| GTAAGATGATACAAAACCCT+GGG | 0.620564 | 3.3:+77670183 | None:intergenic |
| TACCTTTCTCCACCTCAGGA+GGG | 0.639590 | 3.3:+77668758 | None:intergenic |
| GACATGTTTACAAATTCCTG+AGG | 0.641651 | 3.3:-77670207 | MS.gene06584:CDS |
| ATTGTGTCAGCAAATCATCT+GGG | 0.646731 | 3.3:+77668660 | None:intergenic |
| AGAGATAGCGTTGCATCGTG+AGG | 0.646885 | 3.3:+77670508 | None:intergenic |
| TCATTCTCATGAGTTGAGTG+AGG | 0.655974 | 3.3:-77669480 | MS.gene06584:CDS |
| ATCGTGAGGAAATAGAAGGT+GGG | 0.667884 | 3.3:+77670522 | None:intergenic |
| CTTGGAAGGACGAACAACCG+TGG | 0.669893 | 3.3:-77671065 | MS.gene06584:CDS |
| CCAATGCCAATCATGCTATG+CGG | 0.686315 | 3.3:-77670339 | MS.gene06584:CDS |
| GAACGCGCATACCATCTCCA+CGG | 0.721216 | 3.3:+77671048 | None:intergenic |
| GTTAGTCACCGCAATCATCG+GGG | 0.740550 | 3.3:-77670023 | MS.gene06584:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTAAACATGTTATA+TGG | + | chr3.3:77669361-77669380 | None:intergenic | 10.0% |
| !! | ATGATTTAAAAATTGTCATT+CGG | - | chr3.3:77671230-77671249 | MS.gene06584:intron | 15.0% |
| !! | GTTTAAAAAATATTTACTGA+GGG | - | chr3.3:77669369-77669388 | MS.gene06584:intron | 15.0% |
| !! | TGTTTAAAAAATATTTACTG+AGG | - | chr3.3:77669368-77669387 | MS.gene06584:intron | 15.0% |
| !! | TTGTAATAATGTATTGAATT+GGG | - | chr3.3:77669323-77669342 | MS.gene06584:intron | 15.0% |
| !! | TTTGTAATAATGTATTGAAT+TGG | - | chr3.3:77669322-77669341 | MS.gene06584:intron | 15.0% |
| !!! | AAAAATTTCTCTATTTTTTC+AGG | - | chr3.3:77670531-77670550 | MS.gene06584:CDS | 15.0% |
| !!! | CTTTAACATTTTCAATTATA+AGG | - | chr3.3:77669602-77669621 | MS.gene06584:intron | 15.0% |
| !!! | TAATTTATAGAATTTTCTAC+TGG | - | chr3.3:77671153-77671172 | MS.gene06584:intron | 15.0% |
| !!! | TTTCTTTAGAATTTTTCATT+TGG | - | chr3.3:77670158-77670177 | MS.gene06584:CDS | 15.0% |
| !! | AAAAATCCATGTGTTTATAA+GGG | - | chr3.3:77670726-77670745 | MS.gene06584:intron | 20.0% |
| !! | AAACAAAAACAACAAAACAA+AGG | + | chr3.3:77668857-77668876 | None:intergenic | 20.0% |
| !! | ATAGAATAAGTATAGATGAT+TGG | + | chr3.3:77670203-77670222 | None:intergenic | 20.0% |
| !! | TAAAAAATTTCTGAATAGAG+TGG | - | chr3.3:77671258-77671277 | MS.gene06584:intron | 20.0% |
| !! | TCAGTAAAAACAATTCTAAA+TGG | + | chr3.3:77669398-77669417 | None:intergenic | 20.0% |
| !!! | ATGACTTTTACATGTATATA+AGG | - | chr3.3:77670410-77670429 | MS.gene06584:intron | 20.0% |
| !!! | ATTTAGAATTGTTTTTACTG+AGG | - | chr3.3:77669397-77669416 | MS.gene06584:intron | 20.0% |
| ! | AAAAAACCCTTATAAACACA+TGG | + | chr3.3:77670735-77670754 | None:intergenic | 25.0% |
| ! | AACATTTAAATGTGGTATAC+AGG | - | chr3.3:77669802-77669821 | MS.gene06584:intron | 25.0% |
| ! | AATTTGTATGAAAAGAGACT+TGG | - | chr3.3:77669151-77669170 | MS.gene06584:intron | 25.0% |
| ! | ATTTAAAAATTGTCATTCGG+TGG | - | chr3.3:77671233-77671252 | MS.gene06584:intron | 25.0% |
| ! | GAAAAATCCATGTGTTTATA+AGG | - | chr3.3:77670725-77670744 | MS.gene06584:intron | 25.0% |
| ! | GAAAATTACTAAAAGCAAGT+TGG | - | chr3.3:77670314-77670333 | MS.gene06584:intron | 25.0% |
| ! | GGTATCAAAACATTTAAATG+TGG | - | chr3.3:77669794-77669813 | MS.gene06584:intron | 25.0% |
| ! | GTGTTCTACATTTCTATTAT+TGG | - | chr3.3:77669063-77669082 | MS.gene06584:intron | 25.0% |
| ! | TATTTGTGATGATTGAAAAC+AGG | - | chr3.3:77668894-77668913 | MS.gene06584:intron | 25.0% |
| ! | TCAATCATCACAAATATTTG+AGG | + | chr3.3:77668890-77668909 | None:intergenic | 25.0% |
| ! | TTAAAATTTCATCTTGTTGC+AGG | - | chr3.3:77669849-77669868 | MS.gene06584:intron | 25.0% |
| !! | AGTAATTTTCGATATTTGTC+AGG | + | chr3.3:77670304-77670323 | None:intergenic | 25.0% |
| !! | ATTTTGCTAAAATATCCCTT+TGG | - | chr3.3:77669246-77669265 | MS.gene06584:intron | 25.0% |
| !! | GCATAGATATAATTTTTCTC+AGG | + | chr3.3:77670959-77670978 | None:intergenic | 25.0% |
| !! | TAGTCTTTCCATTTTCAAAA+TGG | - | chr3.3:77669679-77669698 | MS.gene06584:CDS | 25.0% |
| !! | TTTAAGAAAAAGAAGTACAC+TGG | + | chr3.3:77669973-77669992 | None:intergenic | 25.0% |
| !!! | ATAGCTTGTTTGTTAAATCA+TGG | - | chr3.3:77671336-77671355 | MS.gene06584:intron | 25.0% |
| !!! | CTGCTTATTTGTTTTGATTA+AGG | - | chr3.3:77669029-77669048 | MS.gene06584:intron | 25.0% |
| !!! | GAAAAATGCTTTTAGAGTTT+AGG | - | chr3.3:77669419-77669438 | MS.gene06584:CDS | 25.0% |
| !!! | TATGTGCTGTTGATTTTATT+TGG | - | chr3.3:77670269-77670288 | MS.gene06584:intron | 25.0% |
| !!! | TTTTTGTTTTTGTTGAGCAA+TGG | - | chr3.3:77671283-77671302 | MS.gene06584:intron | 25.0% |
| AATGTATTGAATTGGGCAAA+GGG | - | chr3.3:77669330-77669349 | MS.gene06584:intron | 30.0% | |
| ACATTTCTATTATTGGCCAA+GGG | - | chr3.3:77669070-77669089 | MS.gene06584:intron | 30.0% | |
| ATGAATTTGTGACAACCAAA+GGG | + | chr3.3:77669264-77669283 | None:intergenic | 30.0% | |
| ATTAGTATAGGAAACACATG+TGG | + | chr3.3:77670441-77670460 | None:intergenic | 30.0% | |
| CGTAATACAATCTTCATTCT+CGG | + | chr3.3:77670611-77670630 | None:intergenic | 30.0% | |
| CTAATCACACAGTTAATACT+GGG | + | chr3.3:77670670-77670689 | None:intergenic | 30.0% | |
| CTAATGTGTTGAATTTGTGA+AGG | - | chr3.3:77669099-77669118 | MS.gene06584:intron | 30.0% | |
| GAAGATTGTATTACGTATTC+TGG | - | chr3.3:77670616-77670635 | MS.gene06584:CDS | 30.0% | |
| GACAGTTCACATATTAGTAT+AGG | + | chr3.3:77670453-77670472 | None:intergenic | 30.0% | |
| GCAGTTTATGTCTAGTTAAA+TGG | + | chr3.3:77671105-77671124 | None:intergenic | 30.0% | |
| GTCTTCTATTATTTGTCTTC+AGG | - | chr3.3:77668999-77669018 | MS.gene06584:intron | 30.0% | |
| TAATGTATTGAATTGGGCAA+AGG | - | chr3.3:77669329-77669348 | MS.gene06584:intron | 30.0% | |
| TACATTTCTATTATTGGCCA+AGG | - | chr3.3:77669069-77669088 | MS.gene06584:intron | 30.0% | |
| TATTACAAATCCATAACGTC+CGG | + | chr3.3:77669311-77669330 | None:intergenic | 30.0% | |
| TCATTGATGCGTTTGTAAAT+AGG | + | chr3.3:77668801-77668820 | None:intergenic | 30.0% | |
| TCTGATATAGTGTTATCCTT+GGG | - | chr3.3:77669540-77669559 | MS.gene06584:intron | 30.0% | |
| TCTTGACTATAAAGAATTCC+TGG | - | chr3.3:77670856-77670875 | MS.gene06584:intron | 30.0% | |
| TCTTTGCAGCTCAATTTAAT+TGG | - | chr3.3:77670761-77670780 | MS.gene06584:intron | 30.0% | |
| TGTAAAAGTCATAACGAAGA+TGG | + | chr3.3:77670402-77670421 | None:intergenic | 30.0% | |
| TTAGACCACTCATGATTAAA+TGG | + | chr3.3:77671185-77671204 | None:intergenic | 30.0% | |
| TTATATGTCAAGGGTTACAT+TGG | + | chr3.3:77669448-77669467 | None:intergenic | 30.0% | |
| TTCAAGTGAAATACTTTACC+AGG | + | chr3.3:77670877-77670896 | None:intergenic | 30.0% | |
| TTCTGATATAGTGTTATCCT+TGG | - | chr3.3:77669539-77669558 | MS.gene06584:intron | 30.0% | |
| ! | ATCATGGTCTTGAAATTATG+TGG | - | chr3.3:77671352-77671371 | MS.gene06584:intron | 30.0% |
| ! | ATGTTAGTTTCAAACTTGGA+AGG | - | chr3.3:77669185-77669204 | MS.gene06584:intron | 30.0% |
| ! | ATTCTGGTTGTTATATGTCA+AGG | + | chr3.3:77669458-77669477 | None:intergenic | 30.0% |
| ! | ATTTGCCATTTAATCATGAG+TGG | - | chr3.3:77671177-77671196 | MS.gene06584:intron | 30.0% |
| ! | GGTTATGTTAGTTTCAAACT+TGG | - | chr3.3:77669181-77669200 | MS.gene06584:intron | 30.0% |
| ! | TGAATTTGTGAAGGAGTTTT+GGG | - | chr3.3:77669108-77669127 | MS.gene06584:intron | 30.0% |
| ! | TTCTGGTTGTTATATGTCAA+GGG | + | chr3.3:77669457-77669476 | None:intergenic | 30.0% |
| ! | TTGAATTTGTGAAGGAGTTT+TGG | - | chr3.3:77669107-77669126 | MS.gene06584:intron | 30.0% |
| !! | GCTTTTGGAAAATGTAATTC+TGG | + | chr3.3:77669474-77669493 | None:intergenic | 30.0% |
| !!! | ACAGGCATTTTTTAATGACT+AGG | - | chr3.3:77669820-77669839 | MS.gene06584:intron | 30.0% |
| !!! | GGGATATTTTAGCAAAATTG+AGG | + | chr3.3:77669244-77669263 | None:intergenic | 30.0% |
| !!! | TATTTTTTCAGGATCTAGTG+AGG | - | chr3.3:77670542-77670561 | MS.gene06584:CDS | 30.0% |
| AACTAAAGATTGCACCATAG+TGG | + | chr3.3:77670487-77670506 | None:intergenic | 35.0% | |
| AAGAGACGACAACAAGAATA+AGG | - | chr3.3:77671413-77671432 | MS.gene06584:intron | 35.0% | |
| AGAGTGACTATAGAGCATAT+TGG | - | chr3.3:77668932-77668951 | MS.gene06584:intron | 35.0% | |
| AGATAAGCATGTGCGTTAAA+TGG | + | chr3.3:77670705-77670724 | None:intergenic | 35.0% | |
| AGGAGCAAGAATGTTAAAAG+TGG | + | chr3.3:77668781-77668800 | None:intergenic | 35.0% | |
| ATATATTTCCCCGATGATTG+CGG | + | chr3.3:77670252-77670271 | None:intergenic | 35.0% | |
| ATCTCTTGTACGATTGAAAC+AGG | - | chr3.3:77669773-77669792 | MS.gene06584:intron | 35.0% | |
| ATGTATTGAATTGGGCAAAG+GGG | - | chr3.3:77669331-77669350 | MS.gene06584:intron | 35.0% | |
| CAAAACACGTCACATGTAAT+TGG | - | chr3.3:77671052-77671071 | MS.gene06584:intron | 35.0% | |
| CTATATAATGTCGATGCAGT+GGG | - | chr3.3:77670219-77670238 | MS.gene06584:CDS | 35.0% | |
| GACATGTTTACAAATTCCTG+AGG | - | chr3.3:77670057-77670076 | MS.gene06584:intron | 35.0% | |
| GACGTTCAAGAACAAACAAT+TGG | - | chr3.3:77671456-77671475 | MS.gene06584:intron | 35.0% | |
| GATGAATTTGTGACAACCAA+AGG | + | chr3.3:77669265-77669284 | None:intergenic | 35.0% | |
| GCTAATCACACAGTTAATAC+TGG | + | chr3.3:77670671-77670690 | None:intergenic | 35.0% | |
| GGAATCATAGGATATTGGAT+TGG | - | chr3.3:77668962-77668981 | MS.gene06584:intron | 35.0% | |
| GTAAGATGATACAAAACCCT+GGG | + | chr3.3:77670084-77670103 | None:intergenic | 35.0% | |
| TCTATATAATGTCGATGCAG+TGG | - | chr3.3:77670218-77670237 | MS.gene06584:CDS | 35.0% | |
| TCTATGCAATCAATGACTAG+AGG | - | chr3.3:77670972-77670991 | MS.gene06584:intron | 35.0% | |
| TGACTATAGAGCATATTGGT+TGG | - | chr3.3:77668936-77668955 | MS.gene06584:intron | 35.0% | |
| TGATGCATTCGCATTTCTAA+GGG | - | chr3.3:77670585-77670604 | MS.gene06584:CDS | 35.0% | |
| TTACAAACGCATCAATGATG+AGG | - | chr3.3:77668803-77668822 | MS.gene06584:CDS | 35.0% | |
| TTATCCTTGGGTTACATAAC+AGG | - | chr3.3:77669552-77669571 | MS.gene06584:intron | 35.0% | |
| ! | CCATTTTCAAAATGGCGAAA+CGG | - | chr3.3:77669687-77669706 | MS.gene06584:CDS | 35.0% |
| ! | TGTCATCATATTTTTCACGC+CGG | - | chr3.3:77669289-77669308 | MS.gene06584:intron | 35.0% |
| !! | CCAAAAGCATGCTTTTGTTT+AGG | - | chr3.3:77669486-77669505 | MS.gene06584:CDS | 35.0% |
| !! | CCTAAACAAAAGCATGCTTT+TGG | + | chr3.3:77669489-77669508 | None:intergenic | 35.0% |
| !! | TGGTGGATTAGTATCGTTTA+AGG | + | chr3.3:77668739-77668758 | None:intergenic | 35.0% |
| AAAGCATGGGAAGGATTTCA+AGG | - | chr3.3:77668688-77668707 | MS.gene06584:CDS | 40.0% | |
| AAAGTGGTGCAAGTAATGCA+AGG | + | chr3.3:77668765-77668784 | None:intergenic | 40.0% | |
| AAGAATAAGGAGCAGGAAGA+TGG | - | chr3.3:77671426-77671445 | MS.gene06584:intron | 40.0% | |
| AAGACCTGTTATGTAACCCA+AGG | + | chr3.3:77669559-77669578 | None:intergenic | 40.0% | |
| AAGTCGAGCATGATCAGAAA+GGG | + | chr3.3:77671550-77671569 | None:intergenic | 40.0% | |
| AATGGCGAAACGGTGAAATT+AGG | - | chr3.3:77669697-77669716 | MS.gene06584:CDS | 40.0% | |
| AATTACCCGCATAGCATGAT+TGG | + | chr3.3:77669934-77669953 | None:intergenic | 40.0% | |
| AGCAGTATTTGGCATGTTCA+AGG | - | chr3.3:77670342-77670361 | MS.gene06584:CDS | 40.0% | |
| AGGAAGAGATAAAGGAGTTG+TGG | - | chr3.3:77670804-77670823 | MS.gene06584:intron | 40.0% | |
| AGTTGGAGTGAAGCAGTATT+TGG | - | chr3.3:77670331-77670350 | MS.gene06584:intron | 40.0% | |
| ATCGTGAGGAAATAGAAGGT+GGG | + | chr3.3:77669745-77669764 | None:intergenic | 40.0% | |
| ATGGGAAGGATTTCAAGGAT+TGG | - | chr3.3:77668693-77668712 | MS.gene06584:CDS | 40.0% | |
| ATTGGTTGGCAAGGAATCAT+AGG | - | chr3.3:77668950-77668969 | MS.gene06584:intron | 40.0% | |
| CAAGCTGACATAGATGGAAA+TGG | - | chr3.3:77670830-77670849 | MS.gene06584:intron | 40.0% | |
| CATTTCCATCTATGTCAGCT+TGG | + | chr3.3:77670832-77670851 | None:intergenic | 40.0% | |
| CGTAAGATGATACAAAACCC+TGG | + | chr3.3:77670085-77670104 | None:intergenic | 40.0% | |
| GAGTTGCACTTCAACGATAT+TGG | - | chr3.3:77669624-77669643 | MS.gene06584:intron | 40.0% | |
| GGAAGAGATAAAGGAGTTGT+GGG | - | chr3.3:77670805-77670824 | MS.gene06584:intron | 40.0% | |
| GGCAAGGAATCATAGGATAT+TGG | - | chr3.3:77668957-77668976 | MS.gene06584:intron | 40.0% | |
| GTCTACAATGATGTCCACTA+TGG | - | chr3.3:77670470-77670489 | MS.gene06584:intron | 40.0% | |
| GTGATGCATTCGCATTTCTA+AGG | - | chr3.3:77670584-77670603 | MS.gene06584:CDS | 40.0% | |
| GTTGAGTGAGGAAGAGATAA+AGG | - | chr3.3:77670796-77670815 | MS.gene06584:intron | 40.0% | |
| TAAGTCGAGCATGATCAGAA+AGG | + | chr3.3:77671551-77671570 | None:intergenic | 40.0% | |
| TCGTAGTGCTTATCTCTACA+AGG | - | chr3.3:77671013-77671032 | MS.gene06584:intron | 40.0% | |
| TGTATTGAATTGGGCAAAGG+GGG | - | chr3.3:77669332-77669351 | MS.gene06584:intron | 40.0% | |
| TTGCATCGTGAGGAAATAGA+AGG | + | chr3.3:77669749-77669768 | None:intergenic | 40.0% | |
| ! | ACAGTTTGTTTCTCAGTGAC+TGG | - | chr3.3:77670018-77670037 | MS.gene06584:CDS | 40.0% |
| ! | ATAGAGCATATTGGTTGGCA+AGG | - | chr3.3:77668941-77668960 | MS.gene06584:intron | 40.0% |
| ! | CTGTTGTGTTTTCACCGATA+AGG | - | chr3.3:77671571-77671590 | MS.gene06584:intron | 40.0% |
| ! | TCATTCTCATGAGTTGAGTG+AGG | - | chr3.3:77670784-77670803 | MS.gene06584:intron | 40.0% |
| ! | TGGTGCAATCTTTAGTTTCG+TGG | - | chr3.3:77670490-77670509 | MS.gene06584:intron | 40.0% |
| ! | TTGTTTCTCAGTGACTGGAA+TGG | - | chr3.3:77670023-77670042 | MS.gene06584:CDS | 40.0% |
| !! | CCGTTTCGCCATTTTGAAAA+TGG | + | chr3.3:77669690-77669709 | None:intergenic | 40.0% |
| !!! | TTTGTGAAGGAGTTTTGGGT+AGG | - | chr3.3:77669112-77669131 | MS.gene06584:intron | 40.0% |
| AGTCACTCTCTCGACAAGTT+GGG | + | chr3.3:77668921-77668940 | None:intergenic | 45.0% | |
| CAAGTAATGCAAGGTTGTGG+TGG | + | chr3.3:77668756-77668775 | None:intergenic | 45.0% | |
| CAATGCCAATCATGCTATGC+GGG | - | chr3.3:77669926-77669945 | MS.gene06584:CDS | 45.0% | |
| CATCGTGAGGAAATAGAAGG+TGG | + | chr3.3:77669746-77669765 | None:intergenic | 45.0% | |
| CCAATGCCAATCATGCTATG+CGG | - | chr3.3:77669925-77669944 | MS.gene06584:CDS | 45.0% | |
| CGACAACAAGAATAAGGAGC+AGG | - | chr3.3:77671419-77671438 | MS.gene06584:intron | 45.0% | |
| CTATTATTGGCCAAGGGTGA+AGG | - | chr3.3:77669076-77669095 | MS.gene06584:intron | 45.0% | |
| GAAAAGAGACTTGGAGATGC+TGG | - | chr3.3:77669160-77669179 | MS.gene06584:intron | 45.0% | |
| GCGGGTAATTCAACTCGATA+TGG | - | chr3.3:77669944-77669963 | MS.gene06584:CDS | 45.0% | |
| GTGCAAGTAATGCAAGGTTG+TGG | + | chr3.3:77668759-77668778 | None:intergenic | 45.0% | |
| TACAAATTCCTGAGGTCCCA+GGG | - | chr3.3:77670065-77670084 | MS.gene06584:intron | 45.0% | |
| TAGTCACTCTCTCGACAAGT+TGG | + | chr3.3:77668922-77668941 | None:intergenic | 45.0% | |
| TCAGAAAGGGAGTAGTCTTC+CGG | + | chr3.3:77671537-77671556 | None:intergenic | 45.0% | |
| TGTGGTTGCAGCAGCAAATA+TGG | - | chr3.3:77671370-77671389 | MS.gene06584:intron | 45.0% | |
| TTACAAATTCCTGAGGTCCC+AGG | - | chr3.3:77670064-77670083 | MS.gene06584:intron | 45.0% | |
| ! | ATTTTTCACGCCGGACGTTA+TGG | - | chr3.3:77669298-77669317 | MS.gene06584:intron | 45.0% |
| ! | GGTAAGTGGGCAAAAAGCAT+GGG | - | chr3.3:77668675-77668694 | MS.gene06584:CDS | 45.0% |
| ! | TTTCTGTGAAGCACTTCGAC+AGG | - | chr3.3:77670639-77670658 | MS.gene06584:CDS | 45.0% |
| !! | AACACATTAGCCTTCACCCT+TGG | + | chr3.3:77669089-77669108 | None:intergenic | 45.0% |
| !! | TGATTGGCATTGGCTTCAGT+TGG | + | chr3.3:77669918-77669937 | None:intergenic | 45.0% |
| AGAGATAGCGTTGCATCGTG+AGG | + | chr3.3:77669759-77669778 | None:intergenic | 50.0% | |
| ATACAAAACCCTGGGACCTC+AGG | + | chr3.3:77670076-77670095 | None:intergenic | 50.0% | |
| CACTGATGCAGATGCTGACA+AGG | - | chr3.3:77670121-77670140 | MS.gene06584:intron | 50.0% | |
| CAGCAAATCATCTGGGAGCA+CGG | + | chr3.3:77671600-77671619 | None:intergenic | 50.0% | |
| CATCTACCTTTCTCCACCTC+AGG | + | chr3.3:77671513-77671532 | None:intergenic | 50.0% | |
| CCGCATAGCATGATTGGCAT+TGG | + | chr3.3:77669928-77669947 | None:intergenic | 50.0% | |
| CTGAGGTGGAGAAAGGTAGA+TGG | - | chr3.3:77671511-77671530 | MS.gene06584:intron | 50.0% | |
| GCGAAACGGTGAAATTAGGC+AGG | - | chr3.3:77669701-77669720 | MS.gene06584:CDS | 50.0% | |
| GGGTAAGTGGGCAAAAAGCA+TGG | - | chr3.3:77668674-77668693 | MS.gene06584:CDS | 50.0% | |
| GTTAGTCACCGCAATCATCG+GGG | - | chr3.3:77670241-77670260 | MS.gene06584:intron | 50.0% | |
| TACCTTTCTCCACCTCAGGA+GGG | + | chr3.3:77671509-77671528 | None:intergenic | 50.0% | |
| TGGGTCCAAGCTGACATAGA+TGG | - | chr3.3:77670824-77670843 | MS.gene06584:intron | 50.0% | |
| ! | AGTGGGCAAAAAGCATGGGA+AGG | - | chr3.3:77668679-77668698 | MS.gene06584:CDS | 50.0% |
| ! | GGTTAGTCACCGCAATCATC+GGG | - | chr3.3:77670240-77670259 | MS.gene06584:intron | 50.0% |
| !! | GGGTTAGTCACCGCAATCAT+CGG | - | chr3.3:77670239-77670258 | MS.gene06584:intron | 50.0% |
| !!! | AGTTTTGTTCCCTCCTGAGG+TGG | - | chr3.3:77671497-77671516 | MS.gene06584:intron | 50.0% |
| !!! | TGCAGTTTTGTTCCCTCCTG+AGG | - | chr3.3:77671494-77671513 | MS.gene06584:intron | 50.0% |
| AGCAGACAAGCCTGTCTTGC+AGG | + | chr3.3:77671309-77671328 | None:intergenic | 55.0% | |
| AGGACGAACAACCGTGGAGA+TGG | - | chr3.3:77669205-77669224 | MS.gene06584:intron | 55.0% | |
| CTACCTTTCTCCACCTCAGG+AGG | + | chr3.3:77671510-77671529 | None:intergenic | 55.0% | |
| CTTGGAAGGACGAACAACCG+TGG | - | chr3.3:77669199-77669218 | MS.gene06584:intron | 55.0% | |
| GAACGCGCATACCATCTCCA+CGG | + | chr3.3:77669219-77669238 | None:intergenic | 55.0% | |
| GACTGGAATGGAAGCAAGCG+TGG | - | chr3.3:77670035-77670054 | MS.gene06584:intron | 55.0% | |
| GGTGGAGAAAGGTAGATGGC+CGG | - | chr3.3:77671515-77671534 | MS.gene06584:intron | 55.0% | |
| TGAGCAATGGCCTGCAAGAC+AGG | - | chr3.3:77671296-77671315 | MS.gene06584:intron | 55.0% | |
| TTCCCTCCTGAGGTGGAGAA+AGG | - | chr3.3:77671504-77671523 | MS.gene06584:intron | 55.0% | |
| ! | TGGGAGCACGGCATCCTTAT+CGG | + | chr3.3:77671588-77671607 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77668666 | 77671620 | 77668666 | ID=MS.gene06584 |
| chr3.3 | mRNA | 77668666 | 77671620 | 77668666 | ID=MS.gene06584.t1;Parent=MS.gene06584 |
| chr3.3 | exon | 77671611 | 77671620 | 77671611 | ID=MS.gene06584.t1.exon1;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77671611 | 77671620 | 77671611 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77671060 | 77671152 | 77671060 | ID=MS.gene06584.t1.exon2;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77671060 | 77671152 | 77671060 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77670492 | 77670712 | 77670492 | ID=MS.gene06584.t1.exon3;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77670492 | 77670712 | 77670492 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77670339 | 77670415 | 77670339 | ID=MS.gene06584.t1.exon4;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77670339 | 77670415 | 77670339 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77670144 | 77670252 | 77670144 | ID=MS.gene06584.t1.exon5;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77670144 | 77670252 | 77670144 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77669923 | 77670048 | 77669923 | ID=MS.gene06584.t1.exon6;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77669923 | 77670048 | 77669923 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77669626 | 77669733 | 77669626 | ID=MS.gene06584.t1.exon7;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77669626 | 77669733 | 77669626 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77669409 | 77669516 | 77669409 | ID=MS.gene06584.t1.exon8;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77669409 | 77669516 | 77669409 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| chr3.3 | exon | 77668666 | 77668905 | 77668666 | ID=MS.gene06584.t1.exon9;Parent=MS.gene06584.t1 |
| chr3.3 | CDS | 77668666 | 77668905 | 77668666 | ID=cds.MS.gene06584.t1;Parent=MS.gene06584.t1 |
| Gene Sequence |
| Protein sequence |
