Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065964.t1 | XP_003629840.2 | 85.4 | 316 | 45 | 1 | 1 | 315 | 1 | 316 | 1.20E-101 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065964.t1 | Q8LEJ6 | 52.3 | 174 | 75 | 5 | 87 | 258 | 31 | 198 | 4.8e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065964.t1 | B7FJN1 | 85.4 | 316 | 45 | 1 | 1 | 315 | 1 | 316 | 8.9e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene065964 | 0.845606 | 3.66E-59 | -1.69E-46 |
| MS.gene058848 | MS.gene065964 | 0.868277 | 7.36E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065964.t1 | MTR_8g087460 | 96.519 | 316 | 10 | 1 | 1 | 315 | 1 | 316 | 0.0 | 588 |
| MS.gene065964.t1 | MTR_8g087470 | 95.886 | 316 | 12 | 1 | 1 | 315 | 1 | 316 | 0.0 | 526 |
| MS.gene065964.t1 | MTR_2g017950 | 61.812 | 309 | 75 | 8 | 15 | 312 | 15 | 291 | 3.03e-108 | 317 |
| MS.gene065964.t1 | MTR_4g059840 | 52.308 | 260 | 94 | 8 | 4 | 256 | 2 | 238 | 6.80e-72 | 224 |
| MS.gene065964.t1 | MTR_4g053380 | 51.504 | 266 | 102 | 9 | 6 | 265 | 6 | 250 | 6.56e-70 | 219 |
| MS.gene065964.t1 | MTR_4g059790 | 52.500 | 240 | 85 | 7 | 23 | 256 | 22 | 238 | 1.15e-67 | 213 |
| MS.gene065964.t1 | MTR_2g093970 | 43.279 | 305 | 142 | 8 | 13 | 312 | 10 | 288 | 9.38e-62 | 198 |
| MS.gene065964.t1 | MTR_2g017970 | 50.435 | 230 | 88 | 7 | 93 | 315 | 68 | 278 | 1.36e-60 | 195 |
| MS.gene065964.t1 | MTR_4g059720 | 50.855 | 234 | 60 | 6 | 13 | 244 | 10 | 190 | 1.96e-60 | 193 |
| MS.gene065964.t1 | MTR_2g017960 | 50.893 | 224 | 93 | 5 | 93 | 315 | 68 | 275 | 2.45e-60 | 194 |
| MS.gene065964.t1 | MTR_2g093980 | 51.754 | 228 | 93 | 7 | 55 | 281 | 42 | 253 | 3.58e-59 | 191 |
| MS.gene065964.t1 | MTR_2g093990 | 56.667 | 180 | 73 | 3 | 66 | 244 | 14 | 189 | 1.56e-57 | 186 |
| MS.gene065964.t1 | MTR_8g087450 | 51.802 | 222 | 93 | 7 | 22 | 242 | 16 | 224 | 7.53e-56 | 183 |
| MS.gene065964.t1 | MTR_4g059780 | 57.426 | 202 | 69 | 8 | 42 | 242 | 52 | 237 | 6.62e-55 | 181 |
| MS.gene065964.t1 | MTR_7g101080 | 50.000 | 158 | 72 | 4 | 87 | 242 | 35 | 187 | 8.46e-44 | 150 |
| MS.gene065964.t1 | MTR_2g090765 | 41.899 | 179 | 94 | 6 | 66 | 242 | 14 | 184 | 1.38e-28 | 110 |
| MS.gene065964.t1 | MTR_5g098060 | 31.395 | 172 | 114 | 2 | 92 | 263 | 47 | 214 | 7.74e-18 | 82.0 |
| MS.gene065964.t1 | MTR_7g075453 | 33.333 | 189 | 105 | 6 | 74 | 256 | 165 | 338 | 1.18e-15 | 77.4 |
| MS.gene065964.t1 | MTR_2g437700 | 31.410 | 156 | 96 | 4 | 92 | 242 | 194 | 343 | 6.37e-14 | 72.4 |
| MS.gene065964.t1 | MTR_5g098420 | 30.978 | 184 | 103 | 7 | 76 | 255 | 188 | 351 | 5.48e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065964.t1 | AT5G03170 | 50.526 | 190 | 83 | 6 | 71 | 258 | 18 | 198 | 7.45e-52 | 171 |
| MS.gene065964.t1 | AT5G60490 | 56.376 | 149 | 59 | 3 | 93 | 239 | 39 | 183 | 7.04e-48 | 161 |
| MS.gene065964.t1 | AT2G20520 | 41.451 | 193 | 103 | 6 | 66 | 255 | 15 | 200 | 1.99e-31 | 118 |
| MS.gene065964.t1 | AT5G44130 | 40.120 | 167 | 93 | 4 | 92 | 255 | 35 | 197 | 5.76e-27 | 106 |
| MS.gene065964.t1 | AT1G03870 | 34.389 | 221 | 124 | 6 | 92 | 310 | 38 | 239 | 4.80e-26 | 103 |
| MS.gene065964.t1 | AT3G46550 | 32.544 | 169 | 103 | 4 | 92 | 255 | 206 | 368 | 6.12e-18 | 84.3 |
| MS.gene065964.t1 | AT3G60900 | 30.000 | 180 | 115 | 3 | 93 | 270 | 190 | 360 | 1.11e-11 | 65.5 |
| MS.gene065964.t1 | AT2G04780 | 30.667 | 150 | 96 | 4 | 92 | 239 | 45 | 188 | 5.04e-11 | 62.4 |
| MS.gene065964.t1 | AT2G04780 | 30.667 | 150 | 96 | 4 | 92 | 239 | 45 | 188 | 5.04e-11 | 62.4 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATGGTGGGTCCTTT+TGG | 0.235120 | 4.3:+13398255 | None:intergenic |
| GCCTCTTGATCTTGTTCTTC+CGG | 0.272392 | 4.3:-13397800 | MS.gene065964:CDS |
| TAGCAAACTTGCTATTTATC+AGG | 0.275231 | 4.3:-13397839 | MS.gene065964:CDS |
| GGTGCTGTTGCTGTTGTTGC+TGG | 0.314474 | 4.3:+13398351 | None:intergenic |
| CAACTGAACGTCACTACTTA+TGG | 0.325511 | 4.3:-13397928 | MS.gene065964:CDS |
| GTTGCTGTTGTTGCTGGTAA+TGG | 0.333085 | 4.3:+13398357 | None:intergenic |
| GAGGAACCCTGCTTTGAGTT+TGG | 0.336926 | 4.3:+13398080 | None:intergenic |
| CCTGCGGATGTTTCTGCCGC+AGG | 0.350512 | 4.3:-13397652 | MS.gene065964:CDS |
| GGGTGGAATTGGTGAGAGTT+GGG | 0.354472 | 4.3:+13398431 | None:intergenic |
| TTGGAGAACGCAGAATCTTC+TGG | 0.359888 | 4.3:+13398099 | None:intergenic |
| TCACCGGCTTGTGTTTGAAC+AGG | 0.366430 | 4.3:+13397964 | None:intergenic |
| GGGGTGGAATTGGTGAGAGT+TGG | 0.379400 | 4.3:+13398430 | None:intergenic |
| TGCTATTTATCAGGTTGATA+AGG | 0.394299 | 4.3:-13397830 | MS.gene065964:CDS |
| AATTAGAACGGAGAACCTTT+TGG | 0.395304 | 4.3:+13398212 | None:intergenic |
| TTTGGAATGGGTTTGGTTGG+TGG | 0.406116 | 4.3:-13397601 | MS.gene065964:CDS |
| TGGTGGCAGTCAAGTTAGTA+TGG | 0.408478 | 4.3:-13397908 | MS.gene065964:CDS |
| GCAGTTAATGCTACCGTTAC+CGG | 0.409190 | 4.3:-13397877 | MS.gene065964:CDS |
| TGATCTTGTTCTTCCGGCTA+AGG | 0.420269 | 4.3:-13397794 | MS.gene065964:CDS |
| TCCGGCTAAGGCTCCATCTC+TGG | 0.421914 | 4.3:-13397782 | MS.gene065964:CDS |
| TCTGGCTCCGGCACCAGCTA+AGG | 0.426782 | 4.3:-13397764 | MS.gene065964:CDS |
| GGTGCACCAGTTGGTGTTGT+TGG | 0.431617 | 4.3:+13398297 | None:intergenic |
| GGTGATGGAGATGATGTTGT+AGG | 0.435283 | 4.3:+13398408 | None:intergenic |
| TGTTTGAACAGGGTTGGTTA+AGG | 0.439720 | 4.3:+13397975 | None:intergenic |
| GGGACTGTTATGGTGGGTGA+TGG | 0.441052 | 4.3:+13398276 | None:intergenic |
| CATAATCAACATTCTTCAAA+AGG | 0.442515 | 4.3:-13398235 | MS.gene065964:CDS |
| AAGGGTTTGTTGCCTAAGGC+TGG | 0.443081 | 4.3:-13397745 | MS.gene065964:CDS |
| GTATCATCACCATCAGGTTC+AGG | 0.443291 | 4.3:-13398141 | MS.gene065964:CDS |
| CGATGCTGTTGTTGATGGTA+AGG | 0.444048 | 4.3:+13398383 | None:intergenic |
| AAGAATGTTGATTATGTCAA+TGG | 0.455371 | 4.3:+13398242 | None:intergenic |
| GTGATGGAGATGATGTTGTA+GGG | 0.461192 | 4.3:+13398409 | None:intergenic |
| GCGTTCTCCAAACTCAAAGC+AGG | 0.468677 | 4.3:-13398087 | MS.gene065964:CDS |
| AGCTAAGGGTTTGTTGCCTA+AGG | 0.471832 | 4.3:-13397749 | MS.gene065964:CDS |
| CTTGTTCCAACAACACCAAC+TGG | 0.476196 | 4.3:-13398303 | MS.gene065964:CDS |
| TGGTGAGAGTTGGGCTAAAG+TGG | 0.489699 | 4.3:+13398440 | None:intergenic |
| GTCTATCAGTGAGGGAGTTG+AGG | 0.498053 | 4.3:+13398061 | None:intergenic |
| AACAAACCCTTAGCTGGTGC+CGG | 0.498056 | 4.3:+13397757 | None:intergenic |
| CTGCGGATGTTTCTGCCGCA+GGG | 0.500964 | 4.3:-13397651 | MS.gene065964:CDS |
| TTAGGCAACAAACCCTTAGC+TGG | 0.504481 | 4.3:+13397751 | None:intergenic |
| GGCTTGTGTTTGAACAGGGT+TGG | 0.506531 | 4.3:+13397969 | None:intergenic |
| GGTGGCGATGCTGTTGTTGA+TGG | 0.507303 | 4.3:+13398378 | None:intergenic |
| CACCGGCTTGTGTTTGAACA+GGG | 0.508119 | 4.3:+13397965 | None:intergenic |
| GTAGACGATGGCAGTGGTGC+TGG | 0.509847 | 4.3:-13397703 | MS.gene065964:CDS |
| ACATTCTTCAAAAGGCCAAA+AGG | 0.512960 | 4.3:-13398227 | MS.gene065964:CDS |
| CTGCCGCAGGGTCTGTGATG+TGG | 0.514851 | 4.3:-13397639 | MS.gene065964:CDS |
| GCCAGAGATGGAGCCTTAGC+CGG | 0.520251 | 4.3:+13397781 | None:intergenic |
| CAGCTAGTATCATCACCATC+AGG | 0.530331 | 4.3:-13398147 | MS.gene065964:CDS |
| CTGGCTCCGGCACCAGCTAA+GGG | 0.532888 | 4.3:-13397763 | MS.gene065964:CDS |
| TAAGGCTCCATCTCTGGCTC+CGG | 0.533797 | 4.3:-13397776 | MS.gene065964:CDS |
| AGTCAAGTTAGTATGGCTAC+TGG | 0.539108 | 4.3:-13397901 | MS.gene065964:CDS |
| AGTGGAACTGTGCTTAATCC+TGG | 0.544466 | 4.3:+13398324 | None:intergenic |
| TGATGGAGATGATGTTGTAG+GGG | 0.546507 | 4.3:+13398410 | None:intergenic |
| GCTGGTGCCGGAGCCAGAGA+TGG | 0.548351 | 4.3:+13397769 | None:intergenic |
| AGTGGTGCTGGTAGTGATGA+TGG | 0.554877 | 4.3:-13397691 | MS.gene065964:CDS |
| GTTGGTGTTGTTGGAACAAG+TGG | 0.555566 | 4.3:+13398306 | None:intergenic |
| GTTGATGGTAAGGGTGGTGA+TGG | 0.560733 | 4.3:+13398393 | None:intergenic |
| CCCACCATAACAGTCCCAAA+AGG | 0.562203 | 4.3:-13398270 | MS.gene065964:CDS |
| ATAAATAGCAAGTTTGCTAT+CGG | 0.562446 | 4.3:+13397843 | None:intergenic |
| ATACTAGCTGCGAGTTGAGT+TGG | 0.564006 | 4.3:+13398160 | None:intergenic |
| GGTATAAACAGTACCGGTAA+CGG | 0.565166 | 4.3:+13397864 | None:intergenic |
| GTGGGTGATGGTGCACCAGT+TGG | 0.574265 | 4.3:+13398288 | None:intergenic |
| TGCCGCAGGGTCTGTGATGT+GGG | 0.575041 | 4.3:-13397638 | MS.gene065964:CDS |
| AACCCTGTTCAAACACAAGC+CGG | 0.576254 | 4.3:-13397967 | MS.gene065964:CDS |
| AATTGCTAGAAGAAGAAATG+AGG | 0.579432 | 4.3:+13398479 | None:intergenic |
| TGCTAGAAGAAGAAATGAGG+TGG | 0.583738 | 4.3:+13398482 | None:intergenic |
| CACAAGCCGGTGATGATGCT+AGG | 0.584174 | 4.3:-13397954 | MS.gene065964:CDS |
| GATGGAGATGATGTTGTAGG+GGG | 0.584616 | 4.3:+13398411 | None:intergenic |
| GAGTTGGGCTAAAGTGGTGG+AGG | 0.587512 | 4.3:+13398446 | None:intergenic |
| TGAGAGTTGGGCTAAAGTGG+TGG | 0.590350 | 4.3:+13398443 | None:intergenic |
| TCGGTTGTAGACGATGGCAG+TGG | 0.591876 | 4.3:-13397709 | MS.gene065964:CDS |
| ACAGCAACAGCACCATCACC+AGG | 0.599988 | 4.3:-13398342 | MS.gene065964:CDS |
| CGTTCTCCAAACTCAAAGCA+GGG | 0.603196 | 4.3:-13398086 | MS.gene065964:CDS |
| ACTGTGCTTAATCCTGGTGA+TGG | 0.604248 | 4.3:+13398330 | None:intergenic |
| GCTATCGGTATAAACAGTAC+CGG | 0.606873 | 4.3:+13397858 | None:intergenic |
| TCATCACCATCAGGTTCAGG+AGG | 0.610251 | 4.3:-13398138 | MS.gene065964:CDS |
| TTTGAGAAGACGAATTAGAA+CGG | 0.612652 | 4.3:+13398200 | None:intergenic |
| GCCGGAAGAACAAGATCAAG+AGG | 0.613702 | 4.3:+13397799 | None:intergenic |
| AATGTTGATTATGTCAATGG+TGG | 0.616748 | 4.3:+13398245 | None:intergenic |
| GCTGTTGTTGCTGGTAATGG+TGG | 0.619693 | 4.3:+13398360 | None:intergenic |
| TTGAAGCCTAGCATCATCAC+CGG | 0.621788 | 4.3:+13397948 | None:intergenic |
| CTGAACGTCACTACTTATGG+TGG | 0.628986 | 4.3:-13397925 | MS.gene065964:CDS |
| CCTGCGGCAGAAACATCCGC+AGG | 0.629386 | 4.3:+13397652 | None:intergenic |
| AAATCGAAACGAATGAAGCG+AGG | 0.637672 | 4.3:+13398010 | None:intergenic |
| GATGCTGTTGTTGATGGTAA+GGG | 0.638676 | 4.3:+13398384 | None:intergenic |
| AATCGAAACGAATGAAGCGA+GGG | 0.648536 | 4.3:+13398011 | None:intergenic |
| TAGTGATGATGGTGATGGCA+AGG | 0.649260 | 4.3:-13397680 | MS.gene065964:CDS |
| GTTAACCCTCCTGAACCTGA+TGG | 0.664853 | 4.3:+13398132 | None:intergenic |
| AATTCATCGGTTGTAGACGA+TGG | 0.674617 | 4.3:-13397715 | MS.gene065964:CDS |
| GCTGGTAGTGATGATGGTGA+TGG | 0.674633 | 4.3:-13397685 | MS.gene065964:CDS |
| ATGTTGATTATGTCAATGGT+GGG | 0.681774 | 4.3:+13398246 | None:intergenic |
| GCTGTTGTTGATGGTAAGGG+TGG | 0.686845 | 4.3:+13398387 | None:intergenic |
| TACCCACATCACAGACCCTG+CGG | 0.690242 | 4.3:+13397636 | None:intergenic |
| TGATGGCAAGGCTTTGCCTG+CGG | 0.695763 | 4.3:-13397668 | MS.gene065964:CDS |
| CATCACCATCAGGTTCAGGA+GGG | 0.700637 | 4.3:-13398137 | MS.gene065964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CATAATCAACATTCTTCAAA+AGG | - | chr4.3:13397866-13397885 | MS.gene065964:CDS | 25.0% |
| !! | AAGAATGTTGATTATGTCAA+TGG | + | chr4.3:13397862-13397881 | None:intergenic | 25.0% |
| !!! | ATAAATAGCAAGTTTGCTAT+CGG | + | chr4.3:13398261-13398280 | None:intergenic | 25.0% |
| AATTGCTAGAAGAAGAAATG+AGG | + | chr4.3:13397625-13397644 | None:intergenic | 30.0% | |
| TTTGAGAAGACGAATTAGAA+CGG | + | chr4.3:13397904-13397923 | None:intergenic | 30.0% | |
| ! | AACTTTTTGTCTATCAGTGA+GGG | + | chr4.3:13398051-13398070 | None:intergenic | 30.0% |
| ! | AATGTTGATTATGTCAATGG+TGG | + | chr4.3:13397859-13397878 | None:intergenic | 30.0% |
| ! | ATGTTGATTATGTCAATGGT+GGG | + | chr4.3:13397858-13397877 | None:intergenic | 30.0% |
| !! | TAGCAAACTTGCTATTTATC+AGG | - | chr4.3:13398262-13398281 | MS.gene065964:CDS | 30.0% |
| !! | TGCTATTTATCAGGTTGATA+AGG | - | chr4.3:13398271-13398290 | MS.gene065964:CDS | 30.0% |
| !!! | AAACGTTGTTGTTTTTGGAA+TGG | - | chr4.3:13398487-13398506 | MS.gene065964:CDS | 30.0% |
| !!! | AACGTTGTTGTTTTTGGAAT+GGG | - | chr4.3:13398488-13398507 | MS.gene065964:CDS | 30.0% |
| ACATTCTTCAAAAGGCCAAA+AGG | - | chr4.3:13397874-13397893 | MS.gene065964:CDS | 35.0% | |
| AGAATCTTCTGGTGCAAAAA+TGG | + | chr4.3:13397994-13398013 | None:intergenic | 35.0% | |
| GGCTGGAAAAACTAATTCAT+CGG | - | chr4.3:13398373-13398392 | MS.gene065964:CDS | 35.0% | |
| ! | AATTAGAACGGAGAACCTTT+TGG | + | chr4.3:13397892-13397911 | None:intergenic | 35.0% |
| ! | CAACTTTTTGTCTATCAGTG+AGG | + | chr4.3:13398052-13398071 | None:intergenic | 35.0% |
| !!! | GAATTAGTTTTTCCAGCCTT+AGG | + | chr4.3:13398371-13398390 | None:intergenic | 35.0% |
| !!! | TGGGTAAACGTTGTTGTTTT+TGG | - | chr4.3:13398482-13398501 | MS.gene065964:CDS | 35.0% |
| !!! | TGTTGTTTTTGGAATGGGTT+TGG | - | chr4.3:13398493-13398512 | MS.gene065964:CDS | 35.0% |
| AAATCGAAACGAATGAAGCG+AGG | + | chr4.3:13398094-13398113 | None:intergenic | 40.0% | |
| AATCGAAACGAATGAAGCGA+GGG | + | chr4.3:13398093-13398112 | None:intergenic | 40.0% | |
| AGTCAAGTTAGTATGGCTAC+TGG | - | chr4.3:13398200-13398219 | MS.gene065964:CDS | 40.0% | |
| CAACTGAACGTCACTACTTA+TGG | - | chr4.3:13398173-13398192 | MS.gene065964:CDS | 40.0% | |
| GCTATCGGTATAAACAGTAC+CGG | + | chr4.3:13398246-13398265 | None:intergenic | 40.0% | |
| TGATGGAGATGATGTTGTAG+GGG | + | chr4.3:13397694-13397713 | None:intergenic | 40.0% | |
| TGCTAGAAGAAGAAATGAGG+TGG | + | chr4.3:13397622-13397641 | None:intergenic | 40.0% | |
| ! | AATTCATCGGTTGTAGACGA+TGG | - | chr4.3:13398386-13398405 | MS.gene065964:CDS | 40.0% |
| ! | GTGATGGAGATGATGTTGTA+GGG | + | chr4.3:13397695-13397714 | None:intergenic | 40.0% |
| !! | GATGCTGTTGTTGATGGTAA+GGG | + | chr4.3:13397720-13397739 | None:intergenic | 40.0% |
| !! | GGTATAAACAGTACCGGTAA+CGG | + | chr4.3:13398240-13398259 | None:intergenic | 40.0% |
| !! | TGTTTGAACAGGGTTGGTTA+AGG | + | chr4.3:13398129-13398148 | None:intergenic | 40.0% |
| !!! | GTTTTTGGAATGGGTTTGGT+TGG | - | chr4.3:13398497-13398516 | MS.gene065964:CDS | 40.0% |
| AACCCTGTTCAAACACAAGC+CGG | - | chr4.3:13398134-13398153 | MS.gene065964:CDS | 45.0% | |
| ACTGTGCTTAATCCTGGTGA+TGG | + | chr4.3:13397774-13397793 | None:intergenic | 45.0% | |
| AGTGGAACTGTGCTTAATCC+TGG | + | chr4.3:13397780-13397799 | None:intergenic | 45.0% | |
| CAGCTAGTATCATCACCATC+AGG | - | chr4.3:13397954-13397973 | MS.gene065964:CDS | 45.0% | |
| CGTTCTCCAAACTCAAAGCA+GGG | - | chr4.3:13398015-13398034 | MS.gene065964:CDS | 45.0% | |
| CTGAACGTCACTACTTATGG+TGG | - | chr4.3:13398176-13398195 | MS.gene065964:CDS | 45.0% | |
| CTTGTTCCAACAACACCAAC+TGG | - | chr4.3:13397798-13397817 | MS.gene065964:CDS | 45.0% | |
| GATGGAGATGATGTTGTAGG+GGG | + | chr4.3:13397693-13397712 | None:intergenic | 45.0% | |
| GCAGTTAATGCTACCGTTAC+CGG | - | chr4.3:13398224-13398243 | MS.gene065964:CDS | 45.0% | |
| GCCTCTTGATCTTGTTCTTC+CGG | - | chr4.3:13398301-13398320 | MS.gene065964:CDS | 45.0% | |
| GTATCATCACCATCAGGTTC+AGG | - | chr4.3:13397960-13397979 | MS.gene065964:CDS | 45.0% | |
| TGATCTTGTTCTTCCGGCTA+AGG | - | chr4.3:13398307-13398326 | MS.gene065964:CDS | 45.0% | |
| TGGTGGCAGTCAAGTTAGTA+TGG | - | chr4.3:13398193-13398212 | MS.gene065964:CDS | 45.0% | |
| TTAGGCAACAAACCCTTAGC+TGG | + | chr4.3:13398353-13398372 | None:intergenic | 45.0% | |
| TTGAAGCCTAGCATCATCAC+CGG | + | chr4.3:13398156-13398175 | None:intergenic | 45.0% | |
| TTGGAGAACGCAGAATCTTC+TGG | + | chr4.3:13398005-13398024 | None:intergenic | 45.0% | |
| ! | ATACTAGCTGCGAGTTGAGT+TGG | + | chr4.3:13397944-13397963 | None:intergenic | 45.0% |
| ! | GTTGCTGTTGTTGCTGGTAA+TGG | + | chr4.3:13397747-13397766 | None:intergenic | 45.0% |
| ! | TTTGGAATGGGTTTGGTTGG+TGG | - | chr4.3:13398500-13398519 | MS.gene065964:CDS | 45.0% |
| !! | AGCTAAGGGTTTGTTGCCTA+AGG | - | chr4.3:13398352-13398371 | MS.gene065964:CDS | 45.0% |
| !! | CGATGCTGTTGTTGATGGTA+AGG | + | chr4.3:13397721-13397740 | None:intergenic | 45.0% |
| !! | GGTGATGGAGATGATGTTGT+AGG | + | chr4.3:13397696-13397715 | None:intergenic | 45.0% |
| !! | GTTGGTGTTGTTGGAACAAG+TGG | + | chr4.3:13397798-13397817 | None:intergenic | 45.0% |
| !! | TAGTGATGATGGTGATGGCA+AGG | - | chr4.3:13398421-13398440 | MS.gene065964:CDS | 45.0% |
| !!! | ATGTCAATGGTGGGTCCTTT+TGG | + | chr4.3:13397849-13397868 | None:intergenic | 45.0% |
| !!! | CCTTTTGGGACTGTTATGGT+GGG | + | chr4.3:13397834-13397853 | None:intergenic | 45.0% |
| !!! | TCCTTTTGGGACTGTTATGG+TGG | + | chr4.3:13397835-13397854 | None:intergenic | 45.0% |
| !!! | TGTCAATGGTGGGTCCTTTT+GGG | + | chr4.3:13397848-13397867 | None:intergenic | 45.0% |
| AACAAACCCTTAGCTGGTGC+CGG | + | chr4.3:13398347-13398366 | None:intergenic | 50.0% | |
| CATCACCATCAGGTTCAGGA+GGG | - | chr4.3:13397964-13397983 | MS.gene065964:CDS | 50.0% | |
| CCCACCATAACAGTCCCAAA+AGG | - | chr4.3:13397831-13397850 | MS.gene065964:CDS | 50.0% | |
| GATGTTGTAGGGGGTGGAAT+TGG | + | chr4.3:13397684-13397703 | None:intergenic | 50.0% | |
| GCCGGAAGAACAAGATCAAG+AGG | + | chr4.3:13398305-13398324 | None:intergenic | 50.0% | |
| GCGTTCTCCAAACTCAAAGC+AGG | - | chr4.3:13398014-13398033 | MS.gene065964:CDS | 50.0% | |
| GGCTTGTGTTTGAACAGGGT+TGG | + | chr4.3:13398135-13398154 | None:intergenic | 50.0% | |
| GGGTGGAATTGGTGAGAGTT+GGG | + | chr4.3:13397673-13397692 | None:intergenic | 50.0% | |
| GTCTATCAGTGAGGGAGTTG+AGG | + | chr4.3:13398043-13398062 | None:intergenic | 50.0% | |
| GTTAACCCTCCTGAACCTGA+TGG | + | chr4.3:13397972-13397991 | None:intergenic | 50.0% | |
| TCATCACCATCAGGTTCAGG+AGG | - | chr4.3:13397963-13397982 | MS.gene065964:CDS | 50.0% | |
| TGAGAGTTGGGCTAAAGTGG+TGG | + | chr4.3:13397661-13397680 | None:intergenic | 50.0% | |
| TGGTGAGAGTTGGGCTAAAG+TGG | + | chr4.3:13397664-13397683 | None:intergenic | 50.0% | |
| ! | GAGGAACCCTGCTTTGAGTT+TGG | + | chr4.3:13398024-13398043 | None:intergenic | 50.0% |
| !! | AAGGGTTTGTTGCCTAAGGC+TGG | - | chr4.3:13398356-13398375 | MS.gene065964:CDS | 50.0% |
| !! | AGTGGTGCTGGTAGTGATGA+TGG | - | chr4.3:13398410-13398429 | MS.gene065964:CDS | 50.0% |
| !! | CACCGGCTTGTGTTTGAACA+GGG | + | chr4.3:13398139-13398158 | None:intergenic | 50.0% |
| !! | GCTGGTAGTGATGATGGTGA+TGG | - | chr4.3:13398416-13398435 | MS.gene065964:CDS | 50.0% |
| !! | GCTGTTGTTGATGGTAAGGG+TGG | + | chr4.3:13397717-13397736 | None:intergenic | 50.0% |
| !! | GCTGTTGTTGCTGGTAATGG+TGG | + | chr4.3:13397744-13397763 | None:intergenic | 50.0% |
| !! | GTTGATGGTAAGGGTGGTGA+TGG | + | chr4.3:13397711-13397730 | None:intergenic | 50.0% |
| !! | TCACCGGCTTGTGTTTGAAC+AGG | + | chr4.3:13398140-13398159 | None:intergenic | 50.0% |
| !!! | GGGTCCTTTTGGGACTGTTA+TGG | + | chr4.3:13397838-13397857 | None:intergenic | 50.0% |
| ACAGCAACAGCACCATCACC+AGG | - | chr4.3:13397759-13397778 | MS.gene065964:CDS | 55.0% | |
| GAGTTGGGCTAAAGTGGTGG+AGG | + | chr4.3:13397658-13397677 | None:intergenic | 55.0% | |
| GGAGATGATGTTGTAGGGGG+TGG | + | chr4.3:13397690-13397709 | None:intergenic | 55.0% | |
| GGGGTGGAATTGGTGAGAGT+TGG | + | chr4.3:13397674-13397693 | None:intergenic | 55.0% | |
| GGTGGCGATGCTGTTGTTGA+TGG | + | chr4.3:13397726-13397745 | None:intergenic | 55.0% | |
| TACCCACATCACAGACCCTG+CGG | + | chr4.3:13398468-13398487 | None:intergenic | 55.0% | |
| TCGGTTGTAGACGATGGCAG+TGG | - | chr4.3:13398392-13398411 | MS.gene065964:CDS | 55.0% | |
| TGATGGCAAGGCTTTGCCTG+CGG | - | chr4.3:13398433-13398452 | MS.gene065964:CDS | 55.0% | |
| ! | CACAAGCCGGTGATGATGCT+AGG | - | chr4.3:13398147-13398166 | MS.gene065964:CDS | 55.0% |
| ! | TAAGGCTCCATCTCTGGCTC+CGG | - | chr4.3:13398325-13398344 | MS.gene065964:CDS | 55.0% |
| !! | GGGACTGTTATGGTGGGTGA+TGG | + | chr4.3:13397828-13397847 | None:intergenic | 55.0% |
| !! | GGTGCACCAGTTGGTGTTGT+TGG | + | chr4.3:13397807-13397826 | None:intergenic | 55.0% |
| !! | GGTGCTGTTGCTGTTGTTGC+TGG | + | chr4.3:13397753-13397772 | None:intergenic | 55.0% |
| GCCAGAGATGGAGCCTTAGC+CGG | + | chr4.3:13398323-13398342 | None:intergenic | 60.0% | |
| GTAGACGATGGCAGTGGTGC+TGG | - | chr4.3:13398398-13398417 | MS.gene065964:CDS | 60.0% | |
| TCCGGCTAAGGCTCCATCTC+TGG | - | chr4.3:13398319-13398338 | MS.gene065964:CDS | 60.0% | |
| TGCCGCAGGGTCTGTGATGT+GGG | - | chr4.3:13398463-13398482 | MS.gene065964:CDS | 60.0% | |
| ! | CTGCGGATGTTTCTGCCGCA+GGG | - | chr4.3:13398450-13398469 | MS.gene065964:CDS | 60.0% |
| ! | GTGGGTGATGGTGCACCAGT+TGG | + | chr4.3:13397816-13397835 | None:intergenic | 60.0% |
| CCTGCGGCAGAAACATCCGC+AGG | + | chr4.3:13398452-13398471 | None:intergenic | 65.0% | |
| CTGCCGCAGGGTCTGTGATG+TGG | - | chr4.3:13398462-13398481 | MS.gene065964:CDS | 65.0% | |
| CTGGCTCCGGCACCAGCTAA+GGG | - | chr4.3:13398338-13398357 | MS.gene065964:CDS | 65.0% | |
| ! | CCTGCGGATGTTTCTGCCGC+AGG | - | chr4.3:13398449-13398468 | MS.gene065964:CDS | 65.0% |
| ! | TCTGGCTCCGGCACCAGCTA+AGG | - | chr4.3:13398337-13398356 | MS.gene065964:CDS | 65.0% |
| ! | GCTGGTGCCGGAGCCAGAGA+TGG | + | chr4.3:13398335-13398354 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13397588 | 13398535 | 13397588 | ID=MS.gene065964 |
| chr4.3 | mRNA | 13397588 | 13398535 | 13397588 | ID=MS.gene065964.t1;Parent=MS.gene065964 |
| chr4.3 | exon | 13397588 | 13398535 | 13397588 | ID=MS.gene065964.t1.exon1;Parent=MS.gene065964.t1 |
| chr4.3 | CDS | 13397588 | 13398535 | 13397588 | ID=cds.MS.gene065964.t1;Parent=MS.gene065964.t1 |
| Gene Sequence |
| Protein sequence |
