AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065965

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065965.t1 MTR_8g087470 95.570 316 13 1 1 315 1 316 0.0 525
MS.gene065965.t1 MTR_8g087460 93.987 316 18 1 1 315 1 316 0.0 518
MS.gene065965.t1 MTR_2g017950 60.248 322 83 9 4 312 2 291 3.34e-106 311
MS.gene065965.t1 MTR_4g059840 51.362 257 95 8 7 256 5 238 1.81e-69 218
MS.gene065965.t1 MTR_4g053380 50.752 266 104 10 6 265 6 250 1.11e-66 211
MS.gene065965.t1 MTR_4g059790 49.402 251 101 9 71 315 53 283 8.33e-66 209
MS.gene065965.t1 MTR_2g017970 59.563 183 65 5 93 274 68 242 1.77e-61 197
MS.gene065965.t1 MTR_2g017960 52.232 224 90 5 93 315 68 275 2.63e-61 196
MS.gene065965.t1 MTR_4g059720 62.011 179 58 5 67 244 21 190 3.30e-61 195
MS.gene065965.t1 MTR_2g093970 41.720 314 152 8 4 312 1 288 7.75e-61 196
MS.gene065965.t1 MTR_2g093980 45.878 279 123 8 5 281 1 253 8.73e-60 193
MS.gene065965.t1 MTR_2g093990 57.222 180 72 3 66 244 14 189 1.05e-57 186
MS.gene065965.t1 MTR_4g059780 57.921 202 68 8 42 242 52 237 2.65e-56 184
MS.gene065965.t1 MTR_8g087450 43.729 295 142 10 22 314 16 288 1.51e-55 182
MS.gene065965.t1 MTR_7g101080 51.266 158 70 4 87 242 35 187 5.17e-45 154
MS.gene065965.t1 MTR_2g090765 42.458 179 93 6 66 242 14 184 1.91e-29 113
MS.gene065965.t1 MTR_5g098060 31.977 172 113 2 92 263 47 214 1.67e-18 84.0
MS.gene065965.t1 MTR_7g075453 32.812 192 106 6 74 255 165 343 2.21e-16 79.7
MS.gene065965.t1 MTR_2g437700 30.769 156 97 4 92 242 194 343 1.18e-13 71.6
MS.gene065965.t1 MTR_5g098420 30.978 184 103 7 76 255 188 351 4.27e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065965.t1 AT5G03170 51.579 190 81 6 71 258 18 198 2.46e-53 175
MS.gene065965.t1 AT5G60490 57.718 149 57 3 93 239 39 183 2.65e-49 165
MS.gene065965.t1 AT2G20520 41.451 193 103 6 66 255 15 200 9.35e-32 119
MS.gene065965.t1 AT5G44130 40.719 167 92 4 92 255 35 197 3.84e-28 109
MS.gene065965.t1 AT1G03870 34.842 221 123 6 92 310 38 239 1.36e-27 108
MS.gene065965.t1 AT3G46550 31.492 181 113 4 80 255 194 368 1.02e-17 83.6
MS.gene065965.t1 AT3G60900 30.928 194 119 4 79 270 180 360 3.75e-13 70.1
MS.gene065965.t1 AT2G04780 31.333 150 95 4 92 239 45 188 1.91e-11 63.5
MS.gene065965.t1 AT2G04780 31.333 150 95 4 92 239 45 188 1.91e-11 63.5

Find 87 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCAATGGTGGGTCCTTT+TGG 0.235120 4.3:+13394936 None:intergenic
GCCTCTTGATCTTGTTCTTC+CGG 0.272392 4.3:-13394481 MS.gene065965:CDS
TAGCAAACTTGCTATTTATC+AGG 0.275231 4.3:-13394520 MS.gene065965:CDS
GGTGCTGTTGCTGTTGTTGC+TGG 0.314474 4.3:+13395032 None:intergenic
GTTGCTGTTGTTGCTGGTAA+TGG 0.333085 4.3:+13395038 None:intergenic
GAGGAACCCTGCTTTAAGTT+TGG 0.342330 4.3:+13394761 None:intergenic
AGAGTTGGGCTAATGTGGTT+GGG 0.351783 4.3:+13395126 None:intergenic
GCAGTTAATGCTACCGTTAC+TGG 0.358591 4.3:-13394558 MS.gene065965:CDS
TTGGAGAATGCAGAATCTTC+TGG 0.359282 4.3:+13394780 None:intergenic
GTTGGTGGAGTTGTTCTATA+AGG 0.359667 4.3:-13394267 None:intergenic
CCTGCTGATGTTTCTGCTGC+AGG 0.360987 4.3:-13394333 MS.gene065965:CDS
TTTGGCTCCTGCACCGGCTA+AGG 0.362528 4.3:-13394445 MS.gene065965:CDS
CAGTGGCAATCAAGTTAGTA+TGG 0.363282 4.3:-13394589 MS.gene065965:CDS
TCCGGCTAAGGCTCCAGCTT+TGG 0.363612 4.3:-13394463 MS.gene065965:CDS
TCACCGGCTTGTGTTTGAAC+AGG 0.366430 4.3:+13394645 None:intergenic
GAGAGTTGGGCTAATGTGGT+TGG 0.368809 4.3:+13395125 None:intergenic
GGTTTGAATTGGTGAGAGTT+GGG 0.383872 4.3:+13395112 None:intergenic
GGGTTTGAATTGGTGAGAGT+TGG 0.392657 4.3:+13395111 None:intergenic
TGCTATTTATCAGGTTGATA+AGG 0.394299 4.3:-13394511 MS.gene065965:CDS
AATTAGAACGGAGAACCTTT+TGG 0.395304 4.3:+13394893 None:intergenic
GTGAGGGTGATGATATTGTT+GGG 0.400745 4.3:+13395090 None:intergenic
TTTGGAATGGGTTTGGTTGG+TGG 0.406116 4.3:-13394282 MS.gene065965:CDS
GGTGCACCAGTTGGTGTTGT+TGG 0.418778 4.3:+13394978 None:intergenic
TGATCTTGTTCTTCCGGCTA+AGG 0.420269 4.3:-13394475 MS.gene065965:CDS
GGTGAGGGTGATGATATTGT+TGG 0.425491 4.3:+13395089 None:intergenic
GATATTGTTGGGGTTTGAAT+TGG 0.430089 4.3:+13395101 None:intergenic
GCCGGTGCAGGAGCCAAAGC+TGG 0.431263 4.3:+13394450 None:intergenic
TGTTTGAACAGGGTTGGTTA+AGG 0.439720 4.3:+13394656 None:intergenic
CTGCTGCAGGATCTGTGCAT+TGG 0.442652 4.3:-13394320 MS.gene065965:CDS
AAGGGTTTGTTGCCTAAGGC+TGG 0.443081 4.3:-13394426 MS.gene065965:CDS
GTATCATCACCATCAGGTTC+AGG 0.443291 4.3:-13394822 MS.gene065965:CDS
CTTGTTCCAACAACACCAAC+TGG 0.444147 4.3:-13394984 MS.gene065965:CDS
GGTGGTGATGCTGTTGTTGA+TGG 0.445870 4.3:+13395059 None:intergenic
TGATGCTGTTGTTGATGGTA+AGG 0.449757 4.3:+13395064 None:intergenic
AAGAATGTTGATTATGTCAA+TGG 0.455371 4.3:+13394923 None:intergenic
TTGGCTCCTGCACCGGCTAA+GGG 0.463641 4.3:-13394444 MS.gene065965:CDS
AACAAACCCTTAGCCGGTGC+AGG 0.463951 4.3:+13394438 None:intergenic
GGCTAAGGGTTTGTTGCCTA+AGG 0.468336 4.3:-13394430 MS.gene065965:CDS
GCATTCTCCAAACTTAAAGC+AGG 0.469572 4.3:-13394768 MS.gene065965:CDS
AATTCTTCGGTTGTAGATGA+TGG 0.470488 4.3:-13394396 MS.gene065965:CDS
GAGTTGGGCTAATGTGGTTG+GGG 0.472510 4.3:+13395127 None:intergenic
GTAGATGATGGTAGCGGTGC+TGG 0.479324 4.3:-13394384 MS.gene065965:CDS
TCCAGCTTTGGCTCCTGCAC+CGG 0.487588 4.3:-13394451 MS.gene065965:CDS
GTCTATCAGTGAGGGAGTTG+AGG 0.498053 4.3:+13394742 None:intergenic
TGAGGGTGATGATATTGTTG+GGG 0.500322 4.3:+13395091 None:intergenic
AGCGGAACTGTGCTTAATCC+TGG 0.504963 4.3:+13395005 None:intergenic
TGGTGAGAGTTGGGCTAATG+TGG 0.506138 4.3:+13395121 None:intergenic
GGCTTGTGTTTGAACAGGGT+TGG 0.506531 4.3:+13394650 None:intergenic
GTTGATGGTAAGGGTGGTGA+GGG 0.507310 4.3:+13395074 None:intergenic
CACCGGCTTGTGTTTGAACA+GGG 0.508119 4.3:+13394646 None:intergenic
ATACTAGCTGCGAGTTGAGT+TGG 0.509205 4.3:+13394841 None:intergenic
GCCAAAGCTGGAGCCTTAGC+CGG 0.517768 4.3:+13394462 None:intergenic
AACGGTAGCATTAACTGCTC+CGG 0.527378 4.3:+13394563 None:intergenic
TGTTGATGGTAAGGGTGGTG+AGG 0.528646 4.3:+13395073 None:intergenic
CAGCTAGTATCATCACCATC+AGG 0.530331 4.3:-13394828 MS.gene065965:CDS
CCCACCAAAGCAATCCCAAA+AGG 0.532318 4.3:-13394951 MS.gene065965:CDS
AAATAGAAACAAACGAAGCA+AGG 0.540997 4.3:+13394691 None:intergenic
AGCGGTGCTGGCAGTGATGA+TGG 0.560075 4.3:-13394372 MS.gene065965:CDS
TTAGGCAACAAACCCTTAGC+CGG 0.560846 4.3:+13394432 None:intergenic
ATAAATAGCAAGTTTGCTAT+CGG 0.562446 4.3:+13394524 None:intergenic
GTTGGTGTTGTTGGAACAAG+CGG 0.574823 4.3:+13394987 None:intergenic
AACCCTGTTCAAACACAAGC+CGG 0.576254 4.3:-13394648 MS.gene065965:CDS
AATTGCTAGAAGAAAGAATG+AGG 0.576326 4.3:+13395160 None:intergenic
GCTGTTGTTGATGGTAAGGG+TGG 0.581658 4.3:+13395068 None:intergenic
GCTGTTGTTGCTGGTAATGG+TGG 0.582499 4.3:+13395041 None:intergenic
CACAAGCCGGTGATGATGCT+AGG 0.584174 4.3:-13394635 MS.gene065965:CDS
AATCAAGTTAGTATGGCTAC+CGG 0.593663 4.3:-13394582 MS.gene065965:CDS
CATTCTCCAAACTTAAAGCA+GGG 0.596225 4.3:-13394767 MS.gene065965:CDS
TCGGTTGTAGATGATGGTAG+CGG 0.599850 4.3:-13394390 MS.gene065965:CDS
ACAGCAACAGCACCATCACC+AGG 0.599988 4.3:-13395023 MS.gene065965:CDS
GATGCTGTTGTTGATGGTAA+GGG 0.606751 4.3:+13395065 None:intergenic
CCTGCAGCAGAAACATCAGC+AGG 0.607919 4.3:+13394333 None:intergenic
TCATCACCATCAGGTTCAGG+AGG 0.610251 4.3:-13394819 MS.gene065965:CDS
TTTGAGAAGACGAATTAGAA+CGG 0.612652 4.3:+13394881 None:intergenic
GCCGGAAGAACAAGATCAAG+AGG 0.613702 4.3:+13394480 None:intergenic
AATGTTGATTATGTCAATGG+TGG 0.616748 4.3:+13394926 None:intergenic
AATAGAAACAAACGAAGCAA+GGG 0.620497 4.3:+13394692 None:intergenic
TTGAAGCCTAGCATCATCAC+CGG 0.621788 4.3:+13394629 None:intergenic
TGCTAGAAGAAAGAATGAGG+TGG 0.621900 4.3:+13395163 None:intergenic
CAGTGATGATGGTGATGGAA+AGG 0.627687 4.3:-13394361 MS.gene065965:CDS
ACTGTGCTTAATCCTGGTGA+TGG 0.634396 4.3:+13395011 None:intergenic
GGTATAAACAGTACCAGTAA+CGG 0.640082 4.3:+13394545 None:intergenic
GCTGGCAGTGATGATGGTGA+TGG 0.645590 4.3:-13394366 MS.gene065965:CDS
GTTAACCCTCCTGAACCTGA+TGG 0.664853 4.3:+13394813 None:intergenic
CTGAACGTCACTACTTACAG+TGG 0.677815 4.3:-13394606 MS.gene065965:CDS
ATGTTGATTATGTCAATGGT+GGG 0.681774 4.3:+13394927 None:intergenic
CATCACCATCAGGTTCAGGA+GGG 0.700637 4.3:-13394818 MS.gene065965:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATGTTGATTATGTCAA+TGG + chr4.3:13394543-13394562 None:intergenic 25.0%
!!! AATGTTGTTGTTTTTGGAAT+GGG - chr4.3:13395169-13395188 MS.gene065965:CDS 25.0%
!!! ATAAATAGCAAGTTTGCTAT+CGG + chr4.3:13394942-13394961 None:intergenic 25.0%
AAATAGAAACAAACGAAGCA+AGG + chr4.3:13394775-13394794 None:intergenic 30.0%
AATAGAAACAAACGAAGCAA+GGG + chr4.3:13394774-13394793 None:intergenic 30.0%
AATTGCTAGAAGAAAGAATG+AGG + chr4.3:13394306-13394325 None:intergenic 30.0%
ACATTCTTCAAAAAGCCAAA+AGG - chr4.3:13394555-13394574 MS.gene065965:CDS 30.0%
TTTGAGAAGACGAATTAGAA+CGG + chr4.3:13394585-13394604 None:intergenic 30.0%
! AACTTTTTGTCTATCAGTGA+GGG + chr4.3:13394732-13394751 None:intergenic 30.0%
! AATGTTGATTATGTCAATGG+TGG + chr4.3:13394540-13394559 None:intergenic 30.0%
! ATGTTGATTATGTCAATGGT+GGG + chr4.3:13394539-13394558 None:intergenic 30.0%
!! TAGCAAACTTGCTATTTATC+AGG - chr4.3:13394943-13394962 MS.gene065965:CDS 30.0%
!! TGCTATTTATCAGGTTGATA+AGG - chr4.3:13394952-13394971 MS.gene065965:CDS 30.0%
!!! GAATGTTGTTGTTTTTGGAA+TGG - chr4.3:13395168-13395187 MS.gene065965:CDS 30.0%
AATCAAGTTAGTATGGCTAC+CGG - chr4.3:13394881-13394900 MS.gene065965:CDS 35.0%
AATTCTTCGGTTGTAGATGA+TGG - chr4.3:13395067-13395086 MS.gene065965:CDS 35.0%
AGAATCTTCTGGTGCAAAAA+TGG + chr4.3:13394675-13394694 None:intergenic 35.0%
CATTCTCCAAACTTAAAGCA+GGG - chr4.3:13394696-13394715 MS.gene065965:CDS 35.0%
GATATTGTTGGGGTTTGAAT+TGG + chr4.3:13394365-13394384 None:intergenic 35.0%
GGCTGGAAAAACAAATTCTT+CGG - chr4.3:13395054-13395073 MS.gene065965:CDS 35.0%
GGTATAAACAGTACCAGTAA+CGG + chr4.3:13394921-13394940 None:intergenic 35.0%
! AATTAGAACGGAGAACCTTT+TGG + chr4.3:13394573-13394592 None:intergenic 35.0%
! CAACTTTTTGTCTATCAGTG+AGG + chr4.3:13394733-13394752 None:intergenic 35.0%
!! GAATTTGTTTTTCCAGCCTT+AGG + chr4.3:13395052-13395071 None:intergenic 35.0%
!!! TGGCTGAATGTTGTTGTTTT+TGG - chr4.3:13395163-13395182 MS.gene065965:CDS 35.0%
!!! TGTTGTTTTTGGAATGGGTT+TGG - chr4.3:13395174-13395193 MS.gene065965:CDS 35.0%
CAGTGGCAATCAAGTTAGTA+TGG - chr4.3:13394874-13394893 MS.gene065965:CDS 40.0%
GCATTCTCCAAACTTAAAGC+AGG - chr4.3:13394695-13394714 MS.gene065965:CDS 40.0%
GGTTTGAATTGGTGAGAGTT+GGG + chr4.3:13394354-13394373 None:intergenic 40.0%
GTGAGGGTGATGATATTGTT+GGG + chr4.3:13394376-13394395 None:intergenic 40.0%
TGAGGGTGATGATATTGTTG+GGG + chr4.3:13394375-13394394 None:intergenic 40.0%
TGCTAGAAGAAAGAATGAGG+TGG + chr4.3:13394303-13394322 None:intergenic 40.0%
TTGGAGAATGCAGAATCTTC+TGG + chr4.3:13394686-13394705 None:intergenic 40.0%
!! GATGCTGTTGTTGATGGTAA+GGG + chr4.3:13394401-13394420 None:intergenic 40.0%
!! TGATGCTGTTGTTGATGGTA+AGG + chr4.3:13394402-13394421 None:intergenic 40.0%
!! TGTTTGAACAGGGTTGGTTA+AGG + chr4.3:13394810-13394829 None:intergenic 40.0%
!!! GTTTTTGGAATGGGTTTGGT+TGG - chr4.3:13395178-13395197 MS.gene065965:CDS 40.0%
AACCCTGTTCAAACACAAGC+CGG - chr4.3:13394815-13394834 MS.gene065965:CDS 45.0%
AACGGTAGCATTAACTGCTC+CGG + chr4.3:13394903-13394922 None:intergenic 45.0%
ACTGTGCTTAATCCTGGTGA+TGG + chr4.3:13394455-13394474 None:intergenic 45.0%
AGAGTTGGGCTAATGTGGTT+GGG + chr4.3:13394340-13394359 None:intergenic 45.0%
CAGCTAGTATCATCACCATC+AGG - chr4.3:13394635-13394654 MS.gene065965:CDS 45.0%
CTGAACGTCACTACTTACAG+TGG - chr4.3:13394857-13394876 MS.gene065965:CDS 45.0%
CTTGTTCCAACAACACCAAC+TGG - chr4.3:13394479-13394498 MS.gene065965:CDS 45.0%
GCAGTTAATGCTACCGTTAC+TGG - chr4.3:13394905-13394924 MS.gene065965:CDS 45.0%
GCCTCTTGATCTTGTTCTTC+CGG - chr4.3:13394982-13395001 MS.gene065965:CDS 45.0%
GGGTTTGAATTGGTGAGAGT+TGG + chr4.3:13394355-13394374 None:intergenic 45.0%
GGTGAGGGTGATGATATTGT+TGG + chr4.3:13394377-13394396 None:intergenic 45.0%
GTATCATCACCATCAGGTTC+AGG - chr4.3:13394641-13394660 MS.gene065965:CDS 45.0%
TGATCTTGTTCTTCCGGCTA+AGG - chr4.3:13394988-13395007 MS.gene065965:CDS 45.0%
TTAGGCAACAAACCCTTAGC+CGG + chr4.3:13395034-13395053 None:intergenic 45.0%
TTGAAGCCTAGCATCATCAC+CGG + chr4.3:13394837-13394856 None:intergenic 45.0%
! ATACTAGCTGCGAGTTGAGT+TGG + chr4.3:13394625-13394644 None:intergenic 45.0%
! GAGGAACCCTGCTTTAAGTT+TGG + chr4.3:13394705-13394724 None:intergenic 45.0%
! GTTGCTGTTGTTGCTGGTAA+TGG + chr4.3:13394428-13394447 None:intergenic 45.0%
! TCGGTTGTAGATGATGGTAG+CGG - chr4.3:13395073-13395092 MS.gene065965:CDS 45.0%
! TTTGGAATGGGTTTGGTTGG+TGG - chr4.3:13395181-13395200 MS.gene065965:CDS 45.0%
!! CAGTGATGATGGTGATGGAA+AGG - chr4.3:13395102-13395121 MS.gene065965:CDS 45.0%
!! GTTGGTGTTGTTGGAACAAG+CGG + chr4.3:13394479-13394498 None:intergenic 45.0%
!!! ATGTCAATGGTGGGTCCTTT+TGG + chr4.3:13394530-13394549 None:intergenic 45.0%
!!! CCTTTTGGGATTGCTTTGGT+GGG + chr4.3:13394515-13394534 None:intergenic 45.0%
!!! CTTTTGGGATTGCTTTGGTG+GGG + chr4.3:13394514-13394533 None:intergenic 45.0%
!!! TCCTTTTGGGATTGCTTTGG+TGG + chr4.3:13394516-13394535 None:intergenic 45.0%
!!! TGTCAATGGTGGGTCCTTTT+GGG + chr4.3:13394529-13394548 None:intergenic 45.0%
!!! TTTTGGGATTGCTTTGGTGG+GGG + chr4.3:13394513-13394532 None:intergenic 45.0%
AGCGGAACTGTGCTTAATCC+TGG + chr4.3:13394461-13394480 None:intergenic 50.0%
CATCACCATCAGGTTCAGGA+GGG - chr4.3:13394645-13394664 MS.gene065965:CDS 50.0%
CCCACCAAAGCAATCCCAAA+AGG - chr4.3:13394512-13394531 MS.gene065965:CDS 50.0%
GAGAGTTGGGCTAATGTGGT+TGG + chr4.3:13394341-13394360 None:intergenic 50.0%
GAGTTGGGCTAATGTGGTTG+GGG + chr4.3:13394339-13394358 None:intergenic 50.0%
GCCGGAAGAACAAGATCAAG+AGG + chr4.3:13394986-13395005 None:intergenic 50.0%
GGCTTGTGTTTGAACAGGGT+TGG + chr4.3:13394816-13394835 None:intergenic 50.0%
GTCTATCAGTGAGGGAGTTG+AGG + chr4.3:13394724-13394743 None:intergenic 50.0%
GTTAACCCTCCTGAACCTGA+TGG + chr4.3:13394653-13394672 None:intergenic 50.0%
TCATCACCATCAGGTTCAGG+AGG - chr4.3:13394644-13394663 MS.gene065965:CDS 50.0%
TGGTGAGAGTTGGGCTAATG+TGG + chr4.3:13394345-13394364 None:intergenic 50.0%
! GGTGGTGATGCTGTTGTTGA+TGG + chr4.3:13394407-13394426 None:intergenic 50.0%
!! AAGGGTTTGTTGCCTAAGGC+TGG - chr4.3:13395037-13395056 MS.gene065965:CDS 50.0%
!! CACCGGCTTGTGTTTGAACA+GGG + chr4.3:13394820-13394839 None:intergenic 50.0%
!! GCTGTTGTTGATGGTAAGGG+TGG + chr4.3:13394398-13394417 None:intergenic 50.0%
!! GCTGTTGTTGCTGGTAATGG+TGG + chr4.3:13394425-13394444 None:intergenic 50.0%
!! GGCTAAGGGTTTGTTGCCTA+AGG - chr4.3:13395033-13395052 MS.gene065965:CDS 50.0%
!! GTTGATGGTAAGGGTGGTGA+GGG + chr4.3:13394392-13394411 None:intergenic 50.0%
!! TCACCGGCTTGTGTTTGAAC+AGG + chr4.3:13394821-13394840 None:intergenic 50.0%
!! TGTTGATGGTAAGGGTGGTG+AGG + chr4.3:13394393-13394412 None:intergenic 50.0%
!!! GGGTCCTTTTGGGATTGCTT+TGG + chr4.3:13394519-13394538 None:intergenic 50.0%
AACAAACCCTTAGCCGGTGC+AGG + chr4.3:13395028-13395047 None:intergenic 55.0%
ACAGCAACAGCACCATCACC+AGG - chr4.3:13394440-13394459 MS.gene065965:CDS 55.0%
CCTGCAGCAGAAACATCAGC+AGG + chr4.3:13395133-13395152 None:intergenic 55.0%
CTGCTGCAGGATCTGTGCAT+TGG - chr4.3:13395143-13395162 MS.gene065965:CDS 55.0%
! CACAAGCCGGTGATGATGCT+AGG - chr4.3:13394828-13394847 MS.gene065965:CDS 55.0%
! CCTGCTGATGTTTCTGCTGC+AGG - chr4.3:13395130-13395149 MS.gene065965:CDS 55.0%
!! GCTGGCAGTGATGATGGTGA+TGG - chr4.3:13395097-13395116 MS.gene065965:CDS 55.0%
!! GGTGCACCAGTTGGTGTTGT+TGG + chr4.3:13394488-13394507 None:intergenic 55.0%
!! GGTGCTGTTGCTGTTGTTGC+TGG + chr4.3:13394434-13394453 None:intergenic 55.0%
!! GTAGATGATGGTAGCGGTGC+TGG - chr4.3:13395079-13395098 MS.gene065965:CDS 55.0%
GCCAAAGCTGGAGCCTTAGC+CGG + chr4.3:13395004-13395023 None:intergenic 60.0%
GGGATTGCTTTGGTGGGGGA+TGG + chr4.3:13394509-13394528 None:intergenic 60.0%
TCCGGCTAAGGCTCCAGCTT+TGG - chr4.3:13395000-13395019 MS.gene065965:CDS 60.0%
! TCCAGCTTTGGCTCCTGCAC+CGG - chr4.3:13395012-13395031 MS.gene065965:CDS 60.0%
!! AGCGGTGCTGGCAGTGATGA+TGG - chr4.3:13395091-13395110 MS.gene065965:CDS 60.0%
!! TTGGCTCCTGCACCGGCTAA+GGG - chr4.3:13395019-13395038 MS.gene065965:CDS 60.0%
!! TTTGGCTCCTGCACCGGCTA+AGG - chr4.3:13395018-13395037 MS.gene065965:CDS 60.0%
GTGGGGGATGGTGCACCAGT+TGG + chr4.3:13394497-13394516 None:intergenic 65.0%
GCCGGTGCAGGAGCCAAAGC+TGG + chr4.3:13395016-13395035 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 13394269 13395216 13394269 ID=MS.gene065965
chr4.3 mRNA 13394269 13395216 13394269 ID=MS.gene065965.t1;Parent=MS.gene065965
chr4.3 exon 13394269 13395216 13394269 ID=MS.gene065965.t1.exon1;Parent=MS.gene065965.t1
chr4.3 CDS 13394269 13395216 13394269 ID=cds.MS.gene065965.t1;Parent=MS.gene065965.t1
Gene Sequence

>MS.gene065965

ATGAAAAATATGATGCAACAGTCTCTCATTTCCACCTCATTCTTTCTTCTAGCAATTACTTTCTACACCCCAACCACATTAGCCCAACTCTCACCAATTCAAACCCCAACAATATCATCACCCTCACCACCCTTACCATCAACAACAGCATCACCACCATTACCAGCAACAACAGCAACAGCACCATCACCAGGATTAAGCACAGTTCCGCTTGTTCCAACAACACCAACTGGTGCACCATCCCCCACCAAAGCAATCCCAAAAGGACCCACCATTGACATAATCAACATTCTTCAAAAAGCCAAAAGGTTCTCCGTTCTAATTCGTCTTCTCAAAACAACACAATTAATAAACCAACTCAACTCGCAGCTAGTATCATCACCATCAGGTTCAGGAGGGTTAACCATTTTTGCACCAGAAGATTCTGCATTCTCCAAACTTAAAGCAGGGTTCCTCAACTCCCTCACTGATAGACAAAAAGTTGAACTCTTACAGTTTCACTCCCTTGCTTCGTTTGTTTCTATTTCAAACTTTGATACCTTAACCAACCCTGTTCAAACACAAGCCGGTGATGATGCTAGGCTTCAACTGAACGTCACTACTTACAGTGGCAATCAAGTTAGTATGGCTACCGGAGCAGTTAATGCTACCGTTACTGGTACTGTTTATACCGATAGCAAACTTGCTATTTATCAGGTTGATAAGGTACTTATGCCTCTTGATCTTGTTCTTCCGGCTAAGGCTCCAGCTTTGGCTCCTGCACCGGCTAAGGGTTTGTTGCCTAAGGCTGGAAAAACAAATTCTTCGGTTGTAGATGATGGTAGCGGTGCTGGCAGTGATGATGGTGATGGAAAGGCTTTACCTGCTGATGTTTCTGCTGCAGGATCTGTGCATTGGCTGAATGTTGTTGTTTTTGGAATGGGTTTGGTTGGTGGAGTTGTTCTATAA
Protein sequence

>MS.gene065965.t1

MKNMMQQSLISTSFFLLAITFYTPTTLAQLSPIQTPTISSPSPPLPSTTASPPLPATTATAPSPGLSTVPLVPTTPTGAPSPTKAIPKGPTIDIINILQKAKRFSVLIRLLKTTQLINQLNSQLVSSPSGSGGLTIFAPEDSAFSKLKAGFLNSLTDRQKVELLQFHSLASFVSISNFDTLTNPVQTQAGDDARLQLNVTTYSGNQVSMATGAVNATVTGTVYTDSKLAIYQVDKVLMPLDLVLPAKAPALAPAPAKGLLPKAGKTNSSVVDDGSGAGSDDGDGKALPADVSAAGSVHWLNVVVFGMGLVGGVVL