Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065977.t1 | PNX76972.1 | 87.6 | 572 | 70 | 1 | 1 | 571 | 102 | 673 | 6.80E-276 | 959.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065977.t1 | Q9ZP55 | 56.0 | 566 | 245 | 3 | 1 | 564 | 104 | 667 | 6.5e-174 | 612.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065977.t1 | A0A2K3LEM1 | 87.6 | 572 | 70 | 1 | 1 | 571 | 102 | 673 | 4.9e-276 | 959.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014901 | MS.gene065977 | PPI |
| MS.gene065977 | MS.gene32695 | PPI |
| MS.gene80193 | MS.gene065977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065977.t1 | MTR_8g087770 | 84.266 | 572 | 85 | 2 | 1 | 571 | 107 | 674 | 0.0 | 987 |
| MS.gene065977.t1 | MTR_8g087750 | 82.394 | 568 | 100 | 0 | 1 | 568 | 110 | 677 | 0.0 | 974 |
| MS.gene065977.t1 | MTR_8g087763 | 88.889 | 225 | 25 | 0 | 267 | 491 | 4 | 228 | 7.23e-147 | 427 |
| MS.gene065977.t1 | MTR_4g085860 | 76.316 | 76 | 17 | 1 | 99 | 173 | 2 | 77 | 5.57e-31 | 115 |
| MS.gene065977.t1 | MTR_6g045107 | 75.000 | 76 | 18 | 1 | 99 | 173 | 2 | 77 | 5.02e-29 | 110 |
| MS.gene065977.t1 | MTR_4g093750 | 30.030 | 333 | 212 | 7 | 25 | 345 | 102 | 425 | 1.03e-26 | 115 |
| MS.gene065977.t1 | MTR_4g093750 | 36.406 | 217 | 122 | 4 | 25 | 230 | 102 | 313 | 3.70e-26 | 114 |
| MS.gene065977.t1 | MTR_2g009690 | 33.884 | 242 | 152 | 3 | 25 | 259 | 111 | 351 | 4.79e-25 | 110 |
| MS.gene065977.t1 | MTR_5g009150 | 26.733 | 404 | 262 | 13 | 24 | 411 | 99 | 484 | 3.97e-19 | 91.7 |
| MS.gene065977.t1 | MTR_1g032550 | 31.963 | 219 | 131 | 5 | 24 | 230 | 99 | 311 | 7.84e-19 | 90.5 |
| MS.gene065977.t1 | MTR_8g105580 | 31.963 | 219 | 131 | 5 | 24 | 230 | 98 | 310 | 5.04e-18 | 88.2 |
| MS.gene065977.t1 | MTR_8g105580 | 31.963 | 219 | 131 | 5 | 24 | 230 | 98 | 310 | 5.45e-18 | 87.8 |
| MS.gene065977.t1 | MTR_7g451010 | 31.621 | 253 | 149 | 7 | 24 | 262 | 104 | 346 | 7.05e-18 | 87.8 |
| MS.gene065977.t1 | MTR_8g099550 | 30.040 | 253 | 153 | 7 | 24 | 262 | 98 | 340 | 2.26e-17 | 85.9 |
| MS.gene065977.t1 | MTR_8g009510 | 31.298 | 262 | 155 | 8 | 15 | 262 | 96 | 346 | 2.88e-17 | 85.9 |
| MS.gene065977.t1 | MTR_8g009510 | 31.452 | 248 | 146 | 7 | 29 | 262 | 2 | 239 | 7.03e-17 | 84.3 |
| MS.gene065977.t1 | MTR_4g098920 | 30.620 | 258 | 153 | 8 | 20 | 262 | 94 | 340 | 1.57e-16 | 83.2 |
| MS.gene065977.t1 | MTR_8g027675 | 38.060 | 134 | 77 | 2 | 24 | 157 | 97 | 224 | 3.50e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065977.t1 | AT1G60500 | 56.007 | 566 | 245 | 3 | 1 | 564 | 104 | 667 | 0.0 | 657 |
| MS.gene065977.t1 | AT1G60530 | 72.500 | 200 | 55 | 0 | 1 | 200 | 101 | 300 | 1.50e-96 | 296 |
| MS.gene065977.t1 | AT2G14120 | 27.660 | 329 | 225 | 7 | 25 | 345 | 114 | 437 | 5.27e-25 | 110 |
| MS.gene065977.t1 | AT2G14120 | 32.883 | 222 | 141 | 3 | 25 | 239 | 114 | 334 | 6.85e-25 | 110 |
| MS.gene065977.t1 | AT2G14120 | 27.660 | 329 | 225 | 7 | 25 | 345 | 114 | 437 | 7.28e-25 | 110 |
| MS.gene065977.t1 | AT2G14120 | 27.660 | 329 | 225 | 7 | 25 | 345 | 114 | 437 | 7.75e-25 | 109 |
| MS.gene065977.t1 | AT4G33650 | 27.660 | 329 | 225 | 7 | 25 | 345 | 129 | 452 | 1.10e-24 | 109 |
| MS.gene065977.t1 | AT4G33650 | 27.660 | 329 | 225 | 7 | 25 | 345 | 129 | 452 | 1.12e-24 | 109 |
| MS.gene065977.t1 | AT1G14830 | 28.740 | 254 | 163 | 5 | 20 | 262 | 95 | 341 | 3.58e-19 | 91.7 |
| MS.gene065977.t1 | AT2G44590 | 21.033 | 542 | 376 | 16 | 29 | 558 | 104 | 605 | 1.85e-18 | 89.4 |
| MS.gene065977.t1 | AT5G42080 | 26.683 | 401 | 266 | 10 | 24 | 411 | 98 | 483 | 4.22e-18 | 88.2 |
| MS.gene065977.t1 | AT5G42080 | 26.683 | 401 | 266 | 10 | 24 | 411 | 98 | 483 | 4.22e-18 | 88.2 |
| MS.gene065977.t1 | AT3G60190 | 28.400 | 250 | 169 | 4 | 20 | 262 | 100 | 346 | 5.70e-18 | 88.2 |
| MS.gene065977.t1 | AT5G42080 | 30.242 | 248 | 159 | 5 | 24 | 262 | 98 | 340 | 1.70e-17 | 86.3 |
| MS.gene065977.t1 | AT5G42080 | 30.242 | 248 | 159 | 5 | 24 | 262 | 98 | 340 | 2.32e-17 | 85.1 |
| MS.gene065977.t1 | AT3G61760 | 34.568 | 162 | 99 | 3 | 3 | 161 | 74 | 231 | 1.23e-15 | 80.5 |
| MS.gene065977.t1 | AT3G61760 | 34.568 | 162 | 99 | 3 | 3 | 161 | 74 | 231 | 1.47e-15 | 80.1 |
| MS.gene065977.t1 | AT3G61760 | 34.568 | 162 | 99 | 3 | 3 | 161 | 74 | 231 | 1.74e-15 | 79.7 |
Find 103 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGACAGAATTGGAAATTA+TGG | 0.172986 | 4.3:+13304987 | MS.gene065977:CDS |
| ACACTTTCAACAAAATTAAT+TGG | 0.173861 | 4.3:-13304357 | None:intergenic |
| CTTGAGGAAGCCAAATTTAT+TGG | 0.191059 | 4.3:+13304261 | MS.gene065977:CDS |
| ATTCGGAAGACCAATAAATT+TGG | 0.194065 | 4.3:-13304271 | None:intergenic |
| TATTGTTGGAATTCCTGTTT+TGG | 0.276334 | 4.3:+13303891 | MS.gene065977:CDS |
| TAACATTTATGATCTGATTA+AGG | 0.293521 | 4.3:+13303549 | MS.gene065977:CDS |
| GAGGAGTCTCCTTCAATATC+AGG | 0.303692 | 4.3:+13304897 | MS.gene065977:CDS |
| AGGCCAGATTGACAGCTTAT+TGG | 0.313028 | 4.3:+13304733 | MS.gene065977:CDS |
| TTCTAACTATTATCAGCTTC+AGG | 0.313313 | 4.3:+13304428 | MS.gene065977:CDS |
| ATCAGATCATAAATGTTATC+AGG | 0.314340 | 4.3:-13303544 | None:intergenic |
| AGAGACCGTGGCCAACATTA+TGG | 0.325375 | 4.3:+13304968 | MS.gene065977:CDS |
| TCCACAGCCAGAGCTTGTTT+TGG | 0.330947 | 4.3:+13303327 | MS.gene065977:CDS |
| TCACAAACTGTTGATAAAAC+TGG | 0.334047 | 4.3:+13303667 | MS.gene065977:CDS |
| CCTTACTTCAGAGAAAAGTT+AGG | 0.351453 | 4.3:+13304319 | MS.gene065977:CDS |
| TGAAAGTGTATGGAATTATC+TGG | 0.352378 | 4.3:+13304371 | MS.gene065977:CDS |
| CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4.3:+13303493 | MS.gene065977:CDS |
| GAACTTTGATCTCCTCCATT+AGG | 0.358271 | 4.3:-13304239 | None:intergenic |
| TAAGAAGATTAATGAGAAAC+TGG | 0.360082 | 4.3:+13303972 | MS.gene065977:CDS |
| TGGACAGAATTGGAAATTAT+GGG | 0.366857 | 4.3:+13304988 | MS.gene065977:CDS |
| CACATGTAACCCTGAGTACT+TGG | 0.369075 | 4.3:+13304551 | MS.gene065977:CDS |
| GCAGTTCTTGGCATGAAATT+CGG | 0.376721 | 4.3:-13304288 | None:intergenic |
| GCCTGCTAATTTATCCTCAC+TGG | 0.379029 | 4.3:+13304023 | MS.gene065977:CDS |
| TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | 4.3:+13303480 | MS.gene065977:CDS |
| TAAATCTCCTGAAGGTTTGC+TGG | 0.387244 | 4.3:+13303723 | MS.gene065977:CDS |
| TTCAAAATAATACTCTCTTC+AGG | 0.392099 | 4.3:-13303595 | None:intergenic |
| AACAATAGATTTGTCTATCC+TGG | 0.395168 | 4.3:-13303875 | None:intergenic |
| ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | 4.3:+13303517 | MS.gene065977:CDS |
| ACCTTCTCCAGCAAACCTTC+AGG | 0.399453 | 4.3:-13303730 | None:intergenic |
| TTTCCAATAAGCTGTCAATC+TGG | 0.399717 | 4.3:-13304736 | None:intergenic |
| TTACTACTTGTGAGTCGATA+AGG | 0.405010 | 4.3:+13303641 | MS.gene065977:CDS |
| TGTCTCTTCCCTGATATTGA+AGG | 0.410432 | 4.3:-13304906 | None:intergenic |
| TTAATCTTCTTAATGATCTC+TGG | 0.413053 | 4.3:-13303961 | None:intergenic |
| GACGATGTTAACATTGGTCT+TGG | 0.414913 | 4.3:+13303760 | MS.gene065977:CDS |
| AAGGTCAGAAAAGCAGTTCT+TGG | 0.424321 | 4.3:-13304300 | None:intergenic |
| GCCAACATTATGGACAGAAT+TGG | 0.427059 | 4.3:+13304978 | MS.gene065977:CDS |
| ACAGCCACTGAGGAGCTTGC+TGG | 0.430442 | 4.3:+13303406 | MS.gene065977:CDS |
| GTCTTGGTTATGTTTGTGTA+AGG | 0.435750 | 4.3:+13303776 | MS.gene065977:CDS |
| ATATCCACACATGTTGAATC+AGG | 0.440980 | 4.3:+13304698 | MS.gene065977:CDS |
| TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | 4.3:-13303434 | None:intergenic |
| CTTACTTCAGAGAAAAGTTA+GGG | 0.447328 | 4.3:+13304320 | MS.gene065977:CDS |
| GGCTACTAGTTTGCATGAGC+TGG | 0.448592 | 4.3:+13303993 | MS.gene065977:CDS |
| AGGATAGACAAATCTATTGT+TGG | 0.453655 | 4.3:+13303877 | MS.gene065977:CDS |
| CTCCATTAGGAAATCCTTAG+TGG | 0.456157 | 4.3:-13304226 | None:intergenic |
| TCCAATTCTGTCCATAATGT+TGG | 0.456672 | 4.3:-13304979 | None:intergenic |
| GGAAGAGACAGAAGTTGAGC+AGG | 0.460748 | 4.3:+13304919 | MS.gene065977:CDS |
| GAATCAGGCTTATGATTTGA+AGG | 0.463037 | 4.3:+13304713 | MS.gene065977:CDS |
| TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | 4.3:-13303453 | None:intergenic |
| TTATACTCCTCCAAGTACTC+AGG | 0.473801 | 4.3:-13304561 | None:intergenic |
| GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | 4.3:+13303418 | MS.gene065977:CDS |
| TCCTGAAGGTTTGCTGGAGA+AGG | 0.484851 | 4.3:+13303729 | MS.gene065977:CDS |
| AGCTTGAAGCACATGCTGAA+TGG | 0.486139 | 4.3:-13304502 | None:intergenic |
| TTATACTCCAAAACAAGCTC+TGG | 0.492061 | 4.3:-13303334 | None:intergenic |
| TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | 4.3:-13303446 | None:intergenic |
| AATGCATTGCACAGCTCGAT+TGG | 0.492439 | 4.3:+13304149 | MS.gene065977:CDS |
| TTATCAGGTTGACCATGAAC+AGG | 0.495576 | 4.3:-13303529 | None:intergenic |
| TGCTGAAAGTAATGCCACTA+AGG | 0.502696 | 4.3:+13304212 | MS.gene065977:CDS |
| TGCCACTAAGGATTTCCTAA+TGG | 0.506730 | 4.3:+13304224 | MS.gene065977:CDS |
| TGTGTGGATATTTCATAAGC+TGG | 0.507052 | 4.3:-13304686 | None:intergenic |
| GTTTGTGTAAGGAATCGAAT+TGG | 0.512590 | 4.3:+13303787 | MS.gene065977:CDS |
| CAAGCTCTGGCTGTGGAAGT+TGG | 0.517438 | 4.3:-13303321 | None:intergenic |
| CTTATTGGAAAATTGTGCTC+CGG | 0.520290 | 4.3:+13304748 | MS.gene065977:CDS |
| GCCAGTGAGGATAAATTAGC+AGG | 0.522213 | 4.3:-13304024 | None:intergenic |
| AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4.3:-13303487 | None:intergenic |
| TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | 4.3:-13303328 | None:intergenic |
| AGTGTCACACACTTCTGTCC+AGG | 0.532120 | 4.3:+13303857 | MS.gene065977:CDS |
| AATGAACTGTTATCAGCAAA+TGG | 0.537861 | 4.3:+13304852 | MS.gene065977:CDS |
| TCTGATTAAGGATATTATCA+TGG | 0.543580 | 4.3:+13303561 | MS.gene065977:CDS |
| AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | 4.3:+13303419 | MS.gene065977:CDS |
| GCTCTGGCTGTGGAAGTTGG+TGG | 0.550080 | 4.3:-13303318 | None:intergenic |
| GGAGGAGATCAAAGTTCTTG+AGG | 0.553867 | 4.3:+13304245 | MS.gene065977:CDS |
| TGTGAATGTTGATCTGCAAA+AGG | 0.555960 | 4.3:+13304821 | MS.gene065977:CDS |
| ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | 4.3:+13303460 | MS.gene065977:CDS |
| TCAAGTACTGTGAAGCTGAA+AGG | 0.569995 | 4.3:+13304642 | MS.gene065977:CDS |
| AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | 4.3:-13303410 | None:intergenic |
| TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | 4.3:-13303454 | None:intergenic |
| TATACTCCTCCAAGTACTCA+GGG | 0.581284 | 4.3:-13304560 | None:intergenic |
| CAATCACATCAATTAACCTC+CGG | 0.585742 | 4.3:-13304767 | None:intergenic |
| AGGAGTCTCCTTCAATATCA+GGG | 0.586223 | 4.3:+13304898 | MS.gene065977:CDS |
| ATGTAACCCTGAGTACTTGG+AGG | 0.589927 | 4.3:+13304554 | MS.gene065977:CDS |
| GGACAGAATTGGAAATTATG+GGG | 0.597404 | 4.3:+13304989 | MS.gene065977:CDS |
| TCTGTCCATAATGTTGGCCA+CGG | 0.598502 | 4.3:-13304973 | None:intergenic |
| AAGGCTGATAAATCTCCTGA+AGG | 0.599516 | 4.3:+13303715 | MS.gene065977:CDS |
| CACTAAGGATTTCCTAATGG+AGG | 0.603754 | 4.3:+13304227 | MS.gene065977:CDS |
| AACGCTTGCTGTCGTGACAA+AGG | 0.611997 | 4.3:+13303696 | MS.gene065977:CDS |
| CAAGCAAGTTTCAACTGATG+AGG | 0.612510 | 4.3:+13303360 | MS.gene065977:CDS |
| ACAGGAACACGAGTTATACC+TGG | 0.615115 | 4.3:-13303511 | None:intergenic |
| TGGTGTTGAGAGGCTGCTTG+AGG | 0.618613 | 4.3:+13304878 | MS.gene065977:CDS |
| TGTGCTTCAAGCTGTTGAGA+TGG | 0.619725 | 4.3:+13304512 | MS.gene065977:CDS |
| TAAGCCTGATTCAACATGTG+TGG | 0.620737 | 4.3:-13304702 | None:intergenic |
| ATTGGAAAATTGTGCTCCGG+AGG | 0.621567 | 4.3:+13304751 | MS.gene065977:CDS |
| GGAGGAGTATAACAAGCTGA+TGG | 0.621625 | 4.3:+13304572 | MS.gene065977:CDS |
| ACAGCTGACGATGTTAACAT+TGG | 0.623909 | 4.3:+13303754 | MS.gene065977:CDS |
| AAGAGTCTTACGAAGATGCA+AGG | 0.624326 | 4.3:+13303812 | MS.gene065977:CDS |
| GATTTGCAGAAAAGCAGACA+TGG | 0.624535 | 4.3:-13304052 | None:intergenic |
| CTGTTATCAGCAAATGGTGG+TGG | 0.626367 | 4.3:+13304858 | MS.gene065977:CDS |
| CAAATGGTGGTGGTGTTGAG+AGG | 0.637671 | 4.3:+13304868 | MS.gene065977:CDS |
| ACTGTGAAGCTGAAAGGTGT+TGG | 0.640769 | 4.3:+13304648 | MS.gene065977:CDS |
| GAAAGAAAGCAAAGAGACCG+TGG | 0.645229 | 4.3:+13304956 | MS.gene065977:CDS |
| TGCTATAAACACAGCCACTG+AGG | 0.658388 | 4.3:+13303396 | MS.gene065977:CDS |
| AGACATGGCATCAGCCAGTG+AGG | 0.673951 | 4.3:-13304037 | None:intergenic |
| CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | 4.3:-13303452 | None:intergenic |
| TTACTTCAGAGAAAAGTTAG+GGG | 0.725881 | 4.3:+13304321 | MS.gene065977:CDS |
| GAACTGTTATCAGCAAATGG+TGG | 0.747464 | 4.3:+13304855 | MS.gene065977:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACTTTCAACAAAATTAAT+TGG | - | chr4.3:13304360-13304379 | None:intergenic | 20.0% |
| !! | CTGAAAAAAATTCTTCTTAT+AGG | + | chr4.3:13304096-13304115 | MS.gene065977:CDS | 20.0% |
| !! | TAACATTTATGATCTGATTA+AGG | + | chr4.3:13303549-13303568 | MS.gene065977:CDS | 20.0% |
| !!! | TTAATTTTGTTGAAAGTGTA+TGG | + | chr4.3:13304361-13304380 | MS.gene065977:CDS | 20.0% |
| ! | ATCAGATCATAAATGTTATC+AGG | - | chr4.3:13303547-13303566 | None:intergenic | 25.0% |
| ! | TAAGAAGATTAATGAGAAAC+TGG | + | chr4.3:13303972-13303991 | MS.gene065977:CDS | 25.0% |
| ! | TCTGATTAAGGATATTATCA+TGG | + | chr4.3:13303561-13303580 | MS.gene065977:CDS | 25.0% |
| ! | TTAATCTTCTTAATGATCTC+TGG | - | chr4.3:13303964-13303983 | None:intergenic | 25.0% |
| ! | TTCAAAATAATACTCTCTTC+AGG | - | chr4.3:13303598-13303617 | None:intergenic | 25.0% |
| !! | ACTTTGATAGTAAAGAAGAA+TGG | + | chr4.3:13303460-13303479 | MS.gene065977:CDS | 25.0% |
| !! | TCTTTTTCTTCTTAGCAATA+AGG | - | chr4.3:13304479-13304498 | None:intergenic | 25.0% |
| AACAATAGATTTGTCTATCC+TGG | - | chr4.3:13303878-13303897 | None:intergenic | 30.0% | |
| AATGAACTGTTATCAGCAAA+TGG | + | chr4.3:13304852-13304871 | MS.gene065977:CDS | 30.0% | |
| AGGATAGACAAATCTATTGT+TGG | + | chr4.3:13303877-13303896 | MS.gene065977:CDS | 30.0% | |
| ATGGACAGAATTGGAAATTA+TGG | + | chr4.3:13304987-13305006 | MS.gene065977:CDS | 30.0% | |
| ATTCGGAAGACCAATAAATT+TGG | - | chr4.3:13304274-13304293 | None:intergenic | 30.0% | |
| CTTACTTCAGAGAAAAGTTA+GGG | + | chr4.3:13304320-13304339 | MS.gene065977:CDS | 30.0% | |
| TCTTTACTATCAAAGTCAGT+GGG | - | chr4.3:13303456-13303475 | None:intergenic | 30.0% | |
| TGGACAGAATTGGAAATTAT+GGG | + | chr4.3:13304988-13305007 | MS.gene065977:CDS | 30.0% | |
| TTACTTCAGAGAAAAGTTAG+GGG | + | chr4.3:13304321-13304340 | MS.gene065977:CDS | 30.0% | |
| TTCTAACTATTATCAGCTTC+AGG | + | chr4.3:13304428-13304447 | MS.gene065977:CDS | 30.0% | |
| TTCTTTACTATCAAAGTCAG+TGG | - | chr4.3:13303457-13303476 | None:intergenic | 30.0% | |
| ! | CAATGCATTTTCTTTTCATC+AGG | - | chr4.3:13304138-13304157 | None:intergenic | 30.0% |
| ! | TATTGTTGGAATTCCTGTTT+TGG | + | chr4.3:13303891-13303910 | MS.gene065977:CDS | 30.0% |
| ! | TCACAAACTGTTGATAAAAC+TGG | + | chr4.3:13303667-13303686 | MS.gene065977:CDS | 30.0% |
| ! | TGAAAGTGTATGGAATTATC+TGG | + | chr4.3:13304371-13304390 | MS.gene065977:CDS | 30.0% |
| AGATCAACCATAGTAAGATC+AGG | - | chr4.3:13303490-13303509 | None:intergenic | 35.0% | |
| ATATCCACACATGTTGAATC+AGG | + | chr4.3:13304698-13304717 | MS.gene065977:CDS | 35.0% | |
| CAATCACATCAATTAACCTC+CGG | - | chr4.3:13304770-13304789 | None:intergenic | 35.0% | |
| CCTTACTTCAGAGAAAAGTT+AGG | + | chr4.3:13304319-13304338 | MS.gene065977:CDS | 35.0% | |
| CTTATTGGAAAATTGTGCTC+CGG | + | chr4.3:13304748-13304767 | MS.gene065977:CDS | 35.0% | |
| CTTGAGGAAGCCAAATTTAT+TGG | + | chr4.3:13304261-13304280 | MS.gene065977:CDS | 35.0% | |
| CTTTACTATCAAAGTCAGTG+GGG | - | chr4.3:13303455-13303474 | None:intergenic | 35.0% | |
| GAATCAGGCTTATGATTTGA+AGG | + | chr4.3:13304713-13304732 | MS.gene065977:CDS | 35.0% | |
| GGACAGAATTGGAAATTATG+GGG | + | chr4.3:13304989-13305008 | MS.gene065977:CDS | 35.0% | |
| GTCTTGGTTATGTTTGTGTA+AGG | + | chr4.3:13303776-13303795 | MS.gene065977:CDS | 35.0% | |
| GTTTGTGTAAGGAATCGAAT+TGG | + | chr4.3:13303787-13303806 | MS.gene065977:CDS | 35.0% | |
| TCCAATTCTGTCCATAATGT+TGG | - | chr4.3:13304982-13305001 | None:intergenic | 35.0% | |
| TGTGAATGTTGATCTGCAAA+AGG | + | chr4.3:13304821-13304840 | MS.gene065977:CDS | 35.0% | |
| TGTGTGGATATTTCATAAGC+TGG | - | chr4.3:13304689-13304708 | None:intergenic | 35.0% | |
| TTACTACTTGTGAGTCGATA+AGG | + | chr4.3:13303641-13303660 | MS.gene065977:CDS | 35.0% | |
| TTATACTCCAAAACAAGCTC+TGG | - | chr4.3:13303337-13303356 | None:intergenic | 35.0% | |
| TTTCCAATAAGCTGTCAATC+TGG | - | chr4.3:13304739-13304758 | None:intergenic | 35.0% | |
| !!! | CCTAACTTTTCTCTGAAGTA+AGG | - | chr4.3:13304322-13304341 | None:intergenic | 35.0% |
| !!! | GAGCTTGTTTTGGAGTATAA+TGG | + | chr4.3:13303337-13303356 | MS.gene065977:CDS | 35.0% |
| AAGAGTCTTACGAAGATGCA+AGG | + | chr4.3:13303812-13303831 | MS.gene065977:CDS | 40.0% | |
| AAGGCTGATAAATCTCCTGA+AGG | + | chr4.3:13303715-13303734 | MS.gene065977:CDS | 40.0% | |
| AAGGTCAGAAAAGCAGTTCT+TGG | - | chr4.3:13304303-13304322 | None:intergenic | 40.0% | |
| ACAGCTGACGATGTTAACAT+TGG | + | chr4.3:13303754-13303773 | MS.gene065977:CDS | 40.0% | |
| AGGAGTCTCCTTCAATATCA+GGG | + | chr4.3:13304898-13304917 | MS.gene065977:CDS | 40.0% | |
| ATAACTCGTGTTCCTGTTCA+TGG | + | chr4.3:13303517-13303536 | MS.gene065977:CDS | 40.0% | |
| CAAGCAAGTTTCAACTGATG+AGG | + | chr4.3:13303360-13303379 | MS.gene065977:CDS | 40.0% | |
| CACTAAGGATTTCCTAATGG+AGG | + | chr4.3:13304227-13304246 | MS.gene065977:CDS | 40.0% | |
| CTCCATTAGGAAATCCTTAG+TGG | - | chr4.3:13304229-13304248 | None:intergenic | 40.0% | |
| CTTACTATGGTTGATCTTCC+AGG | + | chr4.3:13303493-13303512 | MS.gene065977:CDS | 40.0% | |
| GAACTGTTATCAGCAAATGG+TGG | + | chr4.3:13304855-13304874 | MS.gene065977:CDS | 40.0% | |
| GAACTTTGATCTCCTCCATT+AGG | - | chr4.3:13304242-13304261 | None:intergenic | 40.0% | |
| GATTTGCAGAAAAGCAGACA+TGG | - | chr4.3:13304055-13304074 | None:intergenic | 40.0% | |
| GCAGTTCTTGGCATGAAATT+CGG | - | chr4.3:13304291-13304310 | None:intergenic | 40.0% | |
| GCCAACATTATGGACAGAAT+TGG | + | chr4.3:13304978-13304997 | MS.gene065977:CDS | 40.0% | |
| TAAATCTCCTGAAGGTTTGC+TGG | + | chr4.3:13303723-13303742 | MS.gene065977:CDS | 40.0% | |
| TAAGCCTGATTCAACATGTG+TGG | - | chr4.3:13304705-13304724 | None:intergenic | 40.0% | |
| TATACTCCTCCAAGTACTCA+GGG | - | chr4.3:13304563-13304582 | None:intergenic | 40.0% | |
| TGCCACTAAGGATTTCCTAA+TGG | + | chr4.3:13304224-13304243 | MS.gene065977:CDS | 40.0% | |
| TGCTGAAAGTAATGCCACTA+AGG | + | chr4.3:13304212-13304231 | MS.gene065977:CDS | 40.0% | |
| TGGAGTTCCTGATCTTACTA+TGG | + | chr4.3:13303480-13303499 | MS.gene065977:CDS | 40.0% | |
| TGTCTCTTCCCTGATATTGA+AGG | - | chr4.3:13304909-13304928 | None:intergenic | 40.0% | |
| TTATACTCCTCCAAGTACTC+AGG | - | chr4.3:13304564-13304583 | None:intergenic | 40.0% | |
| ! | ACAAGCTTTTGAGCCAAAAC+AGG | - | chr4.3:13303907-13303926 | None:intergenic | 40.0% |
| ! | GACGATGTTAACATTGGTCT+TGG | + | chr4.3:13303760-13303779 | MS.gene065977:CDS | 40.0% |
| ! | TCAAGTACTGTGAAGCTGAA+AGG | + | chr4.3:13304642-13304661 | MS.gene065977:CDS | 40.0% |
| !! | TTATCAGGTTGACCATGAAC+AGG | - | chr4.3:13303532-13303551 | None:intergenic | 40.0% |
| AATGCATTGCACAGCTCGAT+TGG | + | chr4.3:13304149-13304168 | MS.gene065977:CDS | 45.0% | |
| ACAGGAACACGAGTTATACC+TGG | - | chr4.3:13303514-13303533 | None:intergenic | 45.0% | |
| AGCTTGAAGCACATGCTGAA+TGG | - | chr4.3:13304505-13304524 | None:intergenic | 45.0% | |
| AGGCCAGATTGACAGCTTAT+TGG | + | chr4.3:13304733-13304752 | MS.gene065977:CDS | 45.0% | |
| ATGTAACCCTGAGTACTTGG+AGG | + | chr4.3:13304554-13304573 | MS.gene065977:CDS | 45.0% | |
| ATTGGAAAATTGTGCTCCGG+AGG | + | chr4.3:13304751-13304770 | MS.gene065977:CDS | 45.0% | |
| CACATGTAACCCTGAGTACT+TGG | + | chr4.3:13304551-13304570 | MS.gene065977:CDS | 45.0% | |
| CTGTTATCAGCAAATGGTGG+TGG | + | chr4.3:13304858-13304877 | MS.gene065977:CDS | 45.0% | |
| GAAAGAAAGCAAAGAGACCG+TGG | + | chr4.3:13304956-13304975 | MS.gene065977:CDS | 45.0% | |
| GAGGAGTCTCCTTCAATATC+AGG | + | chr4.3:13304897-13304916 | MS.gene065977:CDS | 45.0% | |
| GCCAGTGAGGATAAATTAGC+AGG | - | chr4.3:13304027-13304046 | None:intergenic | 45.0% | |
| GCCTGCTAATTTATCCTCAC+TGG | + | chr4.3:13304023-13304042 | MS.gene065977:CDS | 45.0% | |
| GGAGGAGATCAAAGTTCTTG+AGG | + | chr4.3:13304245-13304264 | MS.gene065977:CDS | 45.0% | |
| TATCAAAGTCAGTGGGGTGT+TGG | - | chr4.3:13303449-13303468 | None:intergenic | 45.0% | |
| TCTGTCCATAATGTTGGCCA+CGG | - | chr4.3:13304976-13304995 | None:intergenic | 45.0% | |
| TGCTATAAACACAGCCACTG+AGG | + | chr4.3:13303396-13303415 | MS.gene065977:CDS | 45.0% | |
| TGTGCTTCAAGCTGTTGAGA+TGG | + | chr4.3:13304512-13304531 | MS.gene065977:CDS | 45.0% | |
| ! | ACTGTGAAGCTGAAAGGTGT+TGG | + | chr4.3:13304648-13304667 | MS.gene065977:CDS | 45.0% |
| ! | GGAGGAGTATAACAAGCTGA+TGG | + | chr4.3:13304572-13304591 | MS.gene065977:CDS | 45.0% |
| ACCTTCTCCAGCAAACCTTC+AGG | - | chr4.3:13303733-13303752 | None:intergenic | 50.0% | |
| AGAGACCGTGGCCAACATTA+TGG | + | chr4.3:13304968-13304987 | MS.gene065977:CDS | 50.0% | |
| AGTGTCACACACTTCTGTCC+AGG | + | chr4.3:13303857-13303876 | MS.gene065977:CDS | 50.0% | |
| GGAAGAGACAGAAGTTGAGC+AGG | + | chr4.3:13304919-13304938 | MS.gene065977:CDS | 50.0% | |
| ! | GGCTACTAGTTTGCATGAGC+TGG | + | chr4.3:13303993-13304012 | MS.gene065977:CDS | 50.0% |
| ! | TCCAAAACAAGCTCTGGCTG+TGG | - | chr4.3:13303331-13303350 | None:intergenic | 50.0% |
| !! | AACGCTTGCTGTCGTGACAA+AGG | + | chr4.3:13303696-13303715 | MS.gene065977:CDS | 50.0% |
| !! | CAAATGGTGGTGGTGTTGAG+AGG | + | chr4.3:13304868-13304887 | MS.gene065977:CDS | 50.0% |
| !! | TCCACAGCCAGAGCTTGTTT+TGG | + | chr4.3:13303327-13303346 | MS.gene065977:CDS | 50.0% |
| !! | TCCTGAAGGTTTGCTGGAGA+AGG | + | chr4.3:13303729-13303748 | MS.gene065977:CDS | 50.0% |
| !! | TGGGGTGTTGGAAATCCCTT+TGG | - | chr4.3:13303437-13303456 | None:intergenic | 50.0% |
| AGACATGGCATCAGCCAGTG+AGG | - | chr4.3:13304040-13304059 | None:intergenic | 55.0% | |
| ! | CAAGCTCTGGCTGTGGAAGT+TGG | - | chr4.3:13303324-13303343 | None:intergenic | 55.0% |
| ! | TGGTGTTGAGAGGCTGCTTG+AGG | + | chr4.3:13304878-13304897 | MS.gene065977:CDS | 55.0% |
| !! | AGCTTGCTGGCACTGCCAAA+GGG | + | chr4.3:13303419-13303438 | MS.gene065977:CDS | 55.0% |
| ACAGCCACTGAGGAGCTTGC+TGG | + | chr4.3:13303406-13303425 | MS.gene065977:CDS | 60.0% | |
| AGTGCCAGCAAGCTCCTCAG+TGG | - | chr4.3:13303413-13303432 | None:intergenic | 60.0% | |
| GCTCTGGCTGTGGAAGTTGG+TGG | - | chr4.3:13303321-13303340 | None:intergenic | 60.0% | |
| !! | GAGCTTGCTGGCACTGCCAA+AGG | + | chr4.3:13303418-13303437 | MS.gene065977:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13303304 | 13305019 | 13303304 | ID=MS.gene065977 |
| chr4.3 | mRNA | 13303304 | 13305019 | 13303304 | ID=MS.gene065977.t1;Parent=MS.gene065977 |
| chr4.3 | exon | 13303304 | 13305019 | 13303304 | ID=MS.gene065977.t1.exon1;Parent=MS.gene065977.t1 |
| chr4.3 | CDS | 13303304 | 13305019 | 13303304 | ID=cds.MS.gene065977.t1;Parent=MS.gene065977.t1 |
| Gene Sequence |
| Protein sequence |
