AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066018

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066018.t1 MTR_1g075480 96.721 732 24 0 1 732 14 745 0.0 1454
MS.gene066018.t1 MTR_1g075480 96.721 732 24 0 1 732 1 732 0.0 1454
MS.gene066018.t1 MTR_1g075480 96.327 735 24 1 1 732 14 748 0.0 1449
MS.gene066018.t1 MTR_1g075480 96.815 628 20 0 1 628 1 628 0.0 1255
MS.gene066018.t1 MTR_1g069630 58.723 705 278 6 35 732 15 713 0.0 801
MS.gene066018.t1 MTR_7g097230 55.923 726 304 7 16 732 10 728 0.0 770
MS.gene066018.t1 MTR_7g097230 55.360 569 241 5 16 575 10 574 0.0 590
MS.gene066018.t1 MTR_5g026810 44.778 699 364 9 41 731 8 692 0.0 575
MS.gene066018.t1 MTR_8g071330 43.571 700 370 11 41 731 2 685 0.0 558
MS.gene066018.t1 MTR_1g018040 41.967 722 397 9 24 731 3 716 2.94e-175 519
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066018.t1 AT4G28600 51.230 732 336 8 14 732 16 739 0.0 693
MS.gene066018.t1 AT4G28600 51.230 732 336 8 14 732 16 739 0.0 693
MS.gene066018.t1 AT4G28600 51.153 737 334 9 14 732 16 744 0.0 689
MS.gene066018.t1 AT2G43040 44.767 688 362 9 52 731 23 700 0.0 547
MS.gene066018.t1 AT2G43040 44.767 688 362 9 52 731 23 700 0.0 547
MS.gene066018.t1 AT1G27460 39.777 719 390 12 24 731 3 689 1.17e-156 470
MS.gene066018.t1 AT1G27460 39.917 719 393 12 24 731 3 693 2.62e-156 469
MS.gene066018.t1 AT1G27460 39.711 554 306 8 24 566 3 539 3.35e-119 369

Find 97 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTCTCTCCATTGTTTC+TGG 0.083637 1.2:+58129592 None:intergenic
AAGATGTTATCTTATCATTT+AGG 0.224670 1.2:-58129900 MS.gene066018:CDS
GCCTCTTCTATGTTGTTTCT+TGG 0.226248 1.2:+58129739 None:intergenic
TTAGCATTAGAAGGGAATTA+AGG 0.229003 1.2:-58131037 MS.gene066018:CDS
CTTTAGATCAAAGCGGAAAA+TGG 0.229271 1.2:-58129015 MS.gene066018:CDS
ACTTCTCTACAAAGCTGATT+TGG 0.244443 1.2:-58127722 MS.gene066018:CDS
AAATCTAGGAACTGCAAATA+AGG 0.308744 1.2:-58128879 MS.gene066018:CDS
ATCAAACTTGCCACATGGTT+TGG 0.348661 1.2:+58127865 None:intergenic
AAAAGGTGTTATTGTCTAAA+GGG 0.350616 1.2:+58127628 None:intergenic
GGCTAAATCGTTGCAAACTC+TGG 0.351732 1.2:-58130408 MS.gene066018:CDS
CTTCTCTACAAAGCTGATTT+GGG 0.359543 1.2:-58127721 MS.gene066018:CDS
TGCAATCTAGAAGCGGAATA+AGG 0.365185 1.2:+58128587 None:intergenic
GCTATTGCAAATTGTTTACT+AGG 0.372778 1.2:-58129337 MS.gene066018:CDS
GGAAAGCCTTGCTTTATCAT+TGG 0.376906 1.2:-58129879 MS.gene066018:CDS
TTGTGGACTGCGTTTATTAT+CGG 0.382742 1.2:+58130496 None:intergenic
GAAGACTAGAAATGGAAGTT+TGG 0.389941 1.2:-58128691 MS.gene066018:CDS
TAGGAAGCTAGAGCCTTGTT+AGG 0.391721 1.2:-58130632 MS.gene066018:CDS
CAAACTCTGGGAAGGTTTCA+AGG 0.404094 1.2:-58130395 MS.gene066018:intron
GGAAGACTTGAGTATCAAAA+AGG 0.405055 1.2:-58130611 MS.gene066018:CDS
TCTTTCGCTCTGAGTGTTTG+TGG 0.407566 1.2:-58129655 MS.gene066018:CDS
TCGCGACAGAAGACTAGAAA+TGG 0.422836 1.2:-58128699 MS.gene066018:CDS
AGGCGAGCATATAGTTGCTT+TGG 0.422943 1.2:-58129533 MS.gene066018:CDS
TAGAACTGCTTCCGGAGTTA+TGG 0.430356 1.2:-58129942 MS.gene066018:CDS
GCTGCACTTCATGTATTTGA+AGG 0.441433 1.2:-58130578 MS.gene066018:CDS
TCATCTGCATGGTACAATCT+TGG 0.445464 1.2:-58127745 MS.gene066018:CDS
CATCAGAGTCCCTTGCAACT+AGG 0.452176 1.2:-58130956 MS.gene066018:CDS
CGCAAAGAAACTGATTAAGC+TGG 0.463190 1.2:-58129131 MS.gene066018:CDS
GCATGGAAAATGTAATCAAA+TGG 0.470470 1.2:-58129362 MS.gene066018:CDS
AAATGCTGTAGAACTGCTTC+CGG 0.471565 1.2:-58129950 MS.gene066018:CDS
ATCAGAGTCCCTTGCAACTA+GGG 0.473346 1.2:-58130955 MS.gene066018:CDS
TGATAAAGTGTGTGTGTTCA+AGG 0.476700 1.2:-58131010 MS.gene066018:CDS
TTTAGATCAAAGCGGAAAAT+GGG 0.477721 1.2:-58129014 MS.gene066018:CDS
TATTGTCTAAAGGGTTCAAT+GGG 0.486431 1.2:+58127637 None:intergenic
TTATTGTCTAAAGGGTTCAA+TGG 0.487445 1.2:+58127636 None:intergenic
ATCAACTGCAAGAATACAAA+AGG 0.489122 1.2:-58129842 MS.gene066018:CDS
ACAGCATGTATTGACATAGA+AGG 0.491807 1.2:+58130461 None:intergenic
AACTGCAAATAAGGTTATGA+AGG 0.507160 1.2:-58128870 MS.gene066018:intron
AGATTTAGCAAGACAAACTT+CGG 0.507247 1.2:+58128622 None:intergenic
GCTCTTTGTTACTGCGGTGA+AGG 0.509858 1.2:-58129553 MS.gene066018:CDS
CAAAGATTAAGAACAATGTA+AGG 0.511122 1.2:+58129199 None:intergenic
GGAATTATTTCCAGAAACAA+TGG 0.522616 1.2:-58129602 MS.gene066018:CDS
AAGTGGTTATTTAAACTATG+AGG 0.522868 1.2:-58130832 MS.gene066018:intron
GCTAAATCGTTGCAAACTCT+GGG 0.526535 1.2:-58130407 MS.gene066018:CDS
GAATCCTCTCTACGTGAAAG+TGG 0.526854 1.2:-58130849 MS.gene066018:CDS
GCTTGTGTTCTGAGAAAACT+TGG 0.530375 1.2:-58127835 MS.gene066018:CDS
AAACACTCAGAGCGAAAGAA+AGG 0.530554 1.2:+58129659 None:intergenic
CAAAGCGGAAAATGGGATCA+AGG 0.534119 1.2:-58129007 MS.gene066018:CDS
GCTTTAATGCATCAGTGAGA+AGG 0.537010 1.2:+58127782 None:intergenic
CTCGGTATACTCAGATTGCA+TGG 0.538524 1.2:-58129476 MS.gene066018:CDS
AATCTGCATTACCAGAAGGT+TGG 0.547530 1.2:-58130017 MS.gene066018:CDS
ATAACCACTTTCACGTAGAG+AGG 0.556218 1.2:+58130845 None:intergenic
CCACTTCGCTCTCAGTTGAA+CGG 0.557614 1.2:-58129772 MS.gene066018:CDS
AGCTTCTGAGAAATTGATGA+AGG 0.560809 1.2:-58129230 MS.gene066018:CDS
ATACTCAAGTCTTCCTAACA+AGG 0.561665 1.2:+58130619 None:intergenic
CTGAATAGTCCCTAGTTGCA+AGG 0.563955 1.2:+58130946 None:intergenic
GCTTCTAGATTGCACTCCAC+AGG 0.564915 1.2:-58128578 MS.gene066018:intron
TGATTTGGGAACATCAGCAT+TGG 0.571232 1.2:-58127707 MS.gene066018:CDS
AGGTGAAAATGATACAAAGT+TGG 0.571771 1.2:-58130895 MS.gene066018:CDS
GACACTAGCTCAACAAGTTG+AGG 0.581000 1.2:-58129623 MS.gene066018:CDS
GGCATCATGCCACCGTGACA+AGG 0.582269 1.2:+58128643 None:intergenic
CATCTTGAGGTGAGCCTGCG+AGG 0.583442 1.2:+58129917 None:intergenic
AATCGTTGCAAACTCTGGGA+AGG 0.586333 1.2:-58130403 MS.gene066018:CDS
TTTGTACAGCGGCTACGAAG+CGG 0.590359 1.2:-58129803 MS.gene066018:CDS
AAACTGATTAAGCTGGAAGG+TGG 0.590664 1.2:-58129124 MS.gene066018:CDS
AAGATTCCAATGATAAAGCA+AGG 0.591180 1.2:+58129873 None:intergenic
AGTGGTTATTCATCTCGTCC+AGG 0.592091 1.2:-58130915 MS.gene066018:CDS
AATGATAAGATAACATCTTG+AGG 0.602817 1.2:+58129904 None:intergenic
GGTTTACTTTATGAAGCAAG+AGG 0.603995 1.2:-58127937 MS.gene066018:CDS
TGAATAGTCCCTAGTTGCAA+GGG 0.604887 1.2:+58130947 None:intergenic
GTTGAATCTGCATTACCAGA+AGG 0.604979 1.2:-58130021 MS.gene066018:CDS
CCGGAGTTATGGAACCTCGC+AGG 0.605747 1.2:-58129931 MS.gene066018:CDS
TCAAAAGAAGTTTGTAGATG+CGG 0.610615 1.2:-58129056 MS.gene066018:CDS
AACAAGGTTTGTGTCGAAGA+CGG 0.611581 1.2:-58129418 MS.gene066018:CDS
TTGATATCAAACTTGCCACA+TGG 0.611629 1.2:+58127860 None:intergenic
AAGGCAATTTCTCAGATGCA+TGG 0.611767 1.2:-58129379 MS.gene066018:CDS
GCCAAGAAACAACATAGAAG+AGG 0.614198 1.2:-58129740 MS.gene066018:CDS
TTCAACTGAGAGCGAAGTGG+AGG 0.614284 1.2:+58129775 None:intergenic
CCTGCGAGGTTCCATAACTC+CGG 0.616519 1.2:+58129931 None:intergenic
GAAGGTGGGTCGAGTATTAG+CGG 0.617728 1.2:-58129109 MS.gene066018:CDS
GACTATTCAGCATCAGCAAG+TGG 0.619590 1.2:-58130933 MS.gene066018:CDS
ATGTGTACACAGCCTTGTCA+CGG 0.620003 1.2:-58128655 MS.gene066018:CDS
ACAAAACAAACTCATCTGCA+TGG 0.622329 1.2:-58127756 MS.gene066018:CDS
AACTGATTAAGCTGGAAGGT+GGG 0.623802 1.2:-58129123 MS.gene066018:CDS
GATAAAGTGTGTGTGTTCAA+GGG 0.624345 1.2:-58131009 MS.gene066018:CDS
ACTCTAGCTCTTTGTTACTG+CGG 0.637326 1.2:-58129559 MS.gene066018:CDS
TGTGTTCTGAGAAAACTTGG+TGG 0.639416 1.2:-58127832 MS.gene066018:CDS
AAGAAACTGATTAAGCTGGA+AGG 0.640610 1.2:-58129127 MS.gene066018:CDS
CCGTTCAACTGAGAGCGAAG+TGG 0.647279 1.2:+58129772 None:intergenic
GCTAAGATTCAGATTGCACA+AGG 0.653500 1.2:-58128965 MS.gene066018:CDS
TGTGGAGTGCAATCTAGAAG+CGG 0.658093 1.2:+58128580 None:intergenic
GAAGGCACTGAATCACGTTG+TGG 0.672499 1.2:+58130479 None:intergenic
GATGCTGCTTTAGATCAAAG+CGG 0.675910 1.2:-58129022 MS.gene066018:CDS
AGATATTGAGCCAAACCATG+TGG 0.706345 1.2:-58127875 MS.gene066018:CDS
GCGGATATAAACTACTAGCG+CGG 0.708738 1.2:-58129090 MS.gene066018:CDS
TGACAAGGCTGTGTACACAT+CGG 0.711396 1.2:+58128658 None:intergenic
TGTACACAGCCTTGTCACGG+TGG 0.720070 1.2:-58128652 MS.gene066018:CDS
GGTATACTCAGATTGCATGG+AGG 0.769198 1.2:-58129473 MS.gene066018:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACTTATACAAAAATG+TGG + chr1.2:58130514-58130533 None:intergenic 15.0%
!!! AGTAAAAAATTTAAGACAAA+CGG + chr1.2:58130161-58130180 None:intergenic 15.0%
!!! TTAAATCTATGTTTTAATAC+AGG - chr1.2:58129936-58129955 MS.gene066018:CDS 15.0%
!! AAGATGTTATCTTATCATTT+AGG - chr1.2:58128807-58128826 MS.gene066018:intron 20.0%
!! AAGTAATTGAATATAAGTGT+TGG + chr1.2:58128438-58128457 None:intergenic 20.0%
! AAAACAAATCACAAACATGA+TGG - chr1.2:58130271-58130290 MS.gene066018:intron 25.0%
! AAGTGGTTATTTAAACTATG+AGG - chr1.2:58127875-58127894 MS.gene066018:CDS 25.0%
! AATGATAAGATAACATCTTG+AGG + chr1.2:58128806-58128825 None:intergenic 25.0%
! AGAAAAAGTTTAGCATTAGA+AGG - chr1.2:58127661-58127680 MS.gene066018:CDS 25.0%
! CAAAGATTAAGAACAATGTA+AGG + chr1.2:58129511-58129530 None:intergenic 25.0%
! CAAGTCCATAATAAAAATCT+AGG - chr1.2:58129814-58129833 MS.gene066018:CDS 25.0%
! GAAAAAGTTTAGCATTAGAA+GGG - chr1.2:58127662-58127681 MS.gene066018:CDS 25.0%
! GATTTCGTATATAGTTACTT+AGG + chr1.2:58128363-58128382 None:intergenic 25.0%
! TCAATAAGTTAAGTTTATGC+AGG - chr1.2:58130749-58130768 MS.gene066018:intron 25.0%
! TTTGAAAAATAGAGAGAACT+CGG - chr1.2:58129213-58129232 MS.gene066018:CDS 25.0%
!! CAGTTCCTAGATTTTTATTA+TGG + chr1.2:58129822-58129841 None:intergenic 25.0%
!! GATATAGACATTTTCATCTT+TGG + chr1.2:58128177-58128196 None:intergenic 25.0%
!! TTTGTTAAGACAATTGCTTT+TGG + chr1.2:58130537-58130556 None:intergenic 25.0%
!!! ACAATCTGAAACAAAGTTTT+CGG + chr1.2:58128717-58128736 None:intergenic 25.0%
!!! GCTTTTTTTTTTTTTTGCTG+TGG + chr1.2:58130594-58130613 None:intergenic 25.0%
AAAAATTTGTGCAGACAACA+AGG - chr1.2:58129273-58129292 MS.gene066018:CDS 30.0%
AAATCTAGGAACTGCAAATA+AGG - chr1.2:58129828-58129847 MS.gene066018:CDS 30.0%
AACTGCAAATAAGGTTATGA+AGG - chr1.2:58129837-58129856 MS.gene066018:CDS 30.0%
AAGATTCCAATGATAAAGCA+AGG + chr1.2:58128837-58128856 None:intergenic 30.0%
AGATTTAGCAAGACAAACTT+CGG + chr1.2:58130088-58130107 None:intergenic 30.0%
AGGTGAAAATGATACAAAGT+TGG - chr1.2:58127812-58127831 MS.gene066018:CDS 30.0%
AGTCTATATACTCAGACAAA+TGG + chr1.2:58130234-58130253 None:intergenic 30.0%
ATCAACTGCAAGAATACAAA+AGG - chr1.2:58128865-58128884 MS.gene066018:intron 30.0%
GCATGGAAAATGTAATCAAA+TGG - chr1.2:58129345-58129364 MS.gene066018:CDS 30.0%
GCTATTGCAAATTGTTTACT+AGG - chr1.2:58129370-58129389 MS.gene066018:CDS 30.0%
GGAATTATTTCCAGAAACAA+TGG - chr1.2:58129105-58129124 MS.gene066018:CDS 30.0%
GGTTATTTAAACTATGAGGT+TGG - chr1.2:58127879-58127898 MS.gene066018:CDS 30.0%
TAAGTTCATGTTTATGTCTG+CGG + chr1.2:58130674-58130693 None:intergenic 30.0%
TATTGTCTAAAGGGTTCAAT+GGG + chr1.2:58131073-58131092 None:intergenic 30.0%
TCAAAAGAAGTTTGTAGATG+CGG - chr1.2:58129651-58129670 MS.gene066018:CDS 30.0%
TGCTTAGTTTACAACACAAT+TGG - chr1.2:58128581-58128600 MS.gene066018:CDS 30.0%
TGTTATTGAAAGTCAAGCTA+GGG + chr1.2:58130184-58130203 None:intergenic 30.0%
TTAAACTGTTCATCCAAACA+TGG + chr1.2:58127970-58127989 None:intergenic 30.0%
TTAGCATTAGAAGGGAATTA+AGG - chr1.2:58127670-58127689 MS.gene066018:CDS 30.0%
TTATTGTCTAAAGGGTTCAA+TGG + chr1.2:58131074-58131093 None:intergenic 30.0%
TTTAGATCAAAGCGGAAAAT+GGG - chr1.2:58129693-58129712 MS.gene066018:CDS 30.0%
! AACTTTGTATCATTTTCACC+TGG + chr1.2:58127813-58127832 None:intergenic 30.0%
! CTAGATGAACTTTTCCTTAT+AGG - chr1.2:58128056-58128075 MS.gene066018:intron 30.0%
! TCTGACTTGAAACTAGAATT+TGG - chr1.2:58130417-58130436 MS.gene066018:CDS 30.0%
! TTGTTATTGAAAGTCAAGCT+AGG + chr1.2:58130185-58130204 None:intergenic 30.0%
! TTTCAAGTCAGAATCAATTC+TGG + chr1.2:58130409-58130428 None:intergenic 30.0%
!! CAATCTGAAACAAAGTTTTC+GGG + chr1.2:58128716-58128735 None:intergenic 30.0%
AAGAAACTGATTAAGCTGGA+AGG - chr1.2:58129580-58129599 MS.gene066018:CDS 35.0%
ACAAAACAAACTCATCTGCA+TGG - chr1.2:58130951-58130970 MS.gene066018:CDS 35.0%
ACTTCTCTACAAAGCTGATT+TGG - chr1.2:58130985-58131004 MS.gene066018:CDS 35.0%
AGAGGAGAACTGAACTTATA+AGG + chr1.2:58130209-58130228 None:intergenic 35.0%
ATACTCAAGTCTTCCTAACA+AGG + chr1.2:58128091-58128110 None:intergenic 35.0%
CAAACATGGTCTAAGTACAT+GGG + chr1.2:58127956-58127975 None:intergenic 35.0%
CTTTAGATCAAAGCGGAAAA+TGG - chr1.2:58129692-58129711 MS.gene066018:CDS 35.0%
GAAGACTAGAAATGGAAGTT+TGG - chr1.2:58130016-58130035 MS.gene066018:CDS 35.0%
GAGGAGAACTGAACTTATAA+GGG + chr1.2:58130208-58130227 None:intergenic 35.0%
GATAAAGTGTGTGTGTTCAA+GGG - chr1.2:58127698-58127717 MS.gene066018:CDS 35.0%
GGAAGACTTGAGTATCAAAA+AGG - chr1.2:58128096-58128115 MS.gene066018:intron 35.0%
GGTTTACTTTATGAAGCAAG+AGG - chr1.2:58130770-58130789 MS.gene066018:intron 35.0%
GTGTACAATTTAGCGTAGTT+TGG - chr1.2:58130293-58130312 MS.gene066018:intron 35.0%
TGATAAAGTGTGTGTGTTCA+AGG - chr1.2:58127697-58127716 MS.gene066018:CDS 35.0%
TTGATATCAAACTTGCCACA+TGG + chr1.2:58130850-58130869 None:intergenic 35.0%
! ACAGCATGTATTGACATAGA+AGG + chr1.2:58128249-58128268 None:intergenic 35.0%
! AGCTTCTGAGAAATTGATGA+AGG - chr1.2:58129477-58129496 MS.gene066018:CDS 35.0%
! CTTCTCTACAAAGCTGATTT+GGG - chr1.2:58130986-58131005 MS.gene066018:CDS 35.0%
! TAACACAAAGTACCAACCAA+CGG - chr1.2:58129887-58129906 MS.gene066018:CDS 35.0%
! TTGTGGACTGCGTTTATTAT+CGG + chr1.2:58128214-58128233 None:intergenic 35.0%
!! CGGAATCAAATTTTCAAGCA+AGG - chr1.2:58129309-58129328 MS.gene066018:CDS 35.0%
!! TAGTTGCTTTGGATCTTTTG+AGG - chr1.2:58129185-58129204 MS.gene066018:CDS 35.0%
!!! GCTTTGTTTCTTTTGTACAG+CGG - chr1.2:58128893-58128912 MS.gene066018:CDS 35.0%
!!! TCTTGAAGCTGTTTTTCTCA+AGG - chr1.2:58128278-58128297 MS.gene066018:intron 35.0%
AAACACTCAGAGCGAAAGAA+AGG + chr1.2:58129051-58129070 None:intergenic 40.0%
AAACTGATTAAGCTGGAAGG+TGG - chr1.2:58129583-58129602 MS.gene066018:CDS 40.0%
AAATGCTGTAGAACTGCTTC+CGG - chr1.2:58128757-58128776 MS.gene066018:intron 40.0%
AACAAGGTTTGTGTCGAAGA+CGG - chr1.2:58129289-58129308 MS.gene066018:CDS 40.0%
AACTGATTAAGCTGGAAGGT+GGG - chr1.2:58129584-58129603 MS.gene066018:CDS 40.0%
AAGGCAATTTCTCAGATGCA+TGG - chr1.2:58129328-58129347 MS.gene066018:CDS 40.0%
AATCTGCATTACCAGAAGGT+TGG - chr1.2:58128690-58128709 MS.gene066018:CDS 40.0%
AGATATTGAGCCAAACCATG+TGG - chr1.2:58130832-58130851 MS.gene066018:intron 40.0%
AGTATCAATGTCATGTCTGG+TGG - chr1.2:58128493-58128512 MS.gene066018:intron 40.0%
AGTTCCAATCATAGGGTTAG+AGG + chr1.2:58130451-58130470 None:intergenic 40.0%
ATAACCACTTTCACGTAGAG+AGG + chr1.2:58127865-58127884 None:intergenic 40.0%
ATACTCAGACAAATGGCAAG+AGG + chr1.2:58130227-58130246 None:intergenic 40.0%
ATCAAACTTGCCACATGGTT+TGG + chr1.2:58130845-58130864 None:intergenic 40.0%
CCAAACATGGTCTAAGTACA+TGG + chr1.2:58127957-58127976 None:intergenic 40.0%
CCATGTACTTAGACCATGTT+TGG - chr1.2:58127954-58127973 MS.gene066018:intron 40.0%
CGCAAAGAAACTGATTAAGC+TGG - chr1.2:58129576-58129595 MS.gene066018:CDS 40.0%
GCCAAGAAACAACATAGAAG+AGG - chr1.2:58128967-58128986 MS.gene066018:CDS 40.0%
GCTAAATCGTTGCAAACTCT+GGG - chr1.2:58128300-58128319 MS.gene066018:intron 40.0%
GCTAAGATTCAGATTGCACA+AGG - chr1.2:58129742-58129761 MS.gene066018:CDS 40.0%
GCTGCACTTCATGTATTTGA+AGG - chr1.2:58128129-58128148 MS.gene066018:intron 40.0%
GCTTTAATGCATCAGTGAGA+AGG + chr1.2:58130928-58130947 None:intergenic 40.0%
GGAAAGCCTTGCTTTATCAT+TGG - chr1.2:58128828-58128847 MS.gene066018:intron 40.0%
GTCAGTATCAATGTCATGTC+TGG - chr1.2:58128490-58128509 MS.gene066018:intron 40.0%
GTTGAATCTGCATTACCAGA+AGG - chr1.2:58128686-58128705 MS.gene066018:CDS 40.0%
TAACCCTATGATTGGAACTG+CGG - chr1.2:58130452-58130471 MS.gene066018:CDS 40.0%
TCATCTGCATGGTACAATCT+TGG - chr1.2:58130962-58130981 MS.gene066018:CDS 40.0%
TCTCTTCTCTCCATTGTTTC+TGG + chr1.2:58129118-58129137 None:intergenic 40.0%
TGAATAGTCCCTAGTTGCAA+GGG + chr1.2:58127763-58127782 None:intergenic 40.0%
TGCAATCTAGAAGCGGAATA+AGG + chr1.2:58130123-58130142 None:intergenic 40.0%
TTTGCCTCTAACCCTATGAT+TGG - chr1.2:58130444-58130463 MS.gene066018:CDS 40.0%
! AAAGTACCAACCAACGGAAA+AGG - chr1.2:58129893-58129912 MS.gene066018:CDS 40.0%
! AAGTTTCCTTTTCCGTTGGT+TGG + chr1.2:58129902-58129921 None:intergenic 40.0%
! ACTACTAGCGCGGATTTTAT+CGG - chr1.2:58129627-58129646 MS.gene066018:CDS 40.0%
! CTCTAAGTTTCCTTTTCCGT+TGG + chr1.2:58129906-58129925 None:intergenic 40.0%
! TGATTTGGGAACATCAGCAT+TGG - chr1.2:58131000-58131019 MS.gene066018:CDS 40.0%
!! ACTCTAGCTCTTTGTTACTG+CGG - chr1.2:58129148-58129167 MS.gene066018:CDS 40.0%
!! GATGCTGCTTTAGATCAAAG+CGG - chr1.2:58129685-58129704 MS.gene066018:CDS 40.0%
!! GCCTCTTCTATGTTGTTTCT+TGG + chr1.2:58128971-58128990 None:intergenic 40.0%
!! GCTTGTGTTCTGAGAAAACT+TGG - chr1.2:58130872-58130891 MS.gene066018:CDS 40.0%
!! TAGTTTGGTTCCACTTTTGG+AGG - chr1.2:58130308-58130327 MS.gene066018:intron 40.0%
!! TGTGTTCTGAGAAAACTTGG+TGG - chr1.2:58130875-58130894 MS.gene066018:CDS 40.0%
AAGCAACCTTAGCACCTGTT+TGG - chr1.2:58130610-58130629 MS.gene066018:CDS 45.0%
AATTTCGCCTCCTCCAAAAG+TGG + chr1.2:58130321-58130340 None:intergenic 45.0%
ACATCACCATGCAACCAAAC+AGG + chr1.2:58130627-58130646 None:intergenic 45.0%
AGACAAACGGTATGTACCTG+TGG + chr1.2:58130148-58130167 None:intergenic 45.0%
AGGCGAGCATATAGTTGCTT+TGG - chr1.2:58129174-58129193 MS.gene066018:CDS 45.0%
AGTGGTTATTCATCTCGTCC+AGG - chr1.2:58127792-58127811 MS.gene066018:CDS 45.0%
ATCAGAGTCCCTTGCAACTA+GGG - chr1.2:58127752-58127771 MS.gene066018:CDS 45.0%
ATGCAACCAAACAGGTGCTA+AGG + chr1.2:58130619-58130638 None:intergenic 45.0%
CAAAGCGGAAAATGGGATCA+AGG - chr1.2:58129700-58129719 MS.gene066018:CDS 45.0%
CATCCGCAGTTCCAATCATA+GGG + chr1.2:58130458-58130477 None:intergenic 45.0%
CTCGGTATACTCAGATTGCA+TGG - chr1.2:58129231-58129250 MS.gene066018:CDS 45.0%
CTGAATAGTCCCTAGTTGCA+AGG + chr1.2:58127764-58127783 None:intergenic 45.0%
GAATCCTCTCTACGTGAAAG+TGG - chr1.2:58127858-58127877 MS.gene066018:CDS 45.0%
GACACTAGCTCAACAAGTTG+AGG - chr1.2:58129084-58129103 MS.gene066018:CDS 45.0%
GACTATTCAGCATCAGCAAG+TGG - chr1.2:58127774-58127793 MS.gene066018:CDS 45.0%
GCGGATATAAACTACTAGCG+CGG - chr1.2:58129617-58129636 MS.gene066018:CDS 45.0%
GGCTAAATCGTTGCAAACTC+TGG - chr1.2:58128299-58128318 MS.gene066018:intron 45.0%
GGTATACTCAGATTGCATGG+AGG - chr1.2:58129234-58129253 MS.gene066018:CDS 45.0%
TAGAACTGCTTCCGGAGTTA+TGG - chr1.2:58128765-58128784 MS.gene066018:intron 45.0%
TCATCCGCAGTTCCAATCAT+AGG + chr1.2:58130459-58130478 None:intergenic 45.0%
TCGCGACAGAAGACTAGAAA+TGG - chr1.2:58130008-58130027 MS.gene066018:CDS 45.0%
TGACAAGGCTGTGTACACAT+CGG + chr1.2:58130052-58130071 None:intergenic 45.0%
TGTGGAGTGCAATCTAGAAG+CGG + chr1.2:58130130-58130149 None:intergenic 45.0%
TTAGCACCTGTTTGGTTGCA+TGG - chr1.2:58130618-58130637 MS.gene066018:CDS 45.0%
! AATCGTTGCAAACTCTGGGA+AGG - chr1.2:58128304-58128323 MS.gene066018:intron 45.0%
! ATGTGTACACAGCCTTGTCA+CGG - chr1.2:58130052-58130071 MS.gene066018:CDS 45.0%
! CAAACTCTGGGAAGGTTTCA+AGG - chr1.2:58128312-58128331 MS.gene066018:intron 45.0%
! CAAGGCTCTAGCTTCCTATA+AGG + chr1.2:58128073-58128092 None:intergenic 45.0%
! TCTTTCGCTCTGAGTGTTTG+TGG - chr1.2:58129052-58129071 MS.gene066018:CDS 45.0%
!! GCGTAGTTTGGTTCCACTTT+TGG - chr1.2:58130305-58130324 MS.gene066018:intron 45.0%
!! TAGGAAGCTAGAGCCTTGTT+AGG - chr1.2:58128075-58128094 MS.gene066018:intron 45.0%
!! TTTGGTTCCACTTTTGGAGG+AGG - chr1.2:58130311-58130330 MS.gene066018:intron 45.0%
CATCAGAGTCCCTTGCAACT+AGG - chr1.2:58127751-58127770 MS.gene066018:CDS 50.0%
CCACTTCGCTCTCAGTTGAA+CGG - chr1.2:58128935-58128954 MS.gene066018:CDS 50.0%
GAAGGTGGGTCGAGTATTAG+CGG - chr1.2:58129598-58129617 MS.gene066018:CDS 50.0%
GCTCTTTGTTACTGCGGTGA+AGG - chr1.2:58129154-58129173 MS.gene066018:CDS 50.0%
GCTTCTAGATTGCACTCCAC+AGG - chr1.2:58130129-58130148 MS.gene066018:intron 50.0%
TTCAACTGAGAGCGAAGTGG+AGG + chr1.2:58128935-58128954 None:intergenic 50.0%
TTTGTACAGCGGCTACGAAG+CGG - chr1.2:58128904-58128923 MS.gene066018:CDS 50.0%
!! AAGTTTTCGGGCCAACCTTC+TGG + chr1.2:58128704-58128723 None:intergenic 50.0%
!! GAAGGCACTGAATCACGTTG+TGG + chr1.2:58128231-58128250 None:intergenic 50.0%
!! TGGTGCTACACACGCTACAA+CGG + chr1.2:58128418-58128437 None:intergenic 50.0%
CCGTTCAACTGAGAGCGAAG+TGG + chr1.2:58128938-58128957 None:intergenic 55.0%
CCTGCGAGGTTCCATAACTC+CGG + chr1.2:58128779-58128798 None:intergenic 55.0%
! TGTACACAGCCTTGTCACGG+TGG - chr1.2:58130055-58130074 MS.gene066018:CDS 55.0%
CATCTTGAGGTGAGCCTGCG+AGG + chr1.2:58128793-58128812 None:intergenic 60.0%
CCGGAGTTATGGAACCTCGC+AGG - chr1.2:58128776-58128795 MS.gene066018:intron 60.0%
GGCATCATGCCACCGTGACA+AGG + chr1.2:58130067-58130086 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 58127636 58131093 58127636 ID=MS.gene066018
chr1.2 mRNA 58127636 58131093 58127636 ID=MS.gene066018.t1;Parent=MS.gene066018
chr1.2 exon 58130833 58131093 58130833 ID=MS.gene066018.t1.exon1;Parent=MS.gene066018.t1
chr1.2 CDS 58130833 58131093 58130833 ID=cds.MS.gene066018.t1;Parent=MS.gene066018.t1
chr1.2 exon 58130396 58130651 58130396 ID=MS.gene066018.t1.exon2;Parent=MS.gene066018.t1
chr1.2 CDS 58130396 58130651 58130396 ID=cds.MS.gene066018.t1;Parent=MS.gene066018.t1
chr1.2 exon 58128871 58130078 58128871 ID=MS.gene066018.t1.exon3;Parent=MS.gene066018.t1
chr1.2 CDS 58128871 58130078 58128871 ID=cds.MS.gene066018.t1;Parent=MS.gene066018.t1
chr1.2 exon 58128579 58128732 58128579 ID=MS.gene066018.t1.exon4;Parent=MS.gene066018.t1
chr1.2 CDS 58128579 58128732 58128579 ID=cds.MS.gene066018.t1;Parent=MS.gene066018.t1
chr1.2 exon 58127636 58127958 58127636 ID=MS.gene066018.t1.exon5;Parent=MS.gene066018.t1
chr1.2 CDS 58127636 58127958 58127636 ID=cds.MS.gene066018.t1;Parent=MS.gene066018.t1
Gene Sequence

>MS.gene066018

ATGAGAGCTAAGAGTTTGATAAGTAAGAAAAAGTTTAGCATTAGAAGGGAATTAAGGAAGATGATAAAGTGTGTGTGTTCAAGGGAGAAGTTAAGTGTAGATGAACTGAATTATTCATCAGAGTCCCTTGCAACTAGGGACTATTCAGCATCAGCAAGTGGTTATTCATCTCGTCCAGGTGAAAATGATACAAAGTTGGATAATAGTAACATTGAAGAAGCAGAATCCTCTCTACGTGAAAGTGGTTATTTAAACTATGAGGTTGGATAAACATATTTCTTTCATCTTTTTTTGTATGTTTTTTATGCTGTGAAACTCCCATGTACTTAGACCATGTTTGGATGAACAGTTTAATTAAGTGTTTTTAGCTATTTTAAGTGTTTTTATGAATACTTGAAACTTATTCATTATAAGATGAAGCTAGATGAACTTTTCCTTATAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAAAAAGGCAACATCGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTCCAAAGATGAAAATGTCTATATCTAGAAAATGTGAATCCGATAATAAACGCAGTCCACAACGTGATTCAGTGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCGTTGCAAACTCTGGGAAGGTTTCAAGGTGCTTTTCTATCTTGTTTCTTAATTCCTAAGTAACTATATACGAAATCATCATCTTAATTATTTTGCACTTTATCTTCAACCGTTGTAGCGTGTGTAGCACCAACACTTATATTCAATTACTTCTATTTTTTCAAATTATTACTTGTGTCGACGTGTCAGTATCAATGTCATGTCTGGTGGTCATGTAACAGTGCTTCATAAACTGTAGTTTCTGTAAAGAGTCTTCAATCATGTGATGCGAACAATGCTTAGTTTACAACACAATTGGTTTGCACTTCGTGATTTTTATTGTGACTGTAAAATATTAATCTGCAGAAGCTGCTCAATCTTGCAAAACTATTTTAGACACAGTTGAATCTGCATTACCAGAAGGTTGGCCCGAAAACTTTGTTTCAGATTGTAAATTACAAGAGATAGTAACAAATGCTGTAGAACTGCTTCCGGAGTTATGGAACCTCGCAGGCTCACCTCAAGATGTTATCTTATCATTTAGGAAAGCCTTGCTTTATCATTGGAATCTTGACACTGAATCAACTGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTGTACAGCGGCTACGAAGCGGACTCTCCTCCACTTCGCTCTCAGTTGAACGGTTCGTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTACTTCTGATTCTGCTGAGAAATTCTAACGATCGTTCAATAATTCATCACCTTTCTTTCGCTCTGAGTGTTTGTGGTGAATTCATGACACTAGCTCAACAAGTTGAGGAATTATTTCCAGAAACAATGGAGAGAAGAGAAAGATATTACACTCTAGCTCTTTGTTACTGCGGTGAAGGCGAGCATATAGTTGCTTTGGATCTTTTGAGGAACTTTTTGAAAAATAGAGAGAACTCGGTATACTCAGATTGCATGGAGGAATTGCTATTAGCTTCAAAAATTTGTGCAGACAACAAGGTTTGTGTCGAAGACGGAATCAAATTTTCAAGCAAGGCAATTTCTCAGATGCATGGAAAATGTAATCAAATGGAAGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCAGCAAAATCGAAGTCAGTTACTTCTGAATCACAGAAAGTTTTGATACAATCTCAAGCATTTAGTGCTTTAAAAGCTTCTGAGAAATTGATGAAGGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTTGAATATGCTGAGCATAGAAAGTTGAGAGTTGCTTACGATCACGCAAAGAAACTGATTAAGCTGGAAGGTGGGTCGAGTATTAGCGGATATAAACTACTAGCGCGGATTTTATCGGCTCAAAAGAAGTTTGTAGATGCGGAGATAGTTATTGATGCTGCTTTAGATCAAAGCGGAAAATGGGATCAAGGAGAATTGTTGCGAACTAAAGCTAAGATTCAGATTGCACAAGGAAGATTAAAAAATGCTATTGAGACATACACTTTTTTTCTTGCGATTCTTCAAGTCCATAATAAAAATCTAGGAACTGCAAATAAGGTTATGAAGGTACACAGTTTTTCTTGCTATTCTTGAATAACACAAAGTACCAACCAACGGAAAAGGAAACTTAGAGAAACTTCATTTTAAATCTATGTTTTAATACAGGTATGATTATATTAGTTCTCTGATTTCTCTTTTGTACAGTGTAAGAGAAATCGCGACAGAAGACTAGAAATGGAAGTTTGGCATGATTTAGCCGATGTGTACACAGCCTTGTCACGGTGGCATGATGCCGAAGTTTGTCTTGCTAAATCTCAAGCTATTGATCCTTATTCCGCTTCTAGATTGCACTCCACAGGTACATACCGTTTGTCTTAAATTTTTTACTCCCTAGCTTGACTTTCAATAACAACCCTTATAAGTTCAGTTCTCCTCTTGCCATTTGTCTGAGTATATAGACTCTAAGTTCTTGATACTCAAAACAAATCACAAACATGATGGTGTACAATTTAGCGTAGTTTGGTTCCACTTTTGGAGGAGGCGAAATTGATTTCATATGTATTAGAATTTATTTTGACATGTTTTGATGTTTTCGAGTAGAATTAACTCGACTCCAGAATTGATTCTGACTTGAAACTAGAATTTGGAGATTTTGCCTCTAACCCTATGATTGGAACTGCGGATGAAATTCATTTATTGTGTTTCAAGACAACTTTCACCACATTTTTGTATAAGTTTATACCAAAAGCAATTGTCTTAACAAAATCTGCATTGTAATGTTAGAAAAAACATAATTGACCACAGCAAAAAAAAAAAAAAGCAACCTTAGCACCTGTTTGGTTGCATGGTGATGTACTATTTCTTGTGTCGCGATGTTGCCGCAGACATAAACATGAACTTAATTTTATTGAAGCTTAACATGTTCAGATGCAGTGTTCTTCACGTAGCAAAGTTCATCAATAAGTTAAGTTTATGCAGGTTTACTTTATGAAGCAAGAGGTCTTCATCAAGAAGCATTGAAATCATATAGAAAAGCATTAGATATTGAGCCAAACCATGTGGCAAGTTTGATATCAACAGCTTGTGTTCTGAGAAAACTTGGTGGTCAATCATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCATTAAAGCTTGACAAAACAAACTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTGGGAACATCAGCATTGGAAGCTGCTGAATGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCATCTCCCATTGAACCCTTTAGACAATAA
Protein sequence

>MS.gene066018.t1

MRAKSLISKKKFSIRRELRKMIKCVCSREKLSVDELNYSSESLATRDYSASASGYSSRPGENDTKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKMSISRKCESDNKRSPQRDSVPSMSIHAVSLLLEAVFLKAKSLQTLGRFQEAAQSCKTILDTVESALPEGWPENFVSDCKLQEIVTNAVELLPELWNLAGSPQDVILSFRKALLYHWNLDTESTARIQKEFALFLLYSGYEADSPPLRSQLNGSFVPRNNIEEAVLLLLILLRNSNDRSIIHHLSFALSVCGEFMTLAQQVEELFPETMERRERYYTLALCYCGEGEHIVALDLLRNFLKNRENSVYSDCMEELLLASKICADNKVCVEDGIKFSSKAISQMHGKCNQMEAIANCLLGVLLSAKSKSVTSESQKVLIQSQAFSALKASEKLMKENDPYIVLNLCLEYAEHRKLRVAYDHAKKLIKLEGGSSISGYKLLARILSAQKKFVDAEIVIDAALDQSGKWDQGELLRTKAKIQIAQGRLKNAIETYTFFLAILQVHNKNLGTANKVMKCKRNRDRRLEMEVWHDLADVYTALSRWHDAEVCLAKSQAIDPYSASRLHSTGLLYEARGLHQEALKSYRKALDIEPNHVASLISTACVLRKLGGQSSSSIVRSLLTDALKLDKTNSSAWYNLGLLYKADLGTSALEAAECFEAAVFLEESSPIEPFRQ