Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066126.t1 | XP_018459315.1 | 45.3 | 342 | 162 | 6 | 1 | 340 | 1 | 319 | 2.30E-64 | 256.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066126.t1 | A0A2N9I863 | 42.7 | 354 | 165 | 8 | 1 | 337 | 1 | 333 | 8.1e-64 | 253.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060253 | MS.gene066126 | 0.812569 | 3.97E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066126.t1 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 1.76e-31 | 116 |
MS.gene066126.t1 | MTR_4g037355 | 40.441 | 136 | 61 | 4 | 155 | 290 | 1 | 116 | 1.50e-22 | 92.0 |
MS.gene066126.t1 | MTR_5g061150 | 35.354 | 99 | 64 | 0 | 52 | 150 | 38 | 136 | 3.99e-18 | 80.1 |
MS.gene066126.t1 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 1.20e-17 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 66 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATCAATGGAACAAATTA+AGG | 0.196151 | 1.4:+47232656 | MS.gene066126:CDS |
AGTCTTATTGCCCTCATTAA+TGG | 0.201947 | 1.4:+47232636 | MS.gene066126:CDS |
AAAGTTGTGGCGTTTATTTC+AGG | 0.203868 | 1.4:-47232952 | None:intergenic |
GATAAAATTAAGGCAAGATT+TGG | 0.254283 | 1.4:+47232601 | MS.gene066126:CDS |
GATTCTTGAGGGAGACGATT+TGG | 0.271296 | 1.4:+47232459 | MS.gene066126:CDS |
CTCAATTAAGTTGTTGTTCC+AGG | 0.274617 | 1.4:-47232410 | None:intergenic |
CACGGCCTCCACCACGAAAA+TGG | 0.277262 | 1.4:-47233068 | None:intergenic |
CATAGGAGAAGAAATTAATA+TGG | 0.282788 | 1.4:+47233362 | MS.gene066126:CDS |
AAGACAGGTAATATCATTCT+TGG | 0.288759 | 1.4:-47233325 | None:intergenic |
ATTTACTGAATACTCTGATT+TGG | 0.313227 | 1.4:+47232846 | MS.gene066126:CDS |
CTTGAGGTTGCTGATTTCAT+AGG | 0.313595 | 1.4:+47233345 | MS.gene066126:CDS |
CTTGATGATTCTTGTTGGTT+TGG | 0.339105 | 1.4:-47233128 | None:intergenic |
GAAGAGGTTATATGAATTAT+AGG | 0.339571 | 1.4:+47233091 | MS.gene066126:CDS |
GGGAGATGTCCCAGAGGAAT+TGG | 0.345733 | 1.4:+47232480 | MS.gene066126:CDS |
ATTCTTGAGGGAGACGATTT+GGG | 0.354692 | 1.4:+47232460 | MS.gene066126:CDS |
CGTGGTGGTTATGCTCGTTT+TGG | 0.361113 | 1.4:+47233012 | MS.gene066126:CDS |
TTTACCTTGATGATTCTTGT+TGG | 0.362649 | 1.4:-47233133 | None:intergenic |
GATTTCTAGAGGGACCTTCC+TGG | 0.373636 | 1.4:-47233167 | None:intergenic |
CATAACCACCACGTCCTCTT+TGG | 0.378867 | 1.4:-47233002 | None:intergenic |
TATAACTGAAAAGGAAAAGT+TGG | 0.422757 | 1.4:+47232759 | MS.gene066126:CDS |
CGTGGTGGAGGCCGTGGAAG+AGG | 0.431707 | 1.4:+47233075 | MS.gene066126:CDS |
TGCCCTCATTAATGGATCAA+TGG | 0.432677 | 1.4:+47232644 | MS.gene066126:CDS |
ATAAAATTAAGGCAAGATTT+GGG | 0.433877 | 1.4:+47232602 | MS.gene066126:CDS |
AGATACAAAGAATCTGTTGA+TGG | 0.446469 | 1.4:+47233267 | MS.gene066126:CDS |
TGGCAAAACTATAACTGAAA+AGG | 0.467052 | 1.4:+47232750 | MS.gene066126:CDS |
AACCACCAGTTGCGTCCTAC+AGG | 0.478404 | 1.4:+47232916 | MS.gene066126:CDS |
TTGTTCCTGTAGGACGCAAC+TGG | 0.480977 | 1.4:-47232921 | None:intergenic |
AGACAGGTAATATCATTCTT+GGG | 0.483328 | 1.4:-47233324 | None:intergenic |
ATCAAGCACCACATTGATGA+TGG | 0.492315 | 1.4:+47232532 | MS.gene066126:CDS |
TGCAACAACAATATAGAATG+AGG | 0.496917 | 1.4:+47232821 | MS.gene066126:CDS |
CTGGAGACAACTACATAACC+TGG | 0.502040 | 1.4:+47232392 | MS.gene066126:CDS |
AACAAGAATCATCAAGGTAA+AGG | 0.504207 | 1.4:+47233135 | MS.gene066126:CDS |
GTTCCATTGATCCATTAATG+AGG | 0.509644 | 1.4:-47232647 | None:intergenic |
CAAAGAATCTGTTGATGGAA+AGG | 0.510693 | 1.4:+47233272 | MS.gene066126:CDS |
TGTTATAGATGCGGAAAGAA+AGG | 0.513070 | 1.4:+47233201 | MS.gene066126:CDS |
ATCTGTTGATGGAAAGGAAA+GGG | 0.513746 | 1.4:+47233278 | MS.gene066126:CDS |
GAAATCAGCAACCTCAAGAC+AGG | 0.522716 | 1.4:-47233340 | None:intergenic |
TTCCATTGATCCATTAATGA+GGG | 0.533283 | 1.4:-47232646 | None:intergenic |
GATGCGGAAAGAAAGGTCAT+TGG | 0.533423 | 1.4:+47233208 | MS.gene066126:CDS |
GGACTCGACAAGATTCTTGA+GGG | 0.539594 | 1.4:+47232448 | MS.gene066126:CDS |
TTGGTTTGGTCATATTTGAG+AGG | 0.544297 | 1.4:-47233114 | None:intergenic |
CGTGGTCGAGGCAGAAGTCA+TGG | 0.554869 | 1.4:+47233039 | MS.gene066126:CDS |
AATTGAGTATCTTGCATGTG+AGG | 0.565013 | 1.4:+47232426 | MS.gene066126:CDS |
GGATATGTCATTGTTCCTGT+AGG | 0.570307 | 1.4:-47232931 | None:intergenic |
CAAACCAACAAGAATCATCA+AGG | 0.574004 | 1.4:+47233129 | MS.gene066126:CDS |
AGGTAAAGGTAAAAGCATCC+AGG | 0.575090 | 1.4:+47233149 | MS.gene066126:CDS |
ATTGAGTATCTTGCATGTGA+GGG | 0.575966 | 1.4:+47232427 | MS.gene066126:CDS |
GCAACAACAATATAGAATGA+GGG | 0.579939 | 1.4:+47232822 | MS.gene066126:CDS |
GAATGATATTACCTGTCTTG+AGG | 0.586627 | 1.4:+47233329 | MS.gene066126:CDS |
TTCCTGTAGGACGCAACTGG+TGG | 0.593030 | 1.4:-47232918 | None:intergenic |
AATTCATATAACCTCTTCCA+CGG | 0.595635 | 1.4:-47233086 | None:intergenic |
ACGCCCTTGATTAAAAGTTG+TGG | 0.608515 | 1.4:-47232965 | None:intergenic |
GCAATATCACTTGAGATGCA+TGG | 0.608661 | 1.4:-47232801 | None:intergenic |
TATAATCGCCAAAGAGGACG+TGG | 0.608957 | 1.4:+47232994 | MS.gene066126:CDS |
GGGACTCGACAAGATTCTTG+AGG | 0.610766 | 1.4:+47232447 | MS.gene066126:CDS |
TGTTGATGGAAAGGAAAGGG+AGG | 0.620365 | 1.4:+47233281 | MS.gene066126:CDS |
ACGATCATCATGATTTCTAG+AGG | 0.627654 | 1.4:-47233178 | None:intergenic |
GTCATTGGTCTAAAGCATGT+AGG | 0.629444 | 1.4:+47233223 | MS.gene066126:CDS |
GATGATCGTTGTTATAGATG+CGG | 0.637106 | 1.4:+47233192 | MS.gene066126:CDS |
CGATCATCATGATTTCTAGA+GGG | 0.638172 | 1.4:-47233177 | None:intergenic |
GGTGGTTATAATCGCCAAAG+AGG | 0.642086 | 1.4:+47232988 | MS.gene066126:CDS |
AATCTGTTGATGGAAAGGAA+AGG | 0.653361 | 1.4:+47233277 | MS.gene066126:CDS |
AAAGGTAAAAGCATCCAGGA+AGG | 0.661440 | 1.4:+47233153 | MS.gene066126:CDS |
AATCGCCAAAGAGGACGTGG+TGG | 0.703312 | 1.4:+47232997 | MS.gene066126:CDS |
TTTGTAATCCATCATCAATG+TGG | 0.715751 | 1.4:-47232540 | None:intergenic |
CGATTTGGGAGATGTCCCAG+AGG | 0.725435 | 1.4:+47232474 | MS.gene066126:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATGTTTAAAATTTTGAAT+TGG | - | chr1.4:47232372-47232391 | None:intergenic | 10.0% |
!!! | TTCAAAATTTTAAACATAAC+TGG | + | chr1.4:47232373-47232392 | MS.gene066126:CDS | 15.0% |
!! | ATAAAATTAAGGCAAGATTT+GGG | + | chr1.4:47232602-47232621 | MS.gene066126:CDS | 20.0% |
!!! | AATTTTATCCCATAAAATCT+TGG | - | chr1.4:47232590-47232609 | None:intergenic | 20.0% |
!!! | ATTTTATCCCATAAAATCTT+GGG | - | chr1.4:47232589-47232608 | None:intergenic | 20.0% |
!!! | GATTTTATGGGATAAAATTA+AGG | + | chr1.4:47232591-47232610 | MS.gene066126:CDS | 20.0% |
! | ATTTACTGAATACTCTGATT+TGG | + | chr1.4:47232846-47232865 | MS.gene066126:CDS | 25.0% |
! | CATAGGAGAAGAAATTAATA+TGG | + | chr1.4:47233362-47233381 | MS.gene066126:CDS | 25.0% |
! | GAAGAGGTTATATGAATTAT+AGG | + | chr1.4:47233091-47233110 | MS.gene066126:CDS | 25.0% |
! | GATAAAATTAAGGCAAGATT+TGG | + | chr1.4:47232601-47232620 | MS.gene066126:CDS | 25.0% |
! | TATAACTGAAAAGGAAAAGT+TGG | + | chr1.4:47232759-47232778 | MS.gene066126:CDS | 25.0% |
!! | AAAAGATCCCAAGATTTTAT+GGG | + | chr1.4:47232579-47232598 | MS.gene066126:CDS | 25.0% |
!! | ATTGCACAATTAGAATTTTG+TGG | + | chr1.4:47232730-47232749 | MS.gene066126:CDS | 25.0% |
!!! | CAACAACAGTTTTATAATCT+TGG | - | chr1.4:47232684-47232703 | None:intergenic | 25.0% |
AACAAGAATCATCAAGGTAA+AGG | + | chr1.4:47233135-47233154 | MS.gene066126:CDS | 30.0% | |
AAGACAGGTAATATCATTCT+TGG | - | chr1.4:47233328-47233347 | None:intergenic | 30.0% | |
AATTCATATAACCTCTTCCA+CGG | - | chr1.4:47233089-47233108 | None:intergenic | 30.0% | |
AGACAGGTAATATCATTCTT+GGG | - | chr1.4:47233327-47233346 | None:intergenic | 30.0% | |
AGATACAAAGAATCTGTTGA+TGG | + | chr1.4:47233267-47233286 | MS.gene066126:CDS | 30.0% | |
GCAACAACAATATAGAATGA+GGG | + | chr1.4:47232822-47232841 | MS.gene066126:CDS | 30.0% | |
TGCAACAACAATATAGAATG+AGG | + | chr1.4:47232821-47232840 | MS.gene066126:CDS | 30.0% | |
TGGATCAATGGAACAAATTA+AGG | + | chr1.4:47232656-47232675 | MS.gene066126:CDS | 30.0% | |
TGGCAAAACTATAACTGAAA+AGG | + | chr1.4:47232750-47232769 | MS.gene066126:CDS | 30.0% | |
TTCCATTGATCCATTAATGA+GGG | - | chr1.4:47232649-47232668 | None:intergenic | 30.0% | |
TTTGTAATCCATCATCAATG+TGG | - | chr1.4:47232543-47232562 | None:intergenic | 30.0% | |
! | CAAAAGATCCCAAGATTTTA+TGG | + | chr1.4:47232578-47232597 | MS.gene066126:CDS | 30.0% |
! | TATCTTTTACACAGATACTC+TGG | - | chr1.4:47233252-47233271 | None:intergenic | 30.0% |
! | TTTACCTTGATGATTCTTGT+TGG | - | chr1.4:47233136-47233155 | None:intergenic | 30.0% |
AAAGTTGTGGCGTTTATTTC+AGG | - | chr1.4:47232955-47232974 | None:intergenic | 35.0% | |
AATTGAGTATCTTGCATGTG+AGG | + | chr1.4:47232426-47232445 | MS.gene066126:CDS | 35.0% | |
ATTGAGTATCTTGCATGTGA+GGG | + | chr1.4:47232427-47232446 | MS.gene066126:CDS | 35.0% | |
CAAACCAACAAGAATCATCA+AGG | + | chr1.4:47233129-47233148 | MS.gene066126:CDS | 35.0% | |
GAATGATATTACCTGTCTTG+AGG | + | chr1.4:47233329-47233348 | MS.gene066126:CDS | 35.0% | |
GATGATCGTTGTTATAGATG+CGG | + | chr1.4:47233192-47233211 | MS.gene066126:CDS | 35.0% | |
GTTCCATTGATCCATTAATG+AGG | - | chr1.4:47232650-47232669 | None:intergenic | 35.0% | |
TGTTATAGATGCGGAAAGAA+AGG | + | chr1.4:47233201-47233220 | MS.gene066126:CDS | 35.0% | |
! | AACGCCACAACTTTTAATCA+AGG | + | chr1.4:47232961-47232980 | MS.gene066126:CDS | 35.0% |
! | AATCTGTTGATGGAAAGGAA+AGG | + | chr1.4:47233277-47233296 | MS.gene066126:CDS | 35.0% |
! | ACGATCATCATGATTTCTAG+AGG | - | chr1.4:47233181-47233200 | None:intergenic | 35.0% |
! | ACGCCACAACTTTTAATCAA+GGG | + | chr1.4:47232962-47232981 | MS.gene066126:CDS | 35.0% |
! | ATCTGTTGATGGAAAGGAAA+GGG | + | chr1.4:47233278-47233297 | MS.gene066126:CDS | 35.0% |
! | CAAAGAATCTGTTGATGGAA+AGG | + | chr1.4:47233272-47233291 | MS.gene066126:CDS | 35.0% |
! | CGATCATCATGATTTCTAGA+GGG | - | chr1.4:47233180-47233199 | None:intergenic | 35.0% |
! | CTCAATTAAGTTGTTGTTCC+AGG | - | chr1.4:47232413-47232432 | None:intergenic | 35.0% |
! | CTTGATGATTCTTGTTGGTT+TGG | - | chr1.4:47233131-47233150 | None:intergenic | 35.0% |
! | TTTTCTTTGCCAATTCCTCT+GGG | - | chr1.4:47232492-47232511 | None:intergenic | 35.0% |
! | TTTTTCTTTGCCAATTCCTC+TGG | - | chr1.4:47232493-47232512 | None:intergenic | 35.0% |
!! | AGTCTTATTGCCCTCATTAA+TGG | + | chr1.4:47232636-47232655 | MS.gene066126:CDS | 35.0% |
!! | TTGGTTTGGTCATATTTGAG+AGG | - | chr1.4:47233117-47233136 | None:intergenic | 35.0% |
ACGCCCTTGATTAAAAGTTG+TGG | - | chr1.4:47232968-47232987 | None:intergenic | 40.0% | |
ATCAAGCACCACATTGATGA+TGG | + | chr1.4:47232532-47232551 | MS.gene066126:CDS | 40.0% | |
ATTCTTGAGGGAGACGATTT+GGG | + | chr1.4:47232460-47232479 | MS.gene066126:CDS | 40.0% | |
GCAATATCACTTGAGATGCA+TGG | - | chr1.4:47232804-47232823 | None:intergenic | 40.0% | |
GGATATGTCATTGTTCCTGT+AGG | - | chr1.4:47232934-47232953 | None:intergenic | 40.0% | |
! | ACAACTTTTAATCAAGGGCG+TGG | + | chr1.4:47232967-47232986 | MS.gene066126:CDS | 40.0% |
! | GTCATTGGTCTAAAGCATGT+AGG | + | chr1.4:47233223-47233242 | MS.gene066126:CDS | 40.0% |
! | TGCCCTCATTAATGGATCAA+TGG | + | chr1.4:47232644-47232663 | MS.gene066126:CDS | 40.0% |
!! | AAAGGTAAAAGCATCCAGGA+AGG | + | chr1.4:47233153-47233172 | MS.gene066126:CDS | 40.0% |
!! | AGGTAAAGGTAAAAGCATCC+AGG | + | chr1.4:47233149-47233168 | MS.gene066126:CDS | 40.0% |
!! | CTTGAGGTTGCTGATTTCAT+AGG | + | chr1.4:47233345-47233364 | MS.gene066126:CDS | 40.0% |
CTGGAGACAACTACATAACC+TGG | + | chr1.4:47232392-47232411 | MS.gene066126:CDS | 45.0% | |
GAAATCAGCAACCTCAAGAC+AGG | - | chr1.4:47233343-47233362 | None:intergenic | 45.0% | |
GATGCGGAAAGAAAGGTCAT+TGG | + | chr1.4:47233208-47233227 | MS.gene066126:CDS | 45.0% | |
GATTCTTGAGGGAGACGATT+TGG | + | chr1.4:47232459-47232478 | MS.gene066126:CDS | 45.0% | |
GGACTCGACAAGATTCTTGA+GGG | + | chr1.4:47232448-47232467 | MS.gene066126:CDS | 45.0% | |
GGTGGTTATAATCGCCAAAG+AGG | + | chr1.4:47232988-47233007 | MS.gene066126:CDS | 45.0% | |
TATAATCGCCAAAGAGGACG+TGG | + | chr1.4:47232994-47233013 | MS.gene066126:CDS | 45.0% | |
! | CATGGTCGAAACCATTTTCG+TGG | + | chr1.4:47233057-47233076 | MS.gene066126:CDS | 45.0% |
! | TGTTGATGGAAAGGAAAGGG+AGG | + | chr1.4:47233281-47233300 | MS.gene066126:CDS | 45.0% |
!! | ACTTTTAATCAAGGGCGTGG+TGG | + | chr1.4:47232970-47232989 | MS.gene066126:CDS | 45.0% |
CATAACCACCACGTCCTCTT+TGG | - | chr1.4:47233005-47233024 | None:intergenic | 50.0% | |
GGGACTCGACAAGATTCTTG+AGG | + | chr1.4:47232447-47232466 | MS.gene066126:CDS | 50.0% | |
TTGTTCCTGTAGGACGCAAC+TGG | - | chr1.4:47232924-47232943 | None:intergenic | 50.0% | |
! | CGAAACCATTTTCGTGGTGG+AGG | + | chr1.4:47233063-47233082 | MS.gene066126:CDS | 50.0% |
! | CGTGGTGGTTATGCTCGTTT+TGG | + | chr1.4:47233012-47233031 | MS.gene066126:CDS | 50.0% |
! | GATTTCTAGAGGGACCTTCC+TGG | - | chr1.4:47233170-47233189 | None:intergenic | 50.0% |
! | GGTCGAAACCATTTTCGTGG+TGG | + | chr1.4:47233060-47233079 | MS.gene066126:CDS | 50.0% |
! | GGTGGTTATGCTCGTTTTGG+TGG | + | chr1.4:47233015-47233034 | MS.gene066126:CDS | 50.0% |
!! | TATGCTCGTTTTGGTGGTCG+TGG | + | chr1.4:47233021-47233040 | MS.gene066126:CDS | 50.0% |
AACCACCAGTTGCGTCCTAC+AGG | + | chr1.4:47232916-47232935 | MS.gene066126:CDS | 55.0% | |
AATCGCCAAAGAGGACGTGG+TGG | + | chr1.4:47232997-47233016 | MS.gene066126:CDS | 55.0% | |
GGGAGATGTCCCAGAGGAAT+TGG | + | chr1.4:47232480-47232499 | MS.gene066126:CDS | 55.0% | |
TTCCTGTAGGACGCAACTGG+TGG | - | chr1.4:47232921-47232940 | None:intergenic | 55.0% | |
! | CGATTTGGGAGATGTCCCAG+AGG | + | chr1.4:47232474-47232493 | MS.gene066126:CDS | 55.0% |
CACGGCCTCCACCACGAAAA+TGG | - | chr1.4:47233071-47233090 | None:intergenic | 60.0% | |
CGTGGTCGAGGCAGAAGTCA+TGG | + | chr1.4:47233039-47233058 | MS.gene066126:CDS | 60.0% | |
!! | CATTTTCGTGGTGGAGGCCG+TGG | + | chr1.4:47233069-47233088 | MS.gene066126:CDS | 60.0% |
!! | CGTTTTGGTGGTCGTGGTCG+AGG | + | chr1.4:47233027-47233046 | MS.gene066126:CDS | 60.0% |
! | CGTGGTGGAGGCCGTGGAAG+AGG | + | chr1.4:47233075-47233094 | MS.gene066126:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 47232352 | 47233389 | 47232352 | ID=MS.gene066126 |
chr1.4 | mRNA | 47232352 | 47233389 | 47232352 | ID=MS.gene066126.t1;Parent=MS.gene066126 |
chr1.4 | exon | 47232352 | 47233389 | 47232352 | ID=MS.gene066126.t1.exon1;Parent=MS.gene066126.t1 |
chr1.4 | CDS | 47232352 | 47233389 | 47232352 | ID=cds.MS.gene066126.t1;Parent=MS.gene066126.t1 |
Gene Sequence |
Protein sequence |