AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06651

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06651.t1 MTR_3g092080 97.165 388 11 0 2 389 3 390 0.0 778
MS.gene06651.t1 MTR_3g092080 97.458 354 9 0 2 355 3 356 0.0 714
MS.gene06651.t1 MTR_3g092070 78.125 384 79 3 7 388 5 385 0.0 595
MS.gene06651.t1 MTR_3g092070 82.428 313 55 0 7 319 5 317 0.0 526
MS.gene06651.t1 MTR_8g099065 56.574 251 107 2 65 314 516 765 1.55e-90 291
MS.gene06651.t1 MTR_1g088750 54.264 258 117 1 61 317 867 1124 2.58e-90 295
MS.gene06651.t1 MTR_1g088750 54.264 258 117 1 61 317 916 1173 4.00e-90 295
MS.gene06651.t1 MTR_1g088730 52.030 271 127 2 61 328 910 1180 1.22e-89 294
MS.gene06651.t1 MTR_3g089100 54.065 246 112 1 61 305 875 1120 1.45e-85 282
MS.gene06651.t1 MTR_3g089100 54.065 246 112 1 61 305 880 1125 1.48e-85 282
MS.gene06651.t1 MTR_3g089100 54.065 246 112 1 61 305 909 1154 1.85e-85 282
MS.gene06651.t1 MTR_5g009840 52.964 253 117 2 62 313 495 746 2.29e-84 274
MS.gene06651.t1 MTR_6g033740 48.485 297 126 5 62 333 479 773 4.18e-82 267
MS.gene06651.t1 MTR_1g099480 52.227 247 116 2 65 310 450 695 5.74e-77 253
MS.gene06651.t1 MTR_1g099470 51.626 246 118 1 65 310 416 660 3.08e-76 251
MS.gene06651.t1 MTR_1g101870 51.626 246 117 2 65 309 487 731 1.28e-72 242
MS.gene06651.t1 MTR_1g101870 51.626 246 117 2 65 309 539 783 2.09e-72 242
MS.gene06651.t1 MTR_4g074920 43.554 287 143 3 65 350 651 919 3.99e-70 237
MS.gene06651.t1 MTR_8g099065 61.202 183 69 2 65 246 516 697 6.68e-68 228
MS.gene06651.t1 MTR_7g075520 45.643 241 124 3 74 309 199 437 8.43e-62 206
MS.gene06651.t1 MTR_1g099480 55.738 183 80 1 65 246 450 632 5.62e-59 202
MS.gene06651.t1 MTR_4g096870 42.379 269 142 7 82 341 118 382 1.64e-57 193
MS.gene06651.t1 MTR_6g023855 39.560 273 156 5 82 348 245 514 1.00e-56 194
MS.gene06651.t1 MTR_6g023875 38.516 283 165 6 71 348 371 649 3.80e-56 195
MS.gene06651.t1 MTR_2g086160 41.202 233 130 5 82 311 131 359 1.36e-50 176
MS.gene06651.t1 MTR_4g011810 38.868 265 147 6 83 334 242 504 1.68e-50 177
MS.gene06651.t1 MTR_2g086160 42.593 216 117 5 82 294 131 342 2.00e-49 170
MS.gene06651.t1 MTR_4g053350 40.773 233 131 5 82 311 126 354 8.64e-49 171
MS.gene06651.t1 MTR_4g053350 40.773 233 131 5 82 311 126 354 1.00e-48 171
MS.gene06651.t1 MTR_7g101870 35.816 282 168 7 82 356 478 753 1.20e-47 173
MS.gene06651.t1 MTR_7g101870 38.034 234 136 4 82 311 205 433 4.86e-45 166
MS.gene06651.t1 MTR_6g023865 32.895 304 181 6 64 348 140 439 4.65e-47 167
MS.gene06651.t1 MTR_2g095210 35.461 282 170 7 82 356 405 681 4.06e-46 168
MS.gene06651.t1 MTR_2g095210 41.860 86 49 1 82 167 206 290 2.65e-12 68.9
MS.gene06651.t1 MTR_1g063380 34.397 282 173 6 82 356 477 753 4.50e-46 169
MS.gene06651.t1 MTR_1g063380 38.655 238 136 5 79 311 200 432 1.58e-45 167
MS.gene06651.t1 MTR_3g117230 37.705 244 144 4 69 307 125 365 1.46e-45 161
MS.gene06651.t1 MTR_3g112260 37.295 244 145 4 69 307 122 362 7.51e-45 159
MS.gene06651.t1 MTR_6g023845 33.210 271 148 5 82 348 115 356 4.20e-42 151
MS.gene06651.t1 MTR_2g095320 34.815 270 158 6 82 342 152 412 5.37e-41 154
MS.gene06651.t1 MTR_2g095320 35.857 251 142 6 82 327 420 656 3.72e-40 151
MS.gene06651.t1 MTR_7g089290 35.036 274 150 8 38 304 611 863 3.82e-40 152
MS.gene06651.t1 MTR_7g089290 35.036 274 150 8 38 304 639 891 4.30e-40 152
MS.gene06651.t1 MTR_3g062510 35.249 261 152 6 82 330 158 413 1.18e-39 146
MS.gene06651.t1 MTR_1g083330 36.957 230 135 5 84 307 168 393 6.83e-39 144
MS.gene06651.t1 MTR_4g033235 36.957 230 135 5 84 307 169 394 7.86e-39 144
MS.gene06651.t1 MTR_4g094270 37.179 234 136 5 82 308 155 384 2.66e-38 142
MS.gene06651.t1 MTR_1g095660 36.820 239 133 7 82 307 117 350 1.11e-37 140
MS.gene06651.t1 MTR_7g089040 34.894 235 142 5 83 311 685 914 3.61e-37 143
MS.gene06651.t1 MTR_7g089040 32.870 216 129 6 122 325 422 633 1.97e-27 115
MS.gene06651.t1 MTR_2g007010 36.214 243 144 6 85 321 240 477 1.40e-36 141
MS.gene06651.t1 MTR_2g007010 30.043 233 156 4 82 310 527 756 6.16e-32 128
MS.gene06651.t1 MTR_4g094662 38.197 233 129 6 83 307 229 454 8.82e-36 139
MS.gene06651.t1 MTR_7g010800 39.056 233 127 6 83 307 206 431 2.13e-35 137
MS.gene06651.t1 MTR_3g062510 43.011 186 94 5 82 260 158 338 2.19e-35 134
MS.gene06651.t1 MTR_7g088830 34.043 235 144 5 83 311 658 887 3.12e-35 138
MS.gene06651.t1 MTR_7g088830 29.388 245 160 7 81 321 391 626 9.80e-25 107
MS.gene06651.t1 MTR_1g069105 36.522 230 136 5 85 308 190 415 6.17e-35 134
MS.gene06651.t1 MTR_7g096060 37.238 239 126 8 83 307 240 468 1.18e-34 135
MS.gene06651.t1 MTR_2g438140 37.339 233 131 6 83 307 226 451 1.31e-34 135
MS.gene06651.t1 MTR_7g099640 36.087 230 137 5 85 308 189 414 2.39e-34 132
MS.gene06651.t1 MTR_6g016600 37.179 234 139 4 78 307 312 541 2.47e-34 134
MS.gene06651.t1 MTR_4g067100 35.341 249 144 7 72 308 367 610 2.65e-34 135
MS.gene06651.t1 MTR_4g067100 35.341 249 144 7 72 308 367 610 2.75e-34 135
MS.gene06651.t1 MTR_7g099640 36.087 230 137 5 85 308 189 414 2.84e-34 132
MS.gene06651.t1 MTR_2g438140 37.339 233 131 6 83 307 286 511 3.79e-34 134
MS.gene06651.t1 MTR_3g115110 37.344 241 136 5 83 315 249 482 1.56e-33 132
MS.gene06651.t1 MTR_4g064350 36.250 240 127 8 83 307 320 548 2.50e-33 132
MS.gene06651.t1 MTR_2g024440 32.234 273 166 7 82 344 213 476 3.87e-33 129
MS.gene06651.t1 MTR_2g024440 32.234 273 166 7 82 344 296 559 6.85e-33 130
MS.gene06651.t1 MTR_2g024440 32.234 273 166 7 82 344 295 558 7.79e-33 129
MS.gene06651.t1 MTR_3g096000 39.095 243 127 9 83 311 296 531 5.10e-32 128
MS.gene06651.t1 MTR_7g078570 37.500 240 124 9 83 307 192 420 8.59e-32 127
MS.gene06651.t1 MTR_5g075340 35.531 273 149 8 82 345 228 482 1.84e-31 126
MS.gene06651.t1 MTR_1g069105 41.489 188 100 5 85 266 190 373 2.05e-31 123
MS.gene06651.t1 MTR_6g059690 35.833 240 128 8 83 307 197 425 2.96e-31 125
MS.gene06651.t1 MTR_3g104480 33.439 314 160 10 46 345 197 475 3.93e-31 125
MS.gene06651.t1 MTR_7g088980 36.726 226 127 8 86 301 20 239 7.24e-31 123
MS.gene06651.t1 MTR_3g104470 34.559 272 151 8 83 345 224 477 8.01e-31 124
MS.gene06651.t1 MTR_7g088980 36.726 226 127 8 86 301 20 239 1.37e-30 123
MS.gene06651.t1 MTR_7g088980 35.169 236 141 5 83 311 286 516 1.44e-29 120
MS.gene06651.t1 MTR_7g088980 35.169 236 141 5 83 311 136 366 5.16e-30 119
MS.gene06651.t1 MTR_7g088980 40.000 85 48 2 219 301 6 89 7.19e-11 63.9
MS.gene06651.t1 MTR_2g101290 31.405 242 139 7 81 308 413 641 5.99e-30 122
MS.gene06651.t1 MTR_2g101290 31.405 242 139 7 81 308 413 641 6.08e-30 122
MS.gene06651.t1 MTR_1g028390 38.288 222 126 6 85 302 331 545 7.40e-30 122
MS.gene06651.t1 MTR_2g078630 30.682 264 161 8 85 331 68 326 9.50e-30 122
MS.gene06651.t1 MTR_7g088850 33.473 239 151 4 83 316 282 517 1.21e-29 120
MS.gene06651.t1 MTR_7g088850 35.233 193 116 5 122 307 51 241 1.57e-24 105
MS.gene06651.t1 MTR_7g088980 35.169 236 141 5 83 311 218 448 1.33e-29 119
MS.gene06651.t1 MTR_7g088980 37.600 125 73 4 180 301 49 171 8.39e-16 79.3
MS.gene06651.t1 MTR_5g069780 36.820 239 129 8 83 308 313 542 2.08e-29 120
MS.gene06651.t1 MTR_2g078630 30.682 264 161 8 85 331 596 854 2.50e-29 120
MS.gene06651.t1 MTR_7g088980 35.169 236 141 5 83 311 312 542 3.14e-29 119
MS.gene06651.t1 MTR_7g088980 34.389 221 132 6 122 335 81 295 1.01e-28 118
MS.gene06651.t1 MTR_3g462930 36.667 240 128 7 83 308 304 533 5.64e-29 119
MS.gene06651.t1 MTR_7g088980 34.389 221 132 6 122 335 81 295 6.29e-29 118
MS.gene06651.t1 MTR_0376s0020 33.898 236 137 7 83 307 1 228 1.11e-28 117
MS.gene06651.t1 MTR_3g023900 29.719 249 152 5 82 310 530 775 1.41e-28 118
MS.gene06651.t1 MTR_3g023900 33.019 212 131 4 115 315 264 475 1.12e-27 115
MS.gene06651.t1 MTR_8g023550 33.047 233 129 7 82 307 164 376 1.36e-27 113
MS.gene06651.t1 MTR_8g099605 28.750 320 185 9 83 387 404 695 2.40e-27 114
MS.gene06651.t1 MTR_8g099605 28.750 320 185 9 83 387 163 454 3.77e-27 114
MS.gene06651.t1 MTR_3g023890 31.818 242 140 5 82 301 384 622 9.15e-27 112
MS.gene06651.t1 MTR_3g023890 31.416 226 137 6 102 312 105 327 4.37e-23 101
MS.gene06651.t1 MTR_5g075360 35.065 231 129 5 122 345 53 269 2.48e-26 110
MS.gene06651.t1 MTR_5g075360 35.065 231 129 5 122 345 229 445 4.36e-26 110
MS.gene06651.t1 MTR_5g075360 35.065 231 129 5 122 345 103 319 4.56e-26 110
MS.gene06651.t1 MTR_5g075360 35.065 231 129 5 122 345 279 495 5.41e-26 110
MS.gene06651.t1 MTR_8g469460 33.898 236 115 9 82 314 206 403 4.91e-23 101
MS.gene06651.t1 MTR_3g104490 34.081 223 117 8 82 301 206 401 1.21e-22 100
MS.gene06651.t1 MTR_8g056860 31.980 197 119 6 122 307 507 699 5.08e-22 98.6
MS.gene06651.t1 MTR_5g074850 35.326 184 114 3 122 302 542 723 5.49e-22 98.6
MS.gene06651.t1 MTR_4g088885 29.661 236 136 9 122 334 261 489 2.35e-17 84.3
MS.gene06651.t1 MTR_5g020530 36.806 144 84 5 119 260 386 524 9.13e-17 82.4
MS.gene06651.t1 MTR_4g083460 26.688 311 158 9 85 367 839 1107 2.84e-16 81.3
MS.gene06651.t1 MTR_1g080430 30.890 191 116 7 83 264 677 860 3.02e-16 81.3
MS.gene06651.t1 MTR_1g080430 30.890 191 116 7 83 264 677 860 3.15e-16 81.3
MS.gene06651.t1 MTR_6g005760 35.099 151 91 5 120 268 234 379 9.31e-16 79.0
MS.gene06651.t1 MTR_6g005760 34.868 152 92 5 119 268 361 507 1.22e-15 79.0
MS.gene06651.t1 MTR_1g044600 33.951 162 95 5 155 307 198 356 1.38e-15 78.6
MS.gene06651.t1 MTR_4g077880 32.903 155 91 5 119 268 367 513 5.12e-15 77.0
MS.gene06651.t1 MTR_4g112600 52.174 69 28 2 86 152 3 68 8.98e-14 66.6
MS.gene06651.t1 MTR_3g076930 29.310 174 97 5 117 269 192 360 2.50e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06651.t1 AT4G27680 75.521 384 93 1 7 389 5 388 0.0 599
MS.gene06651.t1 AT5G53540 71.979 389 107 2 3 389 4 392 0.0 568
MS.gene06651.t1 AT4G24860 53.309 272 121 2 61 326 768 1039 4.25e-90 293
MS.gene06651.t1 AT4G24860 53.309 272 121 2 61 326 795 1066 4.76e-90 294
MS.gene06651.t1 AT4G24860 53.309 272 121 2 61 326 793 1064 6.65e-90 293
MS.gene06651.t1 AT4G24860 53.309 272 121 2 61 326 791 1062 7.51e-90 293
MS.gene06651.t1 AT1G64110 53.992 263 115 3 65 322 495 756 1.76e-89 287
MS.gene06651.t1 AT1G64110 53.992 263 115 3 65 322 500 761 1.83e-89 287
MS.gene06651.t1 AT1G64110 53.992 263 115 3 65 322 500 761 1.83e-89 287
MS.gene06651.t1 AT1G64110 53.992 263 115 3 65 322 498 759 1.95e-89 287
MS.gene06651.t1 AT1G64110 53.992 263 115 3 65 322 498 759 1.95e-89 287
MS.gene06651.t1 AT1G02890 45.808 334 151 4 15 333 888 1206 3.63e-89 293
MS.gene06651.t1 AT4G02480 54.980 251 112 1 61 310 938 1188 1.17e-88 291
MS.gene06651.t1 AT1G50140 47.931 290 150 1 62 350 668 957 1.31e-87 285
MS.gene06651.t1 AT1G50140 47.931 290 150 1 62 350 668 957 1.31e-87 285
MS.gene06651.t1 AT1G50140 47.931 290 150 1 62 350 690 979 1.53e-87 285
MS.gene06651.t1 AT1G50140 47.931 290 150 1 62 350 690 979 1.53e-87 285
MS.gene06651.t1 AT1G50140 47.931 290 150 1 62 350 690 979 1.53e-87 285
MS.gene06651.t1 AT3G19740 50.549 273 131 2 62 330 680 952 8.46e-85 278
MS.gene06651.t1 AT5G52882 51.894 264 124 3 61 323 492 753 5.09e-84 273
MS.gene06651.t1 AT4G28000 48.951 286 141 4 65 349 499 780 5.27e-83 270
MS.gene06651.t1 AT4G28000 48.951 286 141 4 65 349 497 778 7.71e-83 270
MS.gene06651.t1 AT4G28000 48.951 286 141 4 65 349 499 780 7.97e-83 270
MS.gene06651.t1 AT1G02890 41.018 334 139 5 15 333 888 1178 3.56e-70 239
MS.gene06651.t1 AT1G62130 46.269 268 125 4 47 314 715 963 1.51e-69 236
MS.gene06651.t1 AT1G62130 41.071 336 153 7 47 356 722 1038 1.68e-69 236
MS.gene06651.t1 AT2G45500 44.622 251 129 5 65 309 59 305 3.74e-65 211
MS.gene06651.t1 AT2G45500 44.622 251 129 5 65 309 59 305 3.74e-65 211
MS.gene06651.t1 AT2G45500 44.622 251 129 5 65 309 192 438 1.10e-63 211
MS.gene06651.t1 AT2G45500 44.622 251 129 5 65 309 196 442 1.12e-63 211
MS.gene06651.t1 AT2G45500 44.622 251 129 5 65 309 202 448 2.47e-63 211
MS.gene06651.t1 AT2G34560 40.426 282 150 7 69 341 92 364 1.13e-58 196
MS.gene06651.t1 AT2G34560 40.426 282 150 7 69 341 101 373 1.56e-58 195
MS.gene06651.t1 AT3G27120 39.161 286 159 7 71 348 389 667 1.73e-55 194
MS.gene06651.t1 AT1G80350 38.521 257 145 5 83 332 236 486 1.15e-50 178
MS.gene06651.t1 AT2G27600 40.343 233 132 5 82 311 128 356 3.62e-48 169
MS.gene06651.t1 AT5G03340 35.461 282 170 6 82 356 476 752 1.72e-47 173
MS.gene06651.t1 AT5G03340 38.034 234 136 4 82 311 203 431 7.18e-45 166
MS.gene06651.t1 AT1G45000 38.115 244 143 4 69 307 122 362 3.56e-46 163
MS.gene06651.t1 AT3G09840 38.462 234 135 4 82 311 203 431 1.68e-45 167
MS.gene06651.t1 AT3G09840 34.276 283 172 6 82 356 476 752 1.85e-45 167
MS.gene06651.t1 AT3G53230 36.694 248 147 5 82 322 477 721 2.67e-45 167
MS.gene06651.t1 AT3G53230 35.556 270 160 5 82 342 204 468 8.23e-45 165
MS.gene06651.t1 AT5G43010 37.295 244 145 4 69 307 122 362 4.35e-45 160
MS.gene06651.t1 AT1G53750 38.197 233 132 6 82 307 164 391 3.34e-41 150
MS.gene06651.t1 AT5G58290 35.249 261 152 6 82 330 151 406 6.85e-40 146
MS.gene06651.t1 AT1G03000 36.207 232 139 6 78 303 650 878 3.36e-39 149
MS.gene06651.t1 AT3G05530 36.797 231 134 5 84 307 169 394 4.41e-39 145
MS.gene06651.t1 AT5G19990 37.179 234 136 5 82 308 157 386 1.61e-38 143
MS.gene06651.t1 AT5G19990 37.179 234 136 5 82 308 157 386 1.61e-38 143
MS.gene06651.t1 AT5G19990 37.179 234 136 5 82 308 99 328 1.80e-38 142
MS.gene06651.t1 AT5G20000 37.179 234 136 5 82 308 157 386 2.10e-38 143
MS.gene06651.t1 AT1G53780 37.339 233 132 6 82 306 357 583 5.10e-38 145
MS.gene06651.t1 AT1G53780 37.339 233 132 6 82 306 335 561 5.61e-38 144
MS.gene06651.t1 AT1G53780 37.339 233 132 6 82 306 336 562 5.77e-38 144
MS.gene06651.t1 AT1G53780 37.339 233 132 6 82 306 336 562 5.77e-38 144
MS.gene06651.t1 AT1G09100 36.797 231 134 5 84 307 168 393 7.15e-38 141
MS.gene06651.t1 AT3G56690 35.294 238 143 5 83 314 721 953 1.52e-37 144
MS.gene06651.t1 AT3G56690 32.364 275 170 6 41 311 347 609 4.90e-37 143
MS.gene06651.t1 AT2G30950 38.197 233 129 6 83 307 224 449 1.94e-35 138
MS.gene06651.t1 AT2G30950 38.197 233 129 6 83 307 224 449 1.94e-35 138
MS.gene06651.t1 AT2G30950 38.197 233 129 6 83 307 224 449 1.94e-35 138
MS.gene06651.t1 AT2G30950 38.197 233 129 6 83 307 228 453 2.15e-35 138
MS.gene06651.t1 AT1G06430 38.627 233 128 6 83 307 217 442 2.35e-35 137
MS.gene06651.t1 AT1G06430 38.627 233 128 6 83 307 217 442 2.35e-35 137
MS.gene06651.t1 AT1G06430 38.627 233 128 6 83 307 217 442 2.35e-35 137
MS.gene06651.t1 AT5G15250 38.136 236 125 8 83 307 221 446 4.79e-35 137
MS.gene06651.t1 AT1G05910 35.341 249 144 7 72 308 365 608 6.01e-35 137
MS.gene06651.t1 AT4G29040 36.797 231 134 6 85 308 187 412 1.63e-34 132
MS.gene06651.t1 AT2G03670 37.104 221 130 5 88 301 24 242 1.65e-34 132
MS.gene06651.t1 AT2G03670 38.596 114 69 1 83 196 283 395 5.14e-14 73.6
MS.gene06651.t1 AT3G01610 35.124 242 142 5 85 314 232 470 1.71e-34 135
MS.gene06651.t1 AT3G01610 33.476 233 146 5 82 310 524 751 6.43e-31 125
MS.gene06651.t1 AT2G20140 36.797 231 134 6 85 308 187 412 2.03e-34 132
MS.gene06651.t1 AT3G01610 35.124 242 142 5 85 314 232 470 2.06e-34 135
MS.gene06651.t1 AT3G01610 33.476 233 146 5 82 310 524 751 7.34e-31 125
MS.gene06651.t1 AT3G02450 35.766 274 143 10 83 335 331 592 3.56e-34 134
MS.gene06651.t1 AT5G42270 36.929 241 137 5 83 315 247 480 8.58e-34 133
MS.gene06651.t1 AT2G03670 37.104 221 130 5 88 301 24 242 9.78e-34 132
MS.gene06651.t1 AT2G03670 34.483 232 143 5 83 308 283 511 2.49e-29 120
MS.gene06651.t1 AT1G50250 36.929 241 137 5 83 315 259 492 1.39e-33 132
MS.gene06651.t1 AT5G08470 34.583 240 152 3 85 322 843 1079 4.07e-32 129
MS.gene06651.t1 AT5G08470 34.583 240 152 3 85 322 834 1070 4.14e-32 129
MS.gene06651.t1 AT1G07510 35.685 241 129 8 83 308 324 553 7.13e-32 128
MS.gene06651.t1 AT2G29080 35.983 239 130 7 83 308 319 547 9.15e-32 127
MS.gene06651.t1 AT2G26140 37.500 224 130 5 83 302 224 441 5.29e-31 125
MS.gene06651.t1 AT5G53170 37.662 231 133 6 76 302 352 575 7.59e-31 125
MS.gene06651.t1 AT5G15250 34.601 263 128 9 83 311 221 473 8.98e-31 123
MS.gene06651.t1 AT3G47060 36.402 239 130 8 83 308 322 551 1.25e-30 124
MS.gene06651.t1 AT5G64580 37.037 243 132 9 83 311 313 548 3.43e-30 123
MS.gene06651.t1 AT5G58870 36.402 239 130 8 83 308 326 555 8.41e-30 122
MS.gene06651.t1 AT4G04180 31.349 252 152 6 82 321 310 552 1.71e-29 120
MS.gene06651.t1 AT4G04180 31.349 252 152 6 82 321 315 557 2.07e-29 120
MS.gene06651.t1 AT3G16290 30.605 281 161 9 81 342 405 670 1.12e-28 118
MS.gene06651.t1 AT4G23940 33.471 242 138 6 83 308 427 661 3.45e-28 117
MS.gene06651.t1 AT3G15120 29.502 261 167 6 85 331 728 985 3.67e-28 117
MS.gene06651.t1 AT3G15120 29.502 261 167 6 85 331 718 975 3.74e-28 117
MS.gene06651.t1 AT1G79560 35.354 198 113 6 122 308 527 720 3.10e-26 111
MS.gene06651.t1 AT1G79560 35.354 198 113 6 122 308 527 720 3.22e-26 111
MS.gene06651.t1 AT1G79560 35.354 198 113 6 122 308 527 720 3.54e-26 111
MS.gene06651.t1 AT1G45000 37.908 153 91 2 69 218 122 273 9.27e-25 103
MS.gene06651.t1 AT5G08470 35.000 160 100 3 85 244 843 998 2.21e-17 84.7
MS.gene06651.t1 AT4G04910 30.275 218 121 10 122 315 251 461 2.71e-16 81.3
MS.gene06651.t1 AT3G04340 31.156 199 118 8 75 264 776 964 4.68e-16 80.9
MS.gene06651.t1 AT2G18330 34.722 144 87 5 119 260 383 521 1.54e-15 79.0
MS.gene06651.t1 AT3G03060 32.895 152 95 5 120 269 385 531 8.33e-15 76.6
MS.gene06651.t1 AT5G16930 32.895 152 95 5 120 269 397 543 8.62e-15 76.6
MS.gene06651.t1 AT4G36580 34.028 144 88 5 119 260 380 518 2.35e-14 75.1

Find 80 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTGTTCAAGAGCTTTCT+TGG 0.143860 3.3:+76879726 None:intergenic
ATATCTCAACCCTCTCTTTC+TGG 0.149964 3.3:+76877824 None:intergenic
ACAAACTTCGATTCTGATTC+TGG 0.222136 3.3:+76879841 None:intergenic
CAATGAATTCTCTAAGCTTA+TGG 0.225338 3.3:-76876834 MS.gene06651:CDS
GATATTGAAGGTTATCTTAA+AGG 0.238298 3.3:-76877806 MS.gene06651:CDS
TGGTGAGTCAGTTGATTATC+AGG 0.256999 3.3:-76876870 MS.gene06651:CDS
GTTTGCCCATGGAAAACTAT+TGG 0.289612 3.3:-76879521 MS.gene06651:CDS
AAACTGAGTTCATGGCTCTA+TGG 0.320401 3.3:-76878086 MS.gene06651:CDS
CTTATAAGCCAAGCTAAATA+TGG 0.332003 3.3:+76878197 None:intergenic
TTCTTGGATGATTGACGGTT+CGG 0.333752 3.3:+76879742 None:intergenic
TCATCCAGCAGTTCTCTAAT+AGG 0.339066 3.3:+76877679 None:intergenic
GAGCGGCTTTCATTAATGTT+AGG 0.358887 3.3:-76879417 MS.gene06651:CDS
TTTGCCCATGGAAAACTATT+GGG 0.366364 3.3:-76879520 MS.gene06651:CDS
AAATATGAAAACTGAGTTCA+TGG 0.370471 3.3:-76878094 MS.gene06651:CDS
ATTCAAATGCTTAAGAATCC+TGG 0.378637 3.3:+76876780 None:intergenic
TCTTGGATGATTGACGGTTC+GGG 0.382531 3.3:+76879743 None:intergenic
TCAACCCTCTCTTTCTGGTC+TGG 0.390685 3.3:+76877829 None:intergenic
ATATTGAAGGTTATCTTAAA+GGG 0.410430 3.3:-76877805 MS.gene06651:CDS
AAAACTATTGGGTCCTCAAA+AGG 0.416833 3.3:-76879509 MS.gene06651:CDS
CAAAAGGGTGTCTTGTTGTA+TGG 0.420182 3.3:-76879493 MS.gene06651:CDS
CAGCTATTACATCTTCGTAT+TGG 0.422427 3.3:+76879659 None:intergenic
AAGAATCCTGGGAATCTTGT+TGG 0.427563 3.3:+76876792 None:intergenic
ATAGACTTCAATTATATAGC+TGG 0.444468 3.3:-76877763 MS.gene06651:CDS
TTTCCTCAAGCCTTTGAAGT+TGG 0.462777 3.3:-76877856 MS.gene06651:CDS
CGGGTCAAGATATGAATAAC+CGG 0.463608 3.3:+76879762 None:intergenic
AGTGTCTGCCATATTTAGCT+TGG 0.464625 3.3:-76878205 MS.gene06651:CDS
AACTCAACATCGATGTGGTC+AGG 0.468203 3.3:+76879622 None:intergenic
GAGCTTTCTTGGATGATTGA+CGG 0.474974 3.3:+76879737 None:intergenic
AGAATGCCCTTTCAACTTCA+CGG 0.476463 3.3:-76876946 MS.gene06651:CDS
AGCAATAGCTTTAGCAAGCA+TGG 0.476844 3.3:+76879450 None:intergenic
TCTATTTGATCTTTGCAAGA+AGG 0.478539 3.3:-76877713 MS.gene06651:CDS
TTGTATGGACCACCTGGTAC+TGG 0.480480 3.3:-76879478 MS.gene06651:CDS
GAACCACATACTCATGAGAT+TGG 0.480539 3.3:+76879390 None:intergenic
AGAGAGGGTTGAGATATTGA+AGG 0.482658 3.3:-76877818 MS.gene06651:CDS
TCAAACTGCGACAAAGGTCT+AGG 0.485635 3.3:+76876974 None:intergenic
TGCTGGATGACGAGAAGAAA+GGG 0.487745 3.3:-76877666 MS.gene06651:CDS
TGTAGAGAATGCTCGAGTTA+TGG 0.489871 3.3:-76877932 MS.gene06651:intron
CCGTCGTCCGTGAAGTTGAA+AGG 0.494426 3.3:+76876939 None:intergenic
TTCAAATGCTTAAGAATCCT+GGG 0.495703 3.3:+76876781 None:intergenic
GTTCGACAGTATCGGAGGAT+TGG 0.500224 3.3:-76879602 MS.gene06651:CDS
TCTAAATCAAACTGCGACAA+AGG 0.511155 3.3:+76876968 None:intergenic
ACGGCTGTTGCAAGCGAGTA+CGG 0.511325 3.3:-76876920 MS.gene06651:CDS
CGATCAGAATTGTTTGCCCA+TGG 0.514301 3.3:-76879532 MS.gene06651:CDS
AACTGAGTTCATGGCTCTAT+GGG 0.515199 3.3:-76878085 MS.gene06651:CDS
AAACTATTGGGTCCTCAAAA+GGG 0.519588 3.3:-76879508 MS.gene06651:CDS
TATATAGCTGGTTTATGCAA+GGG 0.522653 3.3:-76877751 MS.gene06651:CDS
AACTTGATGAAGCGATACTT+CGG 0.527863 3.3:-76877882 MS.gene06651:CDS
GATGTTGAGTTCGACAGTAT+CGG 0.529620 3.3:-76879610 MS.gene06651:CDS
GTCTGGAATTCCAACTTCAA+AGG 0.530935 3.3:+76877846 None:intergenic
GAGTTCATGGCTCTATGGGA+TGG 0.533268 3.3:-76878081 MS.gene06651:CDS
AGTTCATGGCTCTATGGGAT+GGG 0.534957 3.3:-76878080 MS.gene06651:CDS
TAACCTCCAACAAGATTCCC+AGG 0.537269 3.3:-76876798 MS.gene06651:CDS
ATCGCTTCATCAAGTTCTGA+AGG 0.542957 3.3:+76877889 None:intergenic
GTCTTGTTGTATGGACCACC+TGG 0.542959 3.3:-76879484 MS.gene06651:CDS
CGTCGTCCGTGAAGTTGAAA+GGG 0.543038 3.3:+76876940 None:intergenic
TTCGGCGATGCAACTAAGCT+TGG 0.543662 3.3:-76879370 MS.gene06651:intron
TTATATAGCTGGTTTATGCA+AGG 0.548540 3.3:-76877752 MS.gene06651:CDS
CAATACGAAGATGTAATAGC+TGG 0.551680 3.3:-76879658 MS.gene06651:CDS
CTGCTGGATGACGAGAAGAA+AGG 0.553382 3.3:-76877667 MS.gene06651:CDS
AAAGCAATTGCAAATCGTCT+TGG 0.556831 3.3:-76879703 MS.gene06651:CDS
TCATCAATGAATATGATAGC+AGG 0.558085 3.3:+76878168 None:intergenic
AATCCTGGGAATCTTGTTGG+AGG 0.558745 3.3:+76876795 None:intergenic
GGTTTATGCAAGGGTTACAC+AGG 0.570100 3.3:-76877742 MS.gene06651:CDS
AATCTCATGAGTATGTGGTT+CGG 0.571376 3.3:-76879388 MS.gene06651:CDS
TGTCCAATCTCATGAGTATG+TGG 0.573878 3.3:-76879393 MS.gene06651:CDS
ATTCCAACTTCAAAGGCTTG+AGG 0.586616 3.3:+76877853 None:intergenic
GGTTATCTTAAAGGGCGAGA+GGG 0.590443 3.3:-76877797 MS.gene06651:CDS
GGTGAGTCAGTTGATTATCA+GGG 0.595184 3.3:-76876869 MS.gene06651:CDS
AAAGCTATTGCTAAGGAGTG+TGG 0.598472 3.3:-76879439 MS.gene06651:CDS
GCTTGCTAAAGCTATTGCTA+AGG 0.615516 3.3:-76879446 MS.gene06651:CDS
GAATTCCAGACCAGAAAGAG+AGG 0.625831 3.3:-76877834 MS.gene06651:CDS
AGGTTATCTTAAAGGGCGAG+AGG 0.640020 3.3:-76877798 MS.gene06651:CDS
GTTGAGTTCGACAGTATCGG+AGG 0.646819 3.3:-76879607 MS.gene06651:CDS
TATTGCTAAGGAGTGTGGAG+CGG 0.650592 3.3:-76879434 MS.gene06651:CDS
AGTTGCTTAATATTGTACAC+CGG 0.650727 3.3:-76879781 MS.gene06651:CDS
CCTTTCAACTTCACGGACGA+CGG 0.653878 3.3:-76876939 MS.gene06651:CDS
TCGCTTCATCAAGTTCTGAA+GGG 0.657533 3.3:+76877890 None:intergenic
AATTCCAGACCAGAAAGAGA+GGG 0.661161 3.3:-76877833 MS.gene06651:CDS
ACGTCGTTCATCAGAACACG+AGG 0.705850 3.3:-76878124 MS.gene06651:CDS
TGTCGAACTCAACATCGATG+TGG 0.715742 3.3:+76879617 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAAAAATAAAATAACA+CGG + chr3.3:76879642-76879661 None:intergenic 10.0%
!!! ACTTTAAATATTTTTTCTTT+TGG - chr3.3:76878682-76878701 MS.gene06651:intron 10.0%
!!! TTATTTTATTTTTATGTTTC+AGG - chr3.3:76879644-76879663 MS.gene06651:CDS 10.0%
!! AAAAACATAATATTAACGAT+AGG + chr3.3:76878411-76878430 None:intergenic 15.0%
!! AGATTAGATACAATTATATT+AGG + chr3.3:76878348-76878367 None:intergenic 15.0%
!! GATTAGATACAATTATATTA+GGG + chr3.3:76878347-76878366 None:intergenic 15.0%
!! TAAAAAAAAACTGGTAAAAT+TGG - chr3.3:76879358-76879377 MS.gene06651:intron 15.0%
!! AAAAATGATAATATCCACTA+TGG + chr3.3:76879326-76879345 None:intergenic 20.0%
!! AAATCTTGCAAATTGATTAA+AGG - chr3.3:76877395-76877414 MS.gene06651:intron 20.0%
!! AGTTATATTACATTTACAAG+AGG + chr3.3:76877677-76877696 None:intergenic 20.0%
!! ATATTGAAGGTTATCTTAAA+GGG - chr3.3:76878838-76878857 MS.gene06651:intron 20.0%
!! TTCATTAGAATATTTAACGA+GGG - chr3.3:76878285-76878304 MS.gene06651:intron 20.0%
!!! AACTGATTTGATTTTATTAG+CGG - chr3.3:76876825-76876844 MS.gene06651:CDS 20.0%
!!! ATTTCACTTTTAAACAATTC+GGG + chr3.3:76879427-76879446 None:intergenic 20.0%
!!! GATTTCACTTTTAAACAATT+CGG + chr3.3:76879428-76879447 None:intergenic 20.0%
!!! GCATAAATTTTCAAAATATG+AGG - chr3.3:76878638-76878657 MS.gene06651:intron 20.0%
!!! TAATCAATTTGCAAGATTTT+GGG + chr3.3:76877394-76877413 None:intergenic 20.0%
!!! TATTTTGAAAATTTATGCCA+TGG + chr3.3:76878636-76878655 None:intergenic 20.0%
!!! TTAATCAATTTGCAAGATTT+TGG + chr3.3:76877395-76877414 None:intergenic 20.0%
! AAATATGAAAACTGAGTTCA+TGG - chr3.3:76878549-76878568 MS.gene06651:intron 25.0%
! AATAATTAGAGAACCAACAA+GGG + chr3.3:76878195-76878214 None:intergenic 25.0%
! ATAGACTTCAATTATATAGC+TGG - chr3.3:76878880-76878899 MS.gene06651:intron 25.0%
! ATAGCAGAAAAGGTTAATAT+TGG + chr3.3:76877497-76877516 None:intergenic 25.0%
! CTTCATTAGAATATTTAACG+AGG - chr3.3:76878284-76878303 MS.gene06651:intron 25.0%
! GATATTGAAGGTTATCTTAA+AGG - chr3.3:76878837-76878856 MS.gene06651:intron 25.0%
! TTCATTCTGTTTGATAGATA+AGG - chr3.3:76877877-76877896 MS.gene06651:CDS 25.0%
!! AAACTTGTTTCCCAATATAA+AGG + chr3.3:76877950-76877969 None:intergenic 25.0%
!! AACAATTCTGATCGTTTTAA+AGG + chr3.3:76877105-76877124 None:intergenic 25.0%
!! AATCAATTTGCAAGATTTTG+GGG + chr3.3:76877393-76877412 None:intergenic 25.0%
!! AATGATAGTGACCTTTATAT+TGG - chr3.3:76877936-76877955 MS.gene06651:intron 25.0%
!! AATGTTATTCATTTTGAACG+TGG - chr3.3:76878379-76878398 MS.gene06651:intron 25.0%
!! ATGATAGTGACCTTTATATT+GGG - chr3.3:76877937-76877956 MS.gene06651:intron 25.0%
!! ATTATAAACAACTCCAGTTT+TGG - chr3.3:76878073-76878092 MS.gene06651:CDS 25.0%
!! TTTTTGCTTTGATGTATCTA+TGG - chr3.3:76877465-76877484 MS.gene06651:intron 25.0%
!!! CAGTTTTGGAATTAGTAAAA+GGG - chr3.3:76878087-76878106 MS.gene06651:CDS 25.0%
!!! GTATTGGTTTGTTTTAATGA+GGG + chr3.3:76876971-76876990 None:intergenic 25.0%
!!! TATTGGTTTGTTTTAATGAG+GGG + chr3.3:76876970-76876989 None:intergenic 25.0%
AGCAACCTCAATGATAAAAA+AGG + chr3.3:76877779-76877798 None:intergenic 30.0%
AGTTGCTTAATATTGTACAC+CGG - chr3.3:76876862-76876881 MS.gene06651:CDS 30.0%
ATTGCCATTAGATAAACAGA+TGG + chr3.3:76877903-76877922 None:intergenic 30.0%
CAATAATTAGAGAACCAACA+AGG + chr3.3:76878196-76878215 None:intergenic 30.0%
CAATGAATTCTCTAAGCTTA+TGG - chr3.3:76879809-76879828 MS.gene06651:CDS 30.0%
CTTATAAGCCAAGCTAAATA+TGG + chr3.3:76878449-76878468 None:intergenic 30.0%
TAGCAAAATGTGTGGTTATT+TGG - chr3.3:76878221-76878240 MS.gene06651:intron 30.0%
TATTAATGATGCACATTCAC+TGG + chr3.3:76877358-76877377 None:intergenic 30.0%
TCATCAATGAATATGATAGC+AGG + chr3.3:76878478-76878497 None:intergenic 30.0%
TCTATTTGATCTTTGCAAGA+AGG - chr3.3:76878930-76878949 MS.gene06651:intron 30.0%
TGTCTAGAAGAGAAAACTAA+AGG - chr3.3:76879147-76879166 MS.gene06651:intron 30.0%
TTCCCTTCACTTCAAAATTA+GGG - chr3.3:76879466-76879485 MS.gene06651:CDS 30.0%
TTTCCCTTCACTTCAAAATT+AGG - chr3.3:76879465-76879484 MS.gene06651:CDS 30.0%
! AACCTTTTCTGCTATAAAAC+CGG - chr3.3:76877502-76877521 MS.gene06651:intron 30.0%
! ATCAATTTGCAAGATTTTGG+GGG + chr3.3:76877392-76877411 None:intergenic 30.0%
! ATCGCACAAATCTAAAACTT+AGG + chr3.3:76879193-76879212 None:intergenic 30.0%
! ATTCATTTTGAACGTGGTTT+TGG - chr3.3:76878385-76878404 MS.gene06651:intron 30.0%
! CCTTTTACTAATTCCAAAAC+TGG + chr3.3:76878089-76878108 None:intergenic 30.0%
! TAAAGGACTCACAATGATTT+TGG - chr3.3:76877412-76877431 MS.gene06651:intron 30.0%
! TATATAGCTGGTTTATGCAA+GGG - chr3.3:76878892-76878911 MS.gene06651:intron 30.0%
! TCGCACAAATCTAAAACTTA+GGG + chr3.3:76879192-76879211 None:intergenic 30.0%
! TGACACTTAATTTTCATCCA+TGG - chr3.3:76878616-76878635 MS.gene06651:intron 30.0%
! TTATATAGCTGGTTTATGCA+AGG - chr3.3:76878891-76878910 MS.gene06651:intron 30.0%
! TTGTTGATTAGCAAAATGTG+TGG - chr3.3:76878213-76878232 MS.gene06651:intron 30.0%
!! GTCAACTACTTTAGAACTTA+CGG + chr3.3:76878600-76878619 None:intergenic 30.0%
!! GTTTTAGATTTGTGCGATTT+TGG - chr3.3:76879195-76879214 MS.gene06651:intron 30.0%
!! TACGGCAAATTTTAATGACA+TGG - chr3.3:76879284-76879303 MS.gene06651:intron 30.0%
!!! CCAGTTTTGGAATTAGTAAA+AGG - chr3.3:76878086-76878105 MS.gene06651:CDS 30.0%
!!! CGTATTGGTTTGTTTTAATG+AGG + chr3.3:76876972-76876991 None:intergenic 30.0%
!!! GATGAAGTAGACAGTTTTTT+GGG - chr3.3:76878493-76878512 MS.gene06651:intron 30.0%
!!! TAATTTTGAAGTGAAGGGAA+AGG + chr3.3:76879466-76879485 None:intergenic 30.0%
!!! TGATGAAGTAGACAGTTTTT+TGG - chr3.3:76878492-76878511 MS.gene06651:intron 30.0%
!!! TTCCCTAATTTTGAAGTGAA+GGG + chr3.3:76879471-76879490 None:intergenic 30.0%
!!! TTTCCCTAATTTTGAAGTGA+AGG + chr3.3:76879472-76879491 None:intergenic 30.0%
AAAACTATTGGGTCCTCAAA+AGG - chr3.3:76877134-76877153 MS.gene06651:intron 35.0%
AAACTATTGGGTCCTCAAAA+GGG - chr3.3:76877135-76877154 MS.gene06651:intron 35.0%
AAAGCAATTGCAAATCGTCT+TGG - chr3.3:76876940-76876959 MS.gene06651:CDS 35.0%
AAATTAGGGAAAAACACGTG+AGG + chr3.3:76879256-76879275 None:intergenic 35.0%
AACCATTACGGATCTATTGT+AGG + chr3.3:76877712-76877731 None:intergenic 35.0%
AACTTGATGAAGCGATACTT+CGG - chr3.3:76878761-76878780 MS.gene06651:intron 35.0%
AAGGCCATCTGTTTATCTAA+TGG - chr3.3:76877896-76877915 MS.gene06651:CDS 35.0%
AATCATAAAGGGGCTAAACT+TGG + chr3.3:76879225-76879244 None:intergenic 35.0%
AATCTCATGAGTATGTGGTT+CGG - chr3.3:76877255-76877274 MS.gene06651:intron 35.0%
AATTAGGGAAAAACACGTGA+GGG + chr3.3:76879255-76879274 None:intergenic 35.0%
ACAAACTTCGATTCTGATTC+TGG + chr3.3:76876805-76876824 None:intergenic 35.0%
AGAAAAGGTTAATATTGGCC+AGG + chr3.3:76877492-76877511 None:intergenic 35.0%
AGGGGCTACAAAATCATAAA+GGG + chr3.3:76879236-76879255 None:intergenic 35.0%
ATATGTTGCTGTGTGTCTAA+TGG - chr3.3:76877618-76877637 MS.gene06651:intron 35.0%
ATCATAAAGGGGCTAAACTT+GGG + chr3.3:76879224-76879243 None:intergenic 35.0%
ATGTGTGGTTATTTGGTTGA+AGG - chr3.3:76878228-76878247 MS.gene06651:intron 35.0%
CAATACGAAGATGTAATAGC+TGG - chr3.3:76876985-76877004 MS.gene06651:intron 35.0%
CAGCTATTACATCTTCGTAT+TGG + chr3.3:76876987-76877006 None:intergenic 35.0%
GAAAAGGTTAATATTGGCCA+GGG + chr3.3:76877491-76877510 None:intergenic 35.0%
GTTTGTCTTGTCGTTCAAAA+AGG + chr3.3:76877531-76877550 None:intergenic 35.0%
TCAGTAATTTCGATCACCAA+AGG + chr3.3:76879618-76879637 None:intergenic 35.0%
TCTAAATCAAACTGCGACAA+AGG + chr3.3:76879678-76879697 None:intergenic 35.0%
TTAAAGTAGTAGACGTTGCT+AGG + chr3.3:76878669-76878688 None:intergenic 35.0%
TTAGACACACAGCAACATAT+TGG + chr3.3:76877618-76877637 None:intergenic 35.0%
TTAGCTGCTAAGACTGATAT+TGG - chr3.3:76878023-76878042 MS.gene06651:intron 35.0%
TTTGCCCATGGAAAACTATT+GGG - chr3.3:76877123-76877142 MS.gene06651:intron 35.0%
! AAATTAGGGAAAAGCATGTG+AGG - chr3.3:76879480-76879499 MS.gene06651:CDS 35.0%
! AATTAGGGAAAAGCATGTGA+GGG - chr3.3:76879481-76879500 MS.gene06651:CDS 35.0%
! AGTCTTGTACTCTTGTTAAC+TGG - chr3.3:76879588-76879607 MS.gene06651:CDS 35.0%
! CACAAATCTAAAACTTAGGG+GGG + chr3.3:76879189-76879208 None:intergenic 35.0%
! CGCACAAATCTAAAACTTAG+GGG + chr3.3:76879191-76879210 None:intergenic 35.0%
! GCACAAATCTAAAACTTAGG+GGG + chr3.3:76879190-76879209 None:intergenic 35.0%
! TCCCTAATTTTGAGCTGATA+CGG - chr3.3:76879266-76879285 MS.gene06651:intron 35.0%
! TGATATTGGAACTGGTTTCT+AGG - chr3.3:76878037-76878056 MS.gene06651:intron 35.0%
! TTTTCCTATTAGAGAACTGC+TGG - chr3.3:76878960-76878979 MS.gene06651:intron 35.0%
!! ACTACTTTAGAACTTACGGT+CGG + chr3.3:76878596-76878615 None:intergenic 35.0%
!!! GGTTGCCTTTTTTATCATTG+AGG - chr3.3:76877771-76877790 MS.gene06651:CDS 35.0%
AAAGCTATTGCTAAGGAGTG+TGG - chr3.3:76877204-76877223 MS.gene06651:intron 40.0%
AAATGCAGAACTGAAGGGAA+AGG + chr3.3:76879396-76879415 None:intergenic 40.0%
AAATGCCCATAAATCGATCG+AGG + chr3.3:76877993-76878012 None:intergenic 40.0%
AAGAATCCTGGGAATCTTGT+TGG + chr3.3:76879854-76879873 None:intergenic 40.0%
AATGCCCATAAATCGATCGA+GGG + chr3.3:76877992-76878011 None:intergenic 40.0%
AATTCCAGACCAGAAAGAGA+GGG - chr3.3:76878810-76878829 MS.gene06651:intron 40.0%
ACAAGCAAATGCAGAACTGA+AGG + chr3.3:76879402-76879421 None:intergenic 40.0%
AGAATGCCCTTTCAACTTCA+CGG - chr3.3:76879697-76879716 MS.gene06651:CDS 40.0%
AGAGAGGGTTGAGATATTGA+AGG - chr3.3:76878825-76878844 MS.gene06651:intron 40.0%
AGGGGCTACAAAATCATGAA+GGG - chr3.3:76879500-76879519 MS.gene06651:CDS 40.0%
AGTGTCTGCCATATTTAGCT+TGG - chr3.3:76878438-76878457 MS.gene06651:intron 40.0%
ATATCTCAACCCTCTCTTTC+TGG + chr3.3:76878822-76878841 None:intergenic 40.0%
ATTAGGGAAAAACACGTGAG+GGG + chr3.3:76879254-76879273 None:intergenic 40.0%
ATTCCAACTTCAAAGGCTTG+AGG + chr3.3:76878793-76878812 None:intergenic 40.0%
CAAGCAAATGCAGAACTGAA+GGG + chr3.3:76879401-76879420 None:intergenic 40.0%
CGGGTCAAGATATGAATAAC+CGG + chr3.3:76876884-76876903 None:intergenic 40.0%
CTTGTGTTCAAGAGCTTTCT+TGG + chr3.3:76876920-76876939 None:intergenic 40.0%
GAACCACATACTCATGAGAT+TGG + chr3.3:76877256-76877275 None:intergenic 40.0%
GAAGCATAGTTATGTATGCC+AGG + chr3.3:76878314-76878333 None:intergenic 40.0%
GAGCGGCTTTCATTAATGTT+AGG - chr3.3:76877226-76877245 MS.gene06651:intron 40.0%
GAGCTTTCTTGGATGATTGA+CGG + chr3.3:76876909-76876928 None:intergenic 40.0%
GAGGGGCTACAAAATCATAA+AGG + chr3.3:76879237-76879256 None:intergenic 40.0%
GATGTTGAGTTCGACAGTAT+CGG - chr3.3:76877033-76877052 MS.gene06651:intron 40.0%
GCCGTATCAGCTCAAAATTA+GGG + chr3.3:76879270-76879289 None:intergenic 40.0%
GCTAAGACTGATATTGGAAC+TGG - chr3.3:76878029-76878048 MS.gene06651:intron 40.0%
GGGGCTACAAAATCATAAAG+GGG + chr3.3:76879235-76879254 None:intergenic 40.0%
GGTGAGTCAGTTGATTATCA+GGG - chr3.3:76879774-76879793 MS.gene06651:CDS 40.0%
GTTTGCCCATGGAAAACTAT+TGG - chr3.3:76877122-76877141 MS.gene06651:intron 40.0%
TAACTCGAGCATTCTCTACA+CGG + chr3.3:76878711-76878730 None:intergenic 40.0%
TCATAAAGGGGCTAAACTTG+GGG + chr3.3:76879223-76879242 None:intergenic 40.0%
TCATCCAGCAGTTCTCTAAT+AGG + chr3.3:76878967-76878986 None:intergenic 40.0%
TGCCGTATCAGCTCAAAATT+AGG + chr3.3:76879271-76879290 None:intergenic 40.0%
TGCCTACAATAGATCCGTAA+TGG - chr3.3:76877707-76877726 MS.gene06651:CDS 40.0%
TGGTGAGTCAGTTGATTATC+AGG - chr3.3:76879773-76879792 MS.gene06651:CDS 40.0%
TGTAGAGAATGCTCGAGTTA+TGG - chr3.3:76878711-76878730 MS.gene06651:intron 40.0%
TGTCCAATCTCATGAGTATG+TGG - chr3.3:76877250-76877269 MS.gene06651:intron 40.0%
TTCTTGGATGATTGACGGTT+CGG + chr3.3:76876904-76876923 None:intergenic 40.0%
TTGTCGTTCAAAAAGGTAGC+CGG + chr3.3:76877524-76877543 None:intergenic 40.0%
! AAACTGAGTTCATGGCTCTA+TGG - chr3.3:76878557-76878576 MS.gene06651:intron 40.0%
! AACTGAGTTCATGGCTCTAT+GGG - chr3.3:76878558-76878577 MS.gene06651:intron 40.0%
! AGGACCCAATAGTTTTCCAT+GGG + chr3.3:76877130-76877149 None:intergenic 40.0%
! ATCGCTTCATCAAGTTCTGA+AGG + chr3.3:76878757-76878776 None:intergenic 40.0%
! ATTAGGGAAAAGCATGTGAG+GGG - chr3.3:76879482-76879501 MS.gene06651:CDS 40.0%
! GCTTGCTAAAGCTATTGCTA+AGG - chr3.3:76877197-76877216 MS.gene06651:intron 40.0%
! GTCTGGAATTCCAACTTCAA+AGG + chr3.3:76878800-76878819 None:intergenic 40.0%
! TACAACAAGACACCCTTTTG+AGG + chr3.3:76877150-76877169 None:intergenic 40.0%
! TCATCAAGACGAACGTTTTC+TGG - chr3.3:76879753-76879772 MS.gene06651:CDS 40.0%
!! AATATTTAACGAGGGCATCC+TGG - chr3.3:76878293-76878312 MS.gene06651:intron 40.0%
!! AGCAATAGCTTTAGCAAGCA+TGG + chr3.3:76877196-76877215 None:intergenic 40.0%
!! AGCCGGTTTTATAGCAGAAA+AGG + chr3.3:76877507-76877526 None:intergenic 40.0%
!! CAAAAGGGTGTCTTGTTGTA+TGG - chr3.3:76877150-76877169 MS.gene06651:intron 40.0%
!! GGAAAGGTTCTGAACCATTA+CGG + chr3.3:76877724-76877743 None:intergenic 40.0%
!! TCGCTTCATCAAGTTCTGAA+GGG + chr3.3:76878756-76878775 None:intergenic 40.0%
!! TTTCCTCAAGCCTTTGAAGT+TGG - chr3.3:76878787-76878806 MS.gene06651:intron 40.0%
AACTCAACATCGATGTGGTC+AGG + chr3.3:76877024-76877043 None:intergenic 45.0%
AATATGCTGTGCACAGCTGT+TGG - chr3.3:76879080-76879099 MS.gene06651:intron 45.0%
AATCCTGGGAATCTTGTTGG+AGG + chr3.3:76879851-76879870 None:intergenic 45.0%
AGAATGTTGTGCTGGATGTG+TGG - chr3.3:76879537-76879556 MS.gene06651:CDS 45.0%
AGGTTATCTTAAAGGGCGAG+AGG - chr3.3:76878845-76878864 MS.gene06651:intron 45.0%
ATAAAGGGGCTAAACTTGGG+GGG + chr3.3:76879221-76879240 None:intergenic 45.0%
CAACCTACGAAATTCCACTG+TGG + chr3.3:76877756-76877775 None:intergenic 45.0%
CATAAAGGGGCTAAACTTGG+GGG + chr3.3:76879222-76879241 None:intergenic 45.0%
CGATCAGAATTGTTTGCCCA+TGG - chr3.3:76877111-76877130 MS.gene06651:intron 45.0%
CTACGAAATTCCACTGTGGT+GGG + chr3.3:76877752-76877771 None:intergenic 45.0%
CTTTGATGTATCTATGGCCC+TGG - chr3.3:76877471-76877490 MS.gene06651:intron 45.0%
GAATTCCAGACCAGAAAGAG+AGG - chr3.3:76878809-76878828 MS.gene06651:intron 45.0%
GAGGGGCTACAAAATCATGA+AGG - chr3.3:76879499-76879518 MS.gene06651:CDS 45.0%
GGAGTGTATCTGTATAGCGA+TGG - chr3.3:76878166-76878185 MS.gene06651:CDS 45.0%
GGTTATCTTAAAGGGCGAGA+GGG - chr3.3:76878846-76878865 MS.gene06651:intron 45.0%
GGTTTATGCAAGGGTTACAC+AGG - chr3.3:76878901-76878920 MS.gene06651:intron 45.0%
TAACCTCCAACAAGATTCCC+AGG - chr3.3:76879845-76879864 MS.gene06651:CDS 45.0%
TACAGATACACTCCTGAACG+AGG + chr3.3:76878160-76878179 None:intergenic 45.0%
TCAAACTGCGACAAAGGTCT+AGG + chr3.3:76879672-76879691 None:intergenic 45.0%
TCCTGAACGAGGAACATACA+GGG + chr3.3:76878149-76878168 None:intergenic 45.0%
TCTTGGATGATTGACGGTTC+GGG + chr3.3:76876903-76876922 None:intergenic 45.0%
TGCTGGATGACGAGAAGAAA+GGG - chr3.3:76878977-76878996 MS.gene06651:intron 45.0%
TGCTGTGTGTCTAATGGTCA+CGG - chr3.3:76877624-76877643 MS.gene06651:intron 45.0%
TGTCGAACTCAACATCGATG+TGG + chr3.3:76877029-76877048 None:intergenic 45.0%
! AGTTCATGGCTCTATGGGAT+GGG - chr3.3:76878563-76878582 MS.gene06651:intron 45.0%
! GAGGACCCAATAGTTTTCCA+TGG + chr3.3:76877131-76877150 None:intergenic 45.0%
! TATTGCTAAGGAGTGTGGAG+CGG - chr3.3:76877209-76877228 MS.gene06651:intron 45.0%
!! GCTTGCTATGTTTGCCATAG+TGG - chr3.3:76879309-76879328 MS.gene06651:intron 45.0%
!! TGGAACTGGTTTCTAGGATG+AGG - chr3.3:76878043-76878062 MS.gene06651:intron 45.0%
!!! TTTTTTTTATAAAAAAAAAC+TGG - chr3.3:76879349-76879368 MS.gene06651:intron 5.0%
AAACCTGCAGGGAGTTCAGT+CGG + chr3.3:76877820-76877839 None:intergenic 50.0%
ACGTCGTTCATCAGAACACG+AGG - chr3.3:76878519-76878538 MS.gene06651:intron 50.0%
CCACCACAGTGGAATTTCGT+AGG - chr3.3:76877750-76877769 MS.gene06651:CDS 50.0%
CCCATAAATCGATCGAGGGA+GGG + chr3.3:76877988-76878007 None:intergenic 50.0%
CCTACGAAATTCCACTGTGG+TGG + chr3.3:76877753-76877772 None:intergenic 50.0%
CCTTTCAACTTCACGGACGA+CGG - chr3.3:76879704-76879723 MS.gene06651:CDS 50.0%
CGTCGTCCGTGAAGTTGAAA+GGG + chr3.3:76879706-76879725 None:intergenic 50.0%
CTCCTGAACGAGGAACATAC+AGG + chr3.3:76878150-76878169 None:intergenic 50.0%
CTGCTGGATGACGAGAAGAA+AGG - chr3.3:76878976-76878995 MS.gene06651:intron 50.0%
CTTGTTAACTGGCGTGCCTT+TGG - chr3.3:76879599-76879618 MS.gene06651:CDS 50.0%
GAAGCTGTTTGTGCGCACAT+AGG - chr3.3:76878254-76878273 MS.gene06651:intron 50.0%
TCCCTGTATGTTCCTCGTTC+AGG - chr3.3:76878145-76878164 MS.gene06651:CDS 50.0%
TTCGGCGATGCAACTAAGCT+TGG - chr3.3:76877273-76877292 MS.gene06651:intron 50.0%
TTGTATGGACCACCTGGTAC+TGG - chr3.3:76877165-76877184 MS.gene06651:intron 50.0%
TTTCCTAGATCCCACCACAG+TGG - chr3.3:76877739-76877758 MS.gene06651:CDS 50.0%
! ACTGTGGTGGGATCTAGGAA+AGG + chr3.3:76877740-76877759 None:intergenic 50.0%
! ATTCCACTGTGGTGGGATCT+AGG + chr3.3:76877745-76877764 None:intergenic 50.0%
! CCCTCCCTCGATCGATTTAT+GGG - chr3.3:76877985-76878004 MS.gene06651:intron 50.0%
! GAGTTCATGGCTCTATGGGA+TGG - chr3.3:76878562-76878581 MS.gene06651:intron 50.0%
! GATTTTATTAGCGGCGAGCG+CGG - chr3.3:76876834-76876853 MS.gene06651:CDS 50.0%
! GTCTTGTTGTATGGACCACC+TGG - chr3.3:76877159-76877178 MS.gene06651:intron 50.0%
! GTTCGACAGTATCGGAGGAT+TGG - chr3.3:76877041-76877060 MS.gene06651:intron 50.0%
! GTTGAGTTCGACAGTATCGG+AGG - chr3.3:76877036-76877055 MS.gene06651:intron 50.0%
! TCAACCCTCTCTTTCTGGTC+TGG + chr3.3:76878817-76878836 None:intergenic 50.0%
! TCCCTCCCTCGATCGATTTA+TGG - chr3.3:76877984-76878003 MS.gene06651:intron 50.0%
!! AGCATGGTTTTGCCAGTACC+AGG + chr3.3:76877180-76877199 None:intergenic 50.0%
!! ATGGTTTTGCCAGTACCAGG+TGG + chr3.3:76877177-76877196 None:intergenic 50.0%
ACGCGAGCAGAATGTTGTGC+TGG - chr3.3:76879529-76879548 MS.gene06651:CDS 55.0%
ACGGCTGTTGCAAGCGAGTA+CGG - chr3.3:76879723-76879742 MS.gene06651:CDS 55.0%
AGCACAACATTCTGCTCGCG+TGG + chr3.3:76879530-76879549 None:intergenic 55.0%
ATAGCGATGGCTGCCCTTGT+TGG - chr3.3:76878179-76878198 MS.gene06651:CDS 55.0%
CCGTCGTCCGTGAAGTTGAA+AGG + chr3.3:76879707-76879726 None:intergenic 55.0%
GATGTGTGGCGAGACTTGAC+GGG - chr3.3:76879551-76879570 MS.gene06651:CDS 55.0%
GCCCATAAATCGATCGAGGG+AGG + chr3.3:76877989-76878008 None:intergenic 55.0%
GCGCGTCAAACAAACCTGCA+GGG + chr3.3:76877831-76877850 None:intergenic 55.0%
GGATGTGTGGCGAGACTTGA+CGG - chr3.3:76879550-76879569 MS.gene06651:CDS 55.0%
TCTAATGGTCACGGCCTCAC+AGG - chr3.3:76877633-76877652 MS.gene06651:intron 55.0%
TGCGCGTCAAACAAACCTGC+AGG + chr3.3:76877832-76877851 None:intergenic 55.0%
TTTCCGACTGAACTCCCTGC+AGG - chr3.3:76877814-76877833 MS.gene06651:CDS 55.0%
!! CAGCTGTTGGCTGACTTGAC+TGG - chr3.3:76879093-76879112 MS.gene06651:intron 55.0%
TTCCACGACGTGCACCTGTG+AGG + chr3.3:76877650-76877669 None:intergenic 60.0%
GGCCTCACAGGTGCACGTCG+TGG - chr3.3:76877645-76877664 MS.gene06651:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 76876790 76879875 76876790 ID=MS.gene06651
chr3.3 mRNA 76876790 76879875 76876790 ID=MS.gene06651.t1;Parent=MS.gene06651
chr3.3 exon 76879371 76879875 76879371 ID=MS.gene06651.t1.exon1;Parent=MS.gene06651.t1
chr3.3 CDS 76879371 76879875 76879371 ID=cds.MS.gene06651.t1;Parent=MS.gene06651.t1
chr3.3 exon 76878067 76878225 76878067 ID=MS.gene06651.t1.exon2;Parent=MS.gene06651.t1
chr3.3 CDS 76878067 76878225 76878067 ID=cds.MS.gene06651.t1;Parent=MS.gene06651.t1
chr3.3 exon 76877654 76877949 76877654 ID=MS.gene06651.t1.exon3;Parent=MS.gene06651.t1
chr3.3 CDS 76877654 76877949 76877654 ID=cds.MS.gene06651.t1;Parent=MS.gene06651.t1
chr3.3 exon 76876790 76876999 76876790 ID=MS.gene06651.t1.exon4;Parent=MS.gene06651.t1
chr3.3 CDS 76876790 76876999 76876790 ID=cds.MS.gene06651.t1;Parent=MS.gene06651.t1
Gene Sequence

>MS.gene06651

ATGTCGAATTCACCAGAATCAGAATCGAAGTTTGTAACTGATTTGATTTTATTAGCGGCGAGCGCGGCATTCAGTTGCTTAATATTGTACACCGGTTATTCATATCTTGACCCGAACCGTCAATCATCCAAGAAAGCTCTTGAACACAAGAAAGCAATTGCAAATCGTCTTGGTCGTCCCCTCATTAAAACAAACCAATACGAAGATGTAATAGCTGGTGATGTTATAAATCCTGACCACATCGATGTTGAGTTCGACAGTATCGGAGGATTGGAAGCTATTAAAGAAGCTTTGTTTGAGCTTGTTATTCTTCCTTTAAAACGATCAGAATTGTTTGCCCATGGAAAACTATTGGGTCCTCAAAAGGGTGTCTTGTTGTATGGACCACCTGGTACTGGCAAAACCATGCTTGCTAAAGCTATTGCTAAGGAGTGTGGAGCGGCTTTCATTAATGTTAGGATGTCCAATCTCATGAGTATGTGGTTCGGCGATGCAACTAAGCTTGGTAAGTCTGCGCTATTTCTGAATGATGATTCTTATGTGCAATCTTTTGAGTGTTTGAATTCCAGTGAATGTGCATCATTAATATTTATAAGTTACCCCCAAAATCTTGCAAATTGATTAAAGGACTCACAATGATTTTGGTATATTCTGTATTTATCAGAATCTTCTGTATTTTTGCTTTGATGTATCTATGGCCCTGGCCAATATTAACCTTTTCTGCTATAAAACCGGCTACCTTTTTGAACGACAAGACAAACTGCTGTTGATGAATGTTCTCTAGACAATCTATTTAAATTCAATATCTTGTGAGAGAATATGTAGCCAATATGTTGCTGTGTGTCTAATGGTCACGGCCTCACAGGTGCACGTCGTGGAATAAGCCTCTTGTAAATGTAATATAACTTATAGAAGTCTGCCTACAATAGATCCGTAATGGTTCAGAACCTTTCCTAGATCCCACCACAGTGGAATTTCGTAGGTTGCCTTTTTTATCATTGAGGTTGCTGTTTTTTGCTTTCAGTTTCCGACTGAACTCCCTGCAGGTTTGTTTGACGCGCATGCAATTTATATTGCTTACAATAGATTCATTCTGTTTGATAGATAAGGCCATCTGTTTATCTAATGGCAATGTGTTGTTCTGATAATGATAGTGACCTTTATATTGGGAAACAAGTTTATAACATATGAATATCCCTCCCTCGATCGATTTATGGGCATTTGAAAAACTTTTTAGCTGCTAAGACTGATATTGGAACTGGTTTCTAGGATGAGGCTAAAATATTATAAACAACTCCAGTTTTGGAATTAGTAAAAGGGTTTCTGTTTATGTTTATGCTGTTTGAGTTTTTTTGTCCCTGTATGTTCCTCGTTCAGGAGTGTATCTGTATAGCGATGGCTGCCCTTGTTGGTTCTCTAATTATTGTTGATTAGCAAAATGTGTGGTTATTTGGTTGAAGGCTAGAAGCTGTTTGTGCGCACATAGGTCAAATTCTTCATTAGAATATTTAACGAGGGCATCCTGGCATACATAACTATGCTTCATTTATCAAACCCTAATATAATTGTATCTAATCTTTCATGCGATCAATGTTATTCATTTTGAACGTGGTTTTGGCCTATCGTTAATATTATGTTTTTCTTATGCAGTGTCTGCCATATTTAGCTTGGCTTATAAGCTTCAGCCTGCTATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTTCATCAGAACACGAGGCTTCGCTAAATATGAAAACTGAGTTCATGGCTCTATGGGATGGGTTCAGCACCGACCGTAAGTTCTAAAGTAGTTGACACTTAATTTTCATCCATGGCATAAATTTTCAAAATATGAGGATTTTCCTAGCAACGTCTACTACTTTAAATATTTTTTCTTTTGGTTTCCGTGTAGAGAATGCTCGAGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCGATACTTCGGCGTTTTCCTCAAGCCTTTGAAGTTGGAATTCCAGACCAGAAAGAGAGGGTTGAGATATTGAAGGTTATCTTAAAGGGCGAGAGGGTTGAAGATAACATAGACTTCAATTATATAGCTGGTTTATGCAAGGGTTACACAGGTTCAGATCTATTTGATCTTTGCAAGAAGGCTGCATATTTTCCTATTAGAGAACTGCTGGATGACGAGAAGAAAGGGAAACAATCTCAAGTTAGTATATGTGTCATTATCTTTGACTTTCTTCTCTGCTATAATTTAAAATTTTCACAATAGTGAATAATATGCTGTGCACAGCTGTTGGCTGACTTGACTGGACTGCATTTCTACATCTGTTTCAGTTTCTGTTGTCTAGAAGAGAAAACTAAAGGCTTAATTGCACTTTTGCCCCCCTAAGTTTTAGATTTGTGCGATTTTGGCCCCCCAAGTTTAGCCCCTTTATGATTTTGTAGCCCCTCACGTGTTTTTCCCTAATTTTGAGCTGATACGGCAAATTTTAATGACATGGAAGCTTGCTATGTTTGCCATAGTGGATATTATCATTTTTATTTTTTTTTTATAAAAAAAAACTGGTAAAATTGGAGAGCTCACATGCCTTTCCCTTCAGTTCTGCATTTGCTTGTTTCCCGAATTGTTTAAAAGTGAAATCTTGCACTTCAAATAGCCTTTCCCTTCACTTCAAAATTAGGGAAAAGCATGTGAGGGGCTACAAAATCATGAAGGGAAAGCCACGCGAGCAGAATGTTGTGCTGGATGTGTGGCGAGACTTGACGGGATACAGTTTCATATAGTCTTGTACTCTTGTTAACTGGCGTGCCTTTGGTGATCGAAATTACTGAGCCGTGTTATTTTATTTTTATGTTTCAGGAACCTAGACCTTTGTCGCAGTTTGATTTAGAGAATGCCCTTTCAACTTCACGGACGACGGCTGTTGCAAGCGAGTACGGCGTGTCATCATCAAGACGAACGTTTTCTGGTGAGTCAGTTGATTATCAGGGTCAAGCTGCAATCAATGAATTCTCTAAGCTTATGGTTTCTTATATGCTTAACCTCCAACAAGATTCCCAGGATTCTTAA
Protein sequence

>MS.gene06651.t1

MSNSPESESKFVTDLILLAASAAFSCLILYTGYSYLDPNRQSSKKALEHKKAIANRLGRPLIKTNQYEDVIAGDVINPDHIDVEFDSIGGLEAIKEALFELVILPLKRSELFAHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKECGAAFINVRMSNLMSMWFGDATKLVSAIFSLAYKLQPAIIFIDEVDSFLGQRRSSEHEASLNMKTEFMALWDGFSTDQNARVMVLAATNRPSELDEAILRRFPQAFEVGIPDQKERVEILKVILKGERVEDNIDFNYIAGLCKGYTGSDLFDLCKKAAYFPIRELLDDEKKGKQSQEPRPLSQFDLENALSTSRTTAVASEYGVSSSRRTFSGESVDYQGQAAINEFSKLMVSYMLNLQQDSQDS