Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066528.t1 | XP_003609672.1 | 97.1 | 454 | 13 | 0 | 1 | 454 | 1 | 454 | 4.20E-268 | 933.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066528.t1 | O22775 | 80.1 | 462 | 80 | 3 | 1 | 453 | 1 | 459 | 1.8e-227 | 789.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066528.t1 | G7JLH4 | 97.1 | 454 | 13 | 0 | 1 | 454 | 1 | 454 | 3.0e-268 | 933.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055531 | MS.gene066528 | 0.806923 | 6.50E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066528.t1 | MTR_4g119880 | 98.899 | 454 | 5 | 0 | 1 | 454 | 1 | 454 | 0.0 | 943 |
MS.gene066528.t1 | MTR_7g108675 | 78.373 | 467 | 87 | 3 | 1 | 454 | 1 | 466 | 0.0 | 754 |
MS.gene066528.t1 | MTR_8g058553 | 78.072 | 415 | 77 | 3 | 1 | 402 | 1 | 414 | 0.0 | 669 |
MS.gene066528.t1 | MTR_3g037340 | 58.469 | 431 | 154 | 4 | 10 | 440 | 36 | 441 | 0.0 | 546 |
MS.gene066528.t1 | MTR_4g108940 | 57.240 | 442 | 165 | 4 | 8 | 449 | 28 | 445 | 0.0 | 545 |
MS.gene066528.t1 | MTR_5g015260 | 42.526 | 388 | 181 | 7 | 79 | 431 | 66 | 446 | 8.83e-111 | 334 |
MS.gene066528.t1 | MTR_4g097240 | 39.486 | 428 | 206 | 8 | 27 | 421 | 19 | 426 | 1.93e-108 | 328 |
MS.gene066528.t1 | MTR_4g097230 | 43.466 | 352 | 160 | 6 | 107 | 424 | 69 | 415 | 1.37e-101 | 310 |
MS.gene066528.t1 | MTR_4g108950 | 49.606 | 127 | 20 | 1 | 285 | 411 | 1 | 83 | 2.66e-33 | 121 |
MS.gene066528.t1 | MTR_4g132910 | 82.051 | 39 | 7 | 0 | 357 | 395 | 582 | 620 | 2.16e-13 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066528.t1 | AT3G62720 | 77.874 | 461 | 93 | 4 | 1 | 454 | 1 | 459 | 0.0 | 763 |
MS.gene066528.t1 | AT3G62720 | 77.874 | 461 | 93 | 4 | 1 | 454 | 1 | 459 | 0.0 | 763 |
MS.gene066528.t1 | AT4G02500 | 79.914 | 463 | 81 | 3 | 1 | 454 | 1 | 460 | 0.0 | 761 |
MS.gene066528.t1 | AT1G74380 | 58.879 | 428 | 153 | 5 | 13 | 440 | 42 | 446 | 0.0 | 553 |
MS.gene066528.t1 | AT5G07720 | 58.469 | 431 | 155 | 5 | 10 | 440 | 39 | 445 | 0.0 | 551 |
MS.gene066528.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene066528.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene066528.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene066528.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene066528.t1 | AT2G22900 | 42.120 | 349 | 159 | 5 | 107 | 417 | 89 | 432 | 1.92e-96 | 297 |
MS.gene066528.t1 | AT4G37690 | 40.974 | 349 | 163 | 6 | 107 | 417 | 72 | 415 | 1.35e-94 | 292 |
MS.gene066528.t1 | AT4G38310 | 44.444 | 108 | 56 | 2 | 107 | 213 | 13 | 117 | 6.40e-28 | 107 |
Find 0 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTAGGATTAATAAAATT+AGG | - | 32584:6115-6134 | MS.gene066528:intergenic | 10.0% |
!! | TAATAAAATTAGGATAATCA+GGG | - | 32584:6105-6124 | MS.gene066528:intergenic | 15.0% |
!! | TTAATAAAATTAGGATAATC+AGG | - | 32584:6106-6125 | MS.gene066528:intergenic | 15.0% |
!! | AGAATAAGATTGATTATTGT+AGG | + | 32584:6218-6237 | MS.gene066528:CDS | 20.0% |
!! | ATTATTATTTGCATGGTTAT+TGG | + | 32584:6716-6735 | MS.gene066528:CDS | 20.0% |
!! | TTATTATTTGCATGGTTATT+GGG | + | 32584:6717-6736 | MS.gene066528:CDS | 20.0% |
! | GAGAATCATTATTATTTGCA+TGG | + | 32584:6709-6728 | MS.gene066528:CDS | 25.0% |
! | TATTATTTGCATGGTTATTG+GGG | + | 32584:6718-6737 | MS.gene066528:CDS | 25.0% |
! | TGATTTATGATGAGAAGAAT+TGG | + | 32584:6461-6480 | MS.gene066528:CDS | 25.0% |
!! | GATTGAGATTTTCTATAACA+TGG | + | 32584:6249-6268 | MS.gene066528:CDS | 25.0% |
AACAAATAATGATCACCAAC+AGG | - | 32584:6187-6206 | MS.gene066528:intergenic | 30.0% | |
AACAATAGCTTCCTAATCAA+AGG | - | 32584:6316-6335 | MS.gene066528:intergenic | 30.0% | |
AATCAGATATTGCAGATGTA+TGG | + | 32584:6913-6932 | MS.gene066528:CDS | 30.0% | |
ACTTGATATTCTTGATGCTT+GGG | + | 32584:6531-6550 | MS.gene066528:CDS | 30.0% | |
AGTTCATCTTTAACATCAAG+AGG | - | 32584:7000-7019 | MS.gene066528:intergenic | 30.0% | |
ATCTGCTATGGTTTATTTGT+TGG | + | 32584:6648-6667 | MS.gene066528:CDS | 30.0% | |
ATGATTGAGAATTATCATCC+TGG | + | 32584:6766-6785 | MS.gene066528:CDS | 30.0% | |
ATTATTTGCATGGTTATTGG+GGG | + | 32584:6719-6738 | MS.gene066528:CDS | 30.0% | |
ATTGATTATTGTAGGCTTCA+TGG | + | 32584:6226-6245 | MS.gene066528:CDS | 30.0% | |
CTTGATGTTAAAGATGAACT+TGG | + | 32584:7000-7019 | MS.gene066528:CDS | 30.0% | |
TATGATGAGAAGAATTGGAT+TGG | + | 32584:6466-6485 | MS.gene066528:CDS | 30.0% | |
TGATGCTATGTTTACTGATA+TGG | + | 32584:6375-6394 | MS.gene066528:CDS | 30.0% | |
TTGATTATTGTAGGCTTCAT+GGG | + | 32584:6227-6246 | MS.gene066528:CDS | 30.0% | |
! | ATAATTTTGTGATGCATGGT+TGG | + | 32584:6431-6450 | MS.gene066528:CDS | 30.0% |
! | ATGGATCGTGCTTATAATTT+TGG | + | 32584:6886-6905 | MS.gene066528:CDS | 30.0% |
! | GATCATAATTTTGTGATGCA+TGG | + | 32584:6427-6446 | MS.gene066528:CDS | 30.0% |
!! | AATTGGATTGGTTTGAATAC+TGG | + | 32584:6478-6497 | MS.gene066528:CDS | 30.0% |
!!! | ATACTGGAAGTTTTTTGTTG+AGG | + | 32584:6494-6513 | MS.gene066528:CDS | 30.0% |
AAAAGAACACGTGGCTTATT+AGG | - | 32584:6130-6149 | MS.gene066527:intergenic | 35.0% | |
ATTGAAATTCTTCGAGAACG+CGG | - | 32584:5913-5932 | MS.gene066528:intergenic | 35.0% | |
CACTTGATATTCTTGATGCT+TGG | + | 32584:6530-6549 | MS.gene066528:CDS | 35.0% | |
TAATCACCAAATTTCCCACA+AGG | - | 32584:6841-6860 | MS.gene066528:intergenic | 35.0% | |
TGTAAACCTTGTGGGAAATT+TGG | + | 32584:6832-6851 | MS.gene066528:CDS | 35.0% | |
! | ATCCTGAAGTTGAGTTTTTG+TGG | + | 32584:6341-6360 | MS.gene066528:CDS | 35.0% |
! | ATGGTTTATTTGTTGGCAAC+TGG | + | 32584:6655-6674 | MS.gene066528:CDS | 35.0% |
! | GAGAATTATCATCCTGGTTT+TGG | + | 32584:6772-6791 | MS.gene066528:CDS | 35.0% |
! | TGGTTTATTTGTTGGCAACT+GGG | + | 32584:6656-6675 | MS.gene066528:CDS | 35.0% |
! | TTTTGTTGAGGAATTGTCAG+TGG | + | 32584:6506-6525 | MS.gene066528:CDS | 35.0% |
!! | AACTTGATAGCTTTGAAAGC+AGG | - | 32584:7036-7055 | MS.gene066528:intergenic | 35.0% |
!! | TGAGAGGTGTTTGAAACAAA+TGG | + | 32584:6867-6886 | MS.gene066528:CDS | 35.0% |
!!! | ATTTTGGGACCAAGTGTATA+AGG | - | 32584:6040-6059 | MS.gene066528:intergenic | 35.0% |
!!! | GTTATCGTTGTTGTTTTCTG+TGG | - | 32584:5936-5955 | MS.gene066528:intergenic | 35.0% |
AAACCGTGTGAAAATCCTGT+TGG | + | 32584:6169-6188 | MS.gene066528:CDS | 40.0% | |
AAGCTGGGAAGATTCTTACT+AGG | + | 32584:6587-6606 | MS.gene066528:CDS | 40.0% | |
AGCAGATGATCAATCTGCTA+TGG | + | 32584:6636-6655 | MS.gene066528:CDS | 40.0% | |
AGCTGGGAAGATTCTTACTA+GGG | + | 32584:6588-6607 | MS.gene066528:CDS | 40.0% | |
ATCCTCAAAGATGAAGAAGC+TGG | + | 32584:5986-6005 | MS.gene066528:CDS | 40.0% | |
CACCACAAAAACTCAACTTC+AGG | - | 32584:6346-6365 | MS.gene066528:intergenic | 40.0% | |
CCAGTAACTAAAAGAACACG+TGG | - | 32584:6139-6158 | MS.gene066528:intergenic | 40.0% | |
GATTGTCGAGATATCGAAAG+TGG | - | 32584:5969-5988 | MS.gene066528:intergenic | 40.0% | |
GGCTTTACTTGATGCTGAAA+TGG | + | 32584:6270-6289 | MS.gene066528:CDS | 40.0% | |
GTAGAAGAGTGAAGAGAGTT+AGG | + | 32584:6959-6978 | MS.gene066528:CDS | 40.0% | |
GTTTACTGATATGGCTTTCG+AGG | + | 32584:6384-6403 | MS.gene066528:CDS | 40.0% | |
GTTTCAAACACCTCTCAACA+GGG | - | 32584:6864-6883 | MS.gene066528:intergenic | 40.0% | |
TAGGGAGTTAAAGAATCGAC+CGG | + | 32584:6606-6625 | MS.gene066528:CDS | 40.0% | |
TCATCTCTAACCTTCCCTTT+AGG | - | 32584:6568-6587 | MS.gene066528:intergenic | 40.0% | |
TGAACGTTGTTCATCCCAAT+CGG | - | 32584:6065-6084 | MS.gene066528:intergenic | 40.0% | |
TGATCATCTGCTTCGAAAAC+CGG | - | 32584:6628-6647 | MS.gene066528:intergenic | 40.0% | |
TGTTTCAAACACCTCTCAAC+AGG | - | 32584:6865-6884 | MS.gene066528:intergenic | 40.0% | |
TTACTTGATGCTGAAATGGC+TGG | + | 32584:6274-6293 | MS.gene066528:CDS | 40.0% | |
! | ACAGGATTTTCACACGGTTT+AGG | - | 32584:6169-6188 | MS.gene066528:intergenic | 40.0% |
! | CTGAAGTTGAGTTTTTGTGG+TGG | + | 32584:6344-6363 | MS.gene066528:CDS | 40.0% |
! | TCACCAACAGGATTTTCACA+CGG | - | 32584:6175-6194 | MS.gene066528:intergenic | 40.0% |
! | TCATCCCAATCGGAGATTTT+GGG | - | 32584:6055-6074 | MS.gene066528:intergenic | 40.0% |
! | TTATTTGTTGGCAACTGGGA+GGG | + | 32584:6660-6679 | MS.gene066528:CDS | 40.0% |
! | TTCATCCCAATCGGAGATTT+TGG | - | 32584:6056-6075 | MS.gene066528:intergenic | 40.0% |
! | TTTATTTGTTGGCAACTGGG+AGG | + | 32584:6659-6678 | MS.gene066528:CDS | 40.0% |
!! | AGTTGAGTTTTTGTGGTGGA+TGG | + | 32584:6348-6367 | MS.gene066528:CDS | 40.0% |
!! | CATTGGTGACTCATTTTGTG+GGG | + | 32584:6809-6828 | MS.gene066528:CDS | 40.0% |
!! | CCACGTGTTCTTTTAGTTAC+TGG | + | 32584:6136-6155 | MS.gene066528:CDS | 40.0% |
!! | CCATTGGTGACTCATTTTGT+GGG | + | 32584:6808-6827 | MS.gene066528:CDS | 40.0% |
!!! | ATCCTGGTTTTGGTGATCAT+AGG | + | 32584:6782-6801 | MS.gene066528:CDS | 40.0% |
!!! | ATGCTGAAATGGCTGGTTTT+TGG | + | 32584:6281-6300 | MS.gene066528:CDS | 40.0% |
!!! | TGCTGAAATGGCTGGTTTTT+GGG | + | 32584:6282-6301 | MS.gene066528:CDS | 40.0% |
CACCAGCTTCTTCATCTTTG+AGG | - | 32584:5991-6010 | MS.gene066528:intergenic | 45.0% | |
CACCTATGATCACCAAAACC+AGG | - | 32584:6787-6806 | MS.gene066528:intergenic | 45.0% | |
CCAAACACGCCTTATACACT+TGG | + | 32584:6028-6047 | MS.gene066528:CDS | 45.0% | |
CCAAGTGTATAAGGCGTGTT+TGG | - | 32584:6031-6050 | MS.gene066528:intergenic | 45.0% | |
CCCACAAAATGAGTCACCAA+TGG | - | 32584:6811-6830 | MS.gene066528:intergenic | 45.0% | |
GGAAGGTTAGAGATGAAGCT+GGG | + | 32584:6572-6591 | MS.gene066528:CDS | 45.0% | |
GGGCTAAGCTTCCTTTGATT+AGG | + | 32584:6302-6321 | MS.gene066528:CDS | 45.0% | |
TGATCCTTATAACGCTCCCA+CGG | - | 32584:6412-6431 | MS.gene066528:intergenic | 45.0% | |
TGGTCCCAAAATCTCCGATT+GGG | + | 32584:6048-6067 | MS.gene066528:CDS | 45.0% | |
TTGGTCCCAAAATCTCCGAT+TGG | + | 32584:6047-6066 | MS.gene066528:CDS | 45.0% | |
TTGTGGGGTGTAAACCTTGT+GGG | + | 32584:6824-6843 | MS.gene066528:CDS | 45.0% | |
TTTGTGGGGTGTAAACCTTG+TGG | + | 32584:6823-6842 | MS.gene066528:CDS | 45.0% | |
! | GCATGGTTATTGGGGGATTT+TGG | + | 32584:6726-6745 | MS.gene066528:CDS | 45.0% |
! | TTGGTGATTACCCTGTTGAG+AGG | + | 32584:6851-6870 | MS.gene066528:CDS | 45.0% |
!! | ATCTCGTTGAGGTCTTGTTC+TGG | - | 32584:5848-5867 | MS.gene066528:intergenic | 45.0% |
!! | GCCATTGGTGACTCATTTTG+TGG | + | 32584:6807-6826 | MS.gene066528:CDS | 45.0% |
!! | TTCTGGAGTTCCGAATTTGC+CGG | - | 32584:5831-5850 | MS.gene066528:intergenic | 45.0% |
!!! | CTGGTTTTGGTGATCATAGG+TGG | + | 32584:6785-6804 | MS.gene066528:CDS | 45.0% |
AATTCTTCGAGAACGCGGTG+AGG | - | 32584:5908-5927 | MS.gene066528:intergenic | 50.0% | |
ACCTTCCCTTTAGGTCCCAT+TGG | - | 32584:6559-6578 | MS.gene066528:intergenic | 50.0% | |
ATATGGCTTTCGAGGTTCCG+TGG | + | 32584:6392-6411 | MS.gene066528:CDS | 50.0% | |
CACGTGAGTAGAGCTGTTGA+CGG | - | 32584:5871-5890 | MS.gene066528:intergenic | 50.0% | |
CTTGATGCTTGGGCTCCAAT+GGG | + | 32584:6541-6560 | MS.gene066528:CDS | 50.0% | |
GGGAAGGTTAGAGATGAAGC+TGG | + | 32584:6571-6590 | MS.gene066528:CDS | 50.0% | |
GGGATGAACAACGTTCATCG+TGG | + | 32584:6068-6087 | MS.gene066528:CDS | 50.0% | |
TATGGCTTTCGAGGTTCCGT+GGG | + | 32584:6393-6412 | MS.gene066528:CDS | 50.0% | |
TCCAATGGGACCTAAAGGGA+AGG | + | 32584:6555-6574 | MS.gene066528:CDS | 50.0% | |
TCTTGATGCTTGGGCTCCAA+TGG | + | 32584:6540-6559 | MS.gene066528:CDS | 50.0% | |
TGGTGATCATAGGTGGCCAT+TGG | + | 32584:6792-6811 | MS.gene066528:CDS | 50.0% | |
AACAGCTCTACTCACGTGGC+CGG | + | 32584:5873-5892 | MS.gene066528:CDS | 55.0% | |
ATCGTCCTCCGTGGCACTAT+CGG | + | 32584:5803-5822 | MS.gene066528:CDS | 55.0% | |
CGTCAACAGCTCTACTCACG+TGG | + | 32584:5869-5888 | MS.gene066528:CDS | 55.0% | |
GCAACTGGGAGGGAACAATG+GGG | + | 32584:6670-6689 | MS.gene066528:CDS | 55.0% | |
GGCAACTGGGAGGGAACAAT+GGG | + | 32584:6669-6688 | MS.gene066528:CDS | 55.0% | |
GGGCTCCAATGGGACCTAAA+GGG | + | 32584:6551-6570 | MS.gene066528:CDS | 55.0% | |
GGTGAGGAAGAGACAGAGGA+AGG | - | 32584:5780-5799 | MS.gene066528:intergenic | 55.0% | |
TGACGGTGAGGAAGAGACAG+AGG | - | 32584:5784-5803 | MS.gene066528:intergenic | 55.0% | |
TGGCAACTGGGAGGGAACAA+TGG | + | 32584:6668-6687 | MS.gene066528:CDS | 55.0% | |
TGGGCTCCAATGGGACCTAA+AGG | + | 32584:6550-6569 | MS.gene066528:CDS | 55.0% | |
! | GCTGTTGACGGATCTCGTTG+AGG | - | 32584:5859-5878 | MS.gene066528:intergenic | 55.0% |
!! | ACTATCGGCGCCGGCAAATT+CGG | + | 32584:5818-5837 | MS.gene066528:CDS | 55.0% |
!! | GGTTCCGTGGGAGCGTTATA+AGG | + | 32584:6405-6424 | MS.gene066528:CDS | 55.0% |
ACTGGGAGGGAACAATGGGG+TGG | + | 32584:6673-6692 | MS.gene066528:CDS | 60.0% | |
AGTGCCACGGAGGACGATGA+CGG | - | 32584:5801-5820 | MS.gene066528:intergenic | 60.0% | |
CTGGGAGGGAACAATGGGGT+GGG | + | 32584:6674-6693 | MS.gene066528:CDS | 60.0% | |
GGAATGCGCGCTGCATCTGA+CGG | - | 32584:5742-5761 | MS.gene066528:intergenic | 60.0% | |
!! | AGAGGAAGGTGAGAGTGCCG+CGG | - | 32584:5766-5785 | MS.gene066528:intergenic | 60.0% |
CGCGCTGCATCTGACGGAGA+CGG | - | 32584:5736-5755 | MS.gene066528:intergenic | 65.0% | |
CTCACCGTCATCGTCCTCCG+TGG | + | 32584:5794-5813 | MS.gene066528:CDS | 65.0% | |
! | CACGGAGGACGATGACGGTG+AGG | - | 32584:5796-5815 | MS.gene066528:intergenic | 65.0% |
ATGCAGCGCGCATTCCGCCG+CGG | + | 32584:5746-5765 | MS.gene066528:CDS | 70.0% | |
CTCCGTGGCACTATCGGCGC+CGG | + | 32584:5809-5828 | MS.gene066528:CDS | 70.0% | |
!! | GGAAGGTGAGAGTGCCGCGG+CGG | - | 32584:5763-5782 | MS.gene066528:intergenic | 70.0% |
!! | TGCCGGCGCCGATAGTGCCA+CGG | - | 32584:5814-5833 | MS.gene066528:intergenic | 70.0% |
CGCGGTGAGGCTCAACGCGC+CGG | - | 32584:5895-5914 | MS.gene066528:intergenic | 75.0% | |
!! | CGGCGCCGATAGTGCCACGG+AGG | - | 32584:5811-5830 | MS.gene066528:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
32584 | gene | 5707 | 7071 | 5707 | ID=MS.gene066528 |
32584 | mRNA | 5707 | 7071 | 5707 | ID=MS.gene066528.t1;Parent=MS.gene066528 |
32584 | exon | 5707 | 7071 | 5707 | ID=MS.gene066528.t1.exon1;Parent=MS.gene066528.t1 |
32584 | CDS | 5707 | 7071 | 5707 | ID=cds.MS.gene066528.t1;Parent=MS.gene066528.t1 |
Gene Sequence |
Protein sequence |