Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06656.t1 | XP_003602305.1 | 99.3 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 1.20E-254 | 888.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06656.t1 | Q6N075 | 36.6 | 429 | 249 | 10 | 6 | 426 | 6 | 419 | 1.3e-63 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06656.t1 | G7J858 | 99.3 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 8.6e-255 | 888.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052289 | MS.gene06656 | 0.823848 | 1.11E-53 | -1.69E-46 |
| MS.gene057195 | MS.gene06656 | 0.999174 | 4.21E-294 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06656.t1 | MTR_3g092030 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| MS.gene06656.t1 | MTR_3g092030 | 99.263 | 407 | 3 | 0 | 1 | 407 | 1 | 407 | 0.0 | 819 |
| MS.gene06656.t1 | MTR_3g092030 | 99.401 | 334 | 2 | 0 | 1 | 334 | 1 | 334 | 0.0 | 668 |
| MS.gene06656.t1 | MTR_5g016080 | 27.078 | 373 | 240 | 7 | 32 | 397 | 47 | 394 | 2.06e-32 | 128 |
| MS.gene06656.t1 | MTR_5g016080 | 26.629 | 353 | 227 | 7 | 32 | 377 | 47 | 374 | 7.04e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06656.t1 | AT4G27720 | 85.000 | 460 | 68 | 1 | 1 | 459 | 1 | 460 | 0.0 | 818 |
| MS.gene06656.t1 | AT3G49310 | 81.739 | 460 | 83 | 1 | 1 | 459 | 1 | 460 | 0.0 | 793 |
| MS.gene06656.t1 | AT1G64650 | 81.345 | 461 | 83 | 2 | 1 | 458 | 1 | 461 | 0.0 | 790 |
| MS.gene06656.t1 | AT1G64650 | 81.068 | 412 | 75 | 2 | 50 | 458 | 9 | 420 | 0.0 | 704 |
| MS.gene06656.t1 | AT2G23093 | 25.517 | 435 | 273 | 13 | 30 | 446 | 46 | 447 | 4.02e-21 | 95.9 |
| MS.gene06656.t1 | AT2G23093 | 25.250 | 400 | 248 | 13 | 65 | 446 | 14 | 380 | 3.71e-19 | 89.4 |
Find 99 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCGCAGCACCCCTAAAT+TGG | 0.113644 | 3.3:+76841598 | None:intergenic |
| CGCCGGGTGCATTCAGCTTT+TGG | 0.118395 | 3.3:-76840880 | MS.gene06656:CDS |
| CAACTCTTCATTGCTGGATT+TGG | 0.156725 | 3.3:-76843188 | MS.gene06656:CDS |
| TTCTCGAAGGCTATATTTCT+TGG | 0.216269 | 3.3:-76841801 | MS.gene06656:CDS |
| AGAGCTTGCTTGCCCAATTT+AGG | 0.224575 | 3.3:-76841611 | MS.gene06656:CDS |
| AACTCTTCATTGCTGGATTT+GGG | 0.263781 | 3.3:-76843187 | MS.gene06656:CDS |
| CTTGATGTTGGGCCGTATCT+TGG | 0.280247 | 3.3:-76842945 | MS.gene06656:CDS |
| AAAGTTGTGTTGGCATATTC+TGG | 0.280683 | 3.3:-76840842 | MS.gene06656:CDS |
| TCCAAACAGCCCAGAAAATA+TGG | 0.295391 | 3.3:+76841764 | None:intergenic |
| GAGCTTGCTTGCCCAATTTA+GGG | 0.300525 | 3.3:-76841610 | MS.gene06656:CDS |
| TTCCCTATCACTGTTATGTT+TGG | 0.303539 | 3.3:-76840367 | MS.gene06656:CDS |
| GCTGCGGTGGCCATTGCTTC+TGG | 0.308302 | 3.3:-76841585 | MS.gene06656:intron |
| CTATACAGTACGTATGGATA+TGG | 0.330750 | 3.3:-76843227 | MS.gene06656:CDS |
| CCACCACCTGTTGCTTTAGT+AGG | 0.348043 | 3.3:+76840912 | None:intergenic |
| TTTGGGTCTTCGATGTTATT+CGG | 0.354101 | 3.3:-76843170 | MS.gene06656:CDS |
| ATGCCAAACATAACAGTGAT+AGG | 0.360971 | 3.3:+76840364 | None:intergenic |
| CTTGTTGATACATTGGCTCT+TGG | 0.361460 | 3.3:-76841735 | MS.gene06656:CDS |
| ATCGGACAACTCTTCATTGC+TGG | 0.362820 | 3.3:-76843194 | MS.gene06656:CDS |
| AAGGCTATATTTCTTGGAAA+TGG | 0.366820 | 3.3:-76841795 | MS.gene06656:CDS |
| CTCGCTTGCATCTAAGTTGA+TGG | 0.381655 | 3.3:-76841132 | MS.gene06656:CDS |
| TTGAGATCTCATCTTCATAA+TGG | 0.384178 | 3.3:+76840815 | None:intergenic |
| CTCATTTATTCTCTCATGAT+GGG | 0.397970 | 3.3:-76844018 | MS.gene06656:intron |
| TCTCATTTATTCTCTCATGA+TGG | 0.399753 | 3.3:-76844019 | MS.gene06656:CDS |
| AAAGTTCATGATGGTGCTCC+TGG | 0.400456 | 3.3:+76840776 | None:intergenic |
| AAGTCACACAAGCTCTCTTC+CGG | 0.400505 | 3.3:+76843023 | None:intergenic |
| CACCGCAGCACCCCTAAATT+GGG | 0.400707 | 3.3:+76841599 | None:intergenic |
| GCCATACAGTCTCTCTTTGA+AGG | 0.407686 | 3.3:-76841266 | MS.gene06656:CDS |
| ATTCATGTTATCTTCAATGT+TGG | 0.410052 | 3.3:-76841159 | MS.gene06656:CDS |
| TGTATACCTTTGTGTTCCTA+TGG | 0.414069 | 3.3:-76841238 | MS.gene06656:CDS |
| ATGTTATTCGGAACAATTGT+GGG | 0.415436 | 3.3:-76843158 | MS.gene06656:CDS |
| TTGTTCTTCTACCTTGTCTT+CGG | 0.421408 | 3.3:-76844141 | MS.gene06656:CDS |
| TTCATGTTATCTTCAATGTT+GGG | 0.421818 | 3.3:-76841158 | MS.gene06656:CDS |
| GCAGTTCCTACTAAAGCAAC+AGG | 0.424570 | 3.3:-76840918 | MS.gene06656:CDS |
| TTAATCAATTACAGATTCAA+TGG | 0.425661 | 3.3:+76839716 | None:intergenic |
| CATATCCATACGTACTGTAT+AGG | 0.434125 | 3.3:+76843228 | None:intergenic |
| TGAAAACAGAAACAGAAGAT+TGG | 0.434785 | 3.3:-76839769 | MS.gene06656:intron |
| GAGAAGATAATTGTTCTTGA+AGG | 0.443920 | 3.3:+76844038 | None:intergenic |
| TCTACATGGACAGAAAACTA+TGG | 0.449195 | 3.3:-76841651 | MS.gene06656:CDS |
| AAACCTGCAGCAGCGTCAAA+GGG | 0.457365 | 3.3:+76841702 | None:intergenic |
| ATGGTGCTCCTGGCTTCCTC+AGG | 0.461583 | 3.3:+76840786 | None:intergenic |
| AGTACGTATGGATATGGAAA+AGG | 0.464152 | 3.3:-76843221 | MS.gene06656:CDS |
| GTATGGCTATAGCTGGTGAT+TGG | 0.466459 | 3.3:-76843274 | MS.gene06656:intron |
| CTGTATAGGTAGTAAACATA+TGG | 0.466801 | 3.3:+76843242 | None:intergenic |
| TCATCATTTGGGCTTAATGC+AGG | 0.467424 | 3.3:+76841212 | None:intergenic |
| GTACGTATGGATATGGAAAA+GGG | 0.469222 | 3.3:-76843220 | MS.gene06656:CDS |
| GGTGATGCAGCTTGCAATGT+AGG | 0.472241 | 3.3:+76842991 | None:intergenic |
| TTGATGTTGGGCCGTATCTT+GGG | 0.472991 | 3.3:-76842944 | MS.gene06656:CDS |
| TTCTTCTACCTTGTCTTCGG+TGG | 0.475762 | 3.3:-76844138 | MS.gene06656:CDS |
| GCTAGTTGCTGAGCATTTCA+AGG | 0.477810 | 3.3:-76842879 | MS.gene06656:intron |
| AAAACCTGCAGCAGCGTCAA+AGG | 0.480550 | 3.3:+76841701 | None:intergenic |
| CAATACAGAGTCTTGATGTT+GGG | 0.480967 | 3.3:-76842956 | MS.gene06656:CDS |
| GGTGGTGGTCTCTCATTCGC+CGG | 0.485040 | 3.3:-76840897 | MS.gene06656:CDS |
| CCAATTTAGGGGTGCTGCGG+TGG | 0.489380 | 3.3:-76841598 | MS.gene06656:CDS |
| ATAGCATACAGTGGTAAGAA+TGG | 0.492139 | 3.3:+76841037 | None:intergenic |
| AATACATTCCTGAGGAAGCC+AGG | 0.496275 | 3.3:-76840794 | MS.gene06656:CDS |
| TAGCATACAGTGGTAAGAAT+GGG | 0.504293 | 3.3:+76841038 | None:intergenic |
| AAGGCGACTGCTCGTGATTG+CGG | 0.515226 | 3.3:-76840305 | MS.gene06656:CDS |
| ACCTTCAAAGAGAGACTGTA+TGG | 0.515882 | 3.3:+76841265 | None:intergenic |
| GTGGTGGTCTCTCATTCGCC+GGG | 0.524709 | 3.3:-76840896 | MS.gene06656:CDS |
| TCAATACAGAGTCTTGATGT+TGG | 0.527647 | 3.3:-76842957 | MS.gene06656:CDS |
| AAATGTCCTTGTTGATACAT+TGG | 0.532054 | 3.3:-76841742 | MS.gene06656:CDS |
| TACATTGGCTCTTGGACCAG+TGG | 0.533547 | 3.3:-76841727 | MS.gene06656:CDS |
| ATAGCTGGTGATTGGTTACA+AGG | 0.536193 | 3.3:-76843266 | MS.gene06656:intron |
| ACCCAAAAGCTGAATGCACC+CGG | 0.540450 | 3.3:+76840878 | None:intergenic |
| AACAGAAGATTGGCAACTCA+AGG | 0.548096 | 3.3:-76839759 | MS.gene06656:CDS |
| CCTACTAAAGCAACAGGTGG+TGG | 0.548441 | 3.3:-76840912 | MS.gene06656:CDS |
| TGGCAATGCCACCCAAGATA+CGG | 0.550294 | 3.3:+76842933 | None:intergenic |
| TACTACCTATACAGTACGTA+TGG | 0.551044 | 3.3:-76843233 | MS.gene06656:CDS |
| AGATTGGCAACTCAAGGAAA+GGG | 0.555844 | 3.3:-76839753 | MS.gene06656:CDS |
| GGATATGGAAAAGGGGAGAT+CGG | 0.557120 | 3.3:-76843212 | MS.gene06656:CDS |
| GGCTTAATGCAGGAGTCCAT+AGG | 0.558342 | 3.3:+76841222 | None:intergenic |
| AAGATTGGCAACTCAAGGAA+AGG | 0.560058 | 3.3:-76839754 | MS.gene06656:CDS |
| CAGATTCAATGGCTCTGACT+CGG | 0.562995 | 3.3:+76839727 | None:intergenic |
| TGATCGTGATATTATCTACA+TGG | 0.566672 | 3.3:-76841665 | MS.gene06656:CDS |
| GATCTCATCTTCATAATGGA+TGG | 0.570928 | 3.3:+76840819 | None:intergenic |
| TGCCAAACATAACAGTGATA+GGG | 0.571327 | 3.3:+76840365 | None:intergenic |
| GTAAGATACTAGCCATGAAG+AGG | 0.572565 | 3.3:+76840329 | None:intergenic |
| TGCCGAAAATAGAAGTGAAG+TGG | 0.574265 | 3.3:+76842913 | None:intergenic |
| GATGTTATTCGGAACAATTG+TGG | 0.575416 | 3.3:-76843159 | MS.gene06656:CDS |
| CGGCTAATCCACCGAAGACA+AGG | 0.577466 | 3.3:+76844130 | None:intergenic |
| AACATCAAGACTCTGTATTG+AGG | 0.584283 | 3.3:+76842959 | None:intergenic |
| AGCTTGCTTGCCCAATTTAG+GGG | 0.587066 | 3.3:-76841609 | MS.gene06656:CDS |
| ACCTGCAGCAGCGTCAAAGG+GGG | 0.590199 | 3.3:+76841704 | None:intergenic |
| AAGAACTATACCAGAAGCAA+TGG | 0.596618 | 3.3:+76841575 | None:intergenic |
| TCTGTATTGAGGAGAATGCT+TGG | 0.601257 | 3.3:+76842970 | None:intergenic |
| GCTATCATTAACATTCTCGA+AGG | 0.610234 | 3.3:-76841814 | MS.gene06656:CDS |
| AGAGGGGCTTTGATCAGCAA+TGG | 0.613910 | 3.3:-76841836 | MS.gene06656:CDS |
| TGCCCAATTTAGGGGTGCTG+CGG | 0.615185 | 3.3:-76841601 | MS.gene06656:CDS |
| AACCTGCAGCAGCGTCAAAG+GGG | 0.643247 | 3.3:+76841703 | None:intergenic |
| GGCTCGTTCATCATTCCGTG+TGG | 0.650417 | 3.3:-76841111 | MS.gene06656:CDS |
| TACGTATGGATATGGAAAAG+GGG | 0.653213 | 3.3:-76843219 | MS.gene06656:CDS |
| CAAGAGCCAATGTATCAACA+AGG | 0.662983 | 3.3:+76841736 | None:intergenic |
| ATGTTGGGCCGTATCTTGGG+TGG | 0.669526 | 3.3:-76842941 | MS.gene06656:CDS |
| TCATGGCTAGTATCTTACAA+AGG | 0.673331 | 3.3:-76840324 | MS.gene06656:CDS |
| CTCGAGAACAGCAACAACAG+CGG | 0.691907 | 3.3:+76844110 | None:intergenic |
| GAGATCTCAATACATTCCTG+AGG | 0.692563 | 3.3:-76840802 | MS.gene06656:CDS |
| GTTCCTACTAAAGCAACAGG+TGG | 0.707303 | 3.3:-76840915 | MS.gene06656:CDS |
| AGGAGTCCATAGGAACACAA+AGG | 0.732126 | 3.3:+76841232 | None:intergenic |
| TCTGCATGTAGCTCTCCACA+CGG | 0.735568 | 3.3:+76841096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGATTAACATATTTAA+AGG | + | chr3.3:76841128-76841147 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATATGAAAAT+GGG | + | chr3.3:76844046-76844065 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTTATATGAAAA+TGG | + | chr3.3:76844047-76844066 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAAATTGAATT+TGG | - | chr3.3:76840053-76840072 | MS.gene06656:intron | 10.0% |
| !! | AAATTTAGTAACTATTAACT+AGG | - | chr3.3:76841423-76841442 | MS.gene06656:intron | 15.0% |
| !! | AATATGTTAATCATATATGA+AGG | - | chr3.3:76841131-76841150 | MS.gene06656:CDS | 15.0% |
| !! | ACTATTATATAAGACATTTA+CGG | + | chr3.3:76841157-76841176 | None:intergenic | 15.0% |
| !! | ATCAAATCAACTATATTTAA+AGG | + | chr3.3:76840417-76840436 | None:intergenic | 15.0% |
| !! | TAAAAAATGATAACAGAATA+AGG | + | chr3.3:76842486-76842505 | None:intergenic | 15.0% |
| !! | TATTCAAATTTGAATAATGT+TGG | - | chr3.3:76840342-76840361 | MS.gene06656:CDS | 15.0% |
| !!! | TTGTTTATTTTTTTATGTAC+AGG | - | chr3.3:76843473-76843492 | MS.gene06656:intron | 15.0% |
| !! | AAAACAAAAAAGAAAGTTCT+TGG | - | chr3.3:76844056-76844075 | MS.gene06656:CDS | 20.0% |
| !! | AAATTTGAATAATGTTGGAT+GGG | - | chr3.3:76840347-76840366 | MS.gene06656:CDS | 20.0% |
| !! | AAGAAATAATAAACAGAAGA+TGG | + | chr3.3:76839973-76839992 | None:intergenic | 20.0% |
| !! | AAGTACAAAATGTAAAATGA+AGG | + | chr3.3:76841983-76842002 | None:intergenic | 20.0% |
| !! | AATTAGTGCAATATAAAAGT+TGG | + | chr3.3:76843264-76843283 | None:intergenic | 20.0% |
| !! | ACTTCTTAATATGAAAATCA+GGG | - | chr3.3:76840824-76840843 | MS.gene06656:CDS | 20.0% |
| !! | ATTACTATGAATTTGAACTT+TGG | - | chr3.3:76842356-76842375 | MS.gene06656:intron | 20.0% |
| !! | GTTTGTAAAGAAAATGTATT+TGG | + | chr3.3:76844016-76844035 | None:intergenic | 20.0% |
| !! | TATGATAAATTTATAAACCC+CGG | + | chr3.3:76841827-76841846 | None:intergenic | 20.0% |
| !! | TTATGTAAATATCAACTATG+TGG | - | chr3.3:76841467-76841486 | MS.gene06656:intron | 20.0% |
| !! | TTCATTTAACGAAACAATTA+AGG | - | chr3.3:76841611-76841630 | MS.gene06656:CDS | 20.0% |
| !!! | ACAACTACAAATTTTGAAAA+TGG | - | chr3.3:76841358-76841377 | MS.gene06656:intron | 20.0% |
| !!! | CTTTATTATCAAGTTTTATC+TGG | - | chr3.3:76841049-76841068 | MS.gene06656:CDS | 20.0% |
| !!! | TTAGTTTTAGTGATCTTAAT+AGG | - | chr3.3:76840564-76840583 | MS.gene06656:intron | 20.0% |
| !!! | TTTTATGATTTTCTTAGCTT+TGG | - | chr3.3:76840144-76840163 | MS.gene06656:intron | 20.0% |
| ! | AACAATGACAAAACTATCTA+AGG | + | chr3.3:76842323-76842342 | None:intergenic | 25.0% |
| ! | ATGTTGCAAAAATAAAACCA+TGG | + | chr3.3:76842694-76842713 | None:intergenic | 25.0% |
| ! | ATTCATGTTATCTTCAATGT+TGG | - | chr3.3:76842712-76842731 | MS.gene06656:intron | 25.0% |
| ! | CAAATTTGAATAATGTTGGA+TGG | - | chr3.3:76840346-76840365 | MS.gene06656:CDS | 25.0% |
| ! | CTTCTTAATATGAAAATCAG+GGG | - | chr3.3:76840825-76840844 | MS.gene06656:CDS | 25.0% |
| ! | GACTTCTTAATATGAAAATC+AGG | - | chr3.3:76840823-76840842 | MS.gene06656:CDS | 25.0% |
| ! | TAAGGGTAAAAATTGTATTG+TGG | + | chr3.3:76841919-76841938 | None:intergenic | 25.0% |
| ! | TCCCGGAAAAAATAAAATAA+TGG | + | chr3.3:76842425-76842444 | None:intergenic | 25.0% |
| ! | TGAAAACGATGTAATTGAAA+TGG | - | chr3.3:76840078-76840097 | MS.gene06656:intron | 25.0% |
| ! | TGTTGCAAAAATAAAACCAT+GGG | + | chr3.3:76842693-76842712 | None:intergenic | 25.0% |
| ! | TTCATGTTATCTTCAATGTT+GGG | - | chr3.3:76842713-76842732 | MS.gene06656:intron | 25.0% |
| ! | TTGCAAAAAGCAAAAGATAT+AGG | - | chr3.3:76843370-76843389 | MS.gene06656:intron | 25.0% |
| !! | ATAATTTGACTTTGTTACTG+TGG | - | chr3.3:76842919-76842938 | MS.gene06656:CDS | 25.0% |
| !! | ATTTTACAATATCTTCCAAG+TGG | - | chr3.3:76841871-76841890 | MS.gene06656:intron | 25.0% |
| !! | TGGTTTTCATATCCAATTTA+GGG | - | chr3.3:76841689-76841708 | MS.gene06656:CDS | 25.0% |
| !! | TTTTGTCATTGTTTATACAG+TGG | - | chr3.3:76842330-76842349 | MS.gene06656:intron | 25.0% |
| !!! | ATAGTAGTGATGTGTTTTTT+TGG | - | chr3.3:76840176-76840195 | MS.gene06656:intron | 25.0% |
| !!! | ATATCTTCATTGCTTGTTTT+TGG | - | chr3.3:76841669-76841688 | MS.gene06656:CDS | 25.0% |
| !!! | GCCATTATTTTATTTTTTCC+GGG | - | chr3.3:76842421-76842440 | MS.gene06656:intron | 25.0% |
| !!! | GGCCATTATTTTATTTTTTC+CGG | - | chr3.3:76842420-76842439 | MS.gene06656:intron | 25.0% |
| !!! | TAATAGGTTTCGTTTTTGTA+TGG | - | chr3.3:76840580-76840599 | MS.gene06656:intron | 25.0% |
| !!! | TCAAAAGCATTATATCTAAG+CGG | + | chr3.3:76843183-76843202 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCATATCCAATTT+AGG | - | chr3.3:76841688-76841707 | MS.gene06656:CDS | 25.0% |
| !!! | TTTGAAAATGGTTTTAGATG+TGG | - | chr3.3:76841370-76841389 | MS.gene06656:intron | 25.0% |
| AAAATGCTACGACATATGTA+TGG | + | chr3.3:76840792-76840811 | None:intergenic | 30.0% | |
| AAAGCAGAAGAAACAACTAA+TGG | + | chr3.3:76841716-76841735 | None:intergenic | 30.0% | |
| AAATGTCCTTGTTGATACAT+TGG | - | chr3.3:76842129-76842148 | MS.gene06656:intron | 30.0% | |
| AAGAAAGGGTTTATAATTCC+AGG | + | chr3.3:76843291-76843310 | None:intergenic | 30.0% | |
| AAGGCTATATTTCTTGGAAA+TGG | - | chr3.3:76842076-76842095 | MS.gene06656:intron | 30.0% | |
| AATTCATGAACATCTGTACT+AGG | + | chr3.3:76842537-76842556 | None:intergenic | 30.0% | |
| AGATGTGGATCATTATGTTT+AGG | - | chr3.3:76841385-76841404 | MS.gene06656:intron | 30.0% | |
| ATATTGCACTAATTTGAACC+TGG | - | chr3.3:76843270-76843289 | MS.gene06656:intron | 30.0% | |
| ATGTAAATCACAGTACCAAT+GGG | + | chr3.3:76842883-76842902 | None:intergenic | 30.0% | |
| ATGTTATTCGGAACAATTGT+GGG | - | chr3.3:76840713-76840732 | MS.gene06656:intron | 30.0% | |
| CAGACATCGTATTTAAGAAA+GGG | + | chr3.3:76843305-76843324 | None:intergenic | 30.0% | |
| CTCATTTATTCTCTCATGAT+GGG | - | chr3.3:76839853-76839872 | MS.gene06656:intron | 30.0% | |
| CTGTATAGGTAGTAAACATA+TGG | + | chr3.3:76840632-76840651 | None:intergenic | 30.0% | |
| CTTTCTTAAATACGATGTCT+GGG | - | chr3.3:76843304-76843323 | MS.gene06656:intron | 30.0% | |
| GAGAAGATAATTGTTCTTGA+AGG | + | chr3.3:76839836-76839855 | None:intergenic | 30.0% | |
| GAGTAAAAATCACAACTTCA+AGG | + | chr3.3:76840204-76840223 | None:intergenic | 30.0% | |
| GTAGAATTCAACAAGATAAC+TGG | + | chr3.3:76843334-76843353 | None:intergenic | 30.0% | |
| GTTGATATGCCAGATAATAT+AGG | + | chr3.3:76843954-76843973 | None:intergenic | 30.0% | |
| GTTGCAAAAATAAAACCATG+GGG | + | chr3.3:76842692-76842711 | None:intergenic | 30.0% | |
| TACCCTTAAAATCTGACAAA+GGG | - | chr3.3:76841931-76841950 | MS.gene06656:intron | 30.0% | |
| TAGTTATTATAAGTACCACG+AGG | - | chr3.3:76841176-76841195 | MS.gene06656:CDS | 30.0% | |
| TATGATTACTTTATACACGC+AGG | - | chr3.3:76841073-76841092 | MS.gene06656:CDS | 30.0% | |
| TCTCATTTATTCTCTCATGA+TGG | - | chr3.3:76839852-76839871 | MS.gene06656:intron | 30.0% | |
| TGAAAACAGAAACAGAAGAT+TGG | - | chr3.3:76844102-76844121 | MS.gene06656:CDS | 30.0% | |
| TGATCGTGATATTATCTACA+TGG | - | chr3.3:76842206-76842225 | MS.gene06656:intron | 30.0% | |
| TTACCCTTAAAATCTGACAA+AGG | - | chr3.3:76841930-76841949 | MS.gene06656:intron | 30.0% | |
| TTGAGATCTCATCTTCATAA+TGG | + | chr3.3:76843059-76843078 | None:intergenic | 30.0% | |
| TTGCAAAAATAAAACCATGG+GGG | + | chr3.3:76842691-76842710 | None:intergenic | 30.0% | |
| ! | AAACCCTTTGTCAGATTTTA+AGG | + | chr3.3:76841937-76841956 | None:intergenic | 30.0% |
| ! | AACCCTTTGTCAGATTTTAA+GGG | + | chr3.3:76841936-76841955 | None:intergenic | 30.0% |
| ! | GATGAAAAAATAGCTTTGCT+TGG | - | chr3.3:76842581-76842600 | MS.gene06656:intron | 30.0% |
| ! | GCATGTTTATCTTGTTTAGA+GGG | + | chr3.3:76841851-76841870 | None:intergenic | 30.0% |
| ! | TAGATTGTTTAAGATCAAGC+TGG | + | chr3.3:76843240-76843259 | None:intergenic | 30.0% |
| ! | TGCATGTTTATCTTGTTTAG+AGG | + | chr3.3:76841852-76841871 | None:intergenic | 30.0% |
| !! | AATAAGTTTTGATCCCATTG+CGG | + | chr3.3:76843645-76843664 | None:intergenic | 30.0% |
| !! | TGTACTTTTGAAAGTTGTGT+TGG | - | chr3.3:76843019-76843038 | MS.gene06656:CDS | 30.0% |
| !! | TTCCAAAAGATGTTGATTTC+CGG | - | chr3.3:76841805-76841824 | MS.gene06656:CDS | 30.0% |
| !!! | CTTTTGCTTTTTGCAAGAAA+GGG | + | chr3.3:76843366-76843385 | None:intergenic | 30.0% |
| !!! | TCTTTTGCTTTTTGCAAGAA+AGG | + | chr3.3:76843367-76843386 | None:intergenic | 30.0% |
| !!! | TTTTGCTTTTTGCAAGAAAG+GGG | + | chr3.3:76843365-76843384 | None:intergenic | 30.0% |
| AAATGAAGGAATCAAGACGA+AGG | + | chr3.3:76841969-76841988 | None:intergenic | 35.0% | |
| AACATCAAGACTCTGTATTG+AGG | + | chr3.3:76840915-76840934 | None:intergenic | 35.0% | |
| AACTCTTCATTGCTGGATTT+GGG | - | chr3.3:76840684-76840703 | MS.gene06656:intron | 35.0% | |
| AAGAACTATACCAGAAGCAA+TGG | + | chr3.3:76842299-76842318 | None:intergenic | 35.0% | |
| AAGCATTATATCTAAGCGGT+AGG | + | chr3.3:76843179-76843198 | None:intergenic | 35.0% | |
| AATGCGGAAAAAGTTCATGA+TGG | + | chr3.3:76843107-76843126 | None:intergenic | 35.0% | |
| ACAAACACACTAGTTGCTAT+CGG | - | chr3.3:76841554-76841573 | MS.gene06656:intron | 35.0% | |
| ACACACACAAAAATGTTCAG+AGG | + | chr3.3:76843130-76843149 | None:intergenic | 35.0% | |
| ACTAAATTTATGCAACACGC+AGG | + | chr3.3:76841412-76841431 | None:intergenic | 35.0% | |
| AGGCAGGATATATAACACAA+GGG | + | chr3.3:76843773-76843792 | None:intergenic | 35.0% | |
| AGTACGTATGGATATGGAAA+AGG | - | chr3.3:76840650-76840669 | MS.gene06656:intron | 35.0% | |
| ATAGCATACAGTGGTAAGAA+TGG | + | chr3.3:76842837-76842856 | None:intergenic | 35.0% | |
| ATATCAACTATGTGGTGTAG+TGG | - | chr3.3:76841475-76841494 | MS.gene06656:intron | 35.0% | |
| ATATGCCAGATAATATAGGC+AGG | + | chr3.3:76843950-76843969 | None:intergenic | 35.0% | |
| ATATGCCCAATTAACCAAAG+TGG | + | chr3.3:76843862-76843881 | None:intergenic | 35.0% | |
| ATGCCAAACATAACAGTGAT+AGG | + | chr3.3:76843510-76843529 | None:intergenic | 35.0% | |
| ATGTTGAATTTGTACCGCAA+TGG | - | chr3.3:76843628-76843647 | MS.gene06656:intron | 35.0% | |
| ATTGCCCACTTTGGTTAATT+GGG | - | chr3.3:76843854-76843873 | MS.gene06656:intron | 35.0% | |
| ATTGGAAGAATAGCATACAG+TGG | + | chr3.3:76842846-76842865 | None:intergenic | 35.0% | |
| ATTTCAACATACATCACTCC+CGG | + | chr3.3:76842442-76842461 | None:intergenic | 35.0% | |
| CAAAAATGTTCAGAGGAATG+CGG | + | chr3.3:76843123-76843142 | None:intergenic | 35.0% | |
| CAATACAGAGTCTTGATGTT+GGG | - | chr3.3:76840915-76840934 | MS.gene06656:CDS | 35.0% | |
| CATATCCATACGTACTGTAT+AGG | + | chr3.3:76840646-76840665 | None:intergenic | 35.0% | |
| CATTAATCTACCTAACGAGT+GGG | - | chr3.3:76842395-76842414 | MS.gene06656:intron | 35.0% | |
| CCAGACATCGTATTTAAGAA+AGG | + | chr3.3:76843306-76843325 | None:intergenic | 35.0% | |
| CCTTTCTTAAATACGATGTC+TGG | - | chr3.3:76843303-76843322 | MS.gene06656:intron | 35.0% | |
| CTATACAGTACGTATGGATA+TGG | - | chr3.3:76840644-76840663 | MS.gene06656:intron | 35.0% | |
| GATCTACCAAAAATAGCTTG+AGG | + | chr3.3:76843793-76843812 | None:intergenic | 35.0% | |
| GATGTAAATCACAGTACCAA+TGG | + | chr3.3:76842884-76842903 | None:intergenic | 35.0% | |
| GATGTTATTCGGAACAATTG+TGG | - | chr3.3:76840712-76840731 | MS.gene06656:intron | 35.0% | |
| GCCTTTAAGTAAAAGTCCAT+GGG | - | chr3.3:76843899-76843918 | MS.gene06656:intron | 35.0% | |
| GCTATCATTAACATTCTCGA+AGG | - | chr3.3:76842057-76842076 | MS.gene06656:intron | 35.0% | |
| GTACGTATGGATATGGAAAA+GGG | - | chr3.3:76840651-76840670 | MS.gene06656:intron | 35.0% | |
| GTGAGCAAAAATCACTTTGT+TGG | + | chr3.3:76841897-76841916 | None:intergenic | 35.0% | |
| TAACGAAACAATTAAGGCAG+AGG | - | chr3.3:76841617-76841636 | MS.gene06656:CDS | 35.0% | |
| TACGTATGGATATGGAAAAG+GGG | - | chr3.3:76840652-76840671 | MS.gene06656:intron | 35.0% | |
| TACTACCTATACAGTACGTA+TGG | - | chr3.3:76840638-76840657 | MS.gene06656:intron | 35.0% | |
| TAGCATACAGTGGTAAGAAT+GGG | + | chr3.3:76842836-76842855 | None:intergenic | 35.0% | |
| TATACACTACACAAAGCCAA+AGG | + | chr3.3:76843748-76843767 | None:intergenic | 35.0% | |
| TATGCCAGATAATATAGGCA+GGG | + | chr3.3:76843949-76843968 | None:intergenic | 35.0% | |
| TATGCCCAATTAACCAAAGT+GGG | + | chr3.3:76843861-76843880 | None:intergenic | 35.0% | |
| TCAATACAGAGTCTTGATGT+TGG | - | chr3.3:76840914-76840933 | MS.gene06656:CDS | 35.0% | |
| TCATGGCTAGTATCTTACAA+AGG | - | chr3.3:76843547-76843566 | MS.gene06656:intron | 35.0% | |
| TCTACATGGACAGAAAACTA+TGG | - | chr3.3:76842220-76842239 | MS.gene06656:intron | 35.0% | |
| TGCCAAACATAACAGTGATA+GGG | + | chr3.3:76843509-76843528 | None:intergenic | 35.0% | |
| TGCCTTTAAGTAAAAGTCCA+TGG | - | chr3.3:76843898-76843917 | MS.gene06656:intron | 35.0% | |
| TGTATACCTTTGTGTTCCTA+TGG | - | chr3.3:76842633-76842652 | MS.gene06656:intron | 35.0% | |
| TGTTGAATTTGTACCGCAAT+GGG | - | chr3.3:76843629-76843648 | MS.gene06656:intron | 35.0% | |
| TTAATATGAAAATCAGGGGC+CGG | - | chr3.3:76840829-76840848 | MS.gene06656:CDS | 35.0% | |
| TTATCTGGCATATCAACACA+TGG | - | chr3.3:76843957-76843976 | MS.gene06656:intron | 35.0% | |
| TTCCACATGAATCTATCAGA+GGG | - | chr3.3:76842018-76842037 | MS.gene06656:intron | 35.0% | |
| TTCCCTATCACTGTTATGTT+TGG | - | chr3.3:76843504-76843523 | MS.gene06656:intron | 35.0% | |
| TTCTCGAAGGCTATATTTCT+TGG | - | chr3.3:76842070-76842089 | MS.gene06656:intron | 35.0% | |
| TTGTTCTTCTACCTTGTCTT+CGG | - | chr3.3:76839730-76839749 | MS.gene06656:CDS | 35.0% | |
| TTTCCACATGAATCTATCAG+AGG | - | chr3.3:76842017-76842036 | MS.gene06656:intron | 35.0% | |
| TTTGGGTCTTCGATGTTATT+CGG | - | chr3.3:76840701-76840720 | MS.gene06656:intron | 35.0% | |
| ! | AAAGTTGTGTTGGCATATTC+TGG | - | chr3.3:76843029-76843048 | MS.gene06656:CDS | 35.0% |
| ! | ACAACTAATGGACCCTAAAT+TGG | + | chr3.3:76841704-76841723 | None:intergenic | 35.0% |
| ! | ACCCATGGACTTTTACTTAA+AGG | + | chr3.3:76843903-76843922 | None:intergenic | 35.0% |
| ! | CATCTAGCTTGAAACATGTT+TGG | + | chr3.3:76843834-76843853 | None:intergenic | 35.0% |
| ! | GAAGTGCTATAATTTGAAGG+TGG | - | chr3.3:76841095-76841114 | MS.gene06656:CDS | 35.0% |
| ! | GATCTCATCTTCATAATGGA+TGG | + | chr3.3:76843055-76843074 | None:intergenic | 35.0% |
| ! | TTCATCTGAAACGCAATGAA+TGG | + | chr3.3:76842567-76842586 | None:intergenic | 35.0% |
| !! | ACTTTGGAACTCTTAATGTG+TGG | - | chr3.3:76842372-76842391 | MS.gene06656:intron | 35.0% |
| !! | CAGGAAGTGCTATAATTTGA+AGG | - | chr3.3:76841092-76841111 | MS.gene06656:CDS | 35.0% |
| !! | GTCTTGTTGCCATATTTTCT+GGG | - | chr3.3:76842098-76842117 | MS.gene06656:intron | 35.0% |
| !! | TCCAAAAGATGTTGATTTCC+GGG | - | chr3.3:76841806-76841825 | MS.gene06656:CDS | 35.0% |
| !! | TGCCACTTCACTTCTATTTT+CGG | - | chr3.3:76840956-76840975 | MS.gene06656:intron | 35.0% |
| !!! | GCGTGATTTTGAAATCTGAA+TGG | - | chr3.3:76840107-76840126 | MS.gene06656:intron | 35.0% |
| AAATCACTTTGTTGGCCACT+TGG | + | chr3.3:76841889-76841908 | None:intergenic | 40.0% | |
| AACAGAAGATTGGCAACTCA+AGG | - | chr3.3:76844112-76844131 | MS.gene06656:CDS | 40.0% | |
| AAGATTGGCAACTCAAGGAA+AGG | - | chr3.3:76844117-76844136 | MS.gene06656:CDS | 40.0% | |
| AAGCAACAGATCATAGTGTG+AGG | + | chr3.3:76843608-76843627 | None:intergenic | 40.0% | |
| ACAGTTAGAGATAGAGAGAG+AGG | + | chr3.3:76843409-76843428 | None:intergenic | 40.0% | |
| ACCTTCAAAGAGAGACTGTA+TGG | + | chr3.3:76842609-76842628 | None:intergenic | 40.0% | |
| AGAAATTGCTCCTACACCTT+TGG | - | chr3.3:76843729-76843748 | MS.gene06656:intron | 40.0% | |
| AGATTGGCAACTCAAGGAAA+GGG | - | chr3.3:76844118-76844137 | MS.gene06656:CDS | 40.0% | |
| AGCAACAGATCATAGTGTGA+GGG | + | chr3.3:76843607-76843626 | None:intergenic | 40.0% | |
| AGCAGCAAAGAAAAAACCCA+TGG | + | chr3.3:76843918-76843937 | None:intergenic | 40.0% | |
| CAACTCTTCATTGCTGGATT+TGG | - | chr3.3:76840683-76840702 | MS.gene06656:intron | 40.0% | |
| CAAGAGCCAATGTATCAACA+AGG | + | chr3.3:76842138-76842157 | None:intergenic | 40.0% | |
| GAGATCTCAATACATTCCTG+AGG | - | chr3.3:76843069-76843088 | MS.gene06656:intron | 40.0% | |
| GAGGCAGGATATATAACACA+AGG | + | chr3.3:76843774-76843793 | None:intergenic | 40.0% | |
| GATTGCCCACTTTGGTTAAT+TGG | - | chr3.3:76843853-76843872 | MS.gene06656:intron | 40.0% | |
| GCATTAATCTACCTAACGAG+TGG | - | chr3.3:76842394-76842413 | MS.gene06656:intron | 40.0% | |
| GCTTTCGATGACATTGTTGT+TGG | - | chr3.3:76840497-76840516 | MS.gene06656:intron | 40.0% | |
| GTAAGATACTAGCCATGAAG+AGG | + | chr3.3:76843545-76843564 | None:intergenic | 40.0% | |
| TAAATCACAGTACCAATGGG+TGG | + | chr3.3:76842880-76842899 | None:intergenic | 40.0% | |
| TACCAAAAATAGCTTGAGGC+AGG | + | chr3.3:76843789-76843808 | None:intergenic | 40.0% | |
| TATCTTTGTCACACAGTGAC+AGG | + | chr3.3:76843679-76843698 | None:intergenic | 40.0% | |
| TCATCATTTGGGCTTAATGC+AGG | + | chr3.3:76842662-76842681 | None:intergenic | 40.0% | |
| TCCAAACAGCCCAGAAAATA+TGG | + | chr3.3:76842110-76842129 | None:intergenic | 40.0% | |
| TCCACATGAATCTATCAGAG+GGG | - | chr3.3:76842019-76842038 | MS.gene06656:intron | 40.0% | |
| TCTGTATTGAGGAGAATGCT+TGG | + | chr3.3:76840904-76840923 | None:intergenic | 40.0% | |
| TCTTAAATACGATGTCTGGG+TGG | - | chr3.3:76843307-76843326 | MS.gene06656:intron | 40.0% | |
| TGCCGAAAATAGAAGTGAAG+TGG | + | chr3.3:76840961-76840980 | None:intergenic | 40.0% | |
| ! | ATAGCTGGTGATTGGTTACA+AGG | - | chr3.3:76840605-76840624 | MS.gene06656:intron | 40.0% |
| ! | ATGTATTTGGTTCGTGTAGC+TGG | + | chr3.3:76844003-76844022 | None:intergenic | 40.0% |
| ! | CAATACAGTTTGATGGCATC+TGG | - | chr3.3:76841640-76841659 | MS.gene06656:CDS | 40.0% |
| ! | CGTTTTTGTATGGCTATAGC+TGG | - | chr3.3:76840590-76840609 | MS.gene06656:intron | 40.0% |
| ! | GCTGCAGGTTTTCTTACAAT+TGG | - | chr3.3:76842181-76842200 | MS.gene06656:intron | 40.0% |
| ! | GTGCTCAATTTTCCTCTTCA+TGG | - | chr3.3:76843530-76843549 | MS.gene06656:intron | 40.0% |
| ! | TATTTTCGGCATTTGAGTCG+TGG | - | chr3.3:76840970-76840989 | MS.gene06656:intron | 40.0% |
| ! | TTGGAATCAACCTAGTTTGC+AGG | + | chr3.3:76841791-76841810 | None:intergenic | 40.0% |
| ! | TTTTGCAAGAAAGGGGTTGT+AGG | + | chr3.3:76843358-76843377 | None:intergenic | 40.0% |
| !! | ATCCTGCCTCAAGCTATTTT+TGG | - | chr3.3:76843784-76843803 | MS.gene06656:intron | 40.0% |
| !! | CCAAAAGATGTTGATTTCCG+GGG | - | chr3.3:76841807-76841826 | MS.gene06656:CDS | 40.0% |
| !! | CTTGTTGATACATTGGCTCT+TGG | - | chr3.3:76842136-76842155 | MS.gene06656:intron | 40.0% |
| !!! | GGGTTTTTTCTTTGCTGCTA+AGG | - | chr3.3:76843919-76843938 | MS.gene06656:intron | 40.0% |
| !!! | GGTCTTGTTGCCATATTTTC+TGG | - | chr3.3:76842097-76842116 | MS.gene06656:intron | 40.0% |
| AAGTCACACAAGCTCTCTTC+CGG | + | chr3.3:76840851-76840870 | None:intergenic | 45.0% | |
| AATACATTCCTGAGGAAGCC+AGG | - | chr3.3:76843077-76843096 | MS.gene06656:intron | 45.0% | |
| AATGATGAAGAGATCCCCCA+TGG | - | chr3.3:76842674-76842693 | MS.gene06656:intron | 45.0% | |
| AGATCTCTGATACTGCAGCA+AGG | - | chr3.3:76843808-76843827 | MS.gene06656:intron | 45.0% | |
| AGCTAGATGATTGCCCACTT+TGG | - | chr3.3:76843845-76843864 | MS.gene06656:intron | 45.0% | |
| AGGAGTCCATAGGAACACAA+AGG | + | chr3.3:76842642-76842661 | None:intergenic | 45.0% | |
| AGTACCACGAGGAGAAAAGT+AGG | - | chr3.3:76841187-76841206 | MS.gene06656:CDS | 45.0% | |
| ATCGGACAACTCTTCATTGC+TGG | - | chr3.3:76840677-76840696 | MS.gene06656:intron | 45.0% | |
| CATAGTGTGAGGGTCTTACT+TGG | + | chr3.3:76843597-76843616 | None:intergenic | 45.0% | |
| CTTGCCCTGCCTATATTATC+TGG | - | chr3.3:76843942-76843961 | MS.gene06656:intron | 45.0% | |
| GCAGAGGCAATACAGTTTGA+TGG | - | chr3.3:76841633-76841652 | MS.gene06656:CDS | 45.0% | |
| GCAGTTCCTACTAAAGCAAC+AGG | - | chr3.3:76842953-76842972 | MS.gene06656:CDS | 45.0% | |
| GCCATACAGTCTCTCTTTGA+AGG | - | chr3.3:76842605-76842624 | MS.gene06656:intron | 45.0% | |
| GCTAGTTGCTGAGCATTTCA+AGG | - | chr3.3:76840992-76841011 | MS.gene06656:intron | 45.0% | |
| GGATATGGAAAAGGGGAGAT+CGG | - | chr3.3:76840659-76840678 | MS.gene06656:intron | 45.0% | |
| GGGGGATCTCTTCATCATTT+GGG | + | chr3.3:76842673-76842692 | None:intergenic | 45.0% | |
| GTATGGCTATAGCTGGTGAT+TGG | - | chr3.3:76840597-76840616 | MS.gene06656:intron | 45.0% | |
| GTTCCTACTAAAGCAACAGG+TGG | - | chr3.3:76842956-76842975 | MS.gene06656:CDS | 45.0% | |
| TCAACGTGTTCCTGCAAACT+AGG | - | chr3.3:76841778-76841797 | MS.gene06656:CDS | 45.0% | |
| TGGGGGATCTCTTCATCATT+TGG | + | chr3.3:76842674-76842693 | None:intergenic | 45.0% | |
| TTCTTCTACCTTGTCTTCGG+TGG | - | chr3.3:76839733-76839752 | MS.gene06656:CDS | 45.0% | |
| TTGATGTTGGGCCGTATCTT+GGG | - | chr3.3:76840927-76840946 | MS.gene06656:CDS | 45.0% | |
| ! | AAAGTTCATGATGGTGCTCC+TGG | + | chr3.3:76843098-76843117 | None:intergenic | 45.0% |
| ! | AGAGCTTGCTTGCCCAATTT+AGG | - | chr3.3:76842260-76842279 | MS.gene06656:intron | 45.0% |
| ! | AGCTTGCTTGCCCAATTTAG+GGG | - | chr3.3:76842262-76842281 | MS.gene06656:intron | 45.0% |
| ! | AGTCACTGAGGCATGGTTTT+TGG | - | chr3.3:76841498-76841517 | MS.gene06656:intron | 45.0% |
| ! | CCCCGGAAATCAACATCTTT+TGG | + | chr3.3:76841810-76841829 | None:intergenic | 45.0% |
| ! | CTACACAAAGCCAAAGGTGT+AGG | + | chr3.3:76843742-76843761 | None:intergenic | 45.0% |
| ! | CTCGCTTGCATCTAAGTTGA+TGG | - | chr3.3:76842739-76842758 | MS.gene06656:intron | 45.0% |
| ! | GAGCTTGCTTGCCCAATTTA+GGG | - | chr3.3:76842261-76842280 | MS.gene06656:intron | 45.0% |
| ! | GCCATATTTTCTGGGCTGTT+TGG | - | chr3.3:76842106-76842125 | MS.gene06656:intron | 45.0% |
| !! | ACAACCTACTTTTCTCCTCG+TGG | + | chr3.3:76841194-76841213 | None:intergenic | 45.0% |
| !! | CAGATTCAATGGCTCTGACT+CGG | + | chr3.3:76844147-76844166 | None:intergenic | 45.0% |
| AAAACCTGCAGCAGCGTCAA+AGG | + | chr3.3:76842173-76842192 | None:intergenic | 50.0% | |
| AAACCTGCAGCAGCGTCAAA+GGG | + | chr3.3:76842172-76842191 | None:intergenic | 50.0% | |
| AATCTACCTAACGAGTGGGC+TGG | - | chr3.3:76842399-76842418 | MS.gene06656:intron | 50.0% | |
| ACCCAAAAGCTGAATGCACC+CGG | + | chr3.3:76842996-76843015 | None:intergenic | 50.0% | |
| ATCACAGTACCAATGGGTGG+AGG | + | chr3.3:76842877-76842896 | None:intergenic | 50.0% | |
| CCTACTAAAGCAACAGGTGG+TGG | - | chr3.3:76842959-76842978 | MS.gene06656:CDS | 50.0% | |
| CTCGAGAACAGCAACAACAG+CGG | + | chr3.3:76839764-76839783 | None:intergenic | 50.0% | |
| CTTGATGTTGGGCCGTATCT+TGG | - | chr3.3:76840926-76840945 | MS.gene06656:CDS | 50.0% | |
| GCCCCTCTGATAGATTCATG+TGG | + | chr3.3:76842023-76842042 | None:intergenic | 50.0% | |
| GGCTTAATGCAGGAGTCCAT+AGG | + | chr3.3:76842652-76842671 | None:intergenic | 50.0% | |
| GGTGATGCAGCTTGCAATGT+AGG | + | chr3.3:76840883-76840902 | None:intergenic | 50.0% | |
| TATACTCTCCCTCCACCCAT+TGG | - | chr3.3:76842865-76842884 | MS.gene06656:intron | 50.0% | |
| TCACAGTACCAATGGGTGGA+GGG | + | chr3.3:76842876-76842895 | None:intergenic | 50.0% | |
| TCTGCATGTAGCTCTCCACA+CGG | + | chr3.3:76842778-76842797 | None:intergenic | 50.0% | |
| TGGCAATGCCACCCAAGATA+CGG | + | chr3.3:76840941-76840960 | None:intergenic | 50.0% | |
| ! | AGAGGGGCTTTGATCAGCAA+TGG | - | chr3.3:76842035-76842054 | MS.gene06656:intron | 50.0% |
| ! | TGGGTGGAGGGAGAGTATAT+TGG | + | chr3.3:76842864-76842883 | None:intergenic | 50.0% |
| !! | CCACCACCTGTTGCTTTAGT+AGG | + | chr3.3:76842962-76842981 | None:intergenic | 50.0% |
| !! | TACATTGGCTCTTGGACCAG+TGG | - | chr3.3:76842144-76842163 | MS.gene06656:intron | 50.0% |
| AACCTGCAGCAGCGTCAAAG+GGG | + | chr3.3:76842171-76842190 | None:intergenic | 55.0% | |
| AAGGCGACTGCTCGTGATTG+CGG | - | chr3.3:76843566-76843585 | MS.gene06656:intron | 55.0% | |
| ATGTTGGGCCGTATCTTGGG+TGG | - | chr3.3:76840930-76840949 | MS.gene06656:intron | 55.0% | |
| CACCGCAGCACCCCTAAATT+GGG | + | chr3.3:76842275-76842294 | None:intergenic | 55.0% | |
| CGGCTAATCCACCGAAGACA+AGG | + | chr3.3:76839744-76839763 | None:intergenic | 55.0% | |
| GGCTCGTTCATCATTCCGTG+TGG | - | chr3.3:76842760-76842779 | MS.gene06656:intron | 55.0% | |
| TAATGGCCAGCCCACTCGTT+AGG | + | chr3.3:76842408-76842427 | None:intergenic | 55.0% | |
| ! | GCCGGGTGCATTCAGCTTTT+GGG | - | chr3.3:76842992-76843011 | MS.gene06656:CDS | 55.0% |
| ! | GTAGTGGAGTCACTGAGGCA+TGG | - | chr3.3:76841491-76841510 | MS.gene06656:intron | 55.0% |
| ! | GTGGTGTAGTGGAGTCACTG+AGG | - | chr3.3:76841486-76841505 | MS.gene06656:intron | 55.0% |
| !! | TGCCCAATTTAGGGGTGCTG+CGG | - | chr3.3:76842270-76842289 | MS.gene06656:intron | 55.0% |
| ACCTGCAGCAGCGTCAAAGG+GGG | + | chr3.3:76842170-76842189 | None:intergenic | 60.0% | |
| ATGGTGCTCCTGGCTTCCTC+AGG | + | chr3.3:76843088-76843107 | None:intergenic | 60.0% | |
| CCACCGCAGCACCCCTAAAT+TGG | + | chr3.3:76842276-76842295 | None:intergenic | 60.0% | |
| GTGGTGGTCTCTCATTCGCC+GGG | - | chr3.3:76842975-76842994 | MS.gene06656:CDS | 60.0% | |
| ! | CGCCGGGTGCATTCAGCTTT+TGG | - | chr3.3:76842991-76843010 | MS.gene06656:CDS | 60.0% |
| ! | GGTGGTGGTCTCTCATTCGC+CGG | - | chr3.3:76842974-76842993 | MS.gene06656:CDS | 60.0% |
| !! | CCAATTTAGGGGTGCTGCGG+TGG | - | chr3.3:76842273-76842292 | MS.gene06656:intron | 60.0% |
| GCTGCGGTGGCCATTGCTTC+TGG | - | chr3.3:76842286-76842305 | MS.gene06656:intron | 65.0% | |
| GCAGCGTCAAAGGGGGCCAC+TGG | + | chr3.3:76842163-76842182 | None:intergenic | 70.0% | |
| GCCCCCTTTGACGCTGCTGC+AGG | - | chr3.3:76842166-76842185 | MS.gene06656:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76839724 | 76844169 | 76839724 | ID=MS.gene06656 |
| chr3.3 | mRNA | 76839724 | 76844169 | 76839724 | ID=MS.gene06656.t1;Parent=MS.gene06656 |
| chr3.3 | exon | 76844019 | 76844169 | 76844019 | ID=MS.gene06656.t1.exon1;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76844019 | 76844169 | 76844019 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76843140 | 76843284 | 76843140 | ID=MS.gene06656.t1.exon2;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76843140 | 76843284 | 76843140 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76842880 | 76843048 | 76842880 | ID=MS.gene06656.t1.exon3;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76842880 | 76843048 | 76842880 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76841586 | 76841856 | 76841586 | ID=MS.gene06656.t1.exon4;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76841586 | 76841856 | 76841586 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76841046 | 76841311 | 76841046 | ID=MS.gene06656.t1.exon5;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76841046 | 76841311 | 76841046 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76840731 | 76840946 | 76840731 | ID=MS.gene06656.t1.exon6;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76840731 | 76840946 | 76840731 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76840296 | 76840398 | 76840296 | ID=MS.gene06656.t1.exon7;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76840296 | 76840398 | 76840296 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| chr3.3 | exon | 76839724 | 76839782 | 76839724 | ID=MS.gene06656.t1.exon8;Parent=MS.gene06656.t1 |
| chr3.3 | CDS | 76839724 | 76839782 | 76839724 | ID=cds.MS.gene06656.t1;Parent=MS.gene06656.t1 |
| Gene Sequence |
| Protein sequence |
