Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066885.t1 | XP_013445316.1 | 96.8 | 525 | 17 | 0 | 1 | 525 | 1 | 525 | 2.60E-290 | 1007.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066885.t1 | Q9SA38 | 57.5 | 520 | 207 | 7 | 1 | 517 | 1 | 509 | 2.1e-163 | 577.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066885.t1 | A0A072TPM4 | 96.8 | 525 | 17 | 0 | 1 | 525 | 1 | 525 | 1.9e-290 | 1007.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066885 | MS.gene064542 | PPI |
| MS.gene066885 | MS.gene035805 | PPI |
| MS.gene066885 | MS.gene73119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066885.t1 | MTR_8g447340 | 96.578 | 526 | 18 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1029 |
| MS.gene066885.t1 | MTR_4g030040 | 44.727 | 512 | 271 | 5 | 11 | 521 | 8 | 508 | 3.11e-167 | 483 |
| MS.gene066885.t1 | MTR_4g030210 | 47.525 | 505 | 253 | 6 | 16 | 519 | 17 | 510 | 3.92e-167 | 483 |
| MS.gene066885.t1 | MTR_4g030040 | 45.238 | 504 | 264 | 5 | 19 | 521 | 15 | 507 | 3.08e-166 | 481 |
| MS.gene066885.t1 | MTR_8g039190 | 43.878 | 490 | 261 | 4 | 32 | 518 | 30 | 508 | 6.38e-155 | 452 |
| MS.gene066885.t1 | MTR_5g080050 | 44.980 | 498 | 263 | 4 | 32 | 525 | 28 | 518 | 1.21e-150 | 441 |
| MS.gene066885.t1 | MTR_5g082760 | 42.500 | 520 | 279 | 6 | 11 | 518 | 10 | 521 | 2.14e-145 | 428 |
| MS.gene066885.t1 | MTR_8g039070 | 38.196 | 521 | 271 | 7 | 8 | 525 | 7 | 479 | 2.19e-127 | 381 |
| MS.gene066885.t1 | MTR_2g081930 | 33.460 | 526 | 318 | 9 | 8 | 515 | 12 | 523 | 6.16e-80 | 259 |
| MS.gene066885.t1 | MTR_4g081490 | 32.208 | 385 | 235 | 5 | 151 | 521 | 75 | 447 | 9.26e-54 | 188 |
| MS.gene066885.t1 | MTR_2g081950 | 33.947 | 380 | 226 | 6 | 150 | 510 | 27 | 400 | 5.29e-51 | 180 |
| MS.gene066885.t1 | MTR_4g120720 | 32.155 | 283 | 156 | 6 | 104 | 382 | 16 | 266 | 2.20e-34 | 131 |
| MS.gene066885.t1 | MTR_4g005090 | 26.552 | 467 | 269 | 19 | 107 | 520 | 54 | 499 | 1.59e-18 | 89.0 |
| MS.gene066885.t1 | MTR_4g081480 | 31.387 | 137 | 84 | 3 | 5 | 141 | 18 | 144 | 5.27e-15 | 72.8 |
| MS.gene066885.t1 | MTR_3g116060 | 32.051 | 156 | 101 | 2 | 139 | 289 | 51 | 206 | 2.67e-13 | 73.2 |
| MS.gene066885.t1 | MTR_2g081960 | 28.369 | 141 | 87 | 3 | 5 | 145 | 14 | 140 | 3.32e-13 | 67.4 |
| MS.gene066885.t1 | MTR_2g020710 | 23.171 | 492 | 295 | 21 | 59 | 505 | 21 | 474 | 6.58e-12 | 68.2 |
| MS.gene066885.t1 | MTR_5g024740 | 24.878 | 205 | 144 | 4 | 104 | 301 | 19 | 220 | 1.81e-11 | 67.4 |
| MS.gene066885.t1 | MTR_5g019870 | 24.545 | 440 | 268 | 16 | 118 | 509 | 51 | 474 | 2.11e-11 | 66.6 |
| MS.gene066885.t1 | MTR_4g118610 | 22.793 | 487 | 310 | 18 | 57 | 505 | 19 | 477 | 2.20e-11 | 66.6 |
| MS.gene066885.t1 | MTR_1g038600 | 25.641 | 273 | 177 | 10 | 149 | 403 | 85 | 349 | 2.28e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066885.t1 | AT1G16390 | 57.500 | 520 | 207 | 7 | 1 | 517 | 1 | 509 | 0.0 | 590 |
| MS.gene066885.t1 | AT1G79360 | 53.283 | 533 | 222 | 8 | 1 | 521 | 1 | 518 | 0.0 | 575 |
| MS.gene066885.t1 | AT1G16370 | 40.417 | 527 | 292 | 9 | 1 | 519 | 1 | 513 | 7.17e-138 | 409 |
| MS.gene066885.t1 | AT1G79410 | 41.300 | 523 | 287 | 7 | 1 | 519 | 1 | 507 | 2.14e-133 | 397 |
| MS.gene066885.t1 | AT1G73220 | 35.413 | 545 | 312 | 11 | 4 | 525 | 9 | 536 | 1.43e-105 | 327 |
| MS.gene066885.t1 | AT3G20660 | 31.151 | 504 | 311 | 9 | 32 | 519 | 38 | 521 | 1.76e-74 | 245 |
| MS.gene066885.t1 | AT3G51490 | 29.534 | 193 | 126 | 4 | 104 | 289 | 19 | 208 | 2.07e-14 | 76.6 |
| MS.gene066885.t1 | AT3G51490 | 29.534 | 193 | 126 | 4 | 104 | 289 | 19 | 208 | 2.18e-14 | 76.6 |
| MS.gene066885.t1 | AT3G51490 | 30.769 | 156 | 103 | 2 | 139 | 289 | 3 | 158 | 5.58e-14 | 75.1 |
| MS.gene066885.t1 | AT3G13050 | 22.766 | 470 | 290 | 17 | 107 | 521 | 48 | 499 | 1.39e-12 | 70.5 |
| MS.gene066885.t1 | AT3G13050 | 22.766 | 470 | 290 | 17 | 107 | 521 | 48 | 499 | 1.39e-12 | 70.5 |
| MS.gene066885.t1 | AT3G13050 | 22.766 | 470 | 290 | 17 | 107 | 521 | 48 | 499 | 1.39e-12 | 70.5 |
| MS.gene066885.t1 | AT3G13050 | 22.766 | 470 | 290 | 17 | 107 | 521 | 48 | 499 | 1.39e-12 | 70.5 |
| MS.gene066885.t1 | AT1G20840 | 27.461 | 193 | 128 | 5 | 104 | 289 | 19 | 206 | 1.52e-12 | 70.9 |
| MS.gene066885.t1 | AT1G20840 | 27.461 | 193 | 128 | 5 | 104 | 289 | 19 | 206 | 1.52e-12 | 70.9 |
| MS.gene066885.t1 | AT4G04760 | 24.099 | 444 | 264 | 21 | 104 | 507 | 50 | 460 | 5.43e-12 | 68.6 |
| MS.gene066885.t1 | AT4G04750 | 22.122 | 443 | 273 | 18 | 104 | 507 | 99 | 508 | 1.01e-11 | 67.8 |
| MS.gene066885.t1 | AT4G04750 | 22.122 | 443 | 273 | 18 | 104 | 507 | 55 | 464 | 1.62e-11 | 67.0 |
| MS.gene066885.t1 | AT4G04750 | 22.122 | 443 | 273 | 18 | 104 | 507 | 55 | 464 | 1.62e-11 | 67.0 |
| MS.gene066885.t1 | AT4G04760 | 23.744 | 438 | 270 | 19 | 104 | 507 | 50 | 457 | 3.19e-11 | 66.2 |
| MS.gene066885.t1 | AT2G43330 | 24.934 | 381 | 245 | 14 | 155 | 504 | 99 | 469 | 6.46e-11 | 65.1 |
Find 110 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTGATGGATAAATTT+AGG | 0.186538 | 8.4:-54456613 | None:intergenic |
| AGAGAAGGAAAGTGTTTATT+TGG | 0.193783 | 8.4:-54455786 | None:intergenic |
| GGAATTGGAGTTGTCTATTA+TGG | 0.204957 | 8.4:+54456752 | MS.gene066885:CDS |
| GGAAATAAGTTTCTTTGTTA+TGG | 0.222142 | 8.4:+54457151 | MS.gene066885:CDS |
| AAGGAGACTATTGTTGATTA+TGG | 0.235701 | 8.4:+54456718 | MS.gene066885:CDS |
| CTTCTTCTCAACTCTCTTGA+TGG | 0.244269 | 8.4:+54456205 | MS.gene066885:CDS |
| TTGATTATGGCATTAGGTTT+TGG | 0.258022 | 8.4:+54456731 | MS.gene066885:CDS |
| TCTTCATAGACAAGTTTAAA+AGG | 0.269222 | 8.4:+54456870 | MS.gene066885:CDS |
| TCATTGCTTAAATTCTTATC+TGG | 0.270363 | 8.4:+54456275 | MS.gene066885:CDS |
| TTCCCATAGGCTCGTGGGCT+TGG | 0.272659 | 8.4:+54456018 | MS.gene066885:CDS |
| TAAAATTTCTTGTGACATAT+TGG | 0.273163 | 8.4:+54457279 | MS.gene066885:CDS |
| AACACTTAAGTAAAGATTAA+AGG | 0.289523 | 8.4:-54456801 | None:intergenic |
| CTTAAATTCTTATCTGGATT+CGG | 0.317876 | 8.4:+54456281 | MS.gene066885:CDS |
| GAAATAAGTTTCTTTGTTAT+GGG | 0.319760 | 8.4:+54457152 | MS.gene066885:CDS |
| CTATGGAGCAAGATGCAAAT+AGG | 0.330548 | 8.4:+54456962 | MS.gene066885:CDS |
| CCACCTTCTCTCCCAACATT+TGG | 0.331889 | 8.4:+54456246 | MS.gene066885:CDS |
| ATCCCAAGCCCACGAGCCTA+TGG | 0.351649 | 8.4:-54456021 | None:intergenic |
| CTCTTCTTATATCCTTTGCT+TGG | 0.354094 | 8.4:+54455865 | MS.gene066885:CDS |
| TTTGTGTCACTAGTGTTATT+GGG | 0.359751 | 8.4:-54455756 | None:intergenic |
| GCTAGGCTTGCTGTGGTGTT+TGG | 0.363493 | 8.4:+54457091 | MS.gene066885:CDS |
| TCCCATAGGCTCGTGGGCTT+GGG | 0.365125 | 8.4:+54456019 | MS.gene066885:CDS |
| CCACTATTGAAGGGGAACTA+TGG | 0.368908 | 8.4:+54456945 | MS.gene066885:CDS |
| CTATTGTTGATTATGGCATT+AGG | 0.382177 | 8.4:+54456725 | MS.gene066885:CDS |
| AATAAACACTTTCCTTCTCT+TGG | 0.390864 | 8.4:+54455789 | MS.gene066885:CDS |
| TCGTTCAAGAATCACCTAGA+TGG | 0.406654 | 8.4:+54456519 | MS.gene066885:CDS |
| TCATGGGCTGCTTAGTTGGT+GGG | 0.411276 | 8.4:+54456129 | MS.gene066885:CDS |
| TATGGTATGCCACTAGGTCT+TGG | 0.417877 | 8.4:+54456770 | MS.gene066885:CDS |
| AGTGCATAGGTGAACTCAAT+TGG | 0.418129 | 8.4:+54455826 | MS.gene066885:CDS |
| ATAGGCTCGTGGGCTTGGGA+TGG | 0.423347 | 8.4:+54456023 | MS.gene066885:CDS |
| ATGTGAAGACATATTGTTGA+TGG | 0.423829 | 8.4:-54456624 | None:intergenic |
| AGCATGCAATAGAATATTGT+TGG | 0.425151 | 8.4:-54456485 | None:intergenic |
| CCTCTTAGTAGAAGCCATCT+AGG | 0.428587 | 8.4:-54456533 | None:intergenic |
| CGAGGTAAGATTAGTGTCAT+TGG | 0.430581 | 8.4:+54456365 | MS.gene066885:CDS |
| TTTCTTGTCCCTTCCAGCCA+TGG | 0.435059 | 8.4:+54456409 | MS.gene066885:CDS |
| TAGGCTCGTGGGCTTGGGAT+GGG | 0.437513 | 8.4:+54456024 | MS.gene066885:CDS |
| CCATAGTTCCCCTTCAATAG+TGG | 0.437796 | 8.4:-54456945 | None:intergenic |
| AGGCTTGCTGTGGTGTTTGG+TGG | 0.445248 | 8.4:+54457094 | MS.gene066885:CDS |
| AGTCCATTGTTGGTGGGTGC+TGG | 0.448528 | 8.4:+54457124 | MS.gene066885:CDS |
| TATGGAGCAAGATGCAAATA+GGG | 0.452258 | 8.4:+54456963 | MS.gene066885:CDS |
| TTCATGGGCTGCTTAGTTGG+TGG | 0.452866 | 8.4:+54456128 | MS.gene066885:CDS |
| GTGTTCTTACCTGAGACAAA+AGG | 0.458209 | 8.4:+54457214 | MS.gene066885:CDS |
| AATGAGTATATCCAAATGTT+GGG | 0.467801 | 8.4:-54456257 | None:intergenic |
| GGCTTGGGATGGGCCAGCAC+AGG | 0.468146 | 8.4:+54456034 | MS.gene066885:CDS |
| ATGAAGATGGTATCTCACTT+AGG | 0.473575 | 8.4:-54456835 | None:intergenic |
| CCTAGATGGCTTCTACTAAG+AGG | 0.474491 | 8.4:+54456533 | MS.gene066885:CDS |
| GGCTTCCATCATATCCGAAT+GGG | 0.474719 | 8.4:+54456055 | MS.gene066885:CDS |
| TGAAGATGGTATCTCACTTA+GGG | 0.478015 | 8.4:-54456834 | None:intergenic |
| AACAATATTCTATTGCATGC+TGG | 0.482834 | 8.4:+54456487 | MS.gene066885:CDS |
| CAATGAGTATATCCAAATGT+TGG | 0.485248 | 8.4:-54456258 | None:intergenic |
| AGTATAATGTCCACTATTGA+AGG | 0.485637 | 8.4:+54456935 | MS.gene066885:CDS |
| CTCACACTGCATGTCCCATT+CGG | 0.486535 | 8.4:-54456069 | None:intergenic |
| TGTCACTAGTGTTATTGGGT+TGG | 0.486594 | 8.4:-54455752 | None:intergenic |
| TCACCGATGCACTTCCATCA+TGG | 0.492497 | 8.4:+54455922 | MS.gene066885:CDS |
| AAGTGAGATACCATCTTCAT+TGG | 0.502896 | 8.4:+54456838 | MS.gene066885:CDS |
| GGTTGGCTCAGAAGAGGAGT+TGG | 0.504676 | 8.4:-54455735 | None:intergenic |
| CATGTCCCATTCGGATATGA+TGG | 0.505372 | 8.4:-54456060 | None:intergenic |
| GGATTCGGCCGCGCTACCAT+CGG | 0.518567 | 8.4:+54456296 | MS.gene066885:CDS |
| GCTGAATTCCTCACACAAGT+TGG | 0.519274 | 8.4:-54457058 | None:intergenic |
| GAATTGATGTCCACAAGTAA+AGG | 0.520340 | 8.4:-54456463 | None:intergenic |
| TCACCGGTGCAGTGCCATGA+TGG | 0.520447 | 8.4:-54455936 | None:intergenic |
| TTGTTTGCATAAGCCATGGC+TGG | 0.524005 | 8.4:-54456422 | None:intergenic |
| GAGGAATTCAGCTTTGTCAA+TGG | 0.524056 | 8.4:+54457069 | MS.gene066885:CDS |
| CAAAGGATATAAGAAGAGCT+TGG | 0.524935 | 8.4:-54455860 | None:intergenic |
| AGAGAAGGTGGTGAAGAATG+AGG | 0.528486 | 8.4:-54456234 | None:intergenic |
| ATTCAGCTTTGTCAATGGCT+AGG | 0.528692 | 8.4:+54457074 | MS.gene066885:CDS |
| TATCCAAATGTTGGGAGAGA+AGG | 0.530631 | 8.4:-54456249 | None:intergenic |
| TTGCATAAGCCATGGCTGGA+AGG | 0.533578 | 8.4:-54456418 | None:intergenic |
| CTTGCAGACTCCTCATCACT+TGG | 0.534230 | 8.4:+54456167 | MS.gene066885:CDS |
| GTTCTAGCTTCCGAGCTCGT+TGG | 0.537522 | 8.4:+54456332 | MS.gene066885:CDS |
| TTGTTGGTGGGTGCTGGTAG+AGG | 0.538136 | 8.4:+54457130 | MS.gene066885:CDS |
| TGTTCTTACCTGAGACAAAA+GGG | 0.538318 | 8.4:+54457215 | MS.gene066885:CDS |
| CCATCGCTTTCCAACGAGCT+CGG | 0.545161 | 8.4:-54456342 | None:intergenic |
| TGCATAAGCCATGGCTGGAA+GGG | 0.547607 | 8.4:-54456417 | None:intergenic |
| GATATGATGGAAGCCTGTGC+TGG | 0.549688 | 8.4:-54456047 | None:intergenic |
| CTTCCATCATGGCACTGCAC+CGG | 0.552872 | 8.4:+54455933 | MS.gene066885:CDS |
| TCAATTGTGAAGCCAAGAGA+AGG | 0.553764 | 8.4:-54455801 | None:intergenic |
| CTAGATGGCTTCTACTAAGA+GGG | 0.557319 | 8.4:+54456534 | MS.gene066885:CDS |
| CTACCAGCACCCACCAACAA+TGG | 0.564182 | 8.4:-54457127 | None:intergenic |
| GTCAATGGCTAGGCTTGCTG+TGG | 0.568892 | 8.4:+54457084 | MS.gene066885:CDS |
| AAATAAGTTTCTTTGTTATG+GGG | 0.570429 | 8.4:+54457153 | MS.gene066885:CDS |
| TCCCAAGCCCACGAGCCTAT+GGG | 0.572400 | 8.4:-54456020 | None:intergenic |
| CCAAATGTTGGGAGAGAAGG+TGG | 0.572670 | 8.4:-54456246 | None:intergenic |
| TGCAAAAGAAATGGTCCTCA+AGG | 0.573559 | 8.4:+54456699 | MS.gene066885:CDS |
| GTCTATTATGGTATGCCACT+AGG | 0.573826 | 8.4:+54456764 | MS.gene066885:CDS |
| ATGCAAACAAAACTTCCTCA+TGG | 0.576345 | 8.4:+54456435 | MS.gene066885:CDS |
| TAAGTTTCCCATAGGCTCGT+GGG | 0.583541 | 8.4:+54456013 | MS.gene066885:CDS |
| CCGAGCTCGTTGGAAAGCGA+TGG | 0.585244 | 8.4:+54456342 | MS.gene066885:CDS |
| GTAAGTTTCCCATAGGCTCG+TGG | 0.586368 | 8.4:+54456012 | MS.gene066885:CDS |
| CTCGTTGGAAAGCGATGGCG+AGG | 0.587564 | 8.4:+54456347 | MS.gene066885:CDS |
| TGTGAGAGCTCTATCATCAC+AGG | 0.588393 | 8.4:+54456086 | MS.gene066885:CDS |
| GAGAGCAGTTTGTGATACAA+TGG | 0.592019 | 8.4:+54457237 | MS.gene066885:CDS |
| TGCATCAAAGATCCAAGCAA+AGG | 0.595046 | 8.4:-54455877 | None:intergenic |
| AGGCTTCCATCATATCCGAA+TGG | 0.606333 | 8.4:+54456054 | MS.gene066885:CDS |
| GTATAATGTCCACTATTGAA+GGG | 0.609508 | 8.4:+54456936 | MS.gene066885:CDS |
| AACAAGCGATGAAGTGCCGA+TGG | 0.610016 | 8.4:-54456312 | None:intergenic |
| TTATTGGGTTGGCTCAGAAG+AGG | 0.610379 | 8.4:-54455741 | None:intergenic |
| CAACAATATGTCTTCACATG+AGG | 0.611494 | 8.4:+54456628 | MS.gene066885:CDS |
| TGATGAGGAGTCTGCAAGTG+TGG | 0.615473 | 8.4:-54456162 | None:intergenic |
| GATGTGTGTAAGTTTCCCAT+AGG | 0.622795 | 8.4:+54456005 | MS.gene066885:CDS |
| CATGGAGGAACCTTTACTTG+TGG | 0.625267 | 8.4:+54456453 | MS.gene066885:CDS |
| GTTCTTGCGACCAAGTGATG+AGG | 0.632393 | 8.4:-54456177 | None:intergenic |
| ATGAAGTGCCGATGGTAGCG+CGG | 0.635833 | 8.4:-54456304 | None:intergenic |
| TATAATGTCCACTATTGAAG+GGG | 0.638910 | 8.4:+54456937 | MS.gene066885:CDS |
| TTCACAATTGAAAAGTGCAT+AGG | 0.646323 | 8.4:+54455813 | MS.gene066885:CDS |
| CAAGTAAAGGTTCCTCCATG+AGG | 0.657990 | 8.4:-54456450 | None:intergenic |
| AATCAACAATAGTCTCCTTG+AGG | 0.659489 | 8.4:-54456714 | None:intergenic |
| AATTGTTTCCAACTTGTGTG+AGG | 0.667556 | 8.4:+54457050 | MS.gene066885:CDS |
| GTGCCATGATGGAAGTGCAT+CGG | 0.671550 | 8.4:-54455925 | None:intergenic |
| GACAAGTTTCCAAGACCTAG+TGG | 0.688488 | 8.4:-54456779 | None:intergenic |
| CAAACAAAACTTCCTCATGG+AGG | 0.705134 | 8.4:+54456438 | MS.gene066885:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACTTAAGTAAAGATTAA+AGG | - | chr8.4:54456804-54456823 | None:intergenic | 20.0% |
| !! | TAAAATTTCTTGTGACATAT+TGG | + | chr8.4:54457279-54457298 | MS.gene066885:CDS | 20.0% |
| !!! | AAATAAGTTTCTTTGTTATG+GGG | + | chr8.4:54457153-54457172 | MS.gene066885:CDS | 20.0% |
| !!! | GAAATAAGTTTCTTTGTTAT+GGG | + | chr8.4:54457152-54457171 | MS.gene066885:CDS | 20.0% |
| !!! | TATTGTTGATGGATAAATTT+AGG | - | chr8.4:54456616-54456635 | None:intergenic | 20.0% |
| ! | AATGAGTATATCCAAATGTT+GGG | - | chr8.4:54456260-54456279 | None:intergenic | 25.0% |
| ! | CTTAAATTCTTATCTGGATT+CGG | + | chr8.4:54456281-54456300 | MS.gene066885:CDS | 25.0% |
| ! | GGAAATAAGTTTCTTTGTTA+TGG | + | chr8.4:54457151-54457170 | MS.gene066885:CDS | 25.0% |
| ! | TCATTGCTTAAATTCTTATC+TGG | + | chr8.4:54456275-54456294 | MS.gene066885:CDS | 25.0% |
| ! | TCTTCATAGACAAGTTTAAA+AGG | + | chr8.4:54456870-54456889 | MS.gene066885:CDS | 25.0% |
| !! | AACTTTTGTTGCAAAAGAAA+TGG | + | chr8.4:54456690-54456709 | MS.gene066885:CDS | 25.0% |
| !! | TTTGTGTTTTGTATCATAAG+TGG | + | chr8.4:54456905-54456924 | MS.gene066885:CDS | 25.0% |
| AAAAATGTGACCAATGAAGA+TGG | - | chr8.4:54456851-54456870 | None:intergenic | 30.0% | |
| AACAATATTCTATTGCATGC+TGG | + | chr8.4:54456487-54456506 | MS.gene066885:CDS | 30.0% | |
| AATAAACACTTTCCTTCTCT+TGG | + | chr8.4:54455789-54455808 | MS.gene066885:CDS | 30.0% | |
| AGCATGCAATAGAATATTGT+TGG | - | chr8.4:54456488-54456507 | None:intergenic | 30.0% | |
| AGTATAATGTCCACTATTGA+AGG | + | chr8.4:54456935-54456954 | MS.gene066885:CDS | 30.0% | |
| ATGTGAAGACATATTGTTGA+TGG | - | chr8.4:54456627-54456646 | None:intergenic | 30.0% | |
| CAATGAGTATATCCAAATGT+TGG | - | chr8.4:54456261-54456280 | None:intergenic | 30.0% | |
| GTATAATGTCCACTATTGAA+GGG | + | chr8.4:54456936-54456955 | MS.gene066885:CDS | 30.0% | |
| TATAATGTCCACTATTGAAG+GGG | + | chr8.4:54456937-54456956 | MS.gene066885:CDS | 30.0% | |
| ! | AAGGAGACTATTGTTGATTA+TGG | + | chr8.4:54456718-54456737 | MS.gene066885:CDS | 30.0% |
| ! | CTATTGTTGATTATGGCATT+AGG | + | chr8.4:54456725-54456744 | MS.gene066885:CDS | 30.0% |
| ! | CTTTTGCAACAAAAGTTTGA+GGG | - | chr8.4:54456687-54456706 | None:intergenic | 30.0% |
| ! | GAAAACACTGAGATTTTGAA+TGG | + | chr8.4:54455957-54455976 | MS.gene066885:CDS | 30.0% |
| ! | TCTTTTGCAACAAAAGTTTG+AGG | - | chr8.4:54456688-54456707 | None:intergenic | 30.0% |
| ! | TTCACAATTGAAAAGTGCAT+AGG | + | chr8.4:54455813-54455832 | MS.gene066885:CDS | 30.0% |
| ! | TTGATTATGGCATTAGGTTT+TGG | + | chr8.4:54456731-54456750 | MS.gene066885:CDS | 30.0% |
| ! | TTTGTGTCACTAGTGTTATT+GGG | - | chr8.4:54455759-54455778 | None:intergenic | 30.0% |
| !! | AGAGAAGGAAAGTGTTTATT+TGG | - | chr8.4:54455789-54455808 | None:intergenic | 30.0% |
| !! | TTCTTTGTTATGGGGTTTTT+GGG | + | chr8.4:54457161-54457180 | MS.gene066885:CDS | 30.0% |
| !! | TTTCTTTGTTATGGGGTTTT+TGG | + | chr8.4:54457160-54457179 | MS.gene066885:CDS | 30.0% |
| !! | TTTTGTGTCACTAGTGTTAT+TGG | - | chr8.4:54455760-54455779 | None:intergenic | 30.0% |
| !!! | ATTGGTTTTAGTGGAGTATT+TGG | + | chr8.4:54457190-54457209 | MS.gene066885:CDS | 30.0% |
| AAGTGAGATACCATCTTCAT+TGG | + | chr8.4:54456838-54456857 | MS.gene066885:CDS | 35.0% | |
| AATCAACAATAGTCTCCTTG+AGG | - | chr8.4:54456717-54456736 | None:intergenic | 35.0% | |
| AATTGTTTCCAACTTGTGTG+AGG | + | chr8.4:54457050-54457069 | MS.gene066885:CDS | 35.0% | |
| ATGAAGATGGTATCTCACTT+AGG | - | chr8.4:54456838-54456857 | None:intergenic | 35.0% | |
| ATGCAAACAAAACTTCCTCA+TGG | + | chr8.4:54456435-54456454 | MS.gene066885:CDS | 35.0% | |
| CAAAGGATATAAGAAGAGCT+TGG | - | chr8.4:54455863-54455882 | None:intergenic | 35.0% | |
| CAACAATATGTCTTCACATG+AGG | + | chr8.4:54456628-54456647 | MS.gene066885:CDS | 35.0% | |
| CTCTTCTTATATCCTTTGCT+TGG | + | chr8.4:54455865-54455884 | MS.gene066885:CDS | 35.0% | |
| GAATTGATGTCCACAAGTAA+AGG | - | chr8.4:54456466-54456485 | None:intergenic | 35.0% | |
| GGAATTGGAGTTGTCTATTA+TGG | + | chr8.4:54456752-54456771 | MS.gene066885:CDS | 35.0% | |
| TATGGAGCAAGATGCAAATA+GGG | + | chr8.4:54456963-54456982 | MS.gene066885:CDS | 35.0% | |
| TCTACTAAGAGGGAAAAAAG+AGG | + | chr8.4:54456544-54456563 | MS.gene066885:CDS | 35.0% | |
| TGAAGATGGTATCTCACTTA+GGG | - | chr8.4:54456837-54456856 | None:intergenic | 35.0% | |
| TGTTCTTACCTGAGACAAAA+GGG | + | chr8.4:54457215-54457234 | MS.gene066885:CDS | 35.0% | |
| ! | CAAAATCTCAGTGTTTTCAC+CGG | - | chr8.4:54455955-54455974 | None:intergenic | 35.0% |
| !! | GGCTTCTTTTGTTTCACTAT+AGG | + | chr8.4:54456386-54456405 | MS.gene066885:CDS | 35.0% |
| !!! | AGTTTTGTTTGCATAAGCCA+TGG | - | chr8.4:54456429-54456448 | None:intergenic | 35.0% |
| !!! | ATGGCATTAGGTTTTGGAAT+TGG | + | chr8.4:54456737-54456756 | MS.gene066885:CDS | 35.0% |
| AGTGCATAGGTGAACTCAAT+TGG | + | chr8.4:54455826-54455845 | MS.gene066885:CDS | 40.0% | |
| CAAACAAAACTTCCTCATGG+AGG | + | chr8.4:54456438-54456457 | MS.gene066885:CDS | 40.0% | |
| CGAGGTAAGATTAGTGTCAT+TGG | + | chr8.4:54456365-54456384 | MS.gene066885:CDS | 40.0% | |
| CTAGATGGCTTCTACTAAGA+GGG | + | chr8.4:54456534-54456553 | MS.gene066885:CDS | 40.0% | |
| CTATGGAGCAAGATGCAAAT+AGG | + | chr8.4:54456962-54456981 | MS.gene066885:CDS | 40.0% | |
| CTTCTTCTCAACTCTCTTGA+TGG | + | chr8.4:54456205-54456224 | MS.gene066885:CDS | 40.0% | |
| GAGAGCAGTTTGTGATACAA+TGG | + | chr8.4:54457237-54457256 | MS.gene066885:CDS | 40.0% | |
| GATGTGTGTAAGTTTCCCAT+AGG | + | chr8.4:54456005-54456024 | MS.gene066885:CDS | 40.0% | |
| GTCTATTATGGTATGCCACT+AGG | + | chr8.4:54456764-54456783 | MS.gene066885:CDS | 40.0% | |
| GTGTTCTTACCTGAGACAAA+AGG | + | chr8.4:54457214-54457233 | MS.gene066885:CDS | 40.0% | |
| TAAGCAGCCCATGAAAAACA+TGG | - | chr8.4:54456123-54456142 | None:intergenic | 40.0% | |
| TATCCAAATGTTGGGAGAGA+AGG | - | chr8.4:54456252-54456271 | None:intergenic | 40.0% | |
| TCAATTGTGAAGCCAAGAGA+AGG | - | chr8.4:54455804-54455823 | None:intergenic | 40.0% | |
| TCGTTCAAGAATCACCTAGA+TGG | + | chr8.4:54456519-54456538 | MS.gene066885:CDS | 40.0% | |
| TGAAAAACATGGAAGCTGGA+AGG | - | chr8.4:54456112-54456131 | None:intergenic | 40.0% | |
| TGCAAAAGAAATGGTCCTCA+AGG | + | chr8.4:54456699-54456718 | MS.gene066885:CDS | 40.0% | |
| TGCATCAAAGATCCAAGCAA+AGG | - | chr8.4:54455880-54455899 | None:intergenic | 40.0% | |
| ! | AGCTTTTAGTCCATTGTTGG+TGG | + | chr8.4:54457117-54457136 | MS.gene066885:CDS | 40.0% |
| ! | ATTCAGCTTTGTCAATGGCT+AGG | + | chr8.4:54457074-54457093 | MS.gene066885:CDS | 40.0% |
| ! | CCAGCTTCCATGTTTTTCAT+GGG | + | chr8.4:54456113-54456132 | MS.gene066885:CDS | 40.0% |
| ! | GAGGAATTCAGCTTTGTCAA+TGG | + | chr8.4:54457069-54457088 | MS.gene066885:CDS | 40.0% |
| ! | GCTTTTAGTCCATTGTTGGT+GGG | + | chr8.4:54457118-54457137 | MS.gene066885:CDS | 40.0% |
| ! | TCCAGCTTCCATGTTTTTCA+TGG | + | chr8.4:54456112-54456131 | MS.gene066885:CDS | 40.0% |
| ! | TGGAGCTTTTAGTCCATTGT+TGG | + | chr8.4:54457114-54457133 | MS.gene066885:CDS | 40.0% |
| ! | TGTCACTAGTGTTATTGGGT+TGG | - | chr8.4:54455755-54455774 | None:intergenic | 40.0% |
| !! | TTTTTCATGGGCTGCTTAGT+TGG | + | chr8.4:54456125-54456144 | MS.gene066885:CDS | 40.0% |
| !!! | TTGTTATGGGGTTTTTGGGT+TGG | + | chr8.4:54457165-54457184 | MS.gene066885:CDS | 40.0% |
| AGAGAAGGTGGTGAAGAATG+AGG | - | chr8.4:54456237-54456256 | None:intergenic | 45.0% | |
| AGGCTTCCATCATATCCGAA+TGG | + | chr8.4:54456054-54456073 | MS.gene066885:CDS | 45.0% | |
| CAAGTAAAGGTTCCTCCATG+AGG | - | chr8.4:54456453-54456472 | None:intergenic | 45.0% | |
| CATGGAGGAACCTTTACTTG+TGG | + | chr8.4:54456453-54456472 | MS.gene066885:CDS | 45.0% | |
| CATGTCCCATTCGGATATGA+TGG | - | chr8.4:54456063-54456082 | None:intergenic | 45.0% | |
| CCACTATTGAAGGGGAACTA+TGG | + | chr8.4:54456945-54456964 | MS.gene066885:CDS | 45.0% | |
| CCATAGTTCCCCTTCAATAG+TGG | - | chr8.4:54456948-54456967 | None:intergenic | 45.0% | |
| CCCATGAAAAACATGGAAGC+TGG | - | chr8.4:54456116-54456135 | None:intergenic | 45.0% | |
| CCTAGATGGCTTCTACTAAG+AGG | + | chr8.4:54456533-54456552 | MS.gene066885:CDS | 45.0% | |
| CCTCTTAGTAGAAGCCATCT+AGG | - | chr8.4:54456536-54456555 | None:intergenic | 45.0% | |
| GACAAGTTTCCAAGACCTAG+TGG | - | chr8.4:54456782-54456801 | None:intergenic | 45.0% | |
| GCTGAATTCCTCACACAAGT+TGG | - | chr8.4:54457061-54457080 | None:intergenic | 45.0% | |
| GGCTTCCATCATATCCGAAT+GGG | + | chr8.4:54456055-54456074 | MS.gene066885:CDS | 45.0% | |
| TAAGTTTCCCATAGGCTCGT+GGG | + | chr8.4:54456013-54456032 | MS.gene066885:CDS | 45.0% | |
| TATGGTATGCCACTAGGTCT+TGG | + | chr8.4:54456770-54456789 | MS.gene066885:CDS | 45.0% | |
| TGTGAGAGCTCTATCATCAC+AGG | + | chr8.4:54456086-54456105 | MS.gene066885:CDS | 45.0% | |
| TTGTTTGCATAAGCCATGGC+TGG | - | chr8.4:54456425-54456444 | None:intergenic | 45.0% | |
| !! | TTATTGGGTTGGCTCAGAAG+AGG | - | chr8.4:54455744-54455763 | None:intergenic | 45.0% |
| !!! | GGGTTGGCTATTGGTTTTAG+TGG | + | chr8.4:54457181-54457200 | MS.gene066885:CDS | 45.0% |
| CCAAATGTTGGGAGAGAAGG+TGG | - | chr8.4:54456249-54456268 | None:intergenic | 50.0% | |
| CCACCTTCTCTCCCAACATT+TGG | + | chr8.4:54456246-54456265 | MS.gene066885:CDS | 50.0% | |
| CTCACACTGCATGTCCCATT+CGG | - | chr8.4:54456072-54456091 | None:intergenic | 50.0% | |
| CTTGCAGACTCCTCATCACT+TGG | + | chr8.4:54456167-54456186 | MS.gene066885:CDS | 50.0% | |
| GTAAGTTTCCCATAGGCTCG+TGG | + | chr8.4:54456012-54456031 | MS.gene066885:CDS | 50.0% | |
| GTTCTTGCGACCAAGTGATG+AGG | - | chr8.4:54456180-54456199 | None:intergenic | 50.0% | |
| TCACCGATGCACTTCCATCA+TGG | + | chr8.4:54455922-54455941 | MS.gene066885:CDS | 50.0% | |
| TGATGAGGAGTCTGCAAGTG+TGG | - | chr8.4:54456165-54456184 | None:intergenic | 50.0% | |
| TGCATAAGCCATGGCTGGAA+GGG | - | chr8.4:54456420-54456439 | None:intergenic | 50.0% | |
| TTGCATAAGCCATGGCTGGA+AGG | - | chr8.4:54456421-54456440 | None:intergenic | 50.0% | |
| TTTCTTGTCCCTTCCAGCCA+TGG | + | chr8.4:54456409-54456428 | MS.gene066885:CDS | 50.0% | |
| ! | ACTGCTCTCCCTTTTGTCTC+AGG | - | chr8.4:54457226-54457245 | None:intergenic | 50.0% |
| ! | GATATGATGGAAGCCTGTGC+TGG | - | chr8.4:54456050-54456069 | None:intergenic | 50.0% |
| ! | GTGCCATGATGGAAGTGCAT+CGG | - | chr8.4:54455928-54455947 | None:intergenic | 50.0% |
| ! | TCATGGGCTGCTTAGTTGGT+GGG | + | chr8.4:54456129-54456148 | MS.gene066885:CDS | 50.0% |
| ! | TTCATGGGCTGCTTAGTTGG+TGG | + | chr8.4:54456128-54456147 | MS.gene066885:CDS | 50.0% |
| !! | AACAAGCGATGAAGTGCCGA+TGG | - | chr8.4:54456315-54456334 | None:intergenic | 50.0% |
| !!! | GGGGTTTTTGGGTTGGCTAT+TGG | + | chr8.4:54457172-54457191 | MS.gene066885:CDS | 50.0% |
| CCATCGCTTTCCAACGAGCT+CGG | - | chr8.4:54456345-54456364 | None:intergenic | 55.0% | |
| CTACCAGCACCCACCAACAA+TGG | - | chr8.4:54457130-54457149 | None:intergenic | 55.0% | |
| CTTCCATCATGGCACTGCAC+CGG | + | chr8.4:54455933-54455952 | MS.gene066885:CDS | 55.0% | |
| ! | AGTCCATTGTTGGTGGGTGC+TGG | + | chr8.4:54457124-54457143 | MS.gene066885:CDS | 55.0% |
| ! | GGTTGGCTCAGAAGAGGAGT+TGG | - | chr8.4:54455738-54455757 | None:intergenic | 55.0% |
| !! | AGGCTTGCTGTGGTGTTTGG+TGG | + | chr8.4:54457094-54457113 | MS.gene066885:CDS | 55.0% |
| !! | ATGAAGTGCCGATGGTAGCG+CGG | - | chr8.4:54456307-54456326 | None:intergenic | 55.0% |
| !! | GCTAGGCTTGCTGTGGTGTT+TGG | + | chr8.4:54457091-54457110 | MS.gene066885:CDS | 55.0% |
| !! | GTCAATGGCTAGGCTTGCTG+TGG | + | chr8.4:54457084-54457103 | MS.gene066885:CDS | 55.0% |
| !! | GTTCTAGCTTCCGAGCTCGT+TGG | + | chr8.4:54456332-54456351 | MS.gene066885:CDS | 55.0% |
| !! | TTGTTGGTGGGTGCTGGTAG+AGG | + | chr8.4:54457130-54457149 | MS.gene066885:CDS | 55.0% |
| ATAGGCTCGTGGGCTTGGGA+TGG | + | chr8.4:54456023-54456042 | MS.gene066885:CDS | 60.0% | |
| ATCCCAAGCCCACGAGCCTA+TGG | - | chr8.4:54456024-54456043 | None:intergenic | 60.0% | |
| CCGAGCTCGTTGGAAAGCGA+TGG | + | chr8.4:54456342-54456361 | MS.gene066885:CDS | 60.0% | |
| CTCGTTGGAAAGCGATGGCG+AGG | + | chr8.4:54456347-54456366 | MS.gene066885:CDS | 60.0% | |
| TAGGCTCGTGGGCTTGGGAT+GGG | + | chr8.4:54456024-54456043 | MS.gene066885:CDS | 60.0% | |
| TCACCGGTGCAGTGCCATGA+TGG | - | chr8.4:54455939-54455958 | None:intergenic | 60.0% | |
| TCCCAAGCCCACGAGCCTAT+GGG | - | chr8.4:54456023-54456042 | None:intergenic | 60.0% | |
| TCCCATAGGCTCGTGGGCTT+GGG | + | chr8.4:54456019-54456038 | MS.gene066885:CDS | 60.0% | |
| TTCCCATAGGCTCGTGGGCT+TGG | + | chr8.4:54456018-54456037 | MS.gene066885:CDS | 60.0% | |
| GGATTCGGCCGCGCTACCAT+CGG | + | chr8.4:54456296-54456315 | MS.gene066885:CDS | 65.0% | |
| GGCTTGGGATGGGCCAGCAC+AGG | + | chr8.4:54456034-54456053 | MS.gene066885:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 54455726 | 54457306 | 54455726 | ID=MS.gene066885 |
| chr8.4 | mRNA | 54455726 | 54457306 | 54455726 | ID=MS.gene066885.t1;Parent=MS.gene066885 |
| chr8.4 | exon | 54455726 | 54457306 | 54455726 | ID=MS.gene066885.t1.exon1;Parent=MS.gene066885.t1 |
| chr8.4 | CDS | 54455726 | 54457306 | 54455726 | ID=cds.MS.gene066885.t1;Parent=MS.gene066885.t1 |
| Gene Sequence |
| Protein sequence |
