Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066943.t1 | XP_013448489.1 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 2.50E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066943.t1 | Q9S7T8 | 50.9 | 391 | 186 | 5 | 7 | 394 | 3 | 390 | 3.7e-104 | 379.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066943.t1 | Q2HSM8 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 1.8e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene066943 | PPI |
| MS.gene031697 | MS.gene066943 | PPI |
| MS.gene065945 | MS.gene066943 | PPI |
| MS.gene066943 | MS.gene045585 | PPI |
| MS.gene066943 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066943.t1 | MTR_7g451890 | 89.169 | 397 | 42 | 1 | 1 | 396 | 6 | 402 | 0.0 | 689 |
| MS.gene066943.t1 | MTR_7g047780 | 87.909 | 397 | 47 | 1 | 1 | 396 | 6 | 402 | 0.0 | 676 |
| MS.gene066943.t1 | MTR_7g050750 | 85.354 | 396 | 57 | 1 | 2 | 396 | 1 | 396 | 0.0 | 660 |
| MS.gene066943.t1 | MTR_7g050810 | 83.503 | 394 | 64 | 1 | 4 | 396 | 11 | 404 | 0.0 | 641 |
| MS.gene066943.t1 | MTR_3g101180 | 64.987 | 397 | 132 | 3 | 5 | 394 | 2 | 398 | 1.06e-176 | 498 |
| MS.gene066943.t1 | MTR_8g461160 | 66.076 | 395 | 127 | 4 | 5 | 395 | 2 | 393 | 8.67e-175 | 493 |
| MS.gene066943.t1 | MTR_7g050830 | 78.438 | 320 | 37 | 3 | 4 | 302 | 11 | 319 | 8.93e-173 | 485 |
| MS.gene066943.t1 | MTR_3g101010 | 63.239 | 389 | 138 | 3 | 9 | 396 | 5 | 389 | 2.64e-168 | 476 |
| MS.gene066943.t1 | MTR_3g018740 | 63.104 | 393 | 133 | 6 | 7 | 395 | 3 | 387 | 1.76e-165 | 469 |
| MS.gene066943.t1 | MTR_3g101130 | 61.893 | 391 | 139 | 4 | 9 | 396 | 6 | 389 | 1.56e-163 | 464 |
| MS.gene066943.t1 | MTR_4g045707 | 61.697 | 389 | 142 | 4 | 9 | 396 | 6 | 388 | 2.89e-163 | 463 |
| MS.gene066943.t1 | MTR_8g027395 | 59.335 | 391 | 150 | 3 | 7 | 396 | 15 | 397 | 1.80e-158 | 452 |
| MS.gene066943.t1 | MTR_3g101030 | 57.855 | 401 | 144 | 5 | 15 | 396 | 35 | 429 | 3.47e-153 | 439 |
| MS.gene066943.t1 | MTR_3g048000 | 57.364 | 387 | 139 | 5 | 10 | 394 | 28 | 390 | 3.07e-149 | 428 |
| MS.gene066943.t1 | MTR_4g088525 | 60.055 | 363 | 138 | 2 | 33 | 394 | 11 | 367 | 1.86e-147 | 422 |
| MS.gene066943.t1 | MTR_2g046030 | 56.489 | 393 | 159 | 5 | 7 | 395 | 3 | 387 | 1.10e-146 | 421 |
| MS.gene066943.t1 | MTR_8g027420 | 56.266 | 391 | 151 | 4 | 7 | 396 | 4 | 375 | 2.48e-146 | 420 |
| MS.gene066943.t1 | MTR_2g045980 | 55.725 | 393 | 162 | 5 | 7 | 395 | 3 | 387 | 1.23e-144 | 416 |
| MS.gene066943.t1 | MTR_3g101050 | 57.841 | 389 | 132 | 6 | 13 | 394 | 33 | 396 | 2.31e-141 | 408 |
| MS.gene066943.t1 | MTR_3g101200 | 56.997 | 393 | 141 | 6 | 3 | 394 | 25 | 390 | 3.40e-141 | 407 |
| MS.gene066943.t1 | MTR_3g015620 | 53.015 | 398 | 152 | 7 | 4 | 395 | 11 | 379 | 4.47e-133 | 386 |
| MS.gene066943.t1 | MTR_4g088535 | 54.948 | 384 | 148 | 4 | 9 | 391 | 7 | 366 | 1.13e-132 | 385 |
| MS.gene066943.t1 | MTR_3g102920 | 54.663 | 386 | 132 | 7 | 13 | 394 | 62 | 408 | 7.77e-130 | 379 |
| MS.gene066943.t1 | MTR_3g101190 | 51.337 | 374 | 116 | 3 | 24 | 396 | 4 | 312 | 2.33e-123 | 359 |
| MS.gene066943.t1 | MTR_3g100995 | 62.162 | 259 | 87 | 3 | 141 | 396 | 14 | 264 | 1.16e-112 | 330 |
| MS.gene066943.t1 | MTR_3g018747 | 60.076 | 263 | 87 | 3 | 134 | 395 | 9 | 254 | 3.14e-103 | 306 |
| MS.gene066943.t1 | MTR_3g015760 | 59.316 | 263 | 101 | 3 | 134 | 395 | 23 | 280 | 4.91e-97 | 291 |
| MS.gene066943.t1 | MTR_3g100010 | 48.889 | 315 | 112 | 4 | 31 | 311 | 37 | 336 | 4.89e-93 | 283 |
| MS.gene066943.t1 | MTR_3g111160 | 60.268 | 224 | 83 | 3 | 175 | 396 | 1 | 220 | 1.02e-82 | 252 |
| MS.gene066943.t1 | MTR_3g100520 | 59.375 | 224 | 74 | 4 | 175 | 396 | 1 | 209 | 5.87e-82 | 250 |
| MS.gene066943.t1 | MTR_3g114310 | 40.157 | 381 | 203 | 10 | 33 | 396 | 38 | 410 | 7.17e-81 | 254 |
| MS.gene066943.t1 | MTR_3g101110 | 56.962 | 237 | 72 | 4 | 137 | 370 | 71 | 280 | 3.56e-77 | 240 |
| MS.gene066943.t1 | MTR_2g046410 | 56.808 | 213 | 84 | 2 | 187 | 395 | 140 | 348 | 1.33e-74 | 236 |
| MS.gene066943.t1 | MTR_3g099970 | 59.694 | 196 | 62 | 2 | 134 | 329 | 20 | 198 | 1.12e-73 | 228 |
| MS.gene066943.t1 | MTR_3g101150 | 64.557 | 158 | 52 | 2 | 240 | 394 | 1 | 157 | 1.04e-65 | 206 |
| MS.gene066943.t1 | MTR_3g101020 | 52.083 | 192 | 57 | 3 | 208 | 396 | 1 | 160 | 1.74e-58 | 188 |
| MS.gene066943.t1 | MTR_3g102870 | 53.939 | 165 | 76 | 0 | 197 | 361 | 1 | 165 | 4.91e-54 | 177 |
| MS.gene066943.t1 | MTR_3g111150 | 49.143 | 175 | 64 | 3 | 12 | 186 | 2 | 151 | 2.43e-49 | 164 |
| MS.gene066943.t1 | MTR_3g100990 | 55.118 | 127 | 54 | 2 | 9 | 134 | 5 | 129 | 6.45e-33 | 129 |
| MS.gene066943.t1 | MTR_3g101140 | 48.571 | 105 | 53 | 1 | 292 | 396 | 13 | 116 | 3.43e-21 | 88.6 |
| MS.gene066943.t1 | MTR_4g093550 | 47.126 | 87 | 44 | 1 | 7 | 93 | 4 | 88 | 4.30e-14 | 68.2 |
| MS.gene066943.t1 | MTR_6g046890 | 56.250 | 64 | 28 | 0 | 26 | 89 | 14 | 77 | 1.20e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066943.t1 | AT1G47710 | 51.969 | 381 | 177 | 5 | 17 | 394 | 13 | 390 | 2.04e-132 | 385 |
| MS.gene066943.t1 | AT1G47710 | 51.969 | 381 | 177 | 5 | 17 | 394 | 40 | 417 | 1.31e-131 | 384 |
| MS.gene066943.t1 | AT2G26390 | 45.178 | 394 | 199 | 6 | 7 | 393 | 3 | 386 | 3.25e-115 | 341 |
| MS.gene066943.t1 | AT2G25240 | 46.547 | 391 | 194 | 7 | 7 | 393 | 3 | 382 | 1.24e-113 | 337 |
| MS.gene066943.t1 | AT3G45220 | 44.584 | 397 | 201 | 7 | 7 | 393 | 3 | 390 | 5.91e-113 | 336 |
| MS.gene066943.t1 | AT1G62170 | 44.557 | 395 | 184 | 7 | 7 | 393 | 64 | 431 | 4.49e-106 | 320 |
| MS.gene066943.t1 | AT1G64030 | 44.162 | 394 | 188 | 9 | 7 | 393 | 3 | 371 | 8.15e-100 | 302 |
| MS.gene066943.t1 | AT1G62170 | 41.121 | 428 | 184 | 8 | 7 | 393 | 64 | 464 | 8.82e-99 | 302 |
| MS.gene066943.t1 | AT2G14540 | 47.139 | 367 | 165 | 7 | 32 | 393 | 55 | 397 | 2.12e-98 | 299 |
| MS.gene066943.t1 | AT2G35580 | 44.262 | 366 | 166 | 10 | 39 | 393 | 33 | 371 | 1.14e-92 | 283 |
| MS.gene066943.t1 | AT1G64010 | 44.545 | 220 | 96 | 4 | 175 | 393 | 1 | 195 | 1.10e-59 | 192 |
| MS.gene066943.t1 | AT1G64010 | 44.390 | 205 | 88 | 4 | 190 | 393 | 2 | 181 | 5.68e-53 | 174 |
| MS.gene066943.t1 | AT1G63280 | 57.627 | 118 | 46 | 2 | 131 | 246 | 5 | 120 | 2.21e-36 | 129 |
| MS.gene066943.t1 | AT1G62160 | 38.798 | 183 | 85 | 3 | 213 | 393 | 61 | 218 | 1.16e-34 | 128 |
| MS.gene066943.t1 | AT1G51330 | 50.893 | 112 | 52 | 3 | 132 | 240 | 29 | 140 | 3.22e-25 | 102 |
| MS.gene066943.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 17 | 124 | 13 | 120 | 9.53e-12 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTTTTAGTAG+AGG | + | 50839:37192-37211 | MS.gene066943:intron | 10.0% |
| !!! | AAAACTTAAATTTTTCTGTT+TGG | - | 50839:38009-38028 | MS.gene066943:intergenic | 15.0% |
| !!! | ATTAGTAACAGTTTATTTTA+GGG | - | 50839:37808-37827 | MS.gene066943:intergenic | 15.0% |
| !!! | TATTAGTAACAGTTTATTTT+AGG | - | 50839:37809-37828 | MS.gene066943:intergenic | 15.0% |
| !! | AAAAATCAATAATGTGACTT+TGG | + | 50839:38222-38241 | MS.gene066943:intron | 20.0% |
| !! | AAAATATGACAAGGATAATT+AGG | + | 50839:38362-38381 | MS.gene066943:intron | 20.0% |
| !! | AAATATGACAAGGATAATTA+GGG | + | 50839:38363-38382 | MS.gene066943:intron | 20.0% |
| !! | ATTGATCTAGAAATTTGTAA+GGG | - | 50839:37964-37983 | MS.gene066943:intergenic | 20.0% |
| !! | ATTTGTATGTAATTGTACTA+TGG | - | 50839:37878-37897 | MS.gene066943:intergenic | 20.0% |
| !! | GAAACAAAGTTATATGTAAA+AGG | - | 50839:37987-38006 | MS.gene066943:intergenic | 20.0% |
| !! | GCTCATTCTATTAAAATAAT+AGG | + | 50839:37462-37481 | MS.gene066943:intron | 20.0% |
| !! | TTTGTATGTAATTGTACTAT+GGG | - | 50839:37877-37896 | MS.gene066943:intergenic | 20.0% |
| !!! | CAATCTTTTGAGAAATAAAT+TGG | - | 50839:37710-37729 | MS.gene066943:intergenic | 20.0% |
| !!! | TTTTCAATGCAAAAATTCTT+TGG | - | 50839:37682-37701 | MS.gene066943:intergenic | 20.0% |
| ! | AAAATGGTTATACCAATTAC+AGG | - | 50839:38389-38408 | MS.gene066943:intergenic | 25.0% |
| ! | ACATAAAGTTCTTGACTTAT+AGG | - | 50839:39259-39278 | MS.gene066943:intergenic | 25.0% |
| ! | GAATGAGCATATTGATATTT+AGG | - | 50839:37606-37625 | MS.gene066943:intergenic | 25.0% |
| ! | GATTGATCTAGAAATTTGTA+AGG | - | 50839:37965-37984 | MS.gene066943:intergenic | 25.0% |
| ! | GATTGGATTGTAATGTTAAT+AGG | - | 50839:37933-37952 | MS.gene066943:intergenic | 25.0% |
| ! | TCAAAGGAAATATTGAATCT+TGG | - | 50839:39154-39173 | MS.gene066943:intergenic | 25.0% |
| ! | TTATTTGTTCTCACAAGTTA+GGG | + | 50839:37150-37169 | MS.gene066943:intron | 25.0% |
| ! | TTGAACTCGTTAGATTTAAA+AGG | - | 50839:37496-37515 | MS.gene066943:intergenic | 25.0% |
| ! | TTTATTTGTTCTCACAAGTT+AGG | + | 50839:37149-37168 | MS.gene066943:intron | 25.0% |
| ! | TTTGATTGATAAAGTAGCTT+CGG | + | 50839:39066-39085 | MS.gene066943:CDS | 25.0% |
| !! | GTTTGATACTTTGAAAACAA+AGG | + | 50839:38859-38878 | MS.gene066943:CDS | 25.0% |
| !! | TTTTCAACACAAAGTTTGTA+AGG | - | 50839:37537-37556 | MS.gene066943:intergenic | 25.0% |
| !!! | ACAAGTTTGTTTTTCACAAT+TGG | - | 50839:38166-38185 | MS.gene066943:intergenic | 25.0% |
| !!! | CTTTTCTTTGAGATTTTGAT+TGG | - | 50839:36818-36837 | MS.gene066943:intergenic | 25.0% |
| !!! | TACAATTGATACTGATTTGA+AGG | + | 50839:38688-38707 | MS.gene066943:intron | 25.0% |
| AAATGTAAATAGAGAACGCA+CGG | - | 50839:39015-39034 | None:intergenic | 30.0% | |
| AATAAACCTATCCAGCTAAT+TGG | - | 50839:38523-38542 | MS.gene066943:intergenic | 30.0% | |
| ACTCGTTAGATTTAACATGA+TGG | - | 50839:37435-37454 | MS.gene066943:intergenic | 30.0% | |
| ACTGTCTACAAAATATGACA+AGG | + | 50839:38353-38372 | MS.gene066943:intron | 30.0% | |
| ACTTGTGTATATATAGTGCA+AGG | + | 50839:38180-38199 | MS.gene066943:intron | 30.0% | |
| AGGTTTAATGTCTCAGAAAA+TGG | - | 50839:38405-38424 | MS.gene066943:intergenic | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | - | 50839:37076-37095 | MS.gene066943:intergenic | 30.0% | |
| AGTCAAGAACTTTATGTTTC+CGG | + | 50839:39262-39281 | MS.gene066943:CDS | 30.0% | |
| AGTCCATTATTGTGCTTTAA+AGG | - | 50839:37904-37923 | MS.gene066943:intergenic | 30.0% | |
| CTCTGATCAGAAACAAAAAA+GGG | - | 50839:39420-39439 | MS.gene066943:intergenic | 30.0% | |
| GAGAGAAGAAGTGAATTTAT+GGG | + | 50839:38721-38740 | MS.gene066943:CDS | 30.0% | |
| GCATTGCAAAATAAACCAAT+AGG | - | 50839:38461-38480 | MS.gene066943:intergenic | 30.0% | |
| GGATTGTAATGTTAATAGGT+AGG | - | 50839:37929-37948 | MS.gene066943:intergenic | 30.0% | |
| GTTGCTAAAGAAATTAGGAT+TGG | + | 50839:39189-39208 | MS.gene066943:CDS | 30.0% | |
| TATCTTAATATGTGCCCTAA+GGG | - | 50839:37659-37678 | MS.gene066943:intergenic | 30.0% | |
| TATGAAAGACAGCACAAAAA+CGG | - | 50839:37292-37311 | MS.gene066943:intergenic | 30.0% | |
| TCTCTGATCAGAAACAAAAA+AGG | - | 50839:39421-39440 | MS.gene066943:intergenic | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | + | 50839:39184-39203 | MS.gene066943:CDS | 30.0% | |
| TTATTCTTGCTGGTCATAAA+GGG | - | 50839:38926-38945 | MS.gene066943:intergenic | 30.0% | |
| TTCATTGAAGTAAACGAAGA+AGG | + | 50839:39301-39320 | MS.gene066943:CDS | 30.0% | |
| TTCTCAGTTGCTTGATTAAT+TGG | + | 50839:37569-37588 | MS.gene066943:intron | 30.0% | |
| TTGATTGGATAACAAGTGTT+TGG | - | 50839:36803-36822 | MS.gene066943:intergenic | 30.0% | |
| TTGTATTCAAAATGAGTCCA+AGG | - | 50839:38425-38444 | MS.gene066943:intergenic | 30.0% | |
| TTTATTCTTGCTGGTCATAA+AGG | - | 50839:38927-38946 | MS.gene066943:intergenic | 30.0% | |
| ! | AAACCTTAACATGTGCTATT+AGG | + | 50839:37766-37785 | MS.gene066943:intron | 30.0% |
| ! | AACCTTAACATGTGCTATTA+GGG | + | 50839:37767-37786 | MS.gene066943:intron | 30.0% |
| ! | AACTACAGTTTTCAAACAAG+TGG | - | 50839:38257-38276 | MS.gene066943:intergenic | 30.0% |
| ! | ATTTTTGAACAGACCATGAT+AGG | + | 50839:37404-37423 | MS.gene066943:intron | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | + | 50839:38884-38903 | MS.gene066943:CDS | 30.0% |
| !!! | ATTGGCTTTACCTTTTTCTA+TGG | + | 50839:39207-39226 | MS.gene066943:CDS | 30.0% |
| !!! | CATAAGTTAGTTTTCAGTGT+TGG | + | 50839:38098-38117 | MS.gene066943:intron | 30.0% |
| !!! | TTGGCTTTACCTTTTTCTAT+GGG | + | 50839:39208-39227 | MS.gene066943:CDS | 30.0% |
| !!! | TTTTCTGAGACATTAAACCT+TGG | + | 50839:38405-38424 | MS.gene066943:intron | 30.0% |
| AACCATACTCTTTGTTGGAA+AGG | + | 50839:39453-39472 | MS.gene066943:CDS | 35.0% | |
| AACCTTTCCAACAAAGAGTA+TGG | - | 50839:39458-39477 | MS.gene066943:intergenic | 35.0% | |
| AAGCGCTAAAGATTACCTAT+TGG | + | 50839:38443-38462 | MS.gene066943:intron | 35.0% | |
| AGCTAATTGGCAAGACATAT+AGG | - | 50839:38510-38529 | MS.gene066943:intergenic | 35.0% | |
| ATTCAAGATCTTCTTCCATG+CGG | + | 50839:38767-38786 | MS.gene066943:CDS | 35.0% | |
| CCATATACCAAAAAGATTGC+AGG | + | 50839:38035-38054 | MS.gene066943:intron | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | + | 50839:38989-39008 | MS.gene066943:CDS | 35.0% | |
| CGAGAGAAGAAGTGAATTTA+TGG | + | 50839:38720-38739 | MS.gene066943:CDS | 35.0% | |
| CTATGGGTTTAAGCTCAATA+TGG | - | 50839:37861-37880 | MS.gene066943:intergenic | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | - | 50839:38982-39001 | MS.gene066943:intergenic | 35.0% | |
| GATGAACTGTTTATTCTTGC+TGG | - | 50839:38936-38955 | MS.gene066943:intergenic | 35.0% | |
| GCAAATGCACTATACTTCAA+AGG | + | 50839:38821-38840 | MS.gene066943:CDS | 35.0% | |
| GGATCAATAAACCTAACTAC+TGG | + | 50839:38119-38138 | MS.gene066943:intron | 35.0% | |
| GTATCTTAATATGTGCCCTA+AGG | - | 50839:37660-37679 | MS.gene066943:intergenic | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | - | 50839:37072-37091 | MS.gene066943:intergenic | 35.0% | |
| TAATCAAGCAACTGAGAAAG+AGG | - | 50839:37567-37586 | MS.gene066943:intergenic | 35.0% | |
| TATATGTCTTGCCAATTAGC+TGG | + | 50839:38509-38528 | MS.gene066943:intron | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | + | 50839:39225-39244 | MS.gene066943:CDS | 35.0% | |
| TATTCTTGCTGGTCATAAAG+GGG | - | 50839:38925-38944 | MS.gene066943:intergenic | 35.0% | |
| TCAACACAAAGTTTGTAAGG+CGG | - | 50839:37534-37553 | MS.gene066943:intergenic | 35.0% | |
| TCTCACTTTATCCAGTAGTT+AGG | - | 50839:38133-38152 | MS.gene066943:intergenic | 35.0% | |
| TGATCAGAAACAAAAAAGGG+TGG | - | 50839:39417-39436 | MS.gene066943:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAT+GGG | + | 50839:39035-39054 | MS.gene066943:CDS | 35.0% | |
| TTGTAAGGGAGAAACATGAT+TGG | - | 50839:37950-37969 | MS.gene066943:intergenic | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+TGG | + | 50839:39034-39053 | MS.gene066943:CDS | 35.0% | |
| ! | AAGCCCTTTTGTCTTCTTTT+CGG | - | 50839:38747-38766 | MS.gene066943:intergenic | 35.0% |
| ! | ACTATACTTCAAAGGAGTGT+GGG | + | 50839:38829-38848 | MS.gene066943:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | + | 50839:38980-38999 | MS.gene066943:CDS | 35.0% |
| ! | GCAAAATGAAAGCATGGAAA+GGG | - | 50839:38072-38091 | MS.gene066943:intergenic | 35.0% |
| ! | GTTTTTGTGCTGTCTTTCAT+AGG | + | 50839:37291-37310 | MS.gene066943:intron | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | - | 50839:38992-39011 | MS.gene066943:intergenic | 35.0% |
| !! | CCTGCAATCTTTTTGGTATA+TGG | - | 50839:38038-38057 | MS.gene066943:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | - | 50839:39284-39303 | MS.gene066943:intergenic | 35.0% |
| !! | GTGCCTTTAAAGCACAATAA+TGG | + | 50839:37898-37917 | MS.gene066943:intron | 35.0% |
| !!! | GAGAGAAGTTGTTTTTGAGT+GGG | - | 50839:36907-36926 | MS.gene066943:intergenic | 35.0% |
| !!! | TTCGATGGTTTTAAAGTCCT+TGG | + | 50839:38962-38981 | MS.gene066943:CDS | 35.0% |
| AAGGTTGTCAATCCTCTTGA+TGG | + | 50839:39472-39491 | MS.gene066943:CDS | 40.0% | |
| AAGTCAAAGTAGGCAAGTTC+AGG | + | 50839:39125-39144 | MS.gene066943:CDS | 40.0% | |
| AGAAACTCACACACAACTTC+TGG | + | 50839:37223-37242 | MS.gene066943:intron | 40.0% | |
| AGGTTGTCAATCCTCTTGAT+GGG | + | 50839:39473-39492 | MS.gene066943:CDS | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | + | 50839:39448-39467 | MS.gene066943:CDS | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | + | 50839:38828-38847 | MS.gene066943:CDS | 40.0% | |
| CAGAAACAAAAAAGGGTGGT+CGG | - | 50839:39413-39432 | MS.gene066943:intergenic | 40.0% | |
| CAGTTCATCAGTTCTTTCGA+TGG | + | 50839:38947-38966 | MS.gene066943:CDS | 40.0% | |
| CATTGACGTAAGACAAGCAA+GGG | - | 50839:37017-37036 | MS.gene066943:intergenic | 40.0% | |
| CTCAGAAGCTTCAATCTCAA+AGG | - | 50839:39170-39189 | MS.gene066943:intergenic | 40.0% | |
| CTGATCAGAGAAGAGTTTAG+TGG | + | 50839:39430-39449 | MS.gene066943:CDS | 40.0% | |
| GGATAATTAGGGCCTGTAAT+TGG | + | 50839:38374-38393 | MS.gene066943:intron | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | - | 50839:39220-39239 | MS.gene066943:intergenic | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | + | 50839:38898-38917 | MS.gene066943:CDS | 40.0% | |
| TGCCCTAATAGCACATGTTA+AGG | - | 50839:37772-37791 | MS.gene066943:intergenic | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | - | 50839:37063-37082 | MS.gene066943:intergenic | 40.0% | |
| TTCAAGATCTTCTTCCATGC+GGG | + | 50839:38768-38787 | MS.gene066943:CDS | 40.0% | |
| TTGCTTCCATACACCACATA+TGG | - | 50839:38573-38592 | MS.gene066943:intergenic | 40.0% | |
| ! | AAATGCTAACTTGTGCCCTT+AGG | + | 50839:37641-37660 | MS.gene066943:intron | 40.0% |
| ! | AATGCTAACTTGTGCCCTTA+GGG | + | 50839:37642-37661 | MS.gene066943:intron | 40.0% |
| ! | AGAAACAAGGTGAGAGCATA+AGG | - | 50839:36965-36984 | MS.gene066943:intergenic | 40.0% |
| ! | AGCTTCGGATTCTGAGTTTT+TGG | + | 50839:39081-39100 | MS.gene066943:CDS | 40.0% |
| ! | ATGGTGATGCAGAATCTCAT+CGG | + | 50839:36736-36755 | MS.gene066943:CDS | 40.0% |
| ! | CGCAAAATGAAAGCATGGAA+AGG | - | 50839:38073-38092 | MS.gene066943:intergenic | 40.0% |
| ! | CTTGTTTCTTCTGTGCTCTT+CGG | + | 50839:36976-36995 | MS.gene066943:CDS | 40.0% |
| ! | GCATAAGGATTTGAGATCAC+CGG | - | 50839:36950-36969 | MS.gene066943:intergenic | 40.0% |
| ! | GCTTTACCTTTTTCTATGGG+AGG | + | 50839:39211-39230 | MS.gene066943:CDS | 40.0% |
| ! | GTCTGAACCTGCAATCTTTT+TGG | - | 50839:38045-38064 | MS.gene066943:intergenic | 40.0% |
| ! | TGCAGTTGATTTCGTCAACA+AGG | + | 50839:37116-37135 | MS.gene066943:CDS | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | - | 50839:36777-36796 | MS.gene066943:intergenic | 40.0% |
| ! | TTGTTTCTTCTGTGCTCTTC+GGG | + | 50839:36977-36996 | MS.gene066943:CDS | 40.0% |
| !! | CAAGTGTTTGGTGATGTTCA+TGG | - | 50839:36791-36810 | MS.gene066943:intergenic | 40.0% |
| !! | CATGATGGATCAACCTATCA+TGG | - | 50839:37420-37439 | MS.gene066943:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | - | 50839:38898-38917 | MS.gene066943:intergenic | 40.0% |
| !!! | GGAGAGAAGTTGTTTTTGAG+TGG | - | 50839:36908-36927 | MS.gene066943:intergenic | 40.0% |
| CACCACATATGGAGAGAGTT+AGG | - | 50839:38562-38581 | MS.gene066943:intergenic | 45.0% | |
| CACCTAACTCTCTCCATATG+TGG | + | 50839:38557-38576 | MS.gene066943:intron | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | - | 50839:37018-37037 | MS.gene066943:intergenic | 45.0% | |
| CCTCGTGAAGAAGTCAAAGT+AGG | + | 50839:39115-39134 | MS.gene066943:CDS | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | + | 50839:37015-37034 | MS.gene066943:CDS | 45.0% | |
| CTCTCTCCATATGTGGTGTA+TGG | + | 50839:38564-38583 | MS.gene066943:intron | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | + | 50839:39228-39247 | MS.gene066943:CDS | 45.0% | |
| GGGCCGAAAAGAAGACAAAA+GGG | + | 50839:38741-38760 | MS.gene066943:CDS | 45.0% | |
| GGTGATGTTCATGGAAACGT+TGG | - | 50839:36782-36801 | MS.gene066943:intergenic | 45.0% | |
| GTAGTTAGTAGCACATGCGA+GGG | + | 50839:38271-38290 | MS.gene066943:intron | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | + | 50839:37023-37042 | MS.gene066943:CDS | 45.0% | |
| GTCTTGCCAATTAGCTGGAT+AGG | + | 50839:38514-38533 | MS.gene066943:intron | 45.0% | |
| TCGCACGCAAAATGAAAGCA+TGG | - | 50839:38078-38097 | MS.gene066943:intergenic | 45.0% | |
| TGGGCCGAAAAGAAGACAAA+AGG | + | 50839:38740-38759 | MS.gene066943:CDS | 45.0% | |
| TGTAGTTAGTAGCACATGCG+AGG | + | 50839:38270-38289 | MS.gene066943:intron | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | + | 50839:37022-37041 | MS.gene066943:CDS | 45.0% | |
| TGTTTCTTCTGTGCTCTTCG+GGG | + | 50839:36978-36997 | MS.gene066943:CDS | 45.0% | |
| TTTCTCCAGTCTGAATCCAC+CGG | + | 50839:36928-36947 | MS.gene066943:CDS | 45.0% | |
| ! | CCTACTTTGACTTCTTCACG+AGG | - | 50839:39118-39137 | MS.gene066943:intergenic | 45.0% |
| ! | CGAAGAGCACAGAAGAAACA+AGG | - | 50839:36978-36997 | MS.gene066943:intergenic | 45.0% |
| ! | TAAGGATTTGAGATCACCGG+TGG | - | 50839:36947-36966 | MS.gene066943:intergenic | 45.0% |
| !! | GACAACCCATCTTTTTCGTC+AGG | - | 50839:39043-39062 | MS.gene066943:intergenic | 45.0% |
| !!! | TTGTTTTTGAGTGGGACCCT+CGG | - | 50839:36899-36918 | MS.gene066943:intergenic | 45.0% |
| !! | ATTATTATAGAAATATAATA+TGG | + | 50839:37335-37354 | MS.gene066943:intron | 5.0% |
| CGGCTACAAAGTCGATTGGA+GGG | - | 50839:39393-39412 | MS.gene066943:intergenic | 50.0% | |
| GGTAGCGATCATACTGAGCA+CGG | - | 50839:36872-36891 | MS.gene066943:intergenic | 50.0% | |
| GGTCAGTTCACAGCTTAACG+AGG | + | 50839:38789-38808 | MS.gene066943:CDS | 50.0% | |
| GTGCTCAGTATGATCGCTAC+CGG | + | 50839:36871-36890 | MS.gene066943:CDS | 50.0% | |
| TCGGCTACAAAGTCGATTGG+AGG | - | 50839:39394-39413 | MS.gene066943:intergenic | 50.0% | |
| TGCTCAGTATGATCGCTACC+GGG | + | 50839:36872-36891 | MS.gene066943:CDS | 50.0% | |
| TGGTCGGCTACAAAGTCGAT+TGG | - | 50839:39397-39416 | MS.gene066943:intergenic | 50.0% | |
| ! | AGAAGGTACGAAAGCTGCAG+CGG | + | 50839:39318-39337 | MS.gene066943:CDS | 50.0% |
| ! | AGCACGGTGTTGAGCGATAA+TGG | - | 50839:36856-36875 | MS.gene066943:intergenic | 50.0% |
| ! | CACAACTTCTGGTGTTAGCG+TGG | + | 50839:37234-37253 | MS.gene066943:intron | 50.0% |
| ! | GGTGGATTCAGACTGGAGAA+AGG | - | 50839:36929-36948 | MS.gene066943:intergenic | 50.0% |
| AAGCTGTGAACTGACCCGCA+TGG | - | 50839:38785-38804 | MS.gene066943:intergenic | 55.0% | |
| AAGTCGATTGGAGGGAGCAG+AGG | - | 50839:39385-39404 | MS.gene066943:intergenic | 55.0% | |
| ACGCGTGCATGCCAAGCTAA+CGG | - | 50839:39347-39366 | MS.gene066943:intergenic | 55.0% | |
| AGTCGATTGGAGGGAGCAGA+GGG | - | 50839:39384-39403 | MS.gene066943:intergenic | 55.0% | |
| GTAAGACAAGCAAGGGCCAC+TGG | - | 50839:37010-37029 | MS.gene066943:intergenic | 55.0% | |
| ! | GATCACCGGTGGATTCAGAC+TGG | - | 50839:36936-36955 | MS.gene066943:intergenic | 55.0% |
| ATGATCGCTACCGGGTCCGA+GGG | + | 50839:36880-36899 | MS.gene066943:CDS | 60.0% | |
| GCATGCACGCGTTCTCGGTA+CGG | + | 50839:39355-39374 | MS.gene066943:CDS | 60.0% | |
| GCTTGGCATGCACGCGTTCT+CGG | + | 50839:39350-39369 | MS.gene066943:CDS | 60.0% | |
| GTCGATTGGAGGGAGCAGAG+GGG | - | 50839:39383-39402 | MS.gene066943:intergenic | 60.0% | |
| TATGATCGCTACCGGGTCCG+AGG | + | 50839:36879-36898 | MS.gene066943:CDS | 60.0% | |
| TGCAGCGGTGACCGTTAGCT+TGG | + | 50839:39333-39352 | MS.gene066943:CDS | 60.0% | |
| TTGAGTGGGACCCTCGGACC+CGG | - | 50839:36893-36912 | MS.gene066943:intergenic | 65.0% | |
| CTCTTCGGGGCTCGCACCAG+TGG | + | 50839:36991-37010 | MS.gene066943:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50839 | gene | 36736 | 39498 | 36736 | ID=MS.gene066943 |
| 50839 | mRNA | 36736 | 39498 | 36736 | ID=MS.gene066943.t1;Parent=MS.gene066943 |
| 50839 | exon | 36736 | 37137 | 36736 | ID=MS.gene066943.t1.exon1;Parent=MS.gene066943.t1 |
| 50839 | CDS | 36736 | 37137 | 36736 | ID=cds.MS.gene066943.t1;Parent=MS.gene066943.t1 |
| 50839 | exon | 38710 | 39498 | 38710 | ID=MS.gene066943.t1.exon2;Parent=MS.gene066943.t1 |
| 50839 | CDS | 38710 | 39498 | 38710 | ID=cds.MS.gene066943.t1;Parent=MS.gene066943.t1 |
| Gene Sequence |
| Protein sequence |
