Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066944.t1 | XP_013448489.1 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 2.50E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066944.t1 | Q9S7T8 | 50.9 | 391 | 186 | 5 | 7 | 394 | 3 | 390 | 3.7e-104 | 379.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066944.t1 | Q2HSM8 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 1.8e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066944 | MS.gene045585 | PPI |
| MS.gene066944 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene066944 | PPI |
| MS.gene065945 | MS.gene066944 | PPI |
| MS.gene031697 | MS.gene066944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066944.t1 | MTR_7g451890 | 89.169 | 397 | 42 | 1 | 1 | 396 | 6 | 402 | 0.0 | 689 |
| MS.gene066944.t1 | MTR_7g047780 | 87.909 | 397 | 47 | 1 | 1 | 396 | 6 | 402 | 0.0 | 676 |
| MS.gene066944.t1 | MTR_7g050750 | 85.354 | 396 | 57 | 1 | 2 | 396 | 1 | 396 | 0.0 | 660 |
| MS.gene066944.t1 | MTR_7g050810 | 83.503 | 394 | 64 | 1 | 4 | 396 | 11 | 404 | 0.0 | 641 |
| MS.gene066944.t1 | MTR_3g101180 | 64.987 | 397 | 132 | 3 | 5 | 394 | 2 | 398 | 1.06e-176 | 498 |
| MS.gene066944.t1 | MTR_8g461160 | 66.076 | 395 | 127 | 4 | 5 | 395 | 2 | 393 | 8.67e-175 | 493 |
| MS.gene066944.t1 | MTR_7g050830 | 78.438 | 320 | 37 | 3 | 4 | 302 | 11 | 319 | 8.93e-173 | 485 |
| MS.gene066944.t1 | MTR_3g101010 | 63.239 | 389 | 138 | 3 | 9 | 396 | 5 | 389 | 2.64e-168 | 476 |
| MS.gene066944.t1 | MTR_3g018740 | 63.104 | 393 | 133 | 6 | 7 | 395 | 3 | 387 | 1.76e-165 | 469 |
| MS.gene066944.t1 | MTR_3g101130 | 61.893 | 391 | 139 | 4 | 9 | 396 | 6 | 389 | 1.56e-163 | 464 |
| MS.gene066944.t1 | MTR_4g045707 | 61.697 | 389 | 142 | 4 | 9 | 396 | 6 | 388 | 2.89e-163 | 463 |
| MS.gene066944.t1 | MTR_8g027395 | 59.335 | 391 | 150 | 3 | 7 | 396 | 15 | 397 | 1.80e-158 | 452 |
| MS.gene066944.t1 | MTR_3g101030 | 57.855 | 401 | 144 | 5 | 15 | 396 | 35 | 429 | 3.47e-153 | 439 |
| MS.gene066944.t1 | MTR_3g048000 | 57.364 | 387 | 139 | 5 | 10 | 394 | 28 | 390 | 3.07e-149 | 428 |
| MS.gene066944.t1 | MTR_4g088525 | 60.055 | 363 | 138 | 2 | 33 | 394 | 11 | 367 | 1.86e-147 | 422 |
| MS.gene066944.t1 | MTR_2g046030 | 56.489 | 393 | 159 | 5 | 7 | 395 | 3 | 387 | 1.10e-146 | 421 |
| MS.gene066944.t1 | MTR_8g027420 | 56.266 | 391 | 151 | 4 | 7 | 396 | 4 | 375 | 2.48e-146 | 420 |
| MS.gene066944.t1 | MTR_2g045980 | 55.725 | 393 | 162 | 5 | 7 | 395 | 3 | 387 | 1.23e-144 | 416 |
| MS.gene066944.t1 | MTR_3g101050 | 57.841 | 389 | 132 | 6 | 13 | 394 | 33 | 396 | 2.31e-141 | 408 |
| MS.gene066944.t1 | MTR_3g101200 | 56.997 | 393 | 141 | 6 | 3 | 394 | 25 | 390 | 3.40e-141 | 407 |
| MS.gene066944.t1 | MTR_3g015620 | 53.015 | 398 | 152 | 7 | 4 | 395 | 11 | 379 | 4.47e-133 | 386 |
| MS.gene066944.t1 | MTR_4g088535 | 54.948 | 384 | 148 | 4 | 9 | 391 | 7 | 366 | 1.13e-132 | 385 |
| MS.gene066944.t1 | MTR_3g102920 | 54.663 | 386 | 132 | 7 | 13 | 394 | 62 | 408 | 7.77e-130 | 379 |
| MS.gene066944.t1 | MTR_3g101190 | 51.337 | 374 | 116 | 3 | 24 | 396 | 4 | 312 | 2.33e-123 | 359 |
| MS.gene066944.t1 | MTR_3g100995 | 62.162 | 259 | 87 | 3 | 141 | 396 | 14 | 264 | 1.16e-112 | 330 |
| MS.gene066944.t1 | MTR_3g018747 | 60.076 | 263 | 87 | 3 | 134 | 395 | 9 | 254 | 3.14e-103 | 306 |
| MS.gene066944.t1 | MTR_3g015760 | 59.316 | 263 | 101 | 3 | 134 | 395 | 23 | 280 | 4.91e-97 | 291 |
| MS.gene066944.t1 | MTR_3g100010 | 48.889 | 315 | 112 | 4 | 31 | 311 | 37 | 336 | 4.89e-93 | 283 |
| MS.gene066944.t1 | MTR_3g111160 | 60.268 | 224 | 83 | 3 | 175 | 396 | 1 | 220 | 1.02e-82 | 252 |
| MS.gene066944.t1 | MTR_3g100520 | 59.375 | 224 | 74 | 4 | 175 | 396 | 1 | 209 | 5.87e-82 | 250 |
| MS.gene066944.t1 | MTR_3g114310 | 40.157 | 381 | 203 | 10 | 33 | 396 | 38 | 410 | 7.17e-81 | 254 |
| MS.gene066944.t1 | MTR_3g101110 | 56.962 | 237 | 72 | 4 | 137 | 370 | 71 | 280 | 3.56e-77 | 240 |
| MS.gene066944.t1 | MTR_2g046410 | 56.808 | 213 | 84 | 2 | 187 | 395 | 140 | 348 | 1.33e-74 | 236 |
| MS.gene066944.t1 | MTR_3g099970 | 59.694 | 196 | 62 | 2 | 134 | 329 | 20 | 198 | 1.12e-73 | 228 |
| MS.gene066944.t1 | MTR_3g101150 | 64.557 | 158 | 52 | 2 | 240 | 394 | 1 | 157 | 1.04e-65 | 206 |
| MS.gene066944.t1 | MTR_3g101020 | 52.083 | 192 | 57 | 3 | 208 | 396 | 1 | 160 | 1.74e-58 | 188 |
| MS.gene066944.t1 | MTR_3g102870 | 53.939 | 165 | 76 | 0 | 197 | 361 | 1 | 165 | 4.91e-54 | 177 |
| MS.gene066944.t1 | MTR_3g111150 | 49.143 | 175 | 64 | 3 | 12 | 186 | 2 | 151 | 2.43e-49 | 164 |
| MS.gene066944.t1 | MTR_3g100990 | 55.118 | 127 | 54 | 2 | 9 | 134 | 5 | 129 | 6.45e-33 | 129 |
| MS.gene066944.t1 | MTR_3g101140 | 48.571 | 105 | 53 | 1 | 292 | 396 | 13 | 116 | 3.43e-21 | 88.6 |
| MS.gene066944.t1 | MTR_4g093550 | 47.126 | 87 | 44 | 1 | 7 | 93 | 4 | 88 | 4.30e-14 | 68.2 |
| MS.gene066944.t1 | MTR_6g046890 | 56.250 | 64 | 28 | 0 | 26 | 89 | 14 | 77 | 1.20e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066944.t1 | AT1G47710 | 51.969 | 381 | 177 | 5 | 17 | 394 | 13 | 390 | 2.04e-132 | 385 |
| MS.gene066944.t1 | AT1G47710 | 51.969 | 381 | 177 | 5 | 17 | 394 | 40 | 417 | 1.31e-131 | 384 |
| MS.gene066944.t1 | AT2G26390 | 45.178 | 394 | 199 | 6 | 7 | 393 | 3 | 386 | 3.25e-115 | 341 |
| MS.gene066944.t1 | AT2G25240 | 46.547 | 391 | 194 | 7 | 7 | 393 | 3 | 382 | 1.24e-113 | 337 |
| MS.gene066944.t1 | AT3G45220 | 44.584 | 397 | 201 | 7 | 7 | 393 | 3 | 390 | 5.91e-113 | 336 |
| MS.gene066944.t1 | AT1G62170 | 44.557 | 395 | 184 | 7 | 7 | 393 | 64 | 431 | 4.49e-106 | 320 |
| MS.gene066944.t1 | AT1G64030 | 44.162 | 394 | 188 | 9 | 7 | 393 | 3 | 371 | 8.15e-100 | 302 |
| MS.gene066944.t1 | AT1G62170 | 41.121 | 428 | 184 | 8 | 7 | 393 | 64 | 464 | 8.82e-99 | 302 |
| MS.gene066944.t1 | AT2G14540 | 47.139 | 367 | 165 | 7 | 32 | 393 | 55 | 397 | 2.12e-98 | 299 |
| MS.gene066944.t1 | AT2G35580 | 44.262 | 366 | 166 | 10 | 39 | 393 | 33 | 371 | 1.14e-92 | 283 |
| MS.gene066944.t1 | AT1G64010 | 44.545 | 220 | 96 | 4 | 175 | 393 | 1 | 195 | 1.10e-59 | 192 |
| MS.gene066944.t1 | AT1G64010 | 44.390 | 205 | 88 | 4 | 190 | 393 | 2 | 181 | 5.68e-53 | 174 |
| MS.gene066944.t1 | AT1G63280 | 57.627 | 118 | 46 | 2 | 131 | 246 | 5 | 120 | 2.21e-36 | 129 |
| MS.gene066944.t1 | AT1G62160 | 38.798 | 183 | 85 | 3 | 213 | 393 | 61 | 218 | 1.16e-34 | 128 |
| MS.gene066944.t1 | AT1G51330 | 50.893 | 112 | 52 | 3 | 132 | 240 | 29 | 140 | 3.22e-25 | 102 |
| MS.gene066944.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 17 | 124 | 13 | 120 | 9.53e-12 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTTTTAGTAG+AGG | + | 50836:3672-3691 | MS.gene066944:intron | 10.0% |
| !!! | AAAACTTAAATTTTTCTGTT+TGG | - | 50836:4489-4508 | MS.gene066944:intergenic | 15.0% |
| !!! | ATTAGTAACAGTTTATTTTA+GGG | - | 50836:4288-4307 | MS.gene066944:intergenic | 15.0% |
| !!! | TATTAGTAACAGTTTATTTT+AGG | - | 50836:4289-4308 | MS.gene066944:intergenic | 15.0% |
| !! | AAAAATCAATAATGTGACTT+TGG | + | 50836:4702-4721 | MS.gene066944:intron | 20.0% |
| !! | AAAATATGACAAGGATAATT+AGG | + | 50836:4842-4861 | MS.gene066944:intron | 20.0% |
| !! | AAATATGACAAGGATAATTA+GGG | + | 50836:4843-4862 | MS.gene066944:intron | 20.0% |
| !! | ATTGATCTAGAAATTTGTAA+GGG | - | 50836:4444-4463 | MS.gene066944:intergenic | 20.0% |
| !! | ATTTGTATGTAATTGTACTA+TGG | - | 50836:4358-4377 | MS.gene066944:intergenic | 20.0% |
| !! | GAAACAAAGTTATATGTAAA+AGG | - | 50836:4467-4486 | MS.gene066944:intergenic | 20.0% |
| !! | GCTCATTCTATTAAAATAAT+AGG | + | 50836:3942-3961 | MS.gene066944:intron | 20.0% |
| !! | TTTGTATGTAATTGTACTAT+GGG | - | 50836:4357-4376 | MS.gene066944:intergenic | 20.0% |
| !!! | CAATCTTTTGAGAAATAAAT+TGG | - | 50836:4190-4209 | MS.gene066944:intergenic | 20.0% |
| !!! | TTTTCAATGCAAAAATTCTT+TGG | - | 50836:4162-4181 | MS.gene066944:intergenic | 20.0% |
| ! | AAAATGGTTATACCAATTAC+AGG | - | 50836:4869-4888 | MS.gene066944:intergenic | 25.0% |
| ! | ACATAAAGTTCTTGACTTAT+AGG | - | 50836:5739-5758 | MS.gene066944:intergenic | 25.0% |
| ! | GAATGAGCATATTGATATTT+AGG | - | 50836:4086-4105 | MS.gene066944:intergenic | 25.0% |
| ! | GATTGATCTAGAAATTTGTA+AGG | - | 50836:4445-4464 | MS.gene066944:intergenic | 25.0% |
| ! | GATTGGATTGTAATGTTAAT+AGG | - | 50836:4413-4432 | MS.gene066944:intergenic | 25.0% |
| ! | TCAAAGGAAATATTGAATCT+TGG | - | 50836:5634-5653 | MS.gene066944:intergenic | 25.0% |
| ! | TTATTTGTTCTCACAAGTTA+GGG | + | 50836:3630-3649 | MS.gene066944:intron | 25.0% |
| ! | TTGAACTCGTTAGATTTAAA+AGG | - | 50836:3976-3995 | MS.gene066944:intergenic | 25.0% |
| ! | TTTATTTGTTCTCACAAGTT+AGG | + | 50836:3629-3648 | MS.gene066944:intron | 25.0% |
| ! | TTTGATTGATAAAGTAGCTT+CGG | + | 50836:5546-5565 | MS.gene066944:CDS | 25.0% |
| !! | GTTTGATACTTTGAAAACAA+AGG | + | 50836:5339-5358 | MS.gene066944:CDS | 25.0% |
| !! | TTTTCAACACAAAGTTTGTA+AGG | - | 50836:4017-4036 | MS.gene066944:intergenic | 25.0% |
| !!! | ACAAGTTTGTTTTTCACAAT+TGG | - | 50836:4646-4665 | MS.gene066944:intergenic | 25.0% |
| !!! | CTTTTCTTTGAGATTTTGAT+TGG | - | 50836:3298-3317 | MS.gene066944:intergenic | 25.0% |
| !!! | TACAATTGATACTGATTTGA+AGG | + | 50836:5168-5187 | MS.gene066944:intron | 25.0% |
| AAATGTAAATAGAGAACGCA+CGG | - | 50836:5495-5514 | MS.gene066943:intergenic | 30.0% | |
| AATAAACCTATCCAGCTAAT+TGG | - | 50836:5003-5022 | MS.gene066944:intergenic | 30.0% | |
| ACTCGTTAGATTTAACATGA+TGG | - | 50836:3915-3934 | MS.gene066944:intergenic | 30.0% | |
| ACTGTCTACAAAATATGACA+AGG | + | 50836:4833-4852 | MS.gene066944:intron | 30.0% | |
| ACTTGTGTATATATAGTGCA+AGG | + | 50836:4660-4679 | MS.gene066944:intron | 30.0% | |
| AGGTTTAATGTCTCAGAAAA+TGG | - | 50836:4885-4904 | MS.gene066944:intergenic | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | - | 50836:3556-3575 | MS.gene066944:intergenic | 30.0% | |
| AGTCAAGAACTTTATGTTTC+CGG | + | 50836:5742-5761 | MS.gene066944:CDS | 30.0% | |
| AGTCCATTATTGTGCTTTAA+AGG | - | 50836:4384-4403 | MS.gene066944:intergenic | 30.0% | |
| CTCTGATCAGAAACAAAAAA+GGG | - | 50836:5900-5919 | MS.gene066944:intergenic | 30.0% | |
| GAGAGAAGAAGTGAATTTAT+GGG | + | 50836:5201-5220 | MS.gene066944:CDS | 30.0% | |
| GCATTGCAAAATAAACCAAT+AGG | - | 50836:4941-4960 | MS.gene066944:intergenic | 30.0% | |
| GGATTGTAATGTTAATAGGT+AGG | - | 50836:4409-4428 | MS.gene066944:intergenic | 30.0% | |
| GTTGCTAAAGAAATTAGGAT+TGG | + | 50836:5669-5688 | MS.gene066944:CDS | 30.0% | |
| TATCTTAATATGTGCCCTAA+GGG | - | 50836:4139-4158 | MS.gene066944:intergenic | 30.0% | |
| TATGAAAGACAGCACAAAAA+CGG | - | 50836:3772-3791 | MS.gene066944:intergenic | 30.0% | |
| TCTCTGATCAGAAACAAAAA+AGG | - | 50836:5901-5920 | MS.gene066944:intergenic | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | + | 50836:5664-5683 | MS.gene066944:CDS | 30.0% | |
| TTATTCTTGCTGGTCATAAA+GGG | - | 50836:5406-5425 | MS.gene066944:intergenic | 30.0% | |
| TTCATTGAAGTAAACGAAGA+AGG | + | 50836:5781-5800 | MS.gene066944:CDS | 30.0% | |
| TTCTCAGTTGCTTGATTAAT+TGG | + | 50836:4049-4068 | MS.gene066944:intron | 30.0% | |
| TTGATTGGATAACAAGTGTT+TGG | - | 50836:3283-3302 | MS.gene066944:intergenic | 30.0% | |
| TTGTATTCAAAATGAGTCCA+AGG | - | 50836:4905-4924 | MS.gene066944:intergenic | 30.0% | |
| TTTATTCTTGCTGGTCATAA+AGG | - | 50836:5407-5426 | MS.gene066944:intergenic | 30.0% | |
| ! | AAACCTTAACATGTGCTATT+AGG | + | 50836:4246-4265 | MS.gene066944:intron | 30.0% |
| ! | AACCTTAACATGTGCTATTA+GGG | + | 50836:4247-4266 | MS.gene066944:intron | 30.0% |
| ! | AACTACAGTTTTCAAACAAG+TGG | - | 50836:4737-4756 | MS.gene066944:intergenic | 30.0% |
| ! | ATTTTTGAACAGACCATGAT+AGG | + | 50836:3884-3903 | MS.gene066944:intron | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | + | 50836:5364-5383 | MS.gene066944:CDS | 30.0% |
| !!! | ATTGGCTTTACCTTTTTCTA+TGG | + | 50836:5687-5706 | MS.gene066944:CDS | 30.0% |
| !!! | CATAAGTTAGTTTTCAGTGT+TGG | + | 50836:4578-4597 | MS.gene066944:intron | 30.0% |
| !!! | TTGGCTTTACCTTTTTCTAT+GGG | + | 50836:5688-5707 | MS.gene066944:CDS | 30.0% |
| !!! | TTTTCTGAGACATTAAACCT+TGG | + | 50836:4885-4904 | MS.gene066944:intron | 30.0% |
| AACCATACTCTTTGTTGGAA+AGG | + | 50836:5933-5952 | MS.gene066944:CDS | 35.0% | |
| AACCTTTCCAACAAAGAGTA+TGG | - | 50836:5938-5957 | MS.gene066944:intergenic | 35.0% | |
| AAGCGCTAAAGATTACCTAT+TGG | + | 50836:4923-4942 | MS.gene066944:intron | 35.0% | |
| AGCTAATTGGCAAGACATAT+AGG | - | 50836:4990-5009 | MS.gene066944:intergenic | 35.0% | |
| ATTCAAGATCTTCTTCCATG+CGG | + | 50836:5247-5266 | MS.gene066944:CDS | 35.0% | |
| CCATATACCAAAAAGATTGC+AGG | + | 50836:4515-4534 | MS.gene066944:intron | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | + | 50836:5469-5488 | MS.gene066944:CDS | 35.0% | |
| CGAGAGAAGAAGTGAATTTA+TGG | + | 50836:5200-5219 | MS.gene066944:CDS | 35.0% | |
| CTATGGGTTTAAGCTCAATA+TGG | - | 50836:4341-4360 | MS.gene066944:intergenic | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | - | 50836:5462-5481 | MS.gene066944:intergenic | 35.0% | |
| GATGAACTGTTTATTCTTGC+TGG | - | 50836:5416-5435 | MS.gene066944:intergenic | 35.0% | |
| GCAAATGCACTATACTTCAA+AGG | + | 50836:5301-5320 | MS.gene066944:CDS | 35.0% | |
| GGATCAATAAACCTAACTAC+TGG | + | 50836:4599-4618 | MS.gene066944:intron | 35.0% | |
| GTATCTTAATATGTGCCCTA+AGG | - | 50836:4140-4159 | MS.gene066944:intergenic | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | - | 50836:3552-3571 | MS.gene066944:intergenic | 35.0% | |
| TAATCAAGCAACTGAGAAAG+AGG | - | 50836:4047-4066 | MS.gene066944:intergenic | 35.0% | |
| TATATGTCTTGCCAATTAGC+TGG | + | 50836:4989-5008 | MS.gene066944:intron | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | + | 50836:5705-5724 | MS.gene066944:CDS | 35.0% | |
| TATTCTTGCTGGTCATAAAG+GGG | - | 50836:5405-5424 | MS.gene066944:intergenic | 35.0% | |
| TCAACACAAAGTTTGTAAGG+CGG | - | 50836:4014-4033 | MS.gene066944:intergenic | 35.0% | |
| TCTCACTTTATCCAGTAGTT+AGG | - | 50836:4613-4632 | MS.gene066944:intergenic | 35.0% | |
| TGATCAGAAACAAAAAAGGG+TGG | - | 50836:5897-5916 | MS.gene066944:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAT+GGG | + | 50836:5515-5534 | MS.gene066944:CDS | 35.0% | |
| TTGTAAGGGAGAAACATGAT+TGG | - | 50836:4430-4449 | MS.gene066944:intergenic | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+TGG | + | 50836:5514-5533 | MS.gene066944:CDS | 35.0% | |
| ! | AAGCCCTTTTGTCTTCTTTT+CGG | - | 50836:5227-5246 | MS.gene066944:intergenic | 35.0% |
| ! | ACTATACTTCAAAGGAGTGT+GGG | + | 50836:5309-5328 | MS.gene066944:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | + | 50836:5460-5479 | MS.gene066944:CDS | 35.0% |
| ! | GCAAAATGAAAGCATGGAAA+GGG | - | 50836:4552-4571 | MS.gene066944:intergenic | 35.0% |
| ! | GTTTTTGTGCTGTCTTTCAT+AGG | + | 50836:3771-3790 | MS.gene066944:intron | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | - | 50836:5472-5491 | MS.gene066944:intergenic | 35.0% |
| !! | CCTGCAATCTTTTTGGTATA+TGG | - | 50836:4518-4537 | MS.gene066944:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | - | 50836:5764-5783 | MS.gene066944:intergenic | 35.0% |
| !! | GTGCCTTTAAAGCACAATAA+TGG | + | 50836:4378-4397 | MS.gene066944:intron | 35.0% |
| !!! | GAGAGAAGTTGTTTTTGAGT+GGG | - | 50836:3387-3406 | MS.gene066944:intergenic | 35.0% |
| !!! | TTCGATGGTTTTAAAGTCCT+TGG | + | 50836:5442-5461 | MS.gene066944:CDS | 35.0% |
| AAGGTTGTCAATCCTCTTGA+TGG | + | 50836:5952-5971 | MS.gene066944:CDS | 40.0% | |
| AAGTCAAAGTAGGCAAGTTC+AGG | + | 50836:5605-5624 | MS.gene066944:CDS | 40.0% | |
| AGAAACTCACACACAACTTC+TGG | + | 50836:3703-3722 | MS.gene066944:intron | 40.0% | |
| AGGTTGTCAATCCTCTTGAT+GGG | + | 50836:5953-5972 | MS.gene066944:CDS | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | + | 50836:5928-5947 | MS.gene066944:CDS | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | + | 50836:5308-5327 | MS.gene066944:CDS | 40.0% | |
| CAGAAACAAAAAAGGGTGGT+CGG | - | 50836:5893-5912 | MS.gene066944:intergenic | 40.0% | |
| CAGTTCATCAGTTCTTTCGA+TGG | + | 50836:5427-5446 | MS.gene066944:CDS | 40.0% | |
| CATTGACGTAAGACAAGCAA+GGG | - | 50836:3497-3516 | MS.gene066944:intergenic | 40.0% | |
| CTCAGAAGCTTCAATCTCAA+AGG | - | 50836:5650-5669 | MS.gene066944:intergenic | 40.0% | |
| CTGATCAGAGAAGAGTTTAG+TGG | + | 50836:5910-5929 | MS.gene066944:CDS | 40.0% | |
| GGATAATTAGGGCCTGTAAT+TGG | + | 50836:4854-4873 | MS.gene066944:intron | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | - | 50836:5700-5719 | MS.gene066944:intergenic | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | + | 50836:5378-5397 | MS.gene066944:CDS | 40.0% | |
| TGCCCTAATAGCACATGTTA+AGG | - | 50836:4252-4271 | MS.gene066944:intergenic | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | - | 50836:3543-3562 | MS.gene066944:intergenic | 40.0% | |
| TTCAAGATCTTCTTCCATGC+GGG | + | 50836:5248-5267 | MS.gene066944:CDS | 40.0% | |
| TTGCTTCCATACACCACATA+TGG | - | 50836:5053-5072 | MS.gene066944:intergenic | 40.0% | |
| ! | AAATGCTAACTTGTGCCCTT+AGG | + | 50836:4121-4140 | MS.gene066944:intron | 40.0% |
| ! | AATGCTAACTTGTGCCCTTA+GGG | + | 50836:4122-4141 | MS.gene066944:intron | 40.0% |
| ! | AGAAACAAGGTGAGAGCATA+AGG | - | 50836:3445-3464 | MS.gene066944:intergenic | 40.0% |
| ! | AGCTTCGGATTCTGAGTTTT+TGG | + | 50836:5561-5580 | MS.gene066944:CDS | 40.0% |
| ! | ATGGTGATGCAGAATCTCAT+CGG | + | 50836:3216-3235 | MS.gene066944:CDS | 40.0% |
| ! | CGCAAAATGAAAGCATGGAA+AGG | - | 50836:4553-4572 | MS.gene066944:intergenic | 40.0% |
| ! | CTTGTTTCTTCTGTGCTCTT+CGG | + | 50836:3456-3475 | MS.gene066944:CDS | 40.0% |
| ! | GCATAAGGATTTGAGATCAC+CGG | - | 50836:3430-3449 | MS.gene066944:intergenic | 40.0% |
| ! | GCTTTACCTTTTTCTATGGG+AGG | + | 50836:5691-5710 | MS.gene066944:CDS | 40.0% |
| ! | GTCTGAACCTGCAATCTTTT+TGG | - | 50836:4525-4544 | MS.gene066944:intergenic | 40.0% |
| ! | TGCAGTTGATTTCGTCAACA+AGG | + | 50836:3596-3615 | MS.gene066944:CDS | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | - | 50836:3257-3276 | MS.gene066944:intergenic | 40.0% |
| ! | TTGTTTCTTCTGTGCTCTTC+GGG | + | 50836:3457-3476 | MS.gene066944:CDS | 40.0% |
| !! | CAAGTGTTTGGTGATGTTCA+TGG | - | 50836:3271-3290 | MS.gene066944:intergenic | 40.0% |
| !! | CATGATGGATCAACCTATCA+TGG | - | 50836:3900-3919 | MS.gene066944:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | - | 50836:5378-5397 | MS.gene066944:intergenic | 40.0% |
| !!! | GGAGAGAAGTTGTTTTTGAG+TGG | - | 50836:3388-3407 | MS.gene066944:intergenic | 40.0% |
| CACCACATATGGAGAGAGTT+AGG | - | 50836:5042-5061 | MS.gene066944:intergenic | 45.0% | |
| CACCTAACTCTCTCCATATG+TGG | + | 50836:5037-5056 | MS.gene066944:intron | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | - | 50836:3498-3517 | MS.gene066944:intergenic | 45.0% | |
| CCTCGTGAAGAAGTCAAAGT+AGG | + | 50836:5595-5614 | MS.gene066944:CDS | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | + | 50836:3495-3514 | MS.gene066944:CDS | 45.0% | |
| CTCTCTCCATATGTGGTGTA+TGG | + | 50836:5044-5063 | MS.gene066944:intron | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | + | 50836:5708-5727 | MS.gene066944:CDS | 45.0% | |
| GGGCCGAAAAGAAGACAAAA+GGG | + | 50836:5221-5240 | MS.gene066944:CDS | 45.0% | |
| GGTGATGTTCATGGAAACGT+TGG | - | 50836:3262-3281 | MS.gene066944:intergenic | 45.0% | |
| GTAGTTAGTAGCACATGCGA+GGG | + | 50836:4751-4770 | MS.gene066944:intron | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | + | 50836:3503-3522 | MS.gene066944:CDS | 45.0% | |
| GTCTTGCCAATTAGCTGGAT+AGG | + | 50836:4994-5013 | MS.gene066944:intron | 45.0% | |
| TCGCACGCAAAATGAAAGCA+TGG | - | 50836:4558-4577 | MS.gene066944:intergenic | 45.0% | |
| TGGGCCGAAAAGAAGACAAA+AGG | + | 50836:5220-5239 | MS.gene066944:CDS | 45.0% | |
| TGTAGTTAGTAGCACATGCG+AGG | + | 50836:4750-4769 | MS.gene066944:intron | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | + | 50836:3502-3521 | MS.gene066944:CDS | 45.0% | |
| TGTTTCTTCTGTGCTCTTCG+GGG | + | 50836:3458-3477 | MS.gene066944:CDS | 45.0% | |
| TTTCTCCAGTCTGAATCCAC+CGG | + | 50836:3408-3427 | MS.gene066944:CDS | 45.0% | |
| ! | CCTACTTTGACTTCTTCACG+AGG | - | 50836:5598-5617 | MS.gene066944:intergenic | 45.0% |
| ! | CGAAGAGCACAGAAGAAACA+AGG | - | 50836:3458-3477 | MS.gene066944:intergenic | 45.0% |
| ! | TAAGGATTTGAGATCACCGG+TGG | - | 50836:3427-3446 | MS.gene066944:intergenic | 45.0% |
| !! | GACAACCCATCTTTTTCGTC+AGG | - | 50836:5523-5542 | MS.gene066944:intergenic | 45.0% |
| !!! | TTGTTTTTGAGTGGGACCCT+CGG | - | 50836:3379-3398 | MS.gene066944:intergenic | 45.0% |
| !! | ATTATTATAGAAATATAATA+TGG | + | 50836:3815-3834 | MS.gene066944:intron | 5.0% |
| CGGCTACAAAGTCGATTGGA+GGG | - | 50836:5873-5892 | MS.gene066944:intergenic | 50.0% | |
| GGTAGCGATCATACTGAGCA+CGG | - | 50836:3352-3371 | MS.gene066944:intergenic | 50.0% | |
| GGTCAGTTCACAGCTTAACG+AGG | + | 50836:5269-5288 | MS.gene066944:CDS | 50.0% | |
| GTGCTCAGTATGATCGCTAC+CGG | + | 50836:3351-3370 | MS.gene066944:CDS | 50.0% | |
| TCGGCTACAAAGTCGATTGG+AGG | - | 50836:5874-5893 | MS.gene066944:intergenic | 50.0% | |
| TGCTCAGTATGATCGCTACC+GGG | + | 50836:3352-3371 | MS.gene066944:CDS | 50.0% | |
| TGGTCGGCTACAAAGTCGAT+TGG | - | 50836:5877-5896 | MS.gene066944:intergenic | 50.0% | |
| ! | AGAAGGTACGAAAGCTGCAG+CGG | + | 50836:5798-5817 | MS.gene066944:CDS | 50.0% |
| ! | AGCACGGTGTTGAGCGATAA+TGG | - | 50836:3336-3355 | MS.gene066944:intergenic | 50.0% |
| ! | CACAACTTCTGGTGTTAGCG+TGG | + | 50836:3714-3733 | MS.gene066944:intron | 50.0% |
| ! | GGTGGATTCAGACTGGAGAA+AGG | - | 50836:3409-3428 | MS.gene066944:intergenic | 50.0% |
| AAGCTGTGAACTGACCCGCA+TGG | - | 50836:5265-5284 | MS.gene066944:intergenic | 55.0% | |
| AAGTCGATTGGAGGGAGCAG+AGG | - | 50836:5865-5884 | MS.gene066944:intergenic | 55.0% | |
| ACGCGTGCATGCCAAGCTAA+CGG | - | 50836:5827-5846 | MS.gene066944:intergenic | 55.0% | |
| AGTCGATTGGAGGGAGCAGA+GGG | - | 50836:5864-5883 | MS.gene066944:intergenic | 55.0% | |
| GTAAGACAAGCAAGGGCCAC+TGG | - | 50836:3490-3509 | MS.gene066944:intergenic | 55.0% | |
| ! | GATCACCGGTGGATTCAGAC+TGG | - | 50836:3416-3435 | MS.gene066944:intergenic | 55.0% |
| ATGATCGCTACCGGGTCCGA+GGG | + | 50836:3360-3379 | MS.gene066944:CDS | 60.0% | |
| GCATGCACGCGTTCTCGGTA+CGG | + | 50836:5835-5854 | MS.gene066944:CDS | 60.0% | |
| GCTTGGCATGCACGCGTTCT+CGG | + | 50836:5830-5849 | MS.gene066944:CDS | 60.0% | |
| GTCGATTGGAGGGAGCAGAG+GGG | - | 50836:5863-5882 | MS.gene066944:intergenic | 60.0% | |
| TATGATCGCTACCGGGTCCG+AGG | + | 50836:3359-3378 | MS.gene066944:CDS | 60.0% | |
| TGCAGCGGTGACCGTTAGCT+TGG | + | 50836:5813-5832 | MS.gene066944:CDS | 60.0% | |
| TTGAGTGGGACCCTCGGACC+CGG | - | 50836:3373-3392 | MS.gene066944:intergenic | 65.0% | |
| CTCTTCGGGGCTCGCACCAG+TGG | + | 50836:3471-3490 | MS.gene066944:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50836 | gene | 3216 | 5978 | 3216 | ID=MS.gene066944 |
| 50836 | mRNA | 3216 | 5978 | 3216 | ID=MS.gene066944.t1;Parent=MS.gene066944 |
| 50836 | exon | 3216 | 3617 | 3216 | ID=MS.gene066944.t1.exon1;Parent=MS.gene066944.t1 |
| 50836 | CDS | 3216 | 3617 | 3216 | ID=cds.MS.gene066944.t1;Parent=MS.gene066944.t1 |
| 50836 | exon | 5190 | 5978 | 5190 | ID=MS.gene066944.t1.exon2;Parent=MS.gene066944.t1 |
| 50836 | CDS | 5190 | 5978 | 5190 | ID=cds.MS.gene066944.t1;Parent=MS.gene066944.t1 |
| Gene Sequence |
| Protein sequence |
