AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066945


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066945.t1 MTR_7g451890 89.169 397 42 1 1 396 6 402 0.0 689
MS.gene066945.t1 MTR_7g047780 87.909 397 47 1 1 396 6 402 0.0 676
MS.gene066945.t1 MTR_7g050750 85.354 396 57 1 2 396 1 396 0.0 660
MS.gene066945.t1 MTR_7g050810 83.503 394 64 1 4 396 11 404 0.0 641
MS.gene066945.t1 MTR_3g101180 64.987 397 132 3 5 394 2 398 1.06e-176 498
MS.gene066945.t1 MTR_8g461160 66.076 395 127 4 5 395 2 393 8.67e-175 493
MS.gene066945.t1 MTR_7g050830 78.438 320 37 3 4 302 11 319 8.93e-173 485
MS.gene066945.t1 MTR_3g101010 63.239 389 138 3 9 396 5 389 2.64e-168 476
MS.gene066945.t1 MTR_3g018740 63.104 393 133 6 7 395 3 387 1.76e-165 469
MS.gene066945.t1 MTR_3g101130 61.893 391 139 4 9 396 6 389 1.56e-163 464
MS.gene066945.t1 MTR_4g045707 61.697 389 142 4 9 396 6 388 2.89e-163 463
MS.gene066945.t1 MTR_8g027395 59.335 391 150 3 7 396 15 397 1.80e-158 452
MS.gene066945.t1 MTR_3g101030 57.855 401 144 5 15 396 35 429 3.47e-153 439
MS.gene066945.t1 MTR_3g048000 57.364 387 139 5 10 394 28 390 3.07e-149 428
MS.gene066945.t1 MTR_4g088525 60.055 363 138 2 33 394 11 367 1.86e-147 422
MS.gene066945.t1 MTR_2g046030 56.489 393 159 5 7 395 3 387 1.10e-146 421
MS.gene066945.t1 MTR_8g027420 56.266 391 151 4 7 396 4 375 2.48e-146 420
MS.gene066945.t1 MTR_2g045980 55.725 393 162 5 7 395 3 387 1.23e-144 416
MS.gene066945.t1 MTR_3g101050 57.841 389 132 6 13 394 33 396 2.31e-141 408
MS.gene066945.t1 MTR_3g101200 56.997 393 141 6 3 394 25 390 3.40e-141 407
MS.gene066945.t1 MTR_3g015620 53.015 398 152 7 4 395 11 379 4.47e-133 386
MS.gene066945.t1 MTR_4g088535 54.948 384 148 4 9 391 7 366 1.13e-132 385
MS.gene066945.t1 MTR_3g102920 54.663 386 132 7 13 394 62 408 7.77e-130 379
MS.gene066945.t1 MTR_3g101190 51.337 374 116 3 24 396 4 312 2.33e-123 359
MS.gene066945.t1 MTR_3g100995 62.162 259 87 3 141 396 14 264 1.16e-112 330
MS.gene066945.t1 MTR_3g018747 60.076 263 87 3 134 395 9 254 3.14e-103 306
MS.gene066945.t1 MTR_3g015760 59.316 263 101 3 134 395 23 280 4.91e-97 291
MS.gene066945.t1 MTR_3g100010 48.889 315 112 4 31 311 37 336 4.89e-93 283
MS.gene066945.t1 MTR_3g111160 60.268 224 83 3 175 396 1 220 1.02e-82 252
MS.gene066945.t1 MTR_3g100520 59.375 224 74 4 175 396 1 209 5.87e-82 250
MS.gene066945.t1 MTR_3g114310 40.157 381 203 10 33 396 38 410 7.17e-81 254
MS.gene066945.t1 MTR_3g101110 56.962 237 72 4 137 370 71 280 3.56e-77 240
MS.gene066945.t1 MTR_2g046410 56.808 213 84 2 187 395 140 348 1.33e-74 236
MS.gene066945.t1 MTR_3g099970 59.694 196 62 2 134 329 20 198 1.12e-73 228
MS.gene066945.t1 MTR_3g101150 64.557 158 52 2 240 394 1 157 1.04e-65 206
MS.gene066945.t1 MTR_3g101020 52.083 192 57 3 208 396 1 160 1.74e-58 188
MS.gene066945.t1 MTR_3g102870 53.939 165 76 0 197 361 1 165 4.91e-54 177
MS.gene066945.t1 MTR_3g111150 49.143 175 64 3 12 186 2 151 2.43e-49 164
MS.gene066945.t1 MTR_3g100990 55.118 127 54 2 9 134 5 129 6.45e-33 129
MS.gene066945.t1 MTR_3g101140 48.571 105 53 1 292 396 13 116 3.43e-21 88.6
MS.gene066945.t1 MTR_4g093550 47.126 87 44 1 7 93 4 88 4.30e-14 68.2
MS.gene066945.t1 MTR_6g046890 56.250 64 28 0 26 89 14 77 1.20e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066945.t1 AT1G47710 51.969 381 177 5 17 394 13 390 2.04e-132 385
MS.gene066945.t1 AT1G47710 51.969 381 177 5 17 394 40 417 1.31e-131 384
MS.gene066945.t1 AT2G26390 45.178 394 199 6 7 393 3 386 3.25e-115 341
MS.gene066945.t1 AT2G25240 46.547 391 194 7 7 393 3 382 1.24e-113 337
MS.gene066945.t1 AT3G45220 44.584 397 201 7 7 393 3 390 5.91e-113 336
MS.gene066945.t1 AT1G62170 44.557 395 184 7 7 393 64 431 4.49e-106 320
MS.gene066945.t1 AT1G64030 44.162 394 188 9 7 393 3 371 8.15e-100 302
MS.gene066945.t1 AT1G62170 41.121 428 184 8 7 393 64 464 8.82e-99 302
MS.gene066945.t1 AT2G14540 47.139 367 165 7 32 393 55 397 2.12e-98 299
MS.gene066945.t1 AT2G35580 44.262 366 166 10 39 393 33 371 1.14e-92 283
MS.gene066945.t1 AT1G64010 44.545 220 96 4 175 393 1 195 1.10e-59 192
MS.gene066945.t1 AT1G64010 44.390 205 88 4 190 393 2 181 5.68e-53 174
MS.gene066945.t1 AT1G63280 57.627 118 46 2 131 246 5 120 2.21e-36 129
MS.gene066945.t1 AT1G62160 38.798 183 85 3 213 393 61 218 1.16e-34 128
MS.gene066945.t1 AT1G51330 50.893 112 52 3 132 240 29 140 3.22e-25 102
MS.gene066945.t1 AT1G64020 34.862 109 69 2 17 124 13 120 9.53e-12 62.4

Find 88 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGAGAAGAAGTGAATTTA+TGG 0.183576 7.3:-53427986 MS.gene066945:CDS
TCTGAGTTGCTAAAGAAATT+AGG 0.188756 7.3:-53427522 MS.gene066945:CDS
AGTCAAGAACTTTATGTTTC+CGG 0.215284 7.3:-53427444 MS.gene066945:CDS
CTTGTTTCTTCTGTGCTCTT+CGG 0.235044 7.3:-53429730 MS.gene066945:CDS
CCATCTTTGCCTTGTTTATA+AGG 0.244454 7.3:+53427717 None:intergenic
ACATAAAGTTCTTGACTTAT+AGG 0.247103 7.3:+53427450 None:intergenic
TTGTTTCTTCTGTGCTCTTC+GGG 0.252906 7.3:-53429729 MS.gene066945:CDS
TTTATTCTTGCTGGTCATAA+AGG 0.253223 7.3:+53427782 None:intergenic
GTCAAACCTCCCATAGAAAA+AGG 0.264352 7.3:+53427489 None:intergenic
AACCTTTCCAACAAAGAGTA+TGG 0.349311 7.3:+53427251 None:intergenic
GATGAACTGTTTATTCTTGC+TGG 0.350388 7.3:+53427773 None:intergenic
AAGTCAAAGTAGGCAAGTTC+AGG 0.369646 7.3:-53427581 MS.gene066945:CDS
CCTTGCTTGTCTTACGTCAA+TGG 0.370001 7.3:-53429691 MS.gene066945:CDS
GCTTGGCATGCACGCGTTCT+CGG 0.387428 7.3:-53427356 MS.gene066945:CDS
TTATTCTTGCTGGTCATAAA+GGG 0.388271 7.3:+53427783 None:intergenic
CTGATCAGAGAAGAGTTTAG+TGG 0.389922 7.3:-53427276 MS.gene066945:CDS
AGAAACAAGGTGAGAGCATA+AGG 0.391341 7.3:+53429744 None:intergenic
TTGATTGGATAACAAGTGTT+TGG 0.423243 7.3:+53429906 None:intergenic
TCAAAGGAAATATTGAATCT+TGG 0.427509 7.3:+53427555 None:intergenic
TTTGATTGATAAAGTAGCTT+CGG 0.430887 7.3:-53427640 MS.gene066945:CDS
AGTAGTCATAAGTTGTTTGA+AGG 0.434567 7.3:+53429633 None:intergenic
AGCACGGTGTTGAGCGATAA+TGG 0.435236 7.3:+53429853 None:intergenic
GTCATAAGTTGTTTGAAGGA+AGG 0.435473 7.3:+53429637 None:intergenic
CAAGTGTTTGGTGATGTTCA+TGG 0.446905 7.3:+53429918 None:intergenic
GTCTTACGTCAATGGTGTGT+GGG 0.450358 7.3:-53429683 MS.gene066945:CDS
AGTGGAACCATACTCTTTGT+TGG 0.451399 7.3:-53427258 MS.gene066945:CDS
AAGGTTGTCAATCCTCTTGA+TGG 0.463069 7.3:-53427234 MS.gene066945:CDS
TGCAGCGGTGACCGTTAGCT+TGG 0.465728 7.3:-53427373 MS.gene066945:CDS
CTCTTCGGGGCTCGCACCAG+TGG 0.470391 7.3:-53429715 MS.gene066945:CDS
TGGGCCGAAAAGAAGACAAA+AGG 0.471958 7.3:-53427966 MS.gene066945:CDS
GTTGCTAAAGAAATTAGGAT+TGG 0.473453 7.3:-53427517 MS.gene066945:CDS
GAGAGAAGAAGTGAATTTAT+GGG 0.474520 7.3:-53427985 MS.gene066945:CDS
CCTTATAAACAAGGCAAAGA+TGG 0.475837 7.3:-53427717 MS.gene066945:CDS
TGTTCATGGAAACGTTGGTT+AGG 0.481229 7.3:+53429932 None:intergenic
TTCATTGAAGTAAACGAAGA+AGG 0.482300 7.3:-53427405 MS.gene066945:CDS
AACCATACTCTTTGTTGGAA+AGG 0.488595 7.3:-53427253 MS.gene066945:CDS
GCATGCACGCGTTCTCGGTA+CGG 0.512534 7.3:-53427351 MS.gene066945:CDS
TTCAAGATCTTCTTCCATGC+GGG 0.517087 7.3:-53427938 MS.gene066945:CDS
GCAAATGCACTATACTTCAA+AGG 0.528381 7.3:-53427885 MS.gene066945:CDS
AGTCGATTGGAGGGAGCAGA+GGG 0.528422 7.3:+53427325 None:intergenic
CTTGGTCTTCCTTATAAACA+AGG 0.530839 7.3:-53427726 MS.gene066945:CDS
GTGCTCAGTATGATCGCTAC+CGG 0.530879 7.3:-53429835 MS.gene066945:CDS
CTCAGAAGCTTCAATCTCAA+AGG 0.535018 7.3:+53427539 None:intergenic
CAGTTCATCAGTTCTTTCGA+TGG 0.537736 7.3:-53427759 MS.gene066945:CDS
GAAAGACTTCTGAAATATGC+CGG 0.537794 7.3:+53427425 None:intergenic
TCTCAATGGCAAGTCAGTAA+AGG 0.555621 7.3:-53427808 MS.gene066945:CDS
CACTATACTTCAAAGGAGTG+TGG 0.556458 7.3:-53427878 MS.gene066945:CDS
CGAAGAGCACAGAAGAAACA+AGG 0.559186 7.3:+53429731 None:intergenic
GGGCCGAAAAGAAGACAAAA+GGG 0.559915 7.3:-53427965 MS.gene066945:CDS
GGTGGATTCAGACTGGAGAA+AGG 0.560742 7.3:+53429780 None:intergenic
TTTCTCCAGTCTGAATCCAC+CGG 0.562078 7.3:-53429778 MS.gene066945:CDS
TTGAGTGGGACCCTCGGACC+CGG 0.572311 7.3:+53429816 None:intergenic
CCTCGTGAAGAAGTCAAAGT+AGG 0.574480 7.3:-53427591 MS.gene066945:CDS
TGTTTGAAGGAAGGTTGAAG+AGG 0.574991 7.3:+53429646 None:intergenic
TGCAGTTGATTTCGTCAACA+AGG 0.577204 7.3:-53429590 MS.gene066945:intron
GTAAGACAAGCAAGGGCCAC+TGG 0.577751 7.3:+53429699 None:intergenic
TATGATCGCTACCGGGTCCG+AGG 0.579880 7.3:-53429827 MS.gene066945:CDS
GTTTGATACTTTGAAAACAA+AGG 0.580328 7.3:-53427847 MS.gene066945:CDS
TGTCTTACGTCAATGGTGTG+TGG 0.580488 7.3:-53429684 MS.gene066945:CDS
TTACTGACTTGCCATTGAGA+AGG 0.583004 7.3:+53427811 None:intergenic
TGGTCGGCTACAAAGTCGAT+TGG 0.583969 7.3:+53427312 None:intergenic
GCATAAGGATTTGAGATCAC+CGG 0.585769 7.3:+53429759 None:intergenic
ACTATACTTCAAAGGAGTGT+GGG 0.588475 7.3:-53427877 MS.gene066945:CDS
GATCACCGGTGGATTCAGAC+TGG 0.590752 7.3:+53429773 None:intergenic
AGGTTGTCAATCCTCTTGAT+GGG 0.591371 7.3:-53427233 MS.gene066945:CDS
TGTTTCTTCTGTGCTCTTCG+GGG 0.592574 7.3:-53429728 MS.gene066945:CDS
TCGGCTACAAAGTCGATTGG+AGG 0.593325 7.3:+53427315 None:intergenic
ATTCAAGATCTTCTTCCATG+CGG 0.601926 7.3:-53427939 MS.gene066945:CDS
TATTCTTGCTGGTCATAAAG+GGG 0.604992 7.3:+53427784 None:intergenic
AAATGTAAATAGAGAACGCA+CGG 0.605169 7.3:+53427694 None:intergenic
TTCAACAATCACCCATCAAG+AGG 0.605491 7.3:+53427222 None:intergenic
AAGTCGATTGGAGGGAGCAG+AGG 0.607935 7.3:+53427324 None:intergenic
CGGCTACAAAGTCGATTGGA+GGG 0.609881 7.3:+53427316 None:intergenic
ACGCGTGCATGCCAAGCTAA+CGG 0.612153 7.3:+53427362 None:intergenic
ATGATCGCTACCGGGTCCGA+GGG 0.612325 7.3:-53429826 MS.gene066945:CDS
ATGGTGATGCAGAATCTCAT+CGG 0.612465 7.3:-53429970 MS.gene066945:CDS
CTTGTTTATAAGGAAGACCA+AGG 0.612910 7.3:+53427727 None:intergenic
TGCTCAGTATGATCGCTACC+GGG 0.616181 7.3:-53429834 MS.gene066945:CDS
CATTGACGTAAGACAAGCAA+GGG 0.620054 7.3:+53429692 None:intergenic
TAAGGATTTGAGATCACCGG+TGG 0.631231 7.3:+53429762 None:intergenic
GGTGATGTTCATGGAAACGT+TGG 0.634641 7.3:+53429927 None:intergenic
AGAAGGTACGAAAGCTGCAG+CGG 0.650544 7.3:-53427388 MS.gene066945:CDS
AAGCTGTGAACTGACCCGCA+TGG 0.684890 7.3:+53427924 None:intergenic
GGTCAGTTCACAGCTTAACG+AGG 0.693418 7.3:-53427917 MS.gene066945:CDS
CCTACTTTGACTTCTTCACG+AGG 0.700753 7.3:+53427591 None:intergenic
CCATTGACGTAAGACAAGCA+AGG 0.702901 7.3:+53429691 None:intergenic
GGTAGCGATCATACTGAGCA+CGG 0.705369 7.3:+53429837 None:intergenic
GTCGATTGGAGGGAGCAGAG+GGG 0.752667 7.3:+53427326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTTTTTTAGTAG+AGG - chr7.3:53427686-53427705 MS.gene066945:CDS 10.0%
!!! AAAACTTAAATTTTTCTGTT+TGG + chr7.3:53428503-53428522 None:intergenic 15.0%
!!! ATTAGTAACAGTTTATTTTA+GGG + chr7.3:53428302-53428321 None:intergenic 15.0%
!!! TATTAGTAACAGTTTATTTT+AGG + chr7.3:53428303-53428322 None:intergenic 15.0%
!! AAAAATCAATAATGTGACTT+TGG - chr7.3:53428716-53428735 MS.gene066945:intron 20.0%
!! AAAATATGACAAGGATAATT+AGG - chr7.3:53428856-53428875 MS.gene066945:intron 20.0%
!! AAATATGACAAGGATAATTA+GGG - chr7.3:53428857-53428876 MS.gene066945:intron 20.0%
!! ATTGATCTAGAAATTTGTAA+GGG + chr7.3:53428458-53428477 None:intergenic 20.0%
!! ATTTGTATGTAATTGTACTA+TGG + chr7.3:53428372-53428391 None:intergenic 20.0%
!! GAAACAAAGTTATATGTAAA+AGG + chr7.3:53428481-53428500 None:intergenic 20.0%
!! GCTCATTCTATTAAAATAAT+AGG - chr7.3:53427956-53427975 MS.gene066945:CDS 20.0%
!! TTTGTATGTAATTGTACTAT+GGG + chr7.3:53428371-53428390 None:intergenic 20.0%
!!! CAATCTTTTGAGAAATAAAT+TGG + chr7.3:53428204-53428223 None:intergenic 20.0%
!!! TTTTCAATGCAAAAATTCTT+TGG + chr7.3:53428176-53428195 None:intergenic 20.0%
! AAAATGGTTATACCAATTAC+AGG + chr7.3:53428883-53428902 None:intergenic 25.0%
! ACATAAAGTTCTTGACTTAT+AGG + chr7.3:53429753-53429772 None:intergenic 25.0%
! GAATGAGCATATTGATATTT+AGG + chr7.3:53428100-53428119 None:intergenic 25.0%
! GATTGATCTAGAAATTTGTA+AGG + chr7.3:53428459-53428478 None:intergenic 25.0%
! GATTGGATTGTAATGTTAAT+AGG + chr7.3:53428427-53428446 None:intergenic 25.0%
! TCAAAGGAAATATTGAATCT+TGG + chr7.3:53429648-53429667 None:intergenic 25.0%
! TTATTTGTTCTCACAAGTTA+GGG - chr7.3:53427644-53427663 MS.gene066945:CDS 25.0%
! TTGAACTCGTTAGATTTAAA+AGG + chr7.3:53427990-53428009 None:intergenic 25.0%
! TTTATTTGTTCTCACAAGTT+AGG - chr7.3:53427643-53427662 MS.gene066945:CDS 25.0%
! TTTGATTGATAAAGTAGCTT+CGG - chr7.3:53429560-53429579 MS.gene066945:intron 25.0%
!! GTTTGATACTTTGAAAACAA+AGG - chr7.3:53429353-53429372 MS.gene066945:intron 25.0%
!! TTTTCAACACAAAGTTTGTA+AGG + chr7.3:53428031-53428050 None:intergenic 25.0%
!!! ACAAGTTTGTTTTTCACAAT+TGG + chr7.3:53428660-53428679 None:intergenic 25.0%
!!! CTTTTCTTTGAGATTTTGAT+TGG + chr7.3:53427312-53427331 None:intergenic 25.0%
!!! TACAATTGATACTGATTTGA+AGG - chr7.3:53429182-53429201 MS.gene066945:intron 25.0%
AAATGTAAATAGAGAACGCA+CGG + chr7.3:53429509-53429528 None:intergenic 30.0%
AATAAACCTATCCAGCTAAT+TGG + chr7.3:53429017-53429036 None:intergenic 30.0%
ACTCGTTAGATTTAACATGA+TGG + chr7.3:53427929-53427948 None:intergenic 30.0%
ACTGTCTACAAAATATGACA+AGG - chr7.3:53428847-53428866 MS.gene066945:intron 30.0%
ACTTGTGTATATATAGTGCA+AGG - chr7.3:53428674-53428693 MS.gene066945:intron 30.0%
AGGTTTAATGTCTCAGAAAA+TGG + chr7.3:53428899-53428918 None:intergenic 30.0%
AGTAGTCATAAGTTGTTTGA+AGG + chr7.3:53427570-53427589 None:intergenic 30.0%
AGTCAAGAACTTTATGTTTC+CGG - chr7.3:53429756-53429775 MS.gene066945:CDS 30.0%
AGTCCATTATTGTGCTTTAA+AGG + chr7.3:53428398-53428417 None:intergenic 30.0%
CTCTGATCAGAAACAAAAAA+GGG + chr7.3:53429914-53429933 None:intergenic 30.0%
GAGAGAAGAAGTGAATTTAT+GGG - chr7.3:53429215-53429234 MS.gene066945:intron 30.0%
GCATTGCAAAATAAACCAAT+AGG + chr7.3:53428955-53428974 None:intergenic 30.0%
GGATTGTAATGTTAATAGGT+AGG + chr7.3:53428423-53428442 None:intergenic 30.0%
GTTGCTAAAGAAATTAGGAT+TGG - chr7.3:53429683-53429702 MS.gene066945:CDS 30.0%
TATCTTAATATGTGCCCTAA+GGG + chr7.3:53428153-53428172 None:intergenic 30.0%
TATGAAAGACAGCACAAAAA+CGG + chr7.3:53427786-53427805 None:intergenic 30.0%
TCTCTGATCAGAAACAAAAA+AGG + chr7.3:53429915-53429934 None:intergenic 30.0%
TCTGAGTTGCTAAAGAAATT+AGG - chr7.3:53429678-53429697 MS.gene066945:CDS 30.0%
TTATTCTTGCTGGTCATAAA+GGG + chr7.3:53429420-53429439 None:intergenic 30.0%
TTCATTGAAGTAAACGAAGA+AGG - chr7.3:53429795-53429814 MS.gene066945:CDS 30.0%
TTCTCAGTTGCTTGATTAAT+TGG - chr7.3:53428063-53428082 MS.gene066945:intron 30.0%
TTGATTGGATAACAAGTGTT+TGG + chr7.3:53427297-53427316 None:intergenic 30.0%
TTGTATTCAAAATGAGTCCA+AGG + chr7.3:53428919-53428938 None:intergenic 30.0%
TTTATTCTTGCTGGTCATAA+AGG + chr7.3:53429421-53429440 None:intergenic 30.0%
! AAACCTTAACATGTGCTATT+AGG - chr7.3:53428260-53428279 MS.gene066945:intron 30.0%
! AACCTTAACATGTGCTATTA+GGG - chr7.3:53428261-53428280 MS.gene066945:intron 30.0%
! AACTACAGTTTTCAAACAAG+TGG + chr7.3:53428751-53428770 None:intergenic 30.0%
! ATTTTTGAACAGACCATGAT+AGG - chr7.3:53427898-53427917 MS.gene066945:CDS 30.0%
!! TATGATTTTGACCTTCTCAA+TGG - chr7.3:53429378-53429397 MS.gene066945:intron 30.0%
!!! ATTGGCTTTACCTTTTTCTA+TGG - chr7.3:53429701-53429720 MS.gene066945:CDS 30.0%
!!! CATAAGTTAGTTTTCAGTGT+TGG - chr7.3:53428592-53428611 MS.gene066945:intron 30.0%
!!! TTGGCTTTACCTTTTTCTAT+GGG - chr7.3:53429702-53429721 MS.gene066945:CDS 30.0%
!!! TTTTCTGAGACATTAAACCT+TGG - chr7.3:53428899-53428918 MS.gene066945:intron 30.0%
AACCATACTCTTTGTTGGAA+AGG - chr7.3:53429947-53429966 MS.gene066945:CDS 35.0%
AACCTTTCCAACAAAGAGTA+TGG + chr7.3:53429952-53429971 None:intergenic 35.0%
AAGCGCTAAAGATTACCTAT+TGG - chr7.3:53428937-53428956 MS.gene066945:intron 35.0%
AGCTAATTGGCAAGACATAT+AGG + chr7.3:53429004-53429023 None:intergenic 35.0%
ATTCAAGATCTTCTTCCATG+CGG - chr7.3:53429261-53429280 MS.gene066945:intron 35.0%
CCATATACCAAAAAGATTGC+AGG - chr7.3:53428529-53428548 MS.gene066945:intron 35.0%
CCTTATAAACAAGGCAAAGA+TGG - chr7.3:53429483-53429502 MS.gene066945:intron 35.0%
CGAGAGAAGAAGTGAATTTA+TGG - chr7.3:53429214-53429233 MS.gene066945:intron 35.0%
CTATGGGTTTAAGCTCAATA+TGG + chr7.3:53428355-53428374 None:intergenic 35.0%
CTTGTTTATAAGGAAGACCA+AGG + chr7.3:53429476-53429495 None:intergenic 35.0%
GATGAACTGTTTATTCTTGC+TGG + chr7.3:53429430-53429449 None:intergenic 35.0%
GCAAATGCACTATACTTCAA+AGG - chr7.3:53429315-53429334 MS.gene066945:intron 35.0%
GGATCAATAAACCTAACTAC+TGG - chr7.3:53428613-53428632 MS.gene066945:intron 35.0%
GTATCTTAATATGTGCCCTA+AGG + chr7.3:53428154-53428173 None:intergenic 35.0%
GTCATAAGTTGTTTGAAGGA+AGG + chr7.3:53427566-53427585 None:intergenic 35.0%
TAATCAAGCAACTGAGAAAG+AGG + chr7.3:53428061-53428080 None:intergenic 35.0%
TATATGTCTTGCCAATTAGC+TGG - chr7.3:53429003-53429022 MS.gene066945:intron 35.0%
TATGGGAGGTTTGACAAAAA+TGG - chr7.3:53429719-53429738 MS.gene066945:CDS 35.0%
TATTCTTGCTGGTCATAAAG+GGG + chr7.3:53429419-53429438 None:intergenic 35.0%
TCAACACAAAGTTTGTAAGG+CGG + chr7.3:53428028-53428047 None:intergenic 35.0%
TCTCACTTTATCCAGTAGTT+AGG + chr7.3:53428627-53428646 None:intergenic 35.0%
TGATCAGAAACAAAAAAGGG+TGG + chr7.3:53429911-53429930 None:intergenic 35.0%
TTCTTCCTGACGAAAAAGAT+GGG - chr7.3:53429529-53429548 MS.gene066945:intron 35.0%
TTGTAAGGGAGAAACATGAT+TGG + chr7.3:53428444-53428463 None:intergenic 35.0%
TTTCTTCCTGACGAAAAAGA+TGG - chr7.3:53429528-53429547 MS.gene066945:intron 35.0%
! AAGCCCTTTTGTCTTCTTTT+CGG + chr7.3:53429241-53429260 None:intergenic 35.0%
! ACTATACTTCAAAGGAGTGT+GGG - chr7.3:53429323-53429342 MS.gene066945:intron 35.0%
! CTTGGTCTTCCTTATAAACA+AGG - chr7.3:53429474-53429493 MS.gene066945:intron 35.0%
! GCAAAATGAAAGCATGGAAA+GGG + chr7.3:53428566-53428585 None:intergenic 35.0%
! GTTTTTGTGCTGTCTTTCAT+AGG - chr7.3:53427785-53427804 MS.gene066945:CDS 35.0%
!! CCATCTTTGCCTTGTTTATA+AGG + chr7.3:53429486-53429505 None:intergenic 35.0%
!! CCTGCAATCTTTTTGGTATA+TGG + chr7.3:53428532-53428551 None:intergenic 35.0%
!! GAAAGACTTCTGAAATATGC+CGG + chr7.3:53429778-53429797 None:intergenic 35.0%
!! GTGCCTTTAAAGCACAATAA+TGG - chr7.3:53428392-53428411 MS.gene066945:intron 35.0%
!!! GAGAGAAGTTGTTTTTGAGT+GGG + chr7.3:53427401-53427420 None:intergenic 35.0%
!!! TTCGATGGTTTTAAAGTCCT+TGG - chr7.3:53429456-53429475 MS.gene066945:intron 35.0%
AAGGTTGTCAATCCTCTTGA+TGG - chr7.3:53429966-53429985 MS.gene066945:CDS 40.0%
AAGTCAAAGTAGGCAAGTTC+AGG - chr7.3:53429619-53429638 MS.gene066945:CDS 40.0%
AGAAACTCACACACAACTTC+TGG - chr7.3:53427717-53427736 MS.gene066945:CDS 40.0%
AGGTTGTCAATCCTCTTGAT+GGG - chr7.3:53429967-53429986 MS.gene066945:CDS 40.0%
AGTGGAACCATACTCTTTGT+TGG - chr7.3:53429942-53429961 MS.gene066945:CDS 40.0%
CACTATACTTCAAAGGAGTG+TGG - chr7.3:53429322-53429341 MS.gene066945:intron 40.0%
CAGAAACAAAAAAGGGTGGT+CGG + chr7.3:53429907-53429926 None:intergenic 40.0%
CAGTTCATCAGTTCTTTCGA+TGG - chr7.3:53429441-53429460 MS.gene066945:intron 40.0%
CATTGACGTAAGACAAGCAA+GGG + chr7.3:53427511-53427530 None:intergenic 40.0%
CTCAGAAGCTTCAATCTCAA+AGG + chr7.3:53429664-53429683 None:intergenic 40.0%
CTGATCAGAGAAGAGTTTAG+TGG - chr7.3:53429924-53429943 MS.gene066945:CDS 40.0%
GGATAATTAGGGCCTGTAAT+TGG - chr7.3:53428868-53428887 MS.gene066945:intron 40.0%
GTCAAACCTCCCATAGAAAA+AGG + chr7.3:53429714-53429733 None:intergenic 40.0%
TCTCAATGGCAAGTCAGTAA+AGG - chr7.3:53429392-53429411 MS.gene066945:intron 40.0%
TGCCCTAATAGCACATGTTA+AGG + chr7.3:53428266-53428285 None:intergenic 40.0%
TGTTTGAAGGAAGGTTGAAG+AGG + chr7.3:53427557-53427576 None:intergenic 40.0%
TTCAAGATCTTCTTCCATGC+GGG - chr7.3:53429262-53429281 MS.gene066945:intron 40.0%
TTGCTTCCATACACCACATA+TGG + chr7.3:53429067-53429086 None:intergenic 40.0%
! AAATGCTAACTTGTGCCCTT+AGG - chr7.3:53428135-53428154 MS.gene066945:intron 40.0%
! AATGCTAACTTGTGCCCTTA+GGG - chr7.3:53428136-53428155 MS.gene066945:intron 40.0%
! AGAAACAAGGTGAGAGCATA+AGG + chr7.3:53427459-53427478 None:intergenic 40.0%
! AGCTTCGGATTCTGAGTTTT+TGG - chr7.3:53429575-53429594 MS.gene066945:intron 40.0%
! ATGGTGATGCAGAATCTCAT+CGG - chr7.3:53427230-53427249 MS.gene066945:CDS 40.0%
! CGCAAAATGAAAGCATGGAA+AGG + chr7.3:53428567-53428586 None:intergenic 40.0%
! CTTGTTTCTTCTGTGCTCTT+CGG - chr7.3:53427470-53427489 MS.gene066945:CDS 40.0%
! GCATAAGGATTTGAGATCAC+CGG + chr7.3:53427444-53427463 None:intergenic 40.0%
! GCTTTACCTTTTTCTATGGG+AGG - chr7.3:53429705-53429724 MS.gene066945:CDS 40.0%
! GTCTGAACCTGCAATCTTTT+TGG + chr7.3:53428539-53428558 None:intergenic 40.0%
! TGCAGTTGATTTCGTCAACA+AGG - chr7.3:53427610-53427629 MS.gene066945:CDS 40.0%
! TGTTCATGGAAACGTTGGTT+AGG + chr7.3:53427271-53427290 None:intergenic 40.0%
! TTGTTTCTTCTGTGCTCTTC+GGG - chr7.3:53427471-53427490 MS.gene066945:CDS 40.0%
!! CAAGTGTTTGGTGATGTTCA+TGG + chr7.3:53427285-53427304 None:intergenic 40.0%
!! CATGATGGATCAACCTATCA+TGG + chr7.3:53427914-53427933 None:intergenic 40.0%
!! TTACTGACTTGCCATTGAGA+AGG + chr7.3:53429392-53429411 None:intergenic 40.0%
!!! GGAGAGAAGTTGTTTTTGAG+TGG + chr7.3:53427402-53427421 None:intergenic 40.0%
CACCACATATGGAGAGAGTT+AGG + chr7.3:53429056-53429075 None:intergenic 45.0%
CACCTAACTCTCTCCATATG+TGG - chr7.3:53429051-53429070 MS.gene066945:intron 45.0%
CCATTGACGTAAGACAAGCA+AGG + chr7.3:53427512-53427531 None:intergenic 45.0%
CCTCGTGAAGAAGTCAAAGT+AGG - chr7.3:53429609-53429628 MS.gene066945:CDS 45.0%
CCTTGCTTGTCTTACGTCAA+TGG - chr7.3:53427509-53427528 MS.gene066945:CDS 45.0%
CTCTCTCCATATGTGGTGTA+TGG - chr7.3:53429058-53429077 MS.gene066945:intron 45.0%
GGGAGGTTTGACAAAAATGG+TGG - chr7.3:53429722-53429741 MS.gene066945:CDS 45.0%
GGGCCGAAAAGAAGACAAAA+GGG - chr7.3:53429235-53429254 MS.gene066945:intron 45.0%
GGTGATGTTCATGGAAACGT+TGG + chr7.3:53427276-53427295 None:intergenic 45.0%
GTAGTTAGTAGCACATGCGA+GGG - chr7.3:53428765-53428784 MS.gene066945:intron 45.0%
GTCTTACGTCAATGGTGTGT+GGG - chr7.3:53427517-53427536 MS.gene066945:CDS 45.0%
GTCTTGCCAATTAGCTGGAT+AGG - chr7.3:53429008-53429027 MS.gene066945:intron 45.0%
TCGCACGCAAAATGAAAGCA+TGG + chr7.3:53428572-53428591 None:intergenic 45.0%
TGGGCCGAAAAGAAGACAAA+AGG - chr7.3:53429234-53429253 MS.gene066945:intron 45.0%
TGTAGTTAGTAGCACATGCG+AGG - chr7.3:53428764-53428783 MS.gene066945:intron 45.0%
TGTCTTACGTCAATGGTGTG+TGG - chr7.3:53427516-53427535 MS.gene066945:CDS 45.0%
TGTTTCTTCTGTGCTCTTCG+GGG - chr7.3:53427472-53427491 MS.gene066945:CDS 45.0%
TTTCTCCAGTCTGAATCCAC+CGG - chr7.3:53427422-53427441 MS.gene066945:CDS 45.0%
! CCTACTTTGACTTCTTCACG+AGG + chr7.3:53429612-53429631 None:intergenic 45.0%
! CGAAGAGCACAGAAGAAACA+AGG + chr7.3:53427472-53427491 None:intergenic 45.0%
! TAAGGATTTGAGATCACCGG+TGG + chr7.3:53427441-53427460 None:intergenic 45.0%
!! GACAACCCATCTTTTTCGTC+AGG + chr7.3:53429537-53429556 None:intergenic 45.0%
!!! TTGTTTTTGAGTGGGACCCT+CGG + chr7.3:53427393-53427412 None:intergenic 45.0%
!! ATTATTATAGAAATATAATA+TGG - chr7.3:53427829-53427848 MS.gene066945:CDS 5.0%
CGGCTACAAAGTCGATTGGA+GGG + chr7.3:53429887-53429906 None:intergenic 50.0%
GGTAGCGATCATACTGAGCA+CGG + chr7.3:53427366-53427385 None:intergenic 50.0%
GGTCAGTTCACAGCTTAACG+AGG - chr7.3:53429283-53429302 MS.gene066945:intron 50.0%
GTGCTCAGTATGATCGCTAC+CGG - chr7.3:53427365-53427384 MS.gene066945:CDS 50.0%
TCGGCTACAAAGTCGATTGG+AGG + chr7.3:53429888-53429907 None:intergenic 50.0%
TGCTCAGTATGATCGCTACC+GGG - chr7.3:53427366-53427385 MS.gene066945:CDS 50.0%
TGGTCGGCTACAAAGTCGAT+TGG + chr7.3:53429891-53429910 None:intergenic 50.0%
! AGAAGGTACGAAAGCTGCAG+CGG - chr7.3:53429812-53429831 MS.gene066945:CDS 50.0%
! AGCACGGTGTTGAGCGATAA+TGG + chr7.3:53427350-53427369 None:intergenic 50.0%
! CACAACTTCTGGTGTTAGCG+TGG - chr7.3:53427728-53427747 MS.gene066945:CDS 50.0%
! GGTGGATTCAGACTGGAGAA+AGG + chr7.3:53427423-53427442 None:intergenic 50.0%
AAGCTGTGAACTGACCCGCA+TGG + chr7.3:53429279-53429298 None:intergenic 55.0%
AAGTCGATTGGAGGGAGCAG+AGG + chr7.3:53429879-53429898 None:intergenic 55.0%
ACGCGTGCATGCCAAGCTAA+CGG + chr7.3:53429841-53429860 None:intergenic 55.0%
AGTCGATTGGAGGGAGCAGA+GGG + chr7.3:53429878-53429897 None:intergenic 55.0%
GTAAGACAAGCAAGGGCCAC+TGG + chr7.3:53427504-53427523 None:intergenic 55.0%
! GATCACCGGTGGATTCAGAC+TGG + chr7.3:53427430-53427449 None:intergenic 55.0%
ATGATCGCTACCGGGTCCGA+GGG - chr7.3:53427374-53427393 MS.gene066945:CDS 60.0%
GCATGCACGCGTTCTCGGTA+CGG - chr7.3:53429849-53429868 MS.gene066945:CDS 60.0%
GCTTGGCATGCACGCGTTCT+CGG - chr7.3:53429844-53429863 MS.gene066945:CDS 60.0%
GTCGATTGGAGGGAGCAGAG+GGG + chr7.3:53429877-53429896 None:intergenic 60.0%
TATGATCGCTACCGGGTCCG+AGG - chr7.3:53427373-53427392 MS.gene066945:CDS 60.0%
TGCAGCGGTGACCGTTAGCT+TGG - chr7.3:53429827-53429846 MS.gene066945:CDS 60.0%
TTGAGTGGGACCCTCGGACC+CGG + chr7.3:53427387-53427406 None:intergenic 65.0%
CTCTTCGGGGCTCGCACCAG+TGG - chr7.3:53427485-53427504 MS.gene066945:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 53427230 53429992 53427230 ID=MS.gene066945
chr7.3 mRNA 53427230 53429992 53427230 ID=MS.gene066945.t1;Parent=MS.gene066945
chr7.3 exon 53429591 53429992 53429591 ID=MS.gene066945.t1.exon1;Parent=MS.gene066945.t1
chr7.3 CDS 53429591 53429992 53429591 ID=cds.MS.gene066945.t1;Parent=MS.gene066945.t1
chr7.3 exon 53427230 53428018 53427230 ID=MS.gene066945.t1.exon2;Parent=MS.gene066945.t1
chr7.3 CDS 53427230 53428018 53427230 ID=cds.MS.gene066945.t1;Parent=MS.gene066945.t1
Gene Sequence

>MS.gene066945

ATGGTGATGCAGAATCTCATCGGAAAATCATTCACAAACCTAACCAACGTTTCCATGAACATCACCAAACACTTGTTATCCAATCAAAATCTCAAAGAAAAGAACGTTGTGTTTTCACCATTATCGCTCAACACCGTGCTCAGTATGATCGCTACCGGGTCCGAGGGTCCCACTCAAAAACAACTTCTCTCCTTTCTCCAGTCTGAATCCACCGGTGATCTCAAATCCTTATGCTCTCACCTTGTTTCTTCTGTGCTCTTCGGGGCTCGCACCAGTGGCCCTTGCTTGTCTTACGTCAATGGTGTGTGGGTTGAACAGACAATTCCTCTTCAACCTTCCTTCAAACAACTTATGACTACTGATTTCAAAGCTGCTTTTGCTGCAGTTGATTTCGTCAACAAGGTACTAATGCTTTTATTTGTTCTCACAAGTTAGGGTTTGAAGTTTAGTGTTATCATATTTTATTTTTTTAGTAGAGGAAATGATAAGAAACTCACACACAACTTCTGGTGTTAGCGTGGTGTCTGCGTGTCTGTGACGTGCTGTTTTGTGTCCGTTTTTGTGCTGTCTTTCATAGGTGTTAAAACAATTATTTATGAATTATTATAGAAATATAATATGGTCAATTGTTATTAAAATACAAATCATCGATGAATAGTCTGATTGTTATTTTTGAACAGACCATGATAGGTTGATCCATCATGTTAAATCTAACGAGTTCAATATGCTCATTCTATTAAAATAATGTTAAATCTAACCTTTTAAATCTAACGAGTTCAATATGTCTGATTGTTACCGCCTTACAAACTTTGTGTTGAAAATTTTAATCCTCTTTCTCAGTTGCTTGATTAATTGGTTAAAGAGTGACCTAAATATCAATATGCTCATTCTATTAAAATAATAGGAAATGCTAACTTGTGCCCTTAGGGCACATATTAAGATACCAAAGAATTTTTGCATTGAAAATTGTGCCAATTTATTTCTCAAAAGATTGAAATTTAAATTTTCTCAATAAATACTTCTATTTTAGAAACCTTAACATGTGCTATTAGGGCACAAGTTAACATGACCCTAAAATAAACTGTTACTAATAATGTCAGTTAGTACTATTTTTTTTCATAGCCATATTGAGCTTAAACCCATAGTACAATTACATACAAATGTGCCTTTAAAGCACAATAATGGACTGACCTACCTATTAACATTACAATCCAATCATGTTTCTCCCTTACAAATTTCTAGATCAATCCTTTTACATATAACTTTGTTTCCAAACAGAAAAATTTAAGTTTTACAATTCCATATACCAAAAAGATTGCAGGTTCAGACTTCACCCTTTCCATGCTTTCATTTTGCGTGCGACATAAGTTAGTTTTCAGTGTTGGATCAATAAACCTAACTACTGGATAAAGTGAGATATTATTGATCCAATTGTGAAAAACAAACTTGTGTATATATAGTGCAAGGCTATCTTGTGCACATTAGAAAAAATCAATAATGTGACTTTGGAATGTTTTACCACTTGTTTGAAAACTGTAGTTAGTAGCACATGCGAGGGAGTGACTTTAGTATTATGTATTATGAATTGATTTTTTATTTTGAACATACAAACTTGCTACTGTCTACAAAATATGACAAGGATAATTAGGGCCTGTAATTGGTATAACCATTTTCTGAGACATTAAACCTTGGACTCATTTTGAATACAAGCGCTAAAGATTACCTATTGGTTTATTTTGCAATGCGAAAAATATCAACAAATATAAGATTACCTATATGTCTTGCCAATTAGCTGGATAGGTTTATTTTGCTACTCTGTTTCACCTAACTCTCTCCATATGTGGTGTATGGAAGCAACAAAATCAATGCGAAAAATATCAACAAAATGTTTAATTCTTCTGTTATAATGCTCATGAAAAAATTCAAATGATTTATTTTAACATGTTTAATTTTACAATTGATACTGATTTGAAGGCTGATGAAGCGAGAGAAGAAGTGAATTTATGGGCCGAAAAGAAGACAAAAGGGCTTATTCAAGATCTTCTTCCATGCGGGTCAGTTCACAGCTTAACGAGGCTAATCTTTGCAAATGCACTATACTTCAAAGGAGTGTGGGAACAACAGTTTGATACTTTGAAAACAAAGGACTATGATTTTGACCTTCTCAATGGCAAGTCAGTAAAGGTCCCCTTTATGACCAGCAAGAATAAACAGTTCATCAGTTCTTTCGATGGTTTTAAAGTCCTTGGTCTTCCTTATAAACAAGGCAAAGATGGCCGTGCGTTCTCTATTTACATTTTTCTTCCTGACGAAAAAGATGGGTTGTCAGCTTTGATTGATAAAGTAGCTTCGGATTCTGAGTTTTTGGAACAGAAACTTCCTCGTGAAGAAGTCAAAGTAGGCAAGTTCAGGATTCCAAGATTCAATATTTCCTTTGAGATTGAAGCTTCTGAGTTGCTAAAGAAATTAGGATTGGCTTTACCTTTTTCTATGGGAGGTTTGACAAAAATGGTGGACTCTCCTATAAGTCAAGAACTTTATGTTTCCGGCATATTTCAGAAGTCTTTCATTGAAGTAAACGAAGAAGGTACGAAAGCTGCAGCGGTGACCGTTAGCTTGGCATGCACGCGTTCTCGGTACGGTTCCCCTCTGCTCCCTCCAATCGACTTTGTAGCCGACCACCCTTTTTTGTTTCTGATCAGAGAAGAGTTTAGTGGAACCATACTCTTTGTTGGAAAGGTTGTCAATCCTCTTGATGGGTGA

Protein sequence

>MS.gene066945.t1

MVMQNLIGKSFTNLTNVSMNITKHLLSNQNLKEKNVVFSPLSLNTVLSMIATGSEGPTQKQLLSFLQSESTGDLKSLCSHLVSSVLFGARTSGPCLSYVNGVWVEQTIPLQPSFKQLMTTDFKAAFAAVDFVNKADEAREEVNLWAEKKTKGLIQDLLPCGSVHSLTRLIFANALYFKGVWEQQFDTLKTKDYDFDLLNGKSVKVPFMTSKNKQFISSFDGFKVLGLPYKQGKDGRAFSIYIFLPDEKDGLSALIDKVASDSEFLEQKLPREEVKVGKFRIPRFNISFEIEASELLKKLGLALPFSMGGLTKMVDSPISQELYVSGIFQKSFIEVNEEGTKAAAVTVSLACTRSRYGSPLLPPIDFVADHPFLFLIREEFSGTILFVGKVVNPLDG