Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067165.t1 | XP_003617922.1 | 82.4 | 386 | 2 | 1 | 1 | 320 | 88 | 473 | 7.50E-171 | 609.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067165.t1 | Q9ZW34 | 67.8 | 385 | 58 | 1 | 1 | 319 | 88 | 472 | 6.7e-144 | 511.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067165.t1 | G7K4W1 | 82.4 | 386 | 2 | 1 | 1 | 320 | 88 | 473 | 5.4e-171 | 609.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene067165 | 0.842991 | 1.84E-58 | -1.69E-46 |
MS.gene056507 | MS.gene067165 | 0.801504 | 8.73E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
37938 | gene | 7261 | 14817 | 7261 | ID=MS.gene067165 |
37938 | mRNA | 7261 | 14817 | 7261 | ID=MS.gene067165.t1;Parent=MS.gene067165 |
37938 | exon | 14643 | 14817 | 14643 | ID=MS.gene067165.t1.exon1;Parent=MS.gene067165.t1 |
37938 | CDS | 14643 | 14817 | 14643 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 13695 | 13766 | 13695 | ID=MS.gene067165.t1.exon2;Parent=MS.gene067165.t1 |
37938 | CDS | 13695 | 13766 | 13695 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 13472 | 13588 | 13472 | ID=MS.gene067165.t1.exon3;Parent=MS.gene067165.t1 |
37938 | CDS | 13472 | 13588 | 13472 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 12280 | 12360 | 12280 | ID=MS.gene067165.t1.exon4;Parent=MS.gene067165.t1 |
37938 | CDS | 12280 | 12360 | 12280 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 11982 | 12058 | 11982 | ID=MS.gene067165.t1.exon5;Parent=MS.gene067165.t1 |
37938 | CDS | 11982 | 12058 | 11982 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 10881 | 10984 | 10881 | ID=MS.gene067165.t1.exon6;Parent=MS.gene067165.t1 |
37938 | CDS | 10881 | 10984 | 10881 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 9505 | 9603 | 9505 | ID=MS.gene067165.t1.exon7;Parent=MS.gene067165.t1 |
37938 | CDS | 9505 | 9603 | 9505 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 9322 | 9407 | 9322 | ID=MS.gene067165.t1.exon8;Parent=MS.gene067165.t1 |
37938 | CDS | 9322 | 9407 | 9322 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 8633 | 8719 | 8633 | ID=MS.gene067165.t1.exon9;Parent=MS.gene067165.t1 |
37938 | CDS | 8633 | 8719 | 8633 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
37938 | exon | 7261 | 7326 | 7261 | ID=MS.gene067165.t1.exon10;Parent=MS.gene067165.t1 |
37938 | CDS | 7261 | 7326 | 7261 | ID=cds.MS.gene067165.t1;Parent=MS.gene067165.t1 |
Gene Sequence |
Protein sequence |