Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067280.t1 | XP_013444598.1 | 85.3 | 394 | 58 | 0 | 20 | 413 | 4 | 397 | 2.80E-186 | 661.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067280.t1 | Q9S7T8 | 54.5 | 389 | 164 | 5 | 33 | 411 | 5 | 390 | 7.6e-116 | 418.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067280.t1 | A0A072TP44 | 85.3 | 394 | 58 | 0 | 20 | 413 | 4 | 397 | 2.0e-186 | 661.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031697 | MS.gene067280 | PPI |
| MS.gene065945 | MS.gene067280 | PPI |
| MS.gene067280 | MS.gene045585 | PPI |
| MS.gene067280 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene067280 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067280.t1 | MTR_8g027395 | 85.279 | 394 | 58 | 0 | 20 | 413 | 4 | 397 | 0.0 | 686 |
| MS.gene067280.t1 | MTR_8g027420 | 85.492 | 386 | 45 | 1 | 28 | 413 | 1 | 375 | 0.0 | 665 |
| MS.gene067280.t1 | MTR_4g088535 | 75.591 | 381 | 77 | 1 | 32 | 412 | 6 | 370 | 0.0 | 571 |
| MS.gene067280.t1 | MTR_4g088525 | 75.623 | 361 | 88 | 0 | 52 | 412 | 8 | 368 | 0.0 | 554 |
| MS.gene067280.t1 | MTR_3g018740 | 73.698 | 384 | 98 | 2 | 31 | 411 | 3 | 386 | 0.0 | 544 |
| MS.gene067280.t1 | MTR_3g101010 | 71.576 | 387 | 106 | 1 | 31 | 413 | 3 | 389 | 0.0 | 540 |
| MS.gene067280.t1 | MTR_4g045707 | 69.974 | 383 | 113 | 2 | 33 | 413 | 6 | 388 | 0.0 | 524 |
| MS.gene067280.t1 | MTR_2g045980 | 66.667 | 387 | 120 | 3 | 31 | 411 | 3 | 386 | 1.85e-177 | 500 |
| MS.gene067280.t1 | MTR_3g048000 | 63.145 | 407 | 123 | 5 | 9 | 412 | 9 | 391 | 4.69e-176 | 497 |
| MS.gene067280.t1 | MTR_2g046030 | 66.150 | 387 | 122 | 3 | 31 | 411 | 3 | 386 | 5.90e-176 | 496 |
| MS.gene067280.t1 | MTR_3g101030 | 62.935 | 402 | 125 | 5 | 34 | 413 | 30 | 429 | 5.29e-173 | 490 |
| MS.gene067280.t1 | MTR_3g101180 | 65.228 | 394 | 123 | 4 | 33 | 412 | 6 | 399 | 5.77e-173 | 489 |
| MS.gene067280.t1 | MTR_8g461160 | 64.599 | 387 | 129 | 2 | 33 | 411 | 6 | 392 | 2.20e-172 | 488 |
| MS.gene067280.t1 | MTR_7g050810 | 61.692 | 402 | 144 | 3 | 20 | 413 | 5 | 404 | 1.50e-170 | 483 |
| MS.gene067280.t1 | MTR_3g101130 | 62.595 | 393 | 136 | 3 | 28 | 413 | 1 | 389 | 4.23e-167 | 474 |
| MS.gene067280.t1 | MTR_7g451890 | 60.870 | 391 | 145 | 2 | 31 | 413 | 12 | 402 | 1.35e-165 | 471 |
| MS.gene067280.t1 | MTR_7g050750 | 61.125 | 391 | 144 | 2 | 31 | 413 | 6 | 396 | 1.54e-165 | 470 |
| MS.gene067280.t1 | MTR_7g047780 | 61.381 | 391 | 143 | 2 | 31 | 413 | 12 | 402 | 3.01e-164 | 467 |
| MS.gene067280.t1 | MTR_3g101050 | 63.446 | 383 | 117 | 5 | 35 | 411 | 31 | 396 | 6.61e-154 | 441 |
| MS.gene067280.t1 | MTR_3g015620 | 58.473 | 419 | 125 | 5 | 1 | 411 | 1 | 378 | 2.53e-150 | 431 |
| MS.gene067280.t1 | MTR_3g102920 | 56.220 | 418 | 137 | 7 | 3 | 412 | 30 | 409 | 7.64e-144 | 416 |
| MS.gene067280.t1 | MTR_3g101200 | 54.637 | 399 | 150 | 5 | 20 | 412 | 18 | 391 | 1.81e-133 | 389 |
| MS.gene067280.t1 | MTR_3g101190 | 57.382 | 359 | 94 | 3 | 55 | 413 | 13 | 312 | 1.28e-130 | 378 |
| MS.gene067280.t1 | MTR_3g100995 | 66.406 | 256 | 81 | 3 | 161 | 413 | 11 | 264 | 4.51e-116 | 339 |
| MS.gene067280.t1 | MTR_3g100010 | 59.032 | 310 | 79 | 3 | 58 | 334 | 42 | 336 | 8.40e-116 | 342 |
| MS.gene067280.t1 | MTR_3g018747 | 67.181 | 259 | 67 | 3 | 157 | 411 | 9 | 253 | 7.42e-114 | 333 |
| MS.gene067280.t1 | MTR_7g050830 | 53.943 | 317 | 113 | 3 | 31 | 325 | 14 | 319 | 2.55e-110 | 327 |
| MS.gene067280.t1 | MTR_3g015760 | 59.286 | 280 | 104 | 5 | 138 | 411 | 4 | 279 | 2.14e-99 | 298 |
| MS.gene067280.t1 | MTR_3g114310 | 44.501 | 391 | 198 | 10 | 38 | 413 | 24 | 410 | 5.41e-94 | 288 |
| MS.gene067280.t1 | MTR_3g100520 | 66.972 | 218 | 61 | 4 | 198 | 413 | 1 | 209 | 1.01e-92 | 278 |
| MS.gene067280.t1 | MTR_3g111160 | 63.636 | 220 | 76 | 3 | 198 | 413 | 1 | 220 | 1.13e-86 | 263 |
| MS.gene067280.t1 | MTR_3g101110 | 59.414 | 239 | 63 | 4 | 157 | 387 | 68 | 280 | 4.38e-86 | 264 |
| MS.gene067280.t1 | MTR_3g099970 | 66.327 | 196 | 49 | 2 | 157 | 352 | 20 | 198 | 9.55e-83 | 252 |
| MS.gene067280.t1 | MTR_2g046410 | 62.037 | 216 | 73 | 3 | 202 | 411 | 135 | 347 | 2.93e-81 | 254 |
| MS.gene067280.t1 | MTR_3g111150 | 63.006 | 173 | 40 | 2 | 36 | 208 | 2 | 150 | 3.06e-67 | 211 |
| MS.gene067280.t1 | MTR_3g102870 | 64.780 | 159 | 56 | 0 | 222 | 380 | 3 | 161 | 6.11e-67 | 211 |
| MS.gene067280.t1 | MTR_3g101020 | 55.914 | 186 | 53 | 3 | 231 | 413 | 1 | 160 | 9.56e-61 | 194 |
| MS.gene067280.t1 | MTR_3g101150 | 61.392 | 158 | 53 | 1 | 263 | 412 | 1 | 158 | 4.14e-58 | 187 |
| MS.gene067280.t1 | MTR_3g100990 | 66.000 | 150 | 50 | 1 | 33 | 182 | 5 | 153 | 1.25e-55 | 191 |
| MS.gene067280.t1 | MTR_4g093550 | 66.292 | 89 | 30 | 0 | 28 | 116 | 1 | 89 | 2.05e-33 | 120 |
| MS.gene067280.t1 | MTR_6g046890 | 65.278 | 72 | 25 | 0 | 41 | 112 | 7 | 78 | 6.40e-22 | 91.3 |
| MS.gene067280.t1 | MTR_3g101140 | 60.870 | 69 | 22 | 1 | 350 | 413 | 48 | 116 | 3.15e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067280.t1 | AT1G47710 | 54.499 | 389 | 164 | 5 | 33 | 411 | 5 | 390 | 1.03e-148 | 427 |
| MS.gene067280.t1 | AT1G47710 | 54.020 | 398 | 168 | 6 | 26 | 411 | 23 | 417 | 3.42e-148 | 427 |
| MS.gene067280.t1 | AT2G25240 | 50.259 | 386 | 180 | 7 | 31 | 410 | 3 | 382 | 1.10e-126 | 371 |
| MS.gene067280.t1 | AT3G45220 | 46.667 | 390 | 196 | 4 | 31 | 410 | 3 | 390 | 2.12e-124 | 365 |
| MS.gene067280.t1 | AT2G26390 | 48.223 | 394 | 180 | 8 | 31 | 410 | 3 | 386 | 5.50e-121 | 357 |
| MS.gene067280.t1 | AT1G64030 | 43.557 | 388 | 188 | 5 | 33 | 410 | 5 | 371 | 3.37e-102 | 308 |
| MS.gene067280.t1 | AT1G62170 | 41.414 | 396 | 198 | 6 | 27 | 410 | 58 | 431 | 2.40e-101 | 308 |
| MS.gene067280.t1 | AT2G14540 | 44.089 | 406 | 192 | 7 | 16 | 410 | 16 | 397 | 1.08e-100 | 305 |
| MS.gene067280.t1 | AT1G62170 | 38.695 | 429 | 196 | 8 | 27 | 410 | 58 | 464 | 2.77e-94 | 291 |
| MS.gene067280.t1 | AT2G35580 | 40.050 | 402 | 198 | 8 | 18 | 410 | 4 | 371 | 1.44e-89 | 276 |
| MS.gene067280.t1 | AT1G64010 | 46.296 | 216 | 92 | 4 | 198 | 410 | 1 | 195 | 2.87e-61 | 197 |
| MS.gene067280.t1 | AT1G64010 | 46.269 | 201 | 84 | 4 | 213 | 410 | 2 | 181 | 1.40e-55 | 182 |
| MS.gene067280.t1 | AT1G62160 | 36.735 | 196 | 100 | 5 | 220 | 410 | 42 | 218 | 3.53e-34 | 127 |
| MS.gene067280.t1 | AT1G63280 | 53.390 | 118 | 51 | 2 | 154 | 269 | 5 | 120 | 5.87e-34 | 123 |
| MS.gene067280.t1 | AT1G51330 | 53.571 | 112 | 49 | 3 | 155 | 263 | 29 | 140 | 1.31e-26 | 105 |
| MS.gene067280.t1 | AT1G64020 | 34.211 | 114 | 68 | 4 | 38 | 147 | 10 | 120 | 2.46e-12 | 63.9 |
Find 87 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTTGAATCTTGGAATT+TGG | 0.125681 | 8.2:-70560187 | None:intergenic |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.2:+70559763 | MS.gene067280:CDS |
| GTGAGTTTACCTTTCTCTTC+TGG | 0.237208 | 8.2:+70560251 | MS.gene067280:CDS |
| CTCAAAGATGCTGCTTCTTC+TGG | 0.245520 | 8.2:+70558920 | MS.gene067280:CDS |
| GGAGTAATCCATTTCCTAAT+TGG | 0.264163 | 8.2:+70559892 | MS.gene067280:CDS |
| TATTTGCTTGTCCTCCAATT+AGG | 0.267781 | 8.2:-70559906 | None:intergenic |
| TCAAGGTTGCTGCTCATAAA+AGG | 0.308829 | 8.2:-70559966 | None:intergenic |
| AACCGTGTCATCTGATTATA+AGG | 0.319424 | 8.2:+70559015 | MS.gene067280:CDS |
| TCCTGCAAAGAGGATTGTTT+GGG | 0.328604 | 8.2:-70560474 | None:intergenic |
| ACCCAAACAATCCTCTTTGC+AGG | 0.334512 | 8.2:+70560473 | MS.gene067280:CDS |
| CCAAATGAAAATTTGAATCT+TGG | 0.344733 | 8.2:-70560194 | None:intergenic |
| GTCCTGCAAAGAGGATTGTT+TGG | 0.348426 | 8.2:-70560475 | None:intergenic |
| CTTGTCCTCCAATTAGGAAA+TGG | 0.370502 | 8.2:-70559900 | None:intergenic |
| CATCAAAAGCACTAATAAAC+TGG | 0.379690 | 8.2:-70559989 | None:intergenic |
| CCGTTTGTTGATTGAATCAC+AGG | 0.404344 | 8.2:-70558606 | None:intergenic |
| ATCATTGCTGCTGGCTCTGA+GGG | 0.408699 | 8.2:+70558809 | MS.gene067280:CDS |
| AAACGGAAAAGAACGGTTCT+TGG | 0.412748 | 8.2:+70558623 | MS.gene067280:CDS |
| GAAGCTGCTGCGACCACTGC+TGG | 0.413652 | 8.2:+70560371 | MS.gene067280:CDS |
| CAAAGTAACATACCTTGTTC+AGG | 0.425889 | 8.2:-70559060 | None:intergenic |
| AAGTTCTGAATCCTCTTGTT+GGG | 0.429816 | 8.2:+70560498 | MS.gene067280:CDS |
| GCTATAAAATCTATTCCTCT+TGG | 0.436774 | 8.2:-70560413 | None:intergenic |
| CAAGTTCTGAATCCTCTTGT+TGG | 0.439955 | 8.2:+70560497 | MS.gene067280:CDS |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.2:+70560227 | MS.gene067280:CDS |
| CTCTTTCGCCAATGGTGTGT+GGG | 0.444711 | 8.2:+70558955 | MS.gene067280:CDS |
| CCTCGCCTCTCTTTCGCCAA+TGG | 0.447900 | 8.2:+70558947 | MS.gene067280:CDS |
| GTTCTCAGCATCATTGCTGC+TGG | 0.450530 | 8.2:+70558800 | MS.gene067280:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.2:+70559764 | MS.gene067280:CDS |
| AGATGACACGGTTTCTTTGA+AGG | 0.458100 | 8.2:-70559005 | None:intergenic |
| TCTCTAATTAGAAATAGAAA+AGG | 0.472534 | 8.2:-70560443 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.2:+70559811 | MS.gene067280:CDS |
| CAGAAGAAGCAGCATCTTTG+AGG | 0.479221 | 8.2:-70558919 | None:intergenic |
| TAAGGCCACTTTGTCTTCTG+TGG | 0.483558 | 8.2:+70559033 | MS.gene067280:CDS |
| CTTCGTCTTCCTTATAAACA+AGG | 0.483822 | 8.2:+70560023 | MS.gene067280:CDS |
| CATCATTGCTGCTGGCTCTG+AGG | 0.484489 | 8.2:+70558808 | MS.gene067280:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.2:+70560284 | MS.gene067280:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.2:+70559810 | MS.gene067280:CDS |
| GAAGGAAGGTTGAAGACAAA+GGG | 0.489318 | 8.2:-70558987 | None:intergenic |
| CATCTTTGAGGAGGACAGAA+AGG | 0.490209 | 8.2:-70558907 | None:intergenic |
| GAAAGACTTGTGAAATATGT+TGG | 0.499945 | 8.2:-70560324 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 8.2:-70560260 | None:intergenic |
| TGCTGCGACCACTGCTGGAA+AGG | 0.518525 | 8.2:+70560376 | MS.gene067280:CDS |
| CTCTAATTAGAAATAGAAAA+GGG | 0.520858 | 8.2:-70560442 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.2:-70558724 | None:intergenic |
| GGTTGGTGCTTGATTCATCA+AGG | 0.525769 | 8.2:-70558688 | None:intergenic |
| AAAGATGCTGCTTCTTCTGG+TGG | 0.527819 | 8.2:+70558923 | MS.gene067280:CDS |
| AGTTTACCTTTCTCTTCTGG+AGG | 0.529550 | 8.2:+70560254 | MS.gene067280:CDS |
| GTAATCCATTTCCTAATTGG+AGG | 0.529962 | 8.2:+70559895 | MS.gene067280:CDS |
| GACACGGTTTCTTTGAAGGA+AGG | 0.532013 | 8.2:-70559001 | None:intergenic |
| TCTCTTTCGCCAATGGTGTG+TGG | 0.536811 | 8.2:+70558954 | MS.gene067280:CDS |
| CAATGATGCTGAGAACAACT+TGG | 0.536897 | 8.2:-70558793 | None:intergenic |
| TGAATCAAAAGAAGAAGAAG+AGG | 0.537075 | 8.2:+70558649 | MS.gene067280:CDS |
| TAGAAATAGAAAAGGGTGAT+CGG | 0.543745 | 8.2:-70560435 | None:intergenic |
| TTCTGTGGATTTCCTGAACA+AGG | 0.543973 | 8.2:+70559048 | MS.gene067280:CDS |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.2:-70558705 | None:intergenic |
| CCTGTGATTCAATCAACAAA+CGG | 0.556480 | 8.2:+70558606 | MS.gene067280:CDS |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.2:+70560220 | MS.gene067280:CDS |
| TGAAGGAAGGTTGAAGACAA+AGG | 0.562109 | 8.2:-70558988 | None:intergenic |
| TCGAGAAGCTGTTGTTGAGT+AGG | 0.564349 | 8.2:-70558833 | None:intergenic |
| AGAAGAAGAGGAACAAACAT+TGG | 0.565610 | 8.2:+70558661 | MS.gene067280:CDS |
| TTCATTGAAGTAAACGAGGA+AGG | 0.566637 | 8.2:+70560344 | MS.gene067280:CDS |
| TGACTGAGCTGCCATTCAGA+AGG | 0.569757 | 8.2:-70559938 | None:intergenic |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.2:-70558723 | None:intergenic |
| TGCGACCACTGCTGGAAAGG+TGG | 0.571473 | 8.2:+70560379 | MS.gene067280:CDS |
| CGTTTGTTGATTGAATCACA+GGG | 0.575081 | 8.2:-70558605 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.2:-70560313 | None:intergenic |
| AAGCACTAATAAACTGGTCA+AGG | 0.577273 | 8.2:-70559983 | None:intergenic |
| TCAGAACTTGTCCTGCAAAG+AGG | 0.588007 | 8.2:-70560484 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.2:-70558709 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594662 | 8.2:+70560091 | MS.gene067280:CDS |
| ACTATCAGCTATGGTTGAGA+AGG | 0.605629 | 8.2:+70560100 | MS.gene067280:CDS |
| AAAAGAGTTGAGATGATCAG+TGG | 0.610674 | 8.2:-70558873 | None:intergenic |
| CAAGGCCACCTTTCCAGCAG+TGG | 0.617406 | 8.2:-70560384 | None:intergenic |
| AGTTAAGATCACCCAACAAG+AGG | 0.625128 | 8.2:-70560509 | None:intergenic |
| ACACACCATTGGCGAAAGAG+AGG | 0.625171 | 8.2:-70558952 | None:intergenic |
| TTTCGCCAATGGTGTGTGGG+TGG | 0.626286 | 8.2:+70558958 | MS.gene067280:CDS |
| AGAACAACTTGGAGAGACAA+TGG | 0.632240 | 8.2:-70558782 | None:intergenic |
| AATCAACAAACGGAAAAGAA+CGG | 0.637048 | 8.2:+70558616 | MS.gene067280:CDS |
| AAGAAGCAGCATCTTTGAGG+AGG | 0.648399 | 8.2:-70558916 | None:intergenic |
| GAAATCCACAGAAGACAAAG+TGG | 0.650231 | 8.2:-70559038 | None:intergenic |
| GGCCTTATAATCAGATGACA+CGG | 0.650681 | 8.2:-70559017 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.2:-70558729 | None:intergenic |
| GATCAGTGGATTTGAAACGA+AGG | 0.668797 | 8.2:-70558859 | None:intergenic |
| GTCTTTCATTGAAGTAAACG+AGG | 0.668981 | 8.2:+70560340 | MS.gene067280:CDS |
| TATTCCTCTTGGAATACACA+AGG | 0.674946 | 8.2:-70560402 | None:intergenic |
| GTGGCCTTGTGTATTCCAAG+AGG | 0.698635 | 8.2:+70560398 | MS.gene067280:CDS |
| AAGCTGTCAACTGACCCTTG+AGG | 0.752414 | 8.2:-70559825 | None:intergenic |
| CCATTGGCGAAAGAGAGGCG+AGG | 0.781616 | 8.2:-70558947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTGATATGTTTTAA+AGG | + | chr8.2:70559731-70559750 | MS.gene067280:intron | 10.0% |
| !!! | TTTCAAATTTGATGTTTTAA+AGG | + | chr8.2:70559684-70559703 | MS.gene067280:intron | 15.0% |
| !! | AAAATTTGAATCTTGGAATT+TGG | - | chr8.2:70560190-70560209 | None:intergenic | 20.0% |
| !! | CTCTAATTAGAAATAGAAAA+GGG | - | chr8.2:70560445-70560464 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAGAAA+AGG | - | chr8.2:70560446-70560465 | None:intergenic | 20.0% |
| !! | TGTAAAATAGTCATTTGAAT+AGG | + | chr8.2:70559409-70559428 | MS.gene067280:intron | 20.0% |
| !!! | AATGCATTTCTTGAAATTTT+TGG | + | chr8.2:70559133-70559152 | MS.gene067280:intron | 20.0% |
| !!! | CAAGATTCAAATTTTCATTT+GGG | + | chr8.2:70560195-70560214 | MS.gene067280:CDS | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | - | chr8.2:70560035-70560054 | None:intergenic | 20.0% |
| ! | AGAAGAAATTAACTTTCTGT+TGG | - | chr8.2:70559615-70559634 | None:intergenic | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.2:70559810-70559829 | MS.gene067280:CDS | 25.0% |
| ! | CCAAATGAAAATTTGAATCT+TGG | - | chr8.2:70560197-70560216 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.2:70559764-70559783 | MS.gene067280:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.2:70559763-70559782 | MS.gene067280:CDS | 25.0% |
| ! | TGTGACACAATTATAATACA+TGG | - | chr8.2:70559111-70559130 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.2:70559811-70559830 | MS.gene067280:CDS | 25.0% |
| ! | TTGGATGCTAAAAAACAAAA+AGG | - | chr8.2:70559560-70559579 | None:intergenic | 25.0% |
| ! | TTTCTTCCAAATGAAAAAGA+TGG | + | chr8.2:70560077-70560096 | MS.gene067280:CDS | 25.0% |
| !! | CCAAGATTCAAATTTTCATT+TGG | + | chr8.2:70560194-70560213 | MS.gene067280:CDS | 25.0% |
| !!! | GCTAATGCATTGTATTTTAA+AGG | + | chr8.2:70559864-70559883 | MS.gene067280:CDS | 25.0% |
| AAGCTTCCGTATAAAAAAGT+AGG | + | chr8.2:70560152-70560171 | MS.gene067280:CDS | 30.0% | |
| AATCAACAAACGGAAAAGAA+CGG | + | chr8.2:70558616-70558635 | MS.gene067280:CDS | 30.0% | |
| ACATCTGTGTTTATCTAGAA+GGG | + | chr8.2:70559443-70559462 | MS.gene067280:intron | 30.0% | |
| GAAAGACTTGTGAAATATGT+TGG | - | chr8.2:70560327-70560346 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.2:70560316-70560335 | None:intergenic | 30.0% | |
| GCTATAAAATCTATTCCTCT+TGG | - | chr8.2:70560416-70560435 | None:intergenic | 30.0% | |
| GTTTATCTAGAAGGGAAAAA+AGG | + | chr8.2:70559451-70559470 | MS.gene067280:intron | 30.0% | |
| TACATCTGTGTTTATCTAGA+AGG | + | chr8.2:70559442-70559461 | MS.gene067280:intron | 30.0% | |
| TAGAAATAGAAAAGGGTGAT+CGG | - | chr8.2:70560438-70560457 | None:intergenic | 30.0% | |
| TGAATCAAAAGAAGAAGAAG+AGG | + | chr8.2:70558649-70558668 | MS.gene067280:CDS | 30.0% | |
| TGCTAAAAAACAAAAAGGAG+AGG | - | chr8.2:70559555-70559574 | None:intergenic | 30.0% | |
| TGCTTCTTCAAAAGAATGAA+AGG | + | chr8.2:70559386-70559405 | MS.gene067280:intron | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | + | chr8.2:70559308-70559327 | MS.gene067280:intron | 30.0% | |
| ! | CAGTTTATTAGTGCTTTTGA+TGG | + | chr8.2:70559990-70560009 | MS.gene067280:CDS | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.2:70559927-70559946 | MS.gene067280:CDS | 30.0% |
| !! | CATCAAAAGCACTAATAAAC+TGG | - | chr8.2:70559992-70560011 | None:intergenic | 30.0% |
| !! | CATTGTATTTTAAAGGAGCA+TGG | + | chr8.2:70559871-70559890 | MS.gene067280:CDS | 30.0% |
| !! | GATAGTCCATCTTTTTCATT+TGG | - | chr8.2:70560086-70560105 | None:intergenic | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.2:70558738-70558757 | None:intergenic | 30.0% |
| !!! | CCTACTCCTACTTTTTTATA+CGG | - | chr8.2:70560161-70560180 | None:intergenic | 30.0% |
| !!! | CTGTTACTCTAGAATCATTT+TGG | - | chr8.2:70559521-70559540 | None:intergenic | 30.0% |
| !!! | CTTGCACTTGCTTTTTTAAA+TGG | + | chr8.2:70559187-70559206 | MS.gene067280:intron | 30.0% |
| !!! | GTAGTTTTTTTCCTCTGTAT+AGG | + | chr8.2:70559347-70559366 | MS.gene067280:intron | 30.0% |
| !!! | TTGTTATTTTACCCTTAGTC+TGG | + | chr8.2:70559268-70559287 | MS.gene067280:intron | 30.0% |
| AAAAGAGTTGAGATGATCAG+TGG | - | chr8.2:70558876-70558895 | None:intergenic | 35.0% | |
| AACCGTGTCATCTGATTATA+AGG | + | chr8.2:70559015-70559034 | MS.gene067280:CDS | 35.0% | |
| AAGCACTAATAAACTGGTCA+AGG | - | chr8.2:70559986-70560005 | None:intergenic | 35.0% | |
| AGAAGAAGAGGAACAAACAT+TGG | + | chr8.2:70558661-70558680 | MS.gene067280:CDS | 35.0% | |
| CAAAGTAACATACCTTGTTC+AGG | - | chr8.2:70559063-70559082 | None:intergenic | 35.0% | |
| CCGTATAAAAAAGTAGGAGT+AGG | + | chr8.2:70560158-70560177 | MS.gene067280:CDS | 35.0% | |
| CCTGTGATTCAATCAACAAA+CGG | + | chr8.2:70558606-70558625 | MS.gene067280:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAACA+AGG | + | chr8.2:70560023-70560042 | MS.gene067280:CDS | 35.0% | |
| GGAGTAATCCATTTCCTAAT+TGG | + | chr8.2:70559892-70559911 | MS.gene067280:CDS | 35.0% | |
| GTAATCCATTTCCTAATTGG+AGG | + | chr8.2:70559895-70559914 | MS.gene067280:CDS | 35.0% | |
| GTCTTTCATTGAAGTAAACG+AGG | + | chr8.2:70560340-70560359 | MS.gene067280:CDS | 35.0% | |
| TAGTTGTTAACGATGCTAAC+TGG | + | chr8.2:70559226-70559245 | MS.gene067280:intron | 35.0% | |
| TATTCCTCTTGGAATACACA+AGG | - | chr8.2:70560405-70560424 | None:intergenic | 35.0% | |
| TATTTGCTTGTCCTCCAATT+AGG | - | chr8.2:70559909-70559928 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.2:70560220-70560239 | MS.gene067280:CDS | 35.0% | |
| TTAACGATGCTAACTGGATT+TGG | + | chr8.2:70559232-70559251 | MS.gene067280:intron | 35.0% | |
| TTCATTGAAGTAAACGAGGA+AGG | + | chr8.2:70560344-70560363 | MS.gene067280:CDS | 35.0% | |
| ! | CGTTTGTTGATTGAATCACA+GGG | - | chr8.2:70558608-70558627 | None:intergenic | 35.0% |
| ! | GGTCTAATTTTCACATACCA+CGG | - | chr8.2:70559594-70559613 | None:intergenic | 35.0% |
| ! | GTCTAATTTTCACATACCAC+GGG | - | chr8.2:70559593-70559612 | None:intergenic | 35.0% |
| ! | TCTAATTTTCACATACCACG+GGG | - | chr8.2:70559592-70559611 | None:intergenic | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | + | chr8.2:70560268-70560287 | MS.gene067280:CDS | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.2:70560091-70560110 | MS.gene067280:CDS | 35.0% |
| !! | AAGTTCTGAATCCTCTTGTT+GGG | + | chr8.2:70560498-70560517 | MS.gene067280:CDS | 35.0% |
| AAACGGAAAAGAACGGTTCT+TGG | + | chr8.2:70558623-70558642 | MS.gene067280:CDS | 40.0% | |
| ACAAGCTAAGTCCTATACAG+AGG | - | chr8.2:70559361-70559380 | None:intergenic | 40.0% | |
| ACTATCAGCTATGGTTGAGA+AGG | + | chr8.2:70560100-70560119 | MS.gene067280:CDS | 40.0% | |
| AGAACAACTTGGAGAGACAA+TGG | - | chr8.2:70558785-70558804 | None:intergenic | 40.0% | |
| AGATGACACGGTTTCTTTGA+AGG | - | chr8.2:70559008-70559027 | None:intergenic | 40.0% | |
| AGTTTACCTTTCTCTTCTGG+AGG | + | chr8.2:70560254-70560273 | MS.gene067280:CDS | 40.0% | |
| CAATGATGCTGAGAACAACT+TGG | - | chr8.2:70558796-70558815 | None:intergenic | 40.0% | |
| CTTGTCCTCCAATTAGGAAA+TGG | - | chr8.2:70559903-70559922 | None:intergenic | 40.0% | |
| GAAATCCACAGAAGACAAAG+TGG | - | chr8.2:70559041-70559060 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGACAAA+GGG | - | chr8.2:70558990-70559009 | None:intergenic | 40.0% | |
| GTGAGTTTACCTTTCTCTTC+TGG | + | chr8.2:70560251-70560270 | MS.gene067280:CDS | 40.0% | |
| TATACCAAGCCAGGATGAAA+TGG | - | chr8.2:70559320-70559339 | None:intergenic | 40.0% | |
| TCAAGGTTGCTGCTCATAAA+AGG | - | chr8.2:70559969-70559988 | None:intergenic | 40.0% | |
| TCCTGCAAAGAGGATTGTTT+GGG | - | chr8.2:70560477-70560496 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.2:70560227-70560246 | MS.gene067280:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGACAA+AGG | - | chr8.2:70558991-70559010 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.2:70560271-70560290 | MS.gene067280:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.2:70559783-70559802 | MS.gene067280:CDS | 40.0% | |
| TTCTGTGGATTTCCTGAACA+AGG | + | chr8.2:70559048-70559067 | MS.gene067280:CDS | 40.0% | |
| ! | CCGTTTGTTGATTGAATCAC+AGG | - | chr8.2:70558609-70558628 | None:intergenic | 40.0% |
| ! | GATCAGTGGATTTGAAACGA+AGG | - | chr8.2:70558862-70558881 | None:intergenic | 40.0% |
| ! | GGCCTTATAATCAGATGACA+CGG | - | chr8.2:70559020-70559039 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.2:70560284-70560303 | MS.gene067280:CDS | 40.0% |
| !! | CAAGTTCTGAATCCTCTTGT+TGG | + | chr8.2:70560497-70560516 | MS.gene067280:CDS | 40.0% |
| AAGCTTCTGAGCCAGACTAA+GGG | - | chr8.2:70559282-70559301 | None:intergenic | 45.0% | |
| ACCCAAACAATCCTCTTTGC+AGG | + | chr8.2:70560473-70560492 | MS.gene067280:CDS | 45.0% | |
| ACTCTTCTGTATACCAAGCC+AGG | - | chr8.2:70559329-70559348 | None:intergenic | 45.0% | |
| ATCCAACTAATATAGCCCCG+TGG | + | chr8.2:70559574-70559593 | MS.gene067280:intron | 45.0% | |
| CAGAAGAAGCAGCATCTTTG+AGG | - | chr8.2:70558922-70558941 | None:intergenic | 45.0% | |
| CTTTCCATTTCATCCTGGCT+TGG | + | chr8.2:70559313-70559332 | MS.gene067280:intron | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | - | chr8.2:70560263-70560282 | None:intergenic | 45.0% | |
| GTCCTGCAAAGAGGATTGTT+TGG | - | chr8.2:70560478-70560497 | None:intergenic | 45.0% | |
| TACCACGGGGCTATATTAGT+TGG | - | chr8.2:70559579-70559598 | None:intergenic | 45.0% | |
| TCAGAACTTGTCCTGCAAAG+AGG | - | chr8.2:70560487-70560506 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGAGT+AGG | - | chr8.2:70558836-70558855 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.2:70558732-70558751 | None:intergenic | 45.0% | |
| ! | AAAGATGCTGCTTCTTCTGG+TGG | + | chr8.2:70558923-70558942 | MS.gene067280:CDS | 45.0% |
| ! | AAGAAGCAGCATCTTTGAGG+AGG | - | chr8.2:70558919-70558938 | None:intergenic | 45.0% |
| ! | CATCTTTGAGGAGGACAGAA+AGG | - | chr8.2:70558910-70558929 | None:intergenic | 45.0% |
| ! | CTCAAAGATGCTGCTTCTTC+TGG | + | chr8.2:70558920-70558939 | MS.gene067280:CDS | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.2:70559004-70559023 | None:intergenic | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.2:70558691-70558710 | None:intergenic | 45.0% |
| ! | TAAGGCCACTTTGTCTTCTG+TGG | + | chr8.2:70559033-70559052 | MS.gene067280:CDS | 45.0% |
| AAGCTGTCAACTGACCCTTG+AGG | - | chr8.2:70559828-70559847 | None:intergenic | 50.0% | |
| ACACACCATTGGCGAAAGAG+AGG | - | chr8.2:70558955-70558974 | None:intergenic | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.2:70558727-70558746 | None:intergenic | 50.0% | |
| CTCTTTCGCCAATGGTGTGT+GGG | + | chr8.2:70558955-70558974 | MS.gene067280:CDS | 50.0% | |
| GAAGCTTCTGAGCCAGACTA+AGG | - | chr8.2:70559283-70559302 | None:intergenic | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.2:70558726-70558745 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.2:70558708-70558727 | None:intergenic | 50.0% | |
| GTTCTCAGCATCATTGCTGC+TGG | + | chr8.2:70558800-70558819 | MS.gene067280:CDS | 50.0% | |
| TCTCTTTCGCCAATGGTGTG+TGG | + | chr8.2:70558954-70558973 | MS.gene067280:CDS | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | - | chr8.2:70559941-70559960 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.2:70558712-70558731 | None:intergenic | 50.0% | |
| ! | CTTTTCCACCCACACACCAT+TGG | - | chr8.2:70558966-70558985 | None:intergenic | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+GGG | + | chr8.2:70558809-70558828 | MS.gene067280:CDS | 50.0% |
| !! | GTGGCCTTGTGTATTCCAAG+AGG | + | chr8.2:70560398-70560417 | MS.gene067280:CDS | 50.0% |
| TTTCGCCAATGGTGTGTGGG+TGG | + | chr8.2:70558958-70558977 | MS.gene067280:CDS | 55.0% | |
| !! | CATCATTGCTGCTGGCTCTG+AGG | + | chr8.2:70558808-70558827 | MS.gene067280:CDS | 55.0% |
| CAAGGCCACCTTTCCAGCAG+TGG | - | chr8.2:70560387-70560406 | None:intergenic | 60.0% | |
| CCATTGGCGAAAGAGAGGCG+AGG | - | chr8.2:70558950-70558969 | None:intergenic | 60.0% | |
| CCTCGCCTCTCTTTCGCCAA+TGG | + | chr8.2:70558947-70558966 | MS.gene067280:CDS | 60.0% | |
| TGCGACCACTGCTGGAAAGG+TGG | + | chr8.2:70560379-70560398 | MS.gene067280:CDS | 60.0% | |
| TGCTGCGACCACTGCTGGAA+AGG | + | chr8.2:70560376-70560395 | MS.gene067280:CDS | 60.0% | |
| GAAGCTGCTGCGACCACTGC+TGG | + | chr8.2:70560371-70560390 | MS.gene067280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 70558599 | 70560523 | 70558599 | ID=MS.gene067280 |
| chr8.2 | mRNA | 70558599 | 70560523 | 70558599 | ID=MS.gene067280.t1;Parent=MS.gene067280 |
| chr8.2 | exon | 70558599 | 70559069 | 70558599 | ID=MS.gene067280.t1.exon1;Parent=MS.gene067280.t1 |
| chr8.2 | CDS | 70558599 | 70559069 | 70558599 | ID=cds.MS.gene067280.t1;Parent=MS.gene067280.t1 |
| chr8.2 | exon | 70559753 | 70560523 | 70559753 | ID=MS.gene067280.t1.exon2;Parent=MS.gene067280.t1 |
| chr8.2 | CDS | 70559753 | 70560523 | 70559753 | ID=cds.MS.gene067280.t1;Parent=MS.gene067280.t1 |
| Gene Sequence |
| Protein sequence |
