Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067282.t1 | XP_013444598.1 | 86.8 | 386 | 51 | 0 | 1 | 386 | 12 | 397 | 4.20E-184 | 654.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067282.t1 | Q9S7T8 | 53.1 | 386 | 174 | 4 | 6 | 384 | 5 | 390 | 5.3e-111 | 402.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067282.t1 | A0A072TP44 | 86.8 | 386 | 51 | 0 | 1 | 386 | 12 | 397 | 3.0e-184 | 654.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene067282 | PPI |
| MS.gene067282 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene067282 | PPI |
| MS.gene031697 | MS.gene067282 | PPI |
| MS.gene067282 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067282.t1 | MTR_8g027395 | 86.788 | 386 | 51 | 0 | 1 | 386 | 12 | 397 | 0.0 | 676 |
| MS.gene067282.t1 | MTR_8g027420 | 85.492 | 386 | 45 | 1 | 1 | 386 | 1 | 375 | 0.0 | 653 |
| MS.gene067282.t1 | MTR_4g088525 | 75.069 | 361 | 90 | 0 | 25 | 385 | 8 | 368 | 0.0 | 548 |
| MS.gene067282.t1 | MTR_4g088535 | 72.966 | 381 | 87 | 2 | 5 | 385 | 6 | 370 | 0.0 | 547 |
| MS.gene067282.t1 | MTR_4g045707 | 68.041 | 388 | 122 | 2 | 1 | 386 | 1 | 388 | 0.0 | 515 |
| MS.gene067282.t1 | MTR_3g018740 | 70.573 | 384 | 110 | 2 | 4 | 384 | 3 | 386 | 0.0 | 513 |
| MS.gene067282.t1 | MTR_3g101010 | 68.734 | 387 | 117 | 1 | 4 | 386 | 3 | 389 | 0.0 | 508 |
| MS.gene067282.t1 | MTR_2g045980 | 64.599 | 387 | 128 | 4 | 4 | 384 | 3 | 386 | 9.27e-169 | 477 |
| MS.gene067282.t1 | MTR_2g046030 | 63.566 | 387 | 132 | 4 | 4 | 384 | 3 | 386 | 2.72e-167 | 473 |
| MS.gene067282.t1 | MTR_8g461160 | 62.755 | 392 | 138 | 2 | 1 | 384 | 1 | 392 | 1.52e-165 | 469 |
| MS.gene067282.t1 | MTR_3g048000 | 63.588 | 379 | 119 | 3 | 9 | 385 | 30 | 391 | 6.56e-164 | 465 |
| MS.gene067282.t1 | MTR_3g101180 | 62.944 | 394 | 132 | 4 | 6 | 385 | 6 | 399 | 8.31e-164 | 465 |
| MS.gene067282.t1 | MTR_3g101030 | 60.697 | 402 | 134 | 5 | 7 | 386 | 30 | 429 | 2.81e-161 | 459 |
| MS.gene067282.t1 | MTR_3g101130 | 61.578 | 393 | 140 | 4 | 1 | 386 | 1 | 389 | 8.59e-161 | 457 |
| MS.gene067282.t1 | MTR_7g050810 | 59.591 | 391 | 150 | 2 | 4 | 386 | 14 | 404 | 1.01e-157 | 449 |
| MS.gene067282.t1 | MTR_7g047780 | 59.079 | 391 | 152 | 2 | 4 | 386 | 12 | 402 | 1.26e-155 | 444 |
| MS.gene067282.t1 | MTR_7g050750 | 58.312 | 391 | 155 | 2 | 4 | 386 | 6 | 396 | 2.22e-155 | 443 |
| MS.gene067282.t1 | MTR_7g451890 | 58.312 | 391 | 155 | 2 | 4 | 386 | 12 | 402 | 3.62e-155 | 443 |
| MS.gene067282.t1 | MTR_3g101050 | 59.067 | 386 | 129 | 5 | 8 | 384 | 31 | 396 | 1.51e-143 | 413 |
| MS.gene067282.t1 | MTR_3g015620 | 59.173 | 387 | 126 | 5 | 6 | 384 | 16 | 378 | 2.64e-139 | 402 |
| MS.gene067282.t1 | MTR_3g102920 | 57.480 | 381 | 118 | 6 | 13 | 385 | 65 | 409 | 1.46e-134 | 391 |
| MS.gene067282.t1 | MTR_3g101200 | 54.220 | 391 | 148 | 5 | 1 | 385 | 26 | 391 | 2.68e-126 | 369 |
| MS.gene067282.t1 | MTR_3g101190 | 54.596 | 359 | 104 | 2 | 28 | 386 | 13 | 312 | 7.00e-121 | 352 |
| MS.gene067282.t1 | MTR_3g100995 | 64.844 | 256 | 85 | 3 | 134 | 386 | 11 | 264 | 1.06e-111 | 327 |
| MS.gene067282.t1 | MTR_3g100010 | 57.742 | 310 | 83 | 4 | 31 | 307 | 42 | 336 | 5.15e-110 | 326 |
| MS.gene067282.t1 | MTR_3g018747 | 66.023 | 259 | 70 | 3 | 130 | 384 | 9 | 253 | 8.15e-110 | 322 |
| MS.gene067282.t1 | MTR_7g050830 | 51.420 | 317 | 121 | 3 | 4 | 298 | 14 | 319 | 1.13e-100 | 301 |
| MS.gene067282.t1 | MTR_3g114310 | 43.990 | 391 | 200 | 10 | 11 | 386 | 24 | 410 | 2.85e-96 | 293 |
| MS.gene067282.t1 | MTR_3g015760 | 56.786 | 280 | 111 | 5 | 111 | 384 | 4 | 279 | 2.33e-92 | 279 |
| MS.gene067282.t1 | MTR_3g100520 | 63.761 | 218 | 68 | 4 | 171 | 386 | 1 | 209 | 6.07e-88 | 265 |
| MS.gene067282.t1 | MTR_3g111160 | 63.636 | 220 | 76 | 3 | 171 | 386 | 1 | 220 | 1.02e-86 | 262 |
| MS.gene067282.t1 | MTR_3g101110 | 57.741 | 239 | 67 | 4 | 130 | 360 | 68 | 280 | 1.01e-81 | 251 |
| MS.gene067282.t1 | MTR_3g099970 | 65.816 | 196 | 50 | 2 | 130 | 325 | 20 | 198 | 1.04e-81 | 248 |
| MS.gene067282.t1 | MTR_2g046410 | 62.212 | 217 | 71 | 4 | 175 | 384 | 135 | 347 | 4.20e-80 | 249 |
| MS.gene067282.t1 | MTR_3g102870 | 64.780 | 159 | 56 | 0 | 195 | 353 | 3 | 161 | 3.32e-67 | 211 |
| MS.gene067282.t1 | MTR_3g111150 | 61.850 | 173 | 42 | 2 | 9 | 181 | 2 | 150 | 2.16e-64 | 203 |
| MS.gene067282.t1 | MTR_3g101020 | 54.839 | 186 | 55 | 3 | 204 | 386 | 1 | 160 | 4.38e-59 | 189 |
| MS.gene067282.t1 | MTR_3g101150 | 61.392 | 158 | 53 | 1 | 236 | 385 | 1 | 158 | 1.87e-57 | 185 |
| MS.gene067282.t1 | MTR_3g100990 | 70.543 | 129 | 38 | 0 | 6 | 134 | 5 | 133 | 5.43e-53 | 184 |
| MS.gene067282.t1 | MTR_4g093550 | 65.169 | 89 | 31 | 0 | 1 | 89 | 1 | 89 | 3.79e-31 | 114 |
| MS.gene067282.t1 | MTR_6g046890 | 55.814 | 86 | 33 | 1 | 14 | 94 | 7 | 92 | 2.01e-19 | 84.3 |
| MS.gene067282.t1 | MTR_3g101140 | 56.522 | 69 | 25 | 2 | 323 | 386 | 48 | 116 | 5.49e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067282.t1 | AT1G47710 | 53.109 | 386 | 174 | 4 | 6 | 384 | 5 | 390 | 2.29e-142 | 410 |
| MS.gene067282.t1 | AT1G47710 | 53.109 | 386 | 174 | 4 | 6 | 384 | 32 | 417 | 9.23e-142 | 409 |
| MS.gene067282.t1 | AT3G45220 | 46.410 | 390 | 197 | 4 | 4 | 383 | 3 | 390 | 6.48e-120 | 353 |
| MS.gene067282.t1 | AT2G25240 | 47.927 | 386 | 189 | 7 | 4 | 383 | 3 | 382 | 1.21e-117 | 347 |
| MS.gene067282.t1 | AT2G26390 | 46.667 | 390 | 192 | 7 | 4 | 383 | 3 | 386 | 5.97e-114 | 338 |
| MS.gene067282.t1 | AT1G64030 | 42.268 | 388 | 193 | 5 | 6 | 383 | 5 | 371 | 4.49e-98 | 297 |
| MS.gene067282.t1 | AT2G14540 | 44.246 | 391 | 183 | 7 | 4 | 383 | 31 | 397 | 1.98e-94 | 288 |
| MS.gene067282.t1 | AT1G62170 | 41.803 | 366 | 180 | 5 | 28 | 383 | 89 | 431 | 3.95e-93 | 286 |
| MS.gene067282.t1 | AT1G62170 | 38.346 | 399 | 180 | 6 | 28 | 383 | 89 | 464 | 3.14e-86 | 269 |
| MS.gene067282.t1 | AT2G35580 | 41.071 | 392 | 196 | 9 | 4 | 383 | 3 | 371 | 9.23e-86 | 265 |
| MS.gene067282.t1 | AT1G64010 | 44.907 | 216 | 95 | 4 | 171 | 383 | 1 | 195 | 3.53e-59 | 191 |
| MS.gene067282.t1 | AT1G64010 | 44.776 | 201 | 87 | 4 | 186 | 383 | 2 | 181 | 2.92e-53 | 175 |
| MS.gene067282.t1 | AT1G63280 | 52.542 | 118 | 52 | 2 | 127 | 242 | 5 | 120 | 3.06e-33 | 120 |
| MS.gene067282.t1 | AT1G62160 | 40.000 | 200 | 88 | 5 | 193 | 383 | 42 | 218 | 1.75e-32 | 122 |
| MS.gene067282.t1 | AT1G51330 | 53.571 | 112 | 49 | 3 | 128 | 236 | 29 | 140 | 2.89e-26 | 104 |
| MS.gene067282.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 11 | 120 | 10 | 120 | 5.81e-12 | 62.8 |
Find 87 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.2:+70568434 | MS.gene067282:CDS |
| AAGTTCTTCGTCTTCCTTAT+AGG | 0.196733 | 8.2:+70568689 | MS.gene067282:CDS |
| GTGAGTTTACCTTTCTCTTC+TGG | 0.237208 | 8.2:+70568922 | MS.gene067282:CDS |
| GGAGTAATCCATTTCCTAAT+TGG | 0.264163 | 8.2:+70568563 | MS.gene067282:CDS |
| TATTTGCTTGTCCTCCAATT+AGG | 0.267781 | 8.2:-70568577 | None:intergenic |
| TCAAGGTTGCTGCTCATAAA+AGG | 0.296458 | 8.2:-70568637 | None:intergenic |
| AACCGTGTCAACCGATTATA+AGG | 0.306401 | 8.2:+70567271 | MS.gene067282:CDS |
| AATCTTCTCTAATTAGAAAT+AGG | 0.325707 | 8.2:-70569119 | None:intergenic |
| GCTACAGCCAATGCTGGAAT+AGG | 0.327490 | 8.2:+70569048 | MS.gene067282:CDS |
| CCAGATGAAAATTTGAATCT+TGG | 0.348384 | 8.2:-70568865 | None:intergenic |
| CATGTTCTCAATCCTCTTGT+TGG | 0.365950 | 8.2:+70569168 | MS.gene067282:CDS |
| CTTGTCCTCCAATTAGGAAA+TGG | 0.370502 | 8.2:-70568571 | None:intergenic |
| CTACAGCCAATGCTGGAATA+GGG | 0.378345 | 8.2:+70569049 | MS.gene067282:CDS |
| ATGTTCTCAATCCTCTTGTT+GGG | 0.388158 | 8.2:+70569169 | MS.gene067282:CDS |
| GTCCGGCAAAGATGATCGTT+TGG | 0.388368 | 8.2:-70569146 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.390951 | 8.2:+70568748 | MS.gene067282:CDS |
| CCTACTCTCACTTGTTTACA+AGG | 0.391557 | 8.2:-70568829 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 8.2:-70567244 | None:intergenic |
| CACTTGTTTACAAGGAAGCT+TGG | 0.406222 | 8.2:-70568821 | None:intergenic |
| ACCCAAACGATCATCTTTGC+CGG | 0.414042 | 8.2:+70569144 | MS.gene067282:CDS |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.2:+70568898 | MS.gene067282:CDS |
| CGGAAGAAGCTGCATCTTTG+AGG | 0.445775 | 8.2:-70567175 | None:intergenic |
| ACTTGTTTACAAGGAAGCTT+GGG | 0.449179 | 8.2:-70568820 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 8.2:-70567243 | None:intergenic |
| TACAAGGAAGCTTGGGCTCT+AGG | 0.450782 | 8.2:-70568813 | None:intergenic |
| CAATGATGCTGAGGACAACT+TGG | 0.452304 | 8.2:-70567049 | None:intergenic |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.2:+70568435 | MS.gene067282:CDS |
| ATCATTGCTGCTGGCTCTGA+CGG | 0.455190 | 8.2:+70567065 | MS.gene067282:CDS |
| GTCCTCAGCATCATTGCTGC+TGG | 0.456068 | 8.2:+70567056 | MS.gene067282:CDS |
| GGGGCCATGTGTGTGCCAAC+TGG | 0.466848 | 8.2:+70569069 | MS.gene067282:CDS |
| ATTAAAGAAATTCTTTCTCA+AGG | 0.468450 | 8.2:+70568481 | MS.gene067282:CDS |
| GGTTGACACGGTTTCTTTGA+AGG | 0.468737 | 8.2:-70567261 | None:intergenic |
| TCCGGCAAAGATGATCGTTT+GGG | 0.479968 | 8.2:-70569145 | None:intergenic |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.2:+70568955 | MS.gene067282:CDS |
| TTAAAGAAATTCTTTCTCAA+GGG | 0.485536 | 8.2:+70568482 | MS.gene067282:CDS |
| AAGCTGTAATAAACTGATCA+AGG | 0.490584 | 8.2:-70568654 | None:intergenic |
| GAAGCTGCTACAGCCAATGC+TGG | 0.496627 | 8.2:+70569042 | MS.gene067282:CDS |
| GAAAGACTTGTGAAATATGT+TGG | 0.499945 | 8.2:-70568995 | None:intergenic |
| TTTATGAAATCAACGGAAGC+GGG | 0.500324 | 8.2:-70567299 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 8.2:-70568931 | None:intergenic |
| CTTCGTCTTCCTTATAGGCA+AGG | 0.509832 | 8.2:+70568694 | MS.gene067282:CDS |
| GAAAAGACGATGTTGTTGTC+TGG | 0.511591 | 8.2:-70567014 | None:intergenic |
| TTTCTCCACCCACACACCAT+TGG | 0.515807 | 8.2:-70567219 | None:intergenic |
| CATCTTTGAGGAGGACAGAA+AGG | 0.516633 | 8.2:-70567163 | None:intergenic |
| AGCGGGAGTAGCCTTATAAT+CGG | 0.517969 | 8.2:-70567282 | None:intergenic |
| TAGAAATAGGAAAGGGTGAT+CGG | 0.524118 | 8.2:-70569106 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.2:-70566980 | None:intergenic |
| GGTTGGTGCTTGATTCATCA+AGG | 0.525769 | 8.2:-70566944 | None:intergenic |
| CTCTAATTAGAAATAGGAAA+GGG | 0.528170 | 8.2:-70569113 | None:intergenic |
| AGTTTACCTTTCTCTTCTGG+AGG | 0.529550 | 8.2:+70568925 | MS.gene067282:CDS |
| GTAATCCATTTCCTAATTGG+AGG | 0.529962 | 8.2:+70568566 | MS.gene067282:CDS |
| AAGAGGATTGAGAACATGTC+CGG | 0.532489 | 8.2:-70569163 | None:intergenic |
| GATGATCGATGGATTTGAAA+CGG | 0.537183 | 8.2:-70567118 | None:intergenic |
| GACACGGTTTCTTTGAAGGA+AGG | 0.539804 | 8.2:-70567257 | None:intergenic |
| ACTATCAGCTATGGTTAAGA+AGG | 0.542661 | 8.2:+70568771 | MS.gene067282:CDS |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.2:-70566961 | None:intergenic |
| GCTATAAAGTCTATTCCAGT+TGG | 0.552837 | 8.2:-70569084 | None:intergenic |
| GTTTATGAAATCAACGGAAG+CGG | 0.553295 | 8.2:-70567300 | None:intergenic |
| CATGGCCCCTATTCCAGCAT+TGG | 0.553337 | 8.2:-70569055 | None:intergenic |
| AAAAGAGAGGTGAGGACCAT+CGG | 0.556500 | 8.2:-70567195 | None:intergenic |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.2:+70568891 | MS.gene067282:CDS |
| TACCTTGTTTATGAAATCAA+CGG | 0.561469 | 8.2:-70567306 | None:intergenic |
| TTCCGTTGATTTCATAAACA+AGG | 0.565371 | 8.2:+70567304 | MS.gene067282:CDS |
| TTCATTGAAGTAAACGAGGA+AGG | 0.566637 | 8.2:+70569015 | MS.gene067282:CDS |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.2:-70566979 | None:intergenic |
| AAAGGAGTTGAGATGATCGA+TGG | 0.575570 | 8.2:-70567129 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.2:-70568984 | None:intergenic |
| TACAGCCAATGCTGGAATAG+GGG | 0.578083 | 8.2:+70569050 | MS.gene067282:CDS |
| AGAAAGGAGATGAGAGACAA+AGG | 0.579717 | 8.2:-70567147 | None:intergenic |
| AAAGATGCAGCTTCTTCCGA+TGG | 0.583057 | 8.2:+70567179 | MS.gene067282:CDS |
| TGACTGAGCTCCCATTCAGA+AGG | 0.589258 | 8.2:-70568609 | None:intergenic |
| TCTCTAATTAGAAATAGGAA+AGG | 0.590645 | 8.2:-70569114 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.2:-70566965 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594137 | 8.2:+70568762 | MS.gene067282:CDS |
| AGTTAAGATCACCCAACAAG+AGG | 0.599430 | 8.2:-70569180 | None:intergenic |
| ATCAGCTATGGTTAAGAAGG+TGG | 0.601632 | 8.2:+70568774 | MS.gene067282:CDS |
| CCTTGTAAACAAGTGAGAGT+AGG | 0.602609 | 8.2:+70568829 | MS.gene067282:CDS |
| AGCCAGCAGCAATGATGCTG+AGG | 0.612609 | 8.2:-70567058 | None:intergenic |
| AGCCTTATAATCGGTTGACA+CGG | 0.623127 | 8.2:-70567273 | None:intergenic |
| AGGACAACTTGGAGAGACAA+TGG | 0.633307 | 8.2:-70567038 | None:intergenic |
| TATTCCAGTTGGCACACACA+TGG | 0.635717 | 8.2:-70569073 | None:intergenic |
| AAGAAGCTGCATCTTTGAGG+AGG | 0.650018 | 8.2:-70567172 | None:intergenic |
| ACACACCATTGGCAAAAGAG+AGG | 0.655694 | 8.2:-70567208 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.2:-70566985 | None:intergenic |
| GTCTTTCATTGAAGTAAACG+AGG | 0.668981 | 8.2:+70569011 | MS.gene067282:CDS |
| GATCGATGGATTTGAAACGG+AGG | 0.709969 | 8.2:-70567115 | None:intergenic |
| CCATTGGCAAAAGAGAGGTG+AGG | 0.746309 | 8.2:-70567203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTGATATTGTATTTA+AGG | + | chr8.2:70568402-70568421 | MS.gene067282:intron | 10.0% |
| !! | ACATAATATTCCTTAAATTT+GGG | - | chr8.2:70567545-70567564 | None:intergenic | 15.0% |
| !! | TACATAATATTCCTTAAATT+TGG | - | chr8.2:70567546-70567565 | None:intergenic | 15.0% |
| !! | TATTATCTCATATTATCTAT+TGG | - | chr8.2:70567835-70567854 | None:intergenic | 15.0% |
| !!! | TTGTGTTATTGATTAATTAA+TGG | + | chr8.2:70567382-70567401 | MS.gene067282:intron | 15.0% |
| !! | AATCTTCTCTAATTAGAAAT+AGG | - | chr8.2:70569122-70569141 | None:intergenic | 20.0% |
| !! | AATTTAACGGTGATTATATT+TGG | + | chr8.2:70567670-70567689 | MS.gene067282:intron | 20.0% |
| !! | ACTGAGATAAACAAATTTAA+CGG | + | chr8.2:70567657-70567676 | MS.gene067282:intron | 20.0% |
| !! | ATTAAAGAAATTCTTTCTCA+AGG | + | chr8.2:70568481-70568500 | MS.gene067282:CDS | 20.0% |
| !! | TTAAAGAAATTCTTTCTCAA+GGG | + | chr8.2:70568482-70568501 | MS.gene067282:CDS | 20.0% |
| !!! | AATGTTGATTTATGCTTAAT+TGG | + | chr8.2:70567924-70567943 | MS.gene067282:intron | 20.0% |
| ! | AAAGATTATCTATGCTTCAA+AGG | - | chr8.2:70567449-70567468 | None:intergenic | 25.0% |
| ! | CTCTAATTAGAAATAGGAAA+GGG | - | chr8.2:70569116-70569135 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.2:70568435-70568454 | MS.gene067282:CDS | 25.0% |
| ! | TAGTGTATATCCCAAATTTA+AGG | + | chr8.2:70567532-70567551 | MS.gene067282:intron | 25.0% |
| ! | TCTCTAATTAGAAATAGGAA+AGG | - | chr8.2:70569117-70569136 | None:intergenic | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.2:70568434-70568453 | MS.gene067282:CDS | 25.0% |
| !! | ACTACTCAATCTTATTTAGA+AGG | - | chr8.2:70567516-70567535 | None:intergenic | 25.0% |
| !! | AGTCTAATTTTCACATATTG+CGG | - | chr8.2:70568310-70568329 | None:intergenic | 25.0% |
| !! | CAAGATTCAAATTTTCATCT+GGG | + | chr8.2:70568866-70568885 | MS.gene067282:CDS | 25.0% |
| !! | CTACTCAATCTTATTTAGAA+GGG | - | chr8.2:70567515-70567534 | None:intergenic | 25.0% |
| !! | TACCTTGTTTATGAAATCAA+CGG | - | chr8.2:70567309-70567328 | None:intergenic | 25.0% |
| !! | TTAATACCCTTGTCTATTTT+AGG | + | chr8.2:70568157-70568176 | MS.gene067282:intron | 25.0% |
| !!! | CTTTTAGCCTTTAATTCTTT+TGG | - | chr8.2:70568073-70568092 | None:intergenic | 25.0% |
| AAATGCTAAATCCCATACAA+AGG | - | chr8.2:70568038-70568057 | None:intergenic | 30.0% | |
| AAGCTGTAATAAACTGATCA+AGG | - | chr8.2:70568657-70568676 | None:intergenic | 30.0% | |
| AATGCTAAATCCCATACAAA+GGG | - | chr8.2:70568037-70568056 | None:intergenic | 30.0% | |
| ACAAATTAAAAAGCAGAGCA+TGG | - | chr8.2:70567366-70567385 | None:intergenic | 30.0% | |
| ACTTCAAAATCCTACTCAAA+TGG | - | chr8.2:70568099-70568118 | None:intergenic | 30.0% | |
| AGTGAAAATTAGAATGTTCG+TGG | - | chr8.2:70567640-70567659 | None:intergenic | 30.0% | |
| ATGAGAAGTTGAATTGATGT+TGG | - | chr8.2:70567710-70567729 | None:intergenic | 30.0% | |
| CCAGATGAAAATTTGAATCT+TGG | - | chr8.2:70568868-70568887 | None:intergenic | 30.0% | |
| CTAAAGCCTAAAATAGACAA+GGG | - | chr8.2:70568166-70568185 | None:intergenic | 30.0% | |
| GAAAGACTTGTGAAATATGT+TGG | - | chr8.2:70568998-70569017 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.2:70568987-70569006 | None:intergenic | 30.0% | |
| TGAGAAGTTGAATTGATGTT+GGG | - | chr8.2:70567709-70567728 | None:intergenic | 30.0% | |
| TGATTTATGCTTAATTGGCT+AGG | + | chr8.2:70567929-70567948 | MS.gene067282:intron | 30.0% | |
| TGCTTCTCCAAAAGAATTAA+AGG | + | chr8.2:70568063-70568082 | MS.gene067282:intron | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr8.2:70568748-70568767 | MS.gene067282:CDS | 30.0% | |
| ! | ATGATTTTCACCTTCTGAAT+GGG | + | chr8.2:70568599-70568618 | MS.gene067282:CDS | 30.0% |
| ! | CAATCTTATTTAGAAGGGAA+AGG | - | chr8.2:70567510-70567529 | None:intergenic | 30.0% |
| ! | CAGTTTATTACAGCTTTTGA+TGG | + | chr8.2:70568661-70568680 | MS.gene067282:CDS | 30.0% |
| ! | CCAAGATTCAAATTTTCATC+TGG | + | chr8.2:70568865-70568884 | MS.gene067282:CDS | 30.0% |
| ! | GAAATTTGTTCCCTTTGTAT+GGG | + | chr8.2:70568024-70568043 | MS.gene067282:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.2:70568598-70568617 | MS.gene067282:CDS | 30.0% |
| ! | TTATCTTTTCCTTGCCTATA+AGG | - | chr8.2:70568706-70568725 | None:intergenic | 30.0% |
| !! | GCTAATGCACTGTATTTTAA+AGG | + | chr8.2:70568535-70568554 | MS.gene067282:CDS | 30.0% |
| !! | TATTGCGGTTCTAAATTAGT+TGG | - | chr8.2:70568295-70568314 | None:intergenic | 30.0% |
| !! | TTCCGTTGATTTCATAAACA+AGG | + | chr8.2:70567304-70567323 | MS.gene067282:CDS | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.2:70566994-70567013 | None:intergenic | 30.0% |
| AAGTTCTTCGTCTTCCTTAT+AGG | + | chr8.2:70568689-70568708 | MS.gene067282:CDS | 35.0% | |
| AAGTTGAATTGATGTTGGGA+AGG | - | chr8.2:70567705-70567724 | None:intergenic | 35.0% | |
| ACAGCTCTGTTTATCTAGAA+GGG | + | chr8.2:70568120-70568139 | MS.gene067282:intron | 35.0% | |
| ACTATCAGCTATGGTTAAGA+AGG | + | chr8.2:70568771-70568790 | MS.gene067282:CDS | 35.0% | |
| ACTTGTTTACAAGGAAGCTT+GGG | - | chr8.2:70568823-70568842 | None:intergenic | 35.0% | |
| AGTGTAAGTATTATCACCGT+CGG | - | chr8.2:70567994-70568013 | None:intergenic | 35.0% | |
| ATGTTCTCAATCCTCTTGTT+GGG | + | chr8.2:70569169-70569188 | MS.gene067282:CDS | 35.0% | |
| CATATCTTTCACAACTCTCA+AGG | + | chr8.2:70567773-70567792 | MS.gene067282:intron | 35.0% | |
| CTAAAAGTAGCCATTTGAGT+AGG | + | chr8.2:70568086-70568105 | MS.gene067282:intron | 35.0% | |
| GCTAAAGCCTAAAATAGACA+AGG | - | chr8.2:70568167-70568186 | None:intergenic | 35.0% | |
| GCTATAAAGTCTATTCCAGT+TGG | - | chr8.2:70569087-70569106 | None:intergenic | 35.0% | |
| GGAGTAATCCATTTCCTAAT+TGG | + | chr8.2:70568563-70568582 | MS.gene067282:CDS | 35.0% | |
| GTAATCCATTTCCTAATTGG+AGG | + | chr8.2:70568566-70568585 | MS.gene067282:CDS | 35.0% | |
| GTACACCACACAAATATTCA+GGG | + | chr8.2:70567563-70567582 | MS.gene067282:intron | 35.0% | |
| GTCTTTCATTGAAGTAAACG+AGG | + | chr8.2:70569011-70569030 | MS.gene067282:CDS | 35.0% | |
| GTTTATGAAATCAACGGAAG+CGG | - | chr8.2:70567303-70567322 | None:intergenic | 35.0% | |
| TACAGCTCTGTTTATCTAGA+AGG | + | chr8.2:70568119-70568138 | MS.gene067282:intron | 35.0% | |
| TAGAAATAGGAAAGGGTGAT+CGG | - | chr8.2:70569109-70569128 | None:intergenic | 35.0% | |
| TATTTGCTTGTCCTCCAATT+AGG | - | chr8.2:70568580-70568599 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.2:70568891-70568910 | MS.gene067282:CDS | 35.0% | |
| TGTACACCACACAAATATTC+AGG | + | chr8.2:70567562-70567581 | MS.gene067282:intron | 35.0% | |
| TTATGCTTAATTGGCTAGGT+TGG | + | chr8.2:70567933-70567952 | MS.gene067282:intron | 35.0% | |
| TTCATTGAAGTAAACGAGGA+AGG | + | chr8.2:70569015-70569034 | MS.gene067282:CDS | 35.0% | |
| TTTATGAAATCAACGGAAGC+GGG | - | chr8.2:70567302-70567321 | None:intergenic | 35.0% | |
| ! | CATGGATTGCAATGAAAAGA+GGG | - | chr8.2:70567348-70567367 | None:intergenic | 35.0% |
| ! | CGAAATTTGTTCCCTTTGTA+TGG | + | chr8.2:70568023-70568042 | MS.gene067282:intron | 35.0% |
| ! | GATAGTCCATCTTTTGCATT+TGG | - | chr8.2:70568757-70568776 | None:intergenic | 35.0% |
| ! | GATGATCGATGGATTTGAAA+CGG | - | chr8.2:70567121-70567140 | None:intergenic | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | + | chr8.2:70568939-70568958 | MS.gene067282:CDS | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.2:70568762-70568781 | MS.gene067282:CDS | 35.0% |
| !! | CACTGTATTTTAAAGGAGCA+TGG | + | chr8.2:70568542-70568561 | MS.gene067282:CDS | 35.0% |
| AAAGGAGTTGAGATGATCGA+TGG | - | chr8.2:70567132-70567151 | None:intergenic | 40.0% | |
| AACCGTGTCAACCGATTATA+AGG | + | chr8.2:70567271-70567290 | MS.gene067282:CDS | 40.0% | |
| AAGAGGATTGAGAACATGTC+CGG | - | chr8.2:70569166-70569185 | None:intergenic | 40.0% | |
| AGAAAGGAGATGAGAGACAA+AGG | - | chr8.2:70567150-70567169 | None:intergenic | 40.0% | |
| AGTTTACCTTTCTCTTCTGG+AGG | + | chr8.2:70568925-70568944 | MS.gene067282:CDS | 40.0% | |
| ATCAGCCCTGAATATTTGTG+TGG | - | chr8.2:70567571-70567590 | None:intergenic | 40.0% | |
| ATCAGCTATGGTTAAGAAGG+TGG | + | chr8.2:70568774-70568793 | MS.gene067282:CDS | 40.0% | |
| ATGGTCAAACTGAGTCTTAC+TGG | + | chr8.2:70567956-70567975 | MS.gene067282:intron | 40.0% | |
| CACTTGTTTACAAGGAAGCT+TGG | - | chr8.2:70568824-70568843 | None:intergenic | 40.0% | |
| CATGTTCTCAATCCTCTTGT+TGG | + | chr8.2:70569168-70569187 | MS.gene067282:CDS | 40.0% | |
| CCTACTCTCACTTGTTTACA+AGG | - | chr8.2:70568832-70568851 | None:intergenic | 40.0% | |
| CCTTGTAAACAAGTGAGAGT+AGG | + | chr8.2:70568829-70568848 | MS.gene067282:CDS | 40.0% | |
| CTTGTCCTCCAATTAGGAAA+TGG | - | chr8.2:70568574-70568593 | None:intergenic | 40.0% | |
| GAAAAGACGATGTTGTTGTC+TGG | - | chr8.2:70567017-70567036 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr8.2:70567246-70567265 | None:intergenic | 40.0% | |
| GAATTGATGTTGGGAAGGTA+GGG | - | chr8.2:70567700-70567719 | None:intergenic | 40.0% | |
| GTGAGTTTACCTTTCTCTTC+TGG | + | chr8.2:70568922-70568941 | MS.gene067282:CDS | 40.0% | |
| GTTGGACGCAATAAAACAAG+AGG | - | chr8.2:70568277-70568296 | None:intergenic | 40.0% | |
| TCAAGGTTGCTGCTCATAAA+AGG | - | chr8.2:70568640-70568659 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.2:70568898-70568917 | MS.gene067282:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr8.2:70567247-70567266 | None:intergenic | 40.0% | |
| TGAATTGATGTTGGGAAGGT+AGG | - | chr8.2:70567701-70567720 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.2:70568942-70568961 | MS.gene067282:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.2:70568454-70568473 | MS.gene067282:CDS | 40.0% | |
| ! | AGCCTTATAATCGGTTGACA+CGG | - | chr8.2:70567276-70567295 | None:intergenic | 40.0% |
| ! | GCATGGATTGCAATGAAAAG+AGG | - | chr8.2:70567349-70567368 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.2:70568955-70568974 | MS.gene067282:CDS | 40.0% |
| !! | AACTGAGTCTTACTGGTTCA+AGG | + | chr8.2:70567963-70567982 | MS.gene067282:intron | 40.0% |
| !!! | ATGTTTTTTCGAGGCGATTC+AGG | + | chr8.2:70567589-70567608 | MS.gene067282:intron | 40.0% |
| !!! | TGTTTTTTCGAGGCGATTCA+GGG | + | chr8.2:70567590-70567609 | MS.gene067282:intron | 40.0% |
| AAAAGAGAGGTGAGGACCAT+CGG | - | chr8.2:70567198-70567217 | None:intergenic | 45.0% | |
| AAAGATGCAGCTTCTTCCGA+TGG | + | chr8.2:70567179-70567198 | MS.gene067282:CDS | 45.0% | |
| ACACACCATTGGCAAAAGAG+AGG | - | chr8.2:70567211-70567230 | None:intergenic | 45.0% | |
| ACCCAAACGATCATCTTTGC+CGG | + | chr8.2:70569144-70569163 | MS.gene067282:CDS | 45.0% | |
| AGGACAACTTGGAGAGACAA+TGG | - | chr8.2:70567041-70567060 | None:intergenic | 45.0% | |
| CAATGATGCTGAGGACAACT+TGG | - | chr8.2:70567052-70567071 | None:intergenic | 45.0% | |
| CACAACTCTCAAGGTGTAGA+TGG | + | chr8.2:70567782-70567801 | MS.gene067282:intron | 45.0% | |
| CTACAGCCAATGCTGGAATA+GGG | + | chr8.2:70569049-70569068 | MS.gene067282:CDS | 45.0% | |
| CTTCGTCTTCCTTATAGGCA+AGG | + | chr8.2:70568694-70568713 | MS.gene067282:CDS | 45.0% | |
| GGTTGACACGGTTTCTTTGA+AGG | - | chr8.2:70567264-70567283 | None:intergenic | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | - | chr8.2:70568934-70568953 | None:intergenic | 45.0% | |
| TACAGCCAATGCTGGAATAG+GGG | + | chr8.2:70569050-70569069 | MS.gene067282:CDS | 45.0% | |
| TATTCCAGTTGGCACACACA+TGG | - | chr8.2:70569076-70569095 | None:intergenic | 45.0% | |
| TCCGGCAAAGATGATCGTTT+GGG | - | chr8.2:70569148-70569167 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.2:70566988-70567007 | None:intergenic | 45.0% | |
| ! | AAGAAGCTGCATCTTTGAGG+AGG | - | chr8.2:70567175-70567194 | None:intergenic | 45.0% |
| ! | CATCTTTGAGGAGGACAGAA+AGG | - | chr8.2:70567166-70567185 | None:intergenic | 45.0% |
| ! | CTCTTTTGCCAATGGTGTGT+GGG | + | chr8.2:70567211-70567230 | MS.gene067282:CDS | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.2:70567260-70567279 | None:intergenic | 45.0% |
| ! | GATCGATGGATTTGAAACGG+AGG | - | chr8.2:70567118-70567137 | None:intergenic | 45.0% |
| ! | GCTTAATTGGCTAGGTTGGA+TGG | + | chr8.2:70567937-70567956 | MS.gene067282:intron | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.2:70566947-70566966 | None:intergenic | 45.0% |
| ! | TCTCTTTTGCCAATGGTGTG+TGG | + | chr8.2:70567210-70567229 | MS.gene067282:CDS | 45.0% |
| !! | AGCGGGAGTAGCCTTATAAT+CGG | - | chr8.2:70567285-70567304 | None:intergenic | 45.0% |
| !!! | GTTTTTTCGAGGCGATTCAG+GGG | + | chr8.2:70567591-70567610 | MS.gene067282:intron | 45.0% |
| !!! | TCAGGGCTGATGTTTTTTCG+AGG | + | chr8.2:70567580-70567599 | MS.gene067282:intron | 45.0% |
| !! | TATTATTTATATTATTTGAA+TGG | - | chr8.2:70568236-70568255 | None:intergenic | 5.0% |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.2:70566983-70567002 | None:intergenic | 50.0% | |
| CCATTGGCAAAAGAGAGGTG+AGG | - | chr8.2:70567206-70567225 | None:intergenic | 50.0% | |
| CGGAAGAAGCTGCATCTTTG+AGG | - | chr8.2:70567178-70567197 | None:intergenic | 50.0% | |
| CTGGTTCAAGGTTGAACCGA+CGG | + | chr8.2:70567975-70567994 | MS.gene067282:intron | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.2:70566982-70567001 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.2:70566964-70566983 | None:intergenic | 50.0% | |
| GCTACAGCCAATGCTGGAAT+AGG | + | chr8.2:70569048-70569067 | MS.gene067282:CDS | 50.0% | |
| GTCCGGCAAAGATGATCGTT+TGG | - | chr8.2:70569149-70569168 | None:intergenic | 50.0% | |
| TACAAGGAAGCTTGGGCTCT+AGG | - | chr8.2:70568816-70568835 | None:intergenic | 50.0% | |
| TGACTGAGCTCCCATTCAGA+AGG | - | chr8.2:70568612-70568631 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.2:70566968-70566987 | None:intergenic | 50.0% | |
| TTTCTCCACCCACACACCAT+TGG | - | chr8.2:70567222-70567241 | None:intergenic | 50.0% | |
| ! | CCTCACCTCTCTTTTGCCAA+TGG | + | chr8.2:70567203-70567222 | MS.gene067282:CDS | 50.0% |
| ! | TTTTGCCAATGGTGTGTGGG+TGG | + | chr8.2:70567214-70567233 | MS.gene067282:CDS | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+CGG | + | chr8.2:70567065-70567084 | MS.gene067282:CDS | 50.0% |
| AGCCAGCAGCAATGATGCTG+AGG | - | chr8.2:70567061-70567080 | None:intergenic | 55.0% | |
| CATGGCCCCTATTCCAGCAT+TGG | - | chr8.2:70569058-70569077 | None:intergenic | 55.0% | |
| GAAGCTGCTACAGCCAATGC+TGG | + | chr8.2:70569042-70569061 | MS.gene067282:CDS | 55.0% | |
| GTCCTCAGCATCATTGCTGC+TGG | + | chr8.2:70567056-70567075 | MS.gene067282:CDS | 55.0% | |
| GGGGCCATGTGTGTGCCAAC+TGG | + | chr8.2:70569069-70569088 | MS.gene067282:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 70566936 | 70569194 | 70566936 | ID=MS.gene067282 |
| chr8.2 | mRNA | 70566936 | 70569194 | 70566936 | ID=MS.gene067282.t1;Parent=MS.gene067282 |
| chr8.2 | exon | 70566936 | 70567325 | 70566936 | ID=MS.gene067282.t1.exon1;Parent=MS.gene067282.t1 |
| chr8.2 | CDS | 70566936 | 70567325 | 70566936 | ID=cds.MS.gene067282.t1;Parent=MS.gene067282.t1 |
| chr8.2 | exon | 70568424 | 70569194 | 70568424 | ID=MS.gene067282.t1.exon2;Parent=MS.gene067282.t1 |
| chr8.2 | CDS | 70568424 | 70569194 | 70568424 | ID=cds.MS.gene067282.t1;Parent=MS.gene067282.t1 |
| Gene Sequence |
| Protein sequence |
