Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067811.t1 | XP_013449504.1 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 1.10E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067811.t1 | Q9LU39 | 25.4 | 244 | 154 | 8 | 41 | 276 | 61 | 284 | 1.7e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067811.t1 | A0A072U1J2 | 97.5 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 7.6e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050747 | MS.gene067811 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene067811 | 0.810095 | 1.37E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene067811 | 0.802564 | 5.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067811.t1 | MTR_7g085670 | 97.491 | 279 | 7 | 0 | 3 | 281 | 50 | 328 | 0.0 | 563 |
| MS.gene067811.t1 | MTR_7g085670 | 97.740 | 177 | 4 | 0 | 3 | 179 | 50 | 226 | 8.87e-126 | 358 |
| MS.gene067811.t1 | MTR_4g007990 | 28.571 | 245 | 149 | 12 | 36 | 268 | 135 | 365 | 1.92e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067811.t1 | AT3G03890 | 76.357 | 258 | 61 | 0 | 20 | 277 | 62 | 319 | 3.59e-148 | 418 |
| MS.gene067811.t1 | AT3G03890 | 75.000 | 244 | 61 | 0 | 20 | 263 | 62 | 305 | 6.54e-138 | 391 |
| MS.gene067811.t1 | AT1G51560 | 27.626 | 257 | 136 | 12 | 36 | 268 | 141 | 371 | 1.10e-17 | 82.4 |
| MS.gene067811.t1 | AT3G21140 | 29.084 | 251 | 140 | 11 | 36 | 268 | 137 | 367 | 1.50e-17 | 82.0 |
Find 66 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACAAATCGTACAACTTT+TGG | 0.244472 | 7.1:+19434273 | None:intergenic |
| TCCTAAATGTTCAGTGCTTT+TGG | 0.253580 | 7.1:-19434719 | MS.gene067811:CDS |
| GGCCATACGAGCTGCATATT+TGG | 0.255255 | 7.1:-19434448 | MS.gene067811:CDS |
| CTTTGCTGACATAATAGATT+TGG | 0.270171 | 7.1:-19433233 | MS.gene067811:CDS |
| CGAGACATCCCAATGCGTTT+TGG | 0.271589 | 7.1:-19434425 | MS.gene067811:CDS |
| GCCAAAAGCACTGAACATTT+AGG | 0.293730 | 7.1:+19434718 | None:intergenic |
| GGTGTTGCCACAGCTTTGTT+AGG | 0.347039 | 7.1:-19434249 | MS.gene067811:CDS |
| CGGTTATCCATCAGGATCTA+TGG | 0.347934 | 7.1:-19435144 | MS.gene067811:CDS |
| TCAATTAATTCAAGCTCATC+AGG | 0.370693 | 7.1:-19436202 | MS.gene067811:intron |
| GGCTTGGAAAACTGAGCAAT+GGG | 0.383757 | 7.1:+19433527 | None:intergenic |
| ATGAATCAGGTTGTGTCCTC+TGG | 0.391239 | 7.1:-19436255 | MS.gene067811:intron |
| GCCACAGCTTTGTTAGGATC+AGG | 0.395641 | 7.1:-19434243 | MS.gene067811:CDS |
| TCCTGAAGATAGGACTGATT+TGG | 0.404816 | 7.1:-19434689 | MS.gene067811:CDS |
| CAACTTGAGGCTTGGCAGCT+TGG | 0.406436 | 7.1:+19432733 | None:intergenic |
| ACAGTTCGAATTTCTTCAAC+TGG | 0.411436 | 7.1:+19435761 | None:intergenic |
| TCTTCGACTTCAGAGTTTAC+CGG | 0.413103 | 7.1:-19433578 | MS.gene067811:intron |
| TCGTCTAGGTTTCAATGTTA+AGG | 0.415391 | 7.1:-19433209 | MS.gene067811:intron |
| AAGTCGCTCACTGCTAATAT+AGG | 0.415949 | 7.1:+19435092 | None:intergenic |
| TAAGAGATTAATACAGCTAC+TGG | 0.429496 | 7.1:+19433506 | None:intergenic |
| TGCTGATTTGTACTCATCTC+CGG | 0.430709 | 7.1:+19433559 | None:intergenic |
| TCTTACTTTCTATCTTCTGC+AGG | 0.436757 | 7.1:+19432888 | None:intergenic |
| TGGCTAGAGATCCTGAAGAT+AGG | 0.437357 | 7.1:-19434699 | MS.gene067811:CDS |
| GCAGCACTGGACCTCAGTTC+CGG | 0.448145 | 7.1:-19433353 | MS.gene067811:intron |
| AGGTACCTGAGTAGTGGATT+GGG | 0.448889 | 7.1:+19436461 | None:intergenic |
| TTATATTCAGGTACCTGAAA+AGG | 0.458927 | 7.1:-19434478 | MS.gene067811:intron |
| CTGTACTTTGCAGGACTTAG+CGG | 0.469481 | 7.1:-19434746 | MS.gene067811:intron |
| AAGTATGACGGTTATCCATC+AGG | 0.473161 | 7.1:-19435152 | MS.gene067811:CDS |
| CTCGTAATGAAGGTTGACTT+TGG | 0.474484 | 7.1:-19434321 | MS.gene067811:intron |
| AAAGTTACCCAAAACGCATT+GGG | 0.484421 | 7.1:+19434417 | None:intergenic |
| TTTCTATCTTCTGCAGGTCG+AGG | 0.484803 | 7.1:+19432894 | None:intergenic |
| GAGGTACCTGAGTAGTGGAT+TGG | 0.486138 | 7.1:+19436460 | None:intergenic |
| CGCCAAATATGCAGCTCGTA+TGG | 0.487531 | 7.1:+19434446 | None:intergenic |
| CTAAAGCGATTGTGCAGCAC+TGG | 0.493445 | 7.1:-19433366 | MS.gene067811:CDS |
| TTGGTTCAATGCGTACAAAT+CGG | 0.494738 | 7.1:+19434292 | None:intergenic |
| CGACTTGGCAGTTCATTCAA+AGG | 0.496656 | 7.1:-19435075 | MS.gene067811:intron |
| TTCTATCTTCTGCAGGTCGA+GGG | 0.497692 | 7.1:+19432895 | None:intergenic |
| GATTAATACAGCTACTGGCT+TGG | 0.501003 | 7.1:+19433511 | None:intergenic |
| GACTTTGCATGTGATGCAAA+TGG | 0.502893 | 7.1:-19435119 | MS.gene067811:CDS |
| ACCAAATCAGTCCTATCTTC+AGG | 0.507307 | 7.1:+19434688 | None:intergenic |
| AAAAGTTACCCAAAACGCAT+TGG | 0.512742 | 7.1:+19434416 | None:intergenic |
| AAAGTTGTACGATTTGTGTC+AGG | 0.512754 | 7.1:-19434270 | MS.gene067811:CDS |
| AACAGAAACCTTCGAGAATG+TGG | 0.529578 | 7.1:+19435709 | None:intergenic |
| GTATCAATCAACTTGAGGCT+TGG | 0.543974 | 7.1:+19432725 | None:intergenic |
| TCTTCTGCAGGTCGAGGGAA+AGG | 0.546658 | 7.1:+19432900 | None:intergenic |
| TAGATGTATCAATCAACTTG+AGG | 0.555292 | 7.1:+19432720 | None:intergenic |
| ATAATAGATTTGGATCGTCT+AGG | 0.558053 | 7.1:-19433223 | MS.gene067811:CDS |
| GGTACCTGAAAAGGATAAAG+AGG | 0.559008 | 7.1:-19434469 | MS.gene067811:CDS |
| TGGCTTGGAAAACTGAGCAA+TGG | 0.563411 | 7.1:+19433526 | None:intergenic |
| TTCTTCCCAATCCACTACTC+AGG | 0.566362 | 7.1:-19436466 | MS.gene067811:intron |
| GTTCGAATTTCTTCAACTGG+TGG | 0.572856 | 7.1:+19435764 | None:intergenic |
| GACGCTCTCCACATTCTCGA+AGG | 0.577675 | 7.1:-19435717 | MS.gene067811:intron |
| TCCCACGTAGACTACGATCA+AGG | 0.587187 | 7.1:+19435738 | None:intergenic |
| AAATAGAGGTACCTGAGTAG+TGG | 0.589705 | 7.1:+19436455 | None:intergenic |
| CAGGTCGAGGGAAAGGCACA+CGG | 0.592459 | 7.1:+19432907 | None:intergenic |
| TATATTAGCAGTGAGCGACT+TGG | 0.593728 | 7.1:-19435090 | MS.gene067811:CDS |
| AAGTCAACCATAGATCCTGA+TGG | 0.598237 | 7.1:+19435137 | None:intergenic |
| ACAGCTTTGTTAGGATCAGG+AGG | 0.602593 | 7.1:-19434240 | MS.gene067811:intron |
| GTCCTTGATCGTAGTCTACG+TGG | 0.607414 | 7.1:-19435740 | MS.gene067811:CDS |
| TTTGACACGCAGAAGTATGA+CGG | 0.611261 | 7.1:-19435164 | MS.gene067811:intron |
| TCCTTGATCGTAGTCTACGT+GGG | 0.641535 | 7.1:-19435739 | MS.gene067811:CDS |
| AAGGGGACATACCGGAACTG+AGG | 0.652484 | 7.1:+19433342 | None:intergenic |
| TCCTGATCCTAACAAAGCTG+TGG | 0.652822 | 7.1:+19434242 | None:intergenic |
| TCGCACATGAACAAAGATCA+CGG | 0.675086 | 7.1:-19433397 | MS.gene067811:CDS |
| GATTTGGTGATCACTATCCA+CGG | 0.676849 | 7.1:-19434673 | MS.gene067811:CDS |
| GCTTGGAAAACTGAGCAATG+GGG | 0.731088 | 7.1:+19433528 | None:intergenic |
| TTACAAAGATAGCGTCACCG+TGG | 0.762471 | 7.1:+19434656 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAACTGTAAATTATTA+TGG | - | chr7.1:19433640-19433659 | MS.gene067811:intron | 10.0% |
| !! | ATTTGATAAATAATAGTAAA+AGG | + | chr7.1:19434635-19434654 | None:intergenic | 10.0% |
| !! | CTATTGAATAATAATTAATT+GGG | - | chr7.1:19432811-19432830 | MS.gene067811:intron | 10.0% |
| !! | TATATTAAAAGAGAAAATTT+GGG | + | chr7.1:19435770-19435789 | None:intergenic | 10.0% |
| !! | TTATATTAAAAGAGAAAATT+TGG | + | chr7.1:19435771-19435790 | None:intergenic | 10.0% |
| !! | AAAAAAAAACAGAATATTGT+AGG | + | chr7.1:19436373-19436392 | None:intergenic | 15.0% |
| !! | AAATATTATCATGTAAACAT+AGG | - | chr7.1:19435111-19435130 | MS.gene067811:CDS | 15.0% |
| !! | AATATTATCATGTAAACATA+GGG | - | chr7.1:19435112-19435131 | MS.gene067811:CDS | 15.0% |
| !! | ACTATTATTTATCAAATGAT+TGG | - | chr7.1:19434638-19434657 | MS.gene067811:intron | 15.0% |
| !! | CCAATTAATTATTATTCAAT+AGG | + | chr7.1:19432813-19432832 | None:intergenic | 15.0% |
| !! | CCTATTGAATAATAATTAAT+TGG | - | chr7.1:19432810-19432829 | MS.gene067811:intron | 15.0% |
| !! | TGCATAAAAAAGAATATATA+AGG | - | chr7.1:19435428-19435447 | MS.gene067811:intron | 15.0% |
| !!! | TATTTATTGCTTTTCTTTTA+GGG | - | chr7.1:19436421-19436440 | MS.gene067811:intron | 15.0% |
| !!! | TGAAATTTTGTTTTAGTAAT+TGG | - | chr7.1:19433978-19433997 | MS.gene067811:intron | 15.0% |
| !!! | TTTTAGTTAAGTTTTGATTT+TGG | + | chr7.1:19435263-19435282 | None:intergenic | 15.0% |
| !!! | TTTTTAACAATAAACTTTGA+GGG | + | chr7.1:19434185-19434204 | None:intergenic | 15.0% |
| !!! | TTTTTTAACAATAAACTTTG+AGG | + | chr7.1:19434186-19434205 | None:intergenic | 15.0% |
| !! | AAGAAATAATGTATAACTAC+TGG | + | chr7.1:19434597-19434616 | None:intergenic | 20.0% |
| !! | AATAGGTTCAAAGAAAAAAA+GGG | + | chr7.1:19432796-19432815 | None:intergenic | 20.0% |
| !! | AATTGAATGTGTATAATTTC+AGG | - | chr7.1:19433365-19433384 | MS.gene067811:CDS | 20.0% |
| !! | AATTTGTGAACTTGTATAAA+TGG | - | chr7.1:19434262-19434281 | MS.gene067811:CDS | 20.0% |
| !! | ATAATAGAATCATTATACGA+AGG | - | chr7.1:19434677-19434696 | MS.gene067811:CDS | 20.0% |
| !! | ATACACATGAAATTAACTTA+TGG | + | chr7.1:19435560-19435579 | None:intergenic | 20.0% |
| !! | TAATAGAATCATTATACGAA+GGG | - | chr7.1:19434678-19434697 | MS.gene067811:CDS | 20.0% |
| !! | TAATTAATTAATGTGATTCG+TGG | - | chr7.1:19432924-19432943 | MS.gene067811:CDS | 20.0% |
| !! | TTTAAAAATCACCTACAAAT+TGG | - | chr7.1:19436108-19436127 | MS.gene067811:intron | 20.0% |
| !!! | AAGATTGATTTATGTTAATG+GGG | - | chr7.1:19433388-19433407 | MS.gene067811:CDS | 20.0% |
| !!! | AATAATCATTTTTTTTAGGC+TGG | - | chr7.1:19436251-19436270 | MS.gene067811:intron | 20.0% |
| !!! | ATTTTATTCCACTCATAAAA+AGG | + | chr7.1:19435090-19435109 | None:intergenic | 20.0% |
| !!! | CTATTTATTGCTTTTCTTTT+AGG | - | chr7.1:19436420-19436439 | MS.gene067811:intron | 20.0% |
| !!! | GAAGATTGATTTATGTTAAT+GGG | - | chr7.1:19433387-19433406 | MS.gene067811:CDS | 20.0% |
| !!! | TTTTATTCCACTCATAAAAA+GGG | + | chr7.1:19435089-19435108 | None:intergenic | 20.0% |
| ! | AAATAAAAGACAAGATGAGA+AGG | + | chr7.1:19434022-19434041 | None:intergenic | 25.0% |
| ! | AAATATCTTTCCATTACTTC+AGG | - | chr7.1:19435510-19435529 | MS.gene067811:intron | 25.0% |
| ! | AATAGAATCATTATACGAAG+GGG | - | chr7.1:19434679-19434698 | MS.gene067811:CDS | 25.0% |
| ! | ACTTCTACAAAAATCAATGA+AGG | + | chr7.1:19433162-19433181 | None:intergenic | 25.0% |
| ! | ATAGTCCTGAAATTATATTC+AGG | - | chr7.1:19434715-19434734 | MS.gene067811:CDS | 25.0% |
| ! | ATGTAAACTTCACATAAGAT+GGG | + | chr7.1:19433571-19433590 | None:intergenic | 25.0% |
| ! | ATTAAAAGAGAAAATTTGGG+TGG | + | chr7.1:19435767-19435786 | None:intergenic | 25.0% |
| ! | ATTAACTTATGGTTCATAGA+TGG | + | chr7.1:19435549-19435568 | None:intergenic | 25.0% |
| ! | ATTATAACTGTTAAGATGAC+CGG | + | chr7.1:19434373-19434392 | None:intergenic | 25.0% |
| ! | CAATAGGTTCAAAGAAAAAA+AGG | + | chr7.1:19432797-19432816 | None:intergenic | 25.0% |
| ! | CAGAGAAGATTTCAATTTAA+TGG | + | chr7.1:19433933-19433952 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAATTTGT+AGG | + | chr7.1:19436122-19436141 | None:intergenic | 25.0% |
| ! | GTATATAGTATGATCAAGAA+AGG | - | chr7.1:19435898-19435917 | MS.gene067811:intron | 25.0% |
| ! | TAAGTAAAAATACTGCCTAA+AGG | + | chr7.1:19436078-19436097 | None:intergenic | 25.0% |
| ! | TCATACTATATACTGTACAA+CGG | + | chr7.1:19435891-19435910 | None:intergenic | 25.0% |
| !! | AAGATTAGATTTGACTTCAT+CGG | - | chr7.1:19434226-19434245 | MS.gene067811:intron | 25.0% |
| !! | GGAAGATTGATTTATGTTAA+TGG | - | chr7.1:19433386-19433405 | MS.gene067811:CDS | 25.0% |
| !! | TTTAGTTGTTGTTGTTCATA+GGG | + | chr7.1:19433861-19433880 | None:intergenic | 25.0% |
| !! | TTTTCAGAAAAGTTCATGTT+AGG | + | chr7.1:19435219-19435238 | None:intergenic | 25.0% |
| !!! | GCAATCTTTTAATTTGTTTG+TGG | + | chr7.1:19434416-19434435 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAACATCACCAG+AGG | + | chr7.1:19432969-19432988 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGTTGTTGTTCAT+AGG | + | chr7.1:19433862-19433881 | None:intergenic | 25.0% |
| AAAAATACTGCCTAAAGGTA+TGG | + | chr7.1:19436073-19436092 | None:intergenic | 30.0% | |
| AAATGAACTACTCGTAATGA+AGG | - | chr7.1:19434874-19434893 | MS.gene067811:intron | 30.0% | |
| AAGGGAAATGTTTCATACTA+TGG | + | chr7.1:19435071-19435090 | None:intergenic | 30.0% | |
| AGAAAAGTTCATGTTAGGAA+AGG | + | chr7.1:19435214-19435233 | None:intergenic | 30.0% | |
| AGCTATACAAATCAGTGTAA+GGG | + | chr7.1:19433529-19433548 | None:intergenic | 30.0% | |
| AGGTACCTGAATATAATTTC+AGG | + | chr7.1:19434723-19434742 | None:intergenic | 30.0% | |
| AGTTTATTTGCCATACCTTT+AGG | - | chr7.1:19436060-19436079 | MS.gene067811:intron | 30.0% | |
| ATAATAGATTTGGATCGTCT+AGG | - | chr7.1:19435982-19436001 | MS.gene067811:intron | 30.0% | |
| ATCAAGAAATCAACAGCTTT+AGG | + | chr7.1:19435305-19435324 | None:intergenic | 30.0% | |
| CAGAGAAGTGAATTACAAAA+TGG | + | chr7.1:19433038-19433057 | None:intergenic | 30.0% | |
| CATACTATATACTGTACAAC+GGG | + | chr7.1:19435890-19435909 | None:intergenic | 30.0% | |
| CATGTAAACTTCACATAAGA+TGG | + | chr7.1:19433572-19433591 | None:intergenic | 30.0% | |
| CTAAATTGACAGAAGCTAAT+GGG | + | chr7.1:19433201-19433220 | None:intergenic | 30.0% | |
| CTTTGAACATTACAAATGCT+GGG | - | chr7.1:19433735-19433754 | MS.gene067811:intron | 30.0% | |
| CTTTGCTGACATAATAGATT+TGG | - | chr7.1:19435972-19435991 | MS.gene067811:intron | 30.0% | |
| TAAGAGATTAATACAGCTAC+TGG | + | chr7.1:19435702-19435721 | None:intergenic | 30.0% | |
| TCAAGAAATCAACAGCTTTA+GGG | + | chr7.1:19435304-19435323 | None:intergenic | 30.0% | |
| TCAATTAATTCAAGCTCATC+AGG | - | chr7.1:19433003-19433022 | MS.gene067811:intron | 30.0% | |
| TCTTTGAACATTACAAATGC+TGG | - | chr7.1:19433734-19433753 | MS.gene067811:intron | 30.0% | |
| TGTAAACTTCACATAAGATG+GGG | + | chr7.1:19433570-19433589 | None:intergenic | 30.0% | |
| TTATAACTGTTAAGATGACC+GGG | + | chr7.1:19434372-19434391 | None:intergenic | 30.0% | |
| TTATATTCAGGTACCTGAAA+AGG | - | chr7.1:19434727-19434746 | MS.gene067811:CDS | 30.0% | |
| TTATGTTAATGGGGTTATTG+TGG | - | chr7.1:19433397-19433416 | MS.gene067811:CDS | 30.0% | |
| ! | AACATTTCCCTTTTTATGAG+TGG | - | chr7.1:19435079-19435098 | MS.gene067811:CDS | 30.0% |
| ! | CAATTTTAAACTACCAGCAA+GGG | + | chr7.1:19433350-19433369 | None:intergenic | 30.0% |
| ! | CATTATAGTTGATACCTTGA+AGG | - | chr7.1:19435142-19435161 | MS.gene067811:CDS | 30.0% |
| ! | CATTTTGTAATTCACTTCTC+TGG | - | chr7.1:19433036-19433055 | MS.gene067811:intron | 30.0% |
| ! | TATTGTTTTCTGTACTTTGC+AGG | - | chr7.1:19434450-19434469 | MS.gene067811:CDS | 30.0% |
| ! | TCAATTTTAAACTACCAGCA+AGG | + | chr7.1:19433351-19433370 | None:intergenic | 30.0% |
| ! | TGTAAATTATTATGGTGCCA+TGG | - | chr7.1:19433648-19433667 | MS.gene067811:intron | 30.0% |
| !! | GTTAATTTGCTGTTAATGCT+GGG | - | chr7.1:19435013-19435032 | MS.gene067811:intron | 30.0% |
| !! | TGAAAACTGTACTTGTTATC+TGG | - | chr7.1:19435392-19435411 | MS.gene067811:intron | 30.0% |
| !!! | TGGGGATATTGAAGTTTTTT+TGG | - | chr7.1:19433779-19433798 | MS.gene067811:intron | 30.0% |
| !!! | TTTTTTTAGGCTGGTTATCA+GGG | - | chr7.1:19436260-19436279 | MS.gene067811:intron | 30.0% |
| !!! | TTTTTTTTAGGCTGGTTATC+AGG | - | chr7.1:19436259-19436278 | MS.gene067811:intron | 30.0% |
| AAAAGTTACCCAAAACGCAT+TGG | + | chr7.1:19434792-19434811 | None:intergenic | 35.0% | |
| AAAGTTACCCAAAACGCATT+GGG | + | chr7.1:19434791-19434810 | None:intergenic | 35.0% | |
| AAAGTTGTACGATTTGTGTC+AGG | - | chr7.1:19434935-19434954 | MS.gene067811:intron | 35.0% | |
| AATATGGCTGTTAACTTTCC+TGG | - | chr7.1:19433675-19433694 | MS.gene067811:intron | 35.0% | |
| ACAGTTCGAATTTCTTCAAC+TGG | + | chr7.1:19433447-19433466 | None:intergenic | 35.0% | |
| AGAGAAGAGTGAAGAAATAG+AGG | + | chr7.1:19432767-19432786 | None:intergenic | 35.0% | |
| ATACAAATCAGTGTAAGGGT+AGG | + | chr7.1:19433525-19433544 | None:intergenic | 35.0% | |
| ATTAACCAACAAGAGTAGTG+AGG | + | chr7.1:19434999-19435018 | None:intergenic | 35.0% | |
| CAGCTATACAAATCAGTGTA+AGG | + | chr7.1:19433530-19433549 | None:intergenic | 35.0% | |
| CATGCAGTATATGATCAGAA+AGG | + | chr7.1:19433960-19433979 | None:intergenic | 35.0% | |
| CCTAAATTGACAGAAGCTAA+TGG | + | chr7.1:19433202-19433221 | None:intergenic | 35.0% | |
| TAAAAGACAAGATGAGAAGG+AGG | + | chr7.1:19434019-19434038 | None:intergenic | 35.0% | |
| TCGTCTAGGTTTCAATGTTA+AGG | - | chr7.1:19435996-19436015 | MS.gene067811:intron | 35.0% | |
| TCTTACTTTCTATCTTCTGC+AGG | + | chr7.1:19436320-19436339 | None:intergenic | 35.0% | |
| TGATTCGTGGTTTATGAATC+AGG | - | chr7.1:19432937-19432956 | MS.gene067811:CDS | 35.0% | |
| TGGGATTGATCAAATAAGAG+AGG | - | chr7.1:19433754-19433773 | MS.gene067811:intron | 35.0% | |
| TGTTAATGCTGGGATATGTT+TGG | - | chr7.1:19435023-19435042 | MS.gene067811:intron | 35.0% | |
| TTCACATAAGATGGGGAAAA+AGG | + | chr7.1:19433563-19433582 | None:intergenic | 35.0% | |
| TTGATCAAATAAGAGAGGCA+TGG | - | chr7.1:19433759-19433778 | MS.gene067811:intron | 35.0% | |
| TTGCTCATTTCCTGAAGTAA+TGG | + | chr7.1:19435523-19435542 | None:intergenic | 35.0% | |
| TTGGTTCAATGCGTACAAAT+CGG | + | chr7.1:19434916-19434935 | None:intergenic | 35.0% | |
| ! | AAAACAAACTCTAGCCTTCA+AGG | + | chr7.1:19435159-19435178 | None:intergenic | 35.0% |
| ! | CCATTAGCTTCTGTCAATTT+AGG | - | chr7.1:19433199-19433218 | MS.gene067811:intron | 35.0% |
| ! | GACACAAATCGTACAACTTT+TGG | + | chr7.1:19434935-19434954 | None:intergenic | 35.0% |
| ! | GATTTGACTTCATCGGAAAT+AGG | - | chr7.1:19434233-19434252 | MS.gene067811:intron | 35.0% |
| ! | TCCTAAATGTTCAGTGCTTT+TGG | - | chr7.1:19434486-19434505 | MS.gene067811:intron | 35.0% |
| ! | TGATCAAATAAGAGAGGCAT+GGG | - | chr7.1:19433760-19433779 | MS.gene067811:intron | 35.0% |
| ! | TTGTTGTTGTTCATAGGGAA+GGG | + | chr7.1:19433856-19433875 | None:intergenic | 35.0% |
| !! | AAATTATTATGGTGCCATGG+TGG | - | chr7.1:19433651-19433670 | MS.gene067811:intron | 35.0% |
| !! | ACTTATCTAGAAGCACTTCT+GGG | - | chr7.1:19433063-19433082 | MS.gene067811:intron | 35.0% |
| !! | GGTTAATTTGCTGTTAATGC+TGG | - | chr7.1:19435012-19435031 | MS.gene067811:intron | 35.0% |
| !! | TATTGACTTAGGCTTGTCAA+AGG | - | chr7.1:19434300-19434319 | MS.gene067811:CDS | 35.0% |
| AACAGAAACCTTCGAGAATG+TGG | + | chr7.1:19433499-19433518 | None:intergenic | 40.0% | |
| AAGTATGACGGTTATCCATC+AGG | - | chr7.1:19434053-19434072 | MS.gene067811:intron | 40.0% | |
| AAGTCAACCATAGATCCTGA+TGG | + | chr7.1:19434071-19434090 | None:intergenic | 40.0% | |
| AAGTCGCTCACTGCTAATAT+AGG | + | chr7.1:19434116-19434135 | None:intergenic | 40.0% | |
| AATGCTGGGATATGTTTGGA+AGG | - | chr7.1:19435027-19435046 | MS.gene067811:intron | 40.0% | |
| ACCAAATCAGTCCTATCTTC+AGG | + | chr7.1:19434520-19434539 | None:intergenic | 40.0% | |
| ATATACTGTACAACGGGCAA+GGG | + | chr7.1:19435884-19435903 | None:intergenic | 40.0% | |
| ATGCTGGGATATGTTTGGAA+GGG | - | chr7.1:19435028-19435047 | MS.gene067811:intron | 40.0% | |
| CCTAAGTCAATACTGTGTGA+TGG | + | chr7.1:19434292-19434311 | None:intergenic | 40.0% | |
| GACTTTGCATGTGATGCAAA+TGG | - | chr7.1:19434086-19434105 | MS.gene067811:intron | 40.0% | |
| GGTACCTGAAAAGGATAAAG+AGG | - | chr7.1:19434736-19434755 | MS.gene067811:CDS | 40.0% | |
| GTTAACCTCACTACTCTTGT+TGG | - | chr7.1:19434991-19435010 | MS.gene067811:intron | 40.0% | |
| GTTCGAATTTCTTCAACTGG+TGG | + | chr7.1:19433444-19433463 | None:intergenic | 40.0% | |
| TAGAAGCTAAAATCCCTTGC+TGG | - | chr7.1:19433334-19433353 | MS.gene067811:intron | 40.0% | |
| TATATACTGTACAACGGGCA+AGG | + | chr7.1:19435885-19435904 | None:intergenic | 40.0% | |
| TATATTAGCAGTGAGCGACT+TGG | - | chr7.1:19434115-19434134 | MS.gene067811:intron | 40.0% | |
| TCCTGAAGATAGGACTGATT+TGG | - | chr7.1:19434516-19434535 | MS.gene067811:intron | 40.0% | |
| TCGCACATGAACAAAGATCA+CGG | - | chr7.1:19435808-19435827 | MS.gene067811:intron | 40.0% | |
| TCTTCGACTTCAGAGTTTAC+CGG | - | chr7.1:19435627-19435646 | MS.gene067811:intron | 40.0% | |
| TGACTGAATTGATCATCTGC+AGG | - | chr7.1:19435945-19435964 | MS.gene067811:intron | 40.0% | |
| ! | AGTCAATACTGTGTGATGGA+TGG | + | chr7.1:19434288-19434307 | None:intergenic | 40.0% |
| ! | ATGGCCTCTTTATCCTTTTC+AGG | + | chr7.1:19434743-19434762 | None:intergenic | 40.0% |
| ! | CTCGTAATGAAGGTTGACTT+TGG | - | chr7.1:19434884-19434903 | MS.gene067811:intron | 40.0% |
| ! | GATCAAATAAGAGAGGCATG+GGG | - | chr7.1:19433761-19433780 | MS.gene067811:intron | 40.0% |
| ! | GATTAATACAGCTACTGGCT+TGG | + | chr7.1:19435697-19435716 | None:intergenic | 40.0% |
| ! | GTTGTTGTTGTTCATAGGGA+AGG | + | chr7.1:19433857-19433876 | None:intergenic | 40.0% |
| ! | TGACTTTTGTTCATACCCCA+AGG | - | chr7.1:19433819-19433838 | MS.gene067811:intron | 40.0% |
| ! | TTTGACACGCAGAAGTATGA+CGG | - | chr7.1:19434041-19434060 | MS.gene067811:intron | 40.0% |
| !! | AAATAGAGGTACCTGAGTAG+TGG | + | chr7.1:19432753-19432772 | None:intergenic | 40.0% |
| !! | AAGGGTGTTTACAGTTCCTT+GGG | + | chr7.1:19433838-19433857 | None:intergenic | 40.0% |
| !! | AGCTGTTGATTTCTTGATGC+TGG | - | chr7.1:19435307-19435326 | MS.gene067811:intron | 40.0% |
| !! | CACTTATCTAGAAGCACTTC+TGG | - | chr7.1:19433062-19433081 | MS.gene067811:intron | 40.0% |
| !! | CCATCACACAGTATTGACTT+AGG | - | chr7.1:19434289-19434308 | MS.gene067811:CDS | 40.0% |
| !! | GATTTGGTGATCACTATCCA+CGG | - | chr7.1:19434532-19434551 | MS.gene067811:intron | 40.0% |
| !! | GCCAAAAGCACTGAACATTT+AGG | + | chr7.1:19434490-19434509 | None:intergenic | 40.0% |
| !! | TGCTGATTTGTACTCATCTC+CGG | + | chr7.1:19435649-19435668 | None:intergenic | 40.0% |
| !!! | GAAGGCTAGAGTTTGTTTTG+CGG | - | chr7.1:19435160-19435179 | MS.gene067811:intron | 40.0% |
| CGGTTATCCATCAGGATCTA+TGG | - | chr7.1:19434061-19434080 | MS.gene067811:intron | 45.0% | |
| CTGAATTGATCATCTGCAGG+TGG | - | chr7.1:19435948-19435967 | MS.gene067811:intron | 45.0% | |
| CTGTACTTTGCAGGACTTAG+CGG | - | chr7.1:19434459-19434478 | MS.gene067811:CDS | 45.0% | |
| GCTTGGAAAACTGAGCAATG+GGG | + | chr7.1:19435680-19435699 | None:intergenic | 45.0% | |
| GGCTTGGAAAACTGAGCAAT+GGG | + | chr7.1:19435681-19435700 | None:intergenic | 45.0% | |
| GTTAATGGGGTTATTGTGGC+AGG | - | chr7.1:19433401-19433420 | MS.gene067811:intron | 45.0% | |
| TAACAGCCATATTGCCACCA+TGG | + | chr7.1:19433668-19433687 | None:intergenic | 45.0% | |
| TATACTGTACAACGGGCAAG+GGG | + | chr7.1:19435883-19435902 | None:intergenic | 45.0% | |
| TCCTGATCCTAACAAAGCTG+TGG | + | chr7.1:19434966-19434985 | None:intergenic | 45.0% | |
| TCCTTGATCGTAGTCTACGT+GGG | - | chr7.1:19433466-19433485 | MS.gene067811:intron | 45.0% | |
| TGGCTAGAGATCCTGAAGAT+AGG | - | chr7.1:19434506-19434525 | MS.gene067811:intron | 45.0% | |
| TTACAAAGATAGCGTCACCG+TGG | + | chr7.1:19434552-19434571 | None:intergenic | 45.0% | |
| TTCTATCTTCTGCAGGTCGA+GGG | + | chr7.1:19436313-19436332 | None:intergenic | 45.0% | |
| TTCTTCCCAATCCACTACTC+AGG | - | chr7.1:19432739-19432758 | MS.gene067811:CDS | 45.0% | |
| TTGATTTCTTGATGCTGGCG+TGG | - | chr7.1:19435312-19435331 | MS.gene067811:intron | 45.0% | |
| TTTCTATCTTCTGCAGGTCG+AGG | + | chr7.1:19436314-19436333 | None:intergenic | 45.0% | |
| ! | AGGGTGTTTACAGTTCCTTG+GGG | + | chr7.1:19433837-19433856 | None:intergenic | 45.0% |
| ! | ATGAATCAGGTTGTGTCCTC+TGG | - | chr7.1:19432950-19432969 | MS.gene067811:intron | 45.0% |
| ! | CGACTTGGCAGTTCATTCAA+AGG | - | chr7.1:19434130-19434149 | MS.gene067811:intron | 45.0% |
| ! | GAGACATCCCAATGCGTTTT+GGG | - | chr7.1:19434781-19434800 | MS.gene067811:intron | 45.0% |
| ! | TGGCTTGGAAAACTGAGCAA+TGG | + | chr7.1:19435682-19435701 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTAGGATCAGG+AGG | - | chr7.1:19434965-19434984 | MS.gene067811:intron | 45.0% |
| !! | AGGTACCTGAGTAGTGGATT+GGG | + | chr7.1:19432747-19432766 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTTACAGTTCCT+TGG | + | chr7.1:19433839-19433858 | None:intergenic | 45.0% |
| !!! | TCAATTAAAATATTTTTTAT+TGG | - | chr7.1:19435478-19435497 | MS.gene067811:intron | 5.0% |
| !!! | TTTAAATAATCATTTTTTTT+AGG | - | chr7.1:19436247-19436266 | MS.gene067811:CDS | 5.0% |
| AGTGAAAGCTACTCCAGACC+AGG | + | chr7.1:19433696-19433715 | None:intergenic | 50.0% | |
| CCTGCTTTACAGCATCCACA+CGG | + | chr7.1:19435186-19435205 | None:intergenic | 50.0% | |
| CGCCAAATATGCAGCTCGTA+TGG | + | chr7.1:19434762-19434781 | None:intergenic | 50.0% | |
| CTAAAGCGATTGTGCAGCAC+TGG | - | chr7.1:19435839-19435858 | MS.gene067811:intron | 50.0% | |
| GGCCATACGAGCTGCATATT+TGG | - | chr7.1:19434757-19434776 | MS.gene067811:intron | 50.0% | |
| GGCTGTTAACTTTCCTGGTC+TGG | - | chr7.1:19433680-19433699 | MS.gene067811:intron | 50.0% | |
| GTCCTTGATCGTAGTCTACG+TGG | - | chr7.1:19433465-19433484 | MS.gene067811:intron | 50.0% | |
| TCATGTCTTCAACCTGCTCC+CGG | - | chr7.1:19434351-19434370 | MS.gene067811:intron | 50.0% | |
| TCCCACGTAGACTACGATCA+AGG | + | chr7.1:19433470-19433489 | None:intergenic | 50.0% | |
| ! | CGAGACATCCCAATGCGTTT+TGG | - | chr7.1:19434780-19434799 | MS.gene067811:intron | 50.0% |
| ! | GGTCTGGAGTAGCTTTCACT+AGG | - | chr7.1:19433696-19433715 | MS.gene067811:intron | 50.0% |
| !! | ATGGTGCCATGGTGGCAATA+TGG | - | chr7.1:19433659-19433678 | MS.gene067811:intron | 50.0% |
| !! | GAGGTACCTGAGTAGTGGAT+TGG | + | chr7.1:19432748-19432767 | None:intergenic | 50.0% |
| !! | GCCACAGCTTTGTTAGGATC+AGG | - | chr7.1:19434962-19434981 | MS.gene067811:intron | 50.0% |
| !! | GGTGTTGCCACAGCTTTGTT+AGG | - | chr7.1:19434956-19434975 | MS.gene067811:intron | 50.0% |
| AAGGGGACATACCGGAACTG+AGG | + | chr7.1:19435866-19435885 | None:intergenic | 55.0% | |
| CAACTTGAGGCTTGGCAGCT+TGG | + | chr7.1:19436475-19436494 | None:intergenic | 55.0% | |
| CCGTGTGGATGCTGTAAAGC+AGG | - | chr7.1:19435183-19435202 | MS.gene067811:intron | 55.0% | |
| CTGTTAAGATGACCGGGAGC+AGG | + | chr7.1:19434366-19434385 | None:intergenic | 55.0% | |
| GACGCTCTCCACATTCTCGA+AGG | - | chr7.1:19433488-19433507 | MS.gene067811:intron | 55.0% | |
| TCTTCTGCAGGTCGAGGGAA+AGG | + | chr7.1:19436308-19436327 | None:intergenic | 55.0% | |
| !!! | GAGTTTGTTTTGCGGCCGTG+TGG | - | chr7.1:19435168-19435187 | MS.gene067811:intron | 55.0% |
| CAACGGGCAAGGGGACATAC+CGG | + | chr7.1:19435874-19435893 | None:intergenic | 60.0% | |
| ! | CAGGTCGAGGGAAAGGCACA+CGG | + | chr7.1:19436301-19436320 | None:intergenic | 60.0% |
| ! | GCAGCACTGGACCTCAGTTC+CGG | - | chr7.1:19435852-19435871 | MS.gene067811:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 19432728 | 19436499 | 19432728 | ID=MS.gene067811 |
| chr7.1 | mRNA | 19432728 | 19436499 | 19432728 | ID=MS.gene067811.t1;Parent=MS.gene067811 |
| chr7.1 | exon | 19436467 | 19436499 | 19436467 | ID=MS.gene067811.t1.exon1;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19436467 | 19436499 | 19436467 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19436203 | 19436268 | 19436203 | ID=MS.gene067811.t1.exon2;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19436203 | 19436268 | 19436203 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19435718 | 19435804 | 19435718 | ID=MS.gene067811.t1.exon3;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19435718 | 19435804 | 19435718 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19435076 | 19435174 | 19435076 | ID=MS.gene067811.t1.exon4;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19435076 | 19435174 | 19435076 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19434660 | 19434755 | 19434660 | ID=MS.gene067811.t1.exon5;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19434660 | 19434755 | 19434660 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19434425 | 19434490 | 19434425 | ID=MS.gene067811.t1.exon6;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19434425 | 19434490 | 19434425 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19434241 | 19434331 | 19434241 | ID=MS.gene067811.t1.exon7;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19434241 | 19434331 | 19434241 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19433520 | 19433587 | 19433520 | ID=MS.gene067811.t1.exon8;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19433520 | 19433587 | 19433520 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19433354 | 19433419 | 19433354 | ID=MS.gene067811.t1.exon9;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19433354 | 19433419 | 19433354 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19433210 | 19433260 | 19433210 | ID=MS.gene067811.t1.exon10;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19433210 | 19433260 | 19433210 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19432894 | 19432958 | 19432894 | ID=MS.gene067811.t1.exon11;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19432894 | 19432958 | 19432894 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| chr7.1 | exon | 19432728 | 19432785 | 19432728 | ID=MS.gene067811.t1.exon12;Parent=MS.gene067811.t1 |
| chr7.1 | CDS | 19432728 | 19432785 | 19432728 | ID=cds.MS.gene067811.t1;Parent=MS.gene067811.t1 |
| Gene Sequence |
| Protein sequence |
